Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AFF2	0	genome.wustl.edu	37	X	147744200	147744200	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	147744200	147744200	C	A	SNP	AFF2	ENST00000370460	human	ensembl	69_37n	+1	known	missense	c.952	p.L318M	1.000	pfam_TF_AF4/FMR2	pfam_TF_AF4/FMR2	-	no_errors	AFF2	HGNC	ENSG00000155966	136	0	0.00	82	56	40.58	-	-	-
AKAP11	0	genome.wustl.edu	37	13	42875568	42875568	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	13	42875568	42875568	G	A	SNP	AKAP11	ENST00000025301	human	ensembl	69_37n	+1	known	missense	c.2686	p.V896I	0.104	NULL	NULL	-	no_errors	AKAP11	HGNC	ENSG00000023516	16	0	0.00	16	11	40.74	-	-	-
ANXA11	0	genome.wustl.edu	37	10	81928877	81928878	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	81928877	81928878	-	G	INS	ANXA11	ENST00000265447	human	ensembl	69_37n	-1	known	frame_shift_ins	c.409_408	p.G136fs	0.686:0.396	NULL	pfam_Annexin_repeat,superfamily_Annexin,smart_Annexin_repeat,prints_Annexin,prints_AnnexinXI,prints_AnnexinVII	-	no_errors	ANXA11	HGNC	ENSG00000122359	30	0	0.00	43	5	10.42	-	-	-
BOC	0	genome.wustl.edu	37	3	113005658	113005658	+	Silent	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	113005658	113005658	C	T	SNP	BOC	ENST00000273395	human	ensembl	69_37n	+1	known	silent	c.3297	p.S1099	0.000	NULL	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	BOC	HGNC	ENSG00000144857	122	0	0.00	56	33	37.08	-	-	-
C10orf68	0	genome.wustl.edu	37	10	33134181	33134181	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	33134181	33134181	G	-	DEL	C10orf68	ENST00000375025	human	ensembl	69_37n	+1	known	frame_shift_del	c.1284	p.E429fs	0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	13	0	0.00	4	3	42.86	-	-	-
C10orf68	0	genome.wustl.edu	37	10	33134185	33134186	+	Frame_Shift_Ins	INS	-	-	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	33134185	33134186	-	T	INS	C10orf68	ENST00000375025	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1288_1289	p.H430fs	0.000:0.000	NULL	NULL	-	no_errors	C10orf68	HGNC	ENSG00000150076	13	0	0.00	4	3	42.86	-	-	-
CLTCL1	0	genome.wustl.edu	37	22	19203720	19203720	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	22	19203720	19203720	G	A	SNP	CLTCL1	ENST00000263200	human	ensembl	69_37n	-1	known	missense	c.2966	p.S989L	0.996	pfam_Clathrin_H-chain/VPS_repeat,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	pfam_Clathrin_H-chain/VPS_repeat,pfam_Clathrin_H-chain_propeller_rpt,pfam_Clathrin_H-chain_linker_core,superfamily_Clathrin_H-chain_propeller_N,superfamily_ARM-type_fold,smart_Clathrin_H-chain/VPS_repeat,pirsf_Clathrin_heavy_chain	-	no_errors	CLTCL1	HGNC	ENSG00000070371	105	0	0.00	56	49	46.67	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130116502	130116502	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	130116502	130116502	C	T	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	+1	known	missense	c.3644	p.P1215L	0.043	NULL	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	135	0	0.00	127	85	39.91	-	-	-
CTCF	0	genome.wustl.edu	37	16	67654645	67654645	+	Missense_Mutation	SNP	C	C	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	16	67654645	67654645	C	G	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	missense	c.1132	p.P378A	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	181	0	0.00	41	103	70.55	-	-	-
CTIF	0	genome.wustl.edu	37	18	46163042	46163043	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	18	46163042	46163043	-	C	INS	CTIF	ENST00000382998	human	ensembl	69_37n	+1	known	frame_shift_ins	c.238_239	p.Q83fs	0.986:0.778	NULL	pfam_MIF4G-like_typ-3,superfamily_ARM-type_fold,smart_MIF4G-like_typ-3	-	no_errors	CTIF	HGNC	ENSG00000134030	33	0	0.00	35	4	10.26	-	-	-
DIP2C	0	genome.wustl.edu	37	10	323355	323355	+	Silent	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	323355	323355	G	A	SNP	DIP2C	ENST00000280886	human	ensembl	69_37n	-1	known	silent	c.4581	p.I1527	1.000	NULL	pfam_AMP-dep_Synth/Lig,pfam_DMAP1-bd	-	no_errors	DIP2C	HGNC	ENSG00000151240	137	0	0.00	104	42	28.57	-	-	-
DOCK10	0	genome.wustl.edu	37	2	225729785	225729785	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	225729785	225729785	C	T	SNP	DOCK10	ENST00000258390	human	ensembl	69_37n	-1	known	missense	c.1277	p.S426N	1.000	NULL	pfam_DOCK,pfam_DUF3398,pfam_Pleckstrin_homology,superfamily_ARM-type_fold,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	DOCK10	HGNC	ENSG00000135905	89	0	0.00	28	21	42.86	-	-	-
GPAT2	0	genome.wustl.edu	37	2	96688929	96688929	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	96688929	96688929	G	A	SNP	GPAT2	ENST00000359548	human	ensembl	69_37n	-1	known	missense	c.2074	p.R692C	1.000	NULL	smart_Acyltransferase	-	no_errors	GPAT2	HGNC	ENSG00000186281	64	0	0.00	76	9	10.47	-	-	-
GRHL2	0	genome.wustl.edu	37	8	102661656	102661656	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	102661656	102661656	A	T	SNP	GRHL2	ENST00000251808	human	ensembl	69_37n	+1	known	missense	c.1627	p.R543W	1.000	NULL	pfam_CP2	-	no_errors	GRHL2	HGNC	ENSG00000083307	135	0	0.00	114	88	43.56	-	-	-
HLA-DRB5	0	genome.wustl.edu	37	6	32497905	32497905	+	Silent	SNP	G	G	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	6	32497905	32497905	G	T	SNP	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	silent	c.97	p.R33	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	121	1	0.82	37	38	50.67	-	-	-
IGSF9B	0	genome.wustl.edu	37	11	133790102	133790102	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	11	133790102	133790102	G	C	SNP	IGSF9B	ENST00000321016	human	ensembl	69_37n	-1	known	missense	c.3518	p.P1173R	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGSF9B	HGNC	ENSG00000080854	8	0	0.00	10	4	28.57	-	-	-
IPPK	0	genome.wustl.edu	37	9	95381788	95381788	+	Silent	SNP	A	A	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	9	95381788	95381788	A	G	SNP	IPPK	ENST00000287996	human	ensembl	69_37n	-1	known	silent	c.1230	p.S410	0.979	pfam_Ins_P5_2-kin	pfam_Ins_P5_2-kin	-	no_errors	IPPK	HGNC	ENSG00000127080	24	0	0.00	27	20	40.82	-	-	-
KCNV1	0	genome.wustl.edu	37	8	110980575	110980575	+	Silent	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	8	110980575	110980575	C	T	SNP	KCNV1	ENST00000297404	human	ensembl	69_37n	-1	known	silent	c.1245	p.S415	0.234	pfam_Ion_trans_dom,pfam_Ion_trans_2,prints_K_chnl,prints_K_chnl_volt-dep_Kv9	pfam_T1-type_BTB,pfam_Ion_trans_dom,pfam_Ion_trans_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,prints_K_chnl,prints_K_chnl_volt-dep_Kv8,prints_K_chnl_volt-dep_Kv,prints_K_chnl_volt-dep_Kv9,prints_K_chnl_volt-dep_Kv3,prints_K_chnl_volt-dep_Kv6,prints_K_chnl_volt-dep_Kv4	-	no_errors	KCNV1	HGNC	ENSG00000164794	81	0	0.00	41	20	32.79	-	-	-
KCTD7	0	genome.wustl.edu	37	7	66103260	66103260	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	66103260	66103260	G	T	SNP	KCTD7	ENST00000275532	human	ensembl	69_37n	+1	known	missense	c.335	p.R112L	1.000	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	pfam_T1-type_BTB,superfamily_BTB/POZ_fold,smart_BTB/POZ-like	-	no_errors	KCTD7	HGNC	ENSG00000243335	87	0	0.00	75	44	36.97	-	-	-
MACF1	0	genome.wustl.edu	37	1	39853331	39853331	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	39853331	39853331	G	C	SNP	MACF1	ENST00000317713	human	ensembl	69_37n	+1	known	missense	c.8631	p.E2877D	0.959	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_GAS2_dom,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_GAS2_dom,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_EF_hand_Ca-bd,smart_GAS2_dom,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	MACF1	HGNC	ENSG00000127603	81	0	0.00	58	8	12.12	-	-	-
MADCAM1	0	genome.wustl.edu	37	19	501786	501786	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	501786	501786	C	A	SNP	MADCAM1	ENST00000215637	human	ensembl	69_37n	+1	known	missense	c.785	p.P262Q	0.000	NULL	pfam_Adhes-Ig-like,smart_Ig_sub,pfscan_Ig-like	-	no_errors	MADCAM1	HGNC	ENSG00000099866	13	0	0.00	40	17	29.82	-	-	-
MEPCE	0	genome.wustl.edu	37	7	100028415	100028415	+	Silent	SNP	T	T	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	100028415	100028415	T	A	SNP	MEPCE	ENST00000310512	human	ensembl	69_37n	+1	known	silent	c.774	p.T258	1.000	NULL	pfam_Bin3	-	no_errors	MEPCE	HGNC	ENSG00000146834	23	0	0.00	23	13	35.14	-	-	-
MFSD11	0	genome.wustl.edu	37	17	74772590	74772590	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	74772590	74772590	C	T	SNP	MFSD11	ENST00000585865	human	ensembl	69_37n	+1	putative	missense	c.415	p.R139C	0.218	superfamily_MFS_dom_general_subst_transpt	superfamily_MFS_dom_general_subst_transpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	MFSD11	HGNC	ENSG00000092931	103	0	0.00	114	69	37.70	-	-	-
NDNF	0	genome.wustl.edu	37	4	121966920	121966920	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	4	121966920	121966920	G	A	SNP	NDNF	ENST00000379692	human	ensembl	69_37n	-1	known	missense	c.73	p.R25W	0.979	NULL	pfam_DUF2369,superfamily_Fibronectin_type3,smart_Fibronectin_type3	-	no_errors	NDNF	HGNC	ENSG00000173376	42	0	0.00	53	13	19.70	-	-	-
NEK8	0	genome.wustl.edu	37	17	27068449	27068449	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	17	27068449	27068449	G	C	SNP	NEK8	ENST00000268766	human	ensembl	69_37n	+1	known	missense	c.1910	p.W637S	1.000	pfam_Reg_chr_condens,superfamily_Reg_csome_cond/b-lactamase_inh,pfscan_Reg_chr_condens,prints_Reg_chr_condens	pfam_Prot_kinase_cat_dom,pfam_Reg_chr_condens,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Reg_csome_cond/b-lactamase_inh,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Reg_chr_condens,pfscan_Prot_kinase_cat_dom,prints_Reg_chr_condens,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK8	HGNC	ENSG00000160602	80	0	0.00	21	26	54.17	-	-	-
OR6C2	0	genome.wustl.edu	37	12	55846918	55846918	+	Silent	SNP	A	A	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	12	55846918	55846918	A	G	SNP	OR6C2	ENST00000322678	human	ensembl	69_37n	+1	known	silent	c.921	p.A307	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR6C2	HGNC	ENSG00000179695	171	0	0.00	131	83	38.60	-	-	-
PADI4	0	genome.wustl.edu	37	1	17668843	17668843	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	17668843	17668843	C	T	SNP	PADI4	ENST00000375448	human	ensembl	69_37n	+1	known	missense	c.881	p.A294V	0.995	pfam_PAD_C,pirsf_Protein-arginine_deiminase_sub	pfam_PAD_C,pfam_Prot_Arg_deaminase_cen_dom,pfam_PAD_N,superfamily_Prot_Arg_deaminase_cen_dom,superfamily_Cupredoxin,pirsf_Protein-arginine_deiminase_sub	-	no_errors	PADI4	HGNC	ENSG00000159339	57	0	0.00	31	30	49.18	-	-	-
PALM3	0	genome.wustl.edu	37	19	14165287	14165287	+	Silent	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	14165287	14165287	C	T	SNP	PALM3	ENST00000340790	human	ensembl	69_37n	-1	known	silent	c.1152	p.T384	0.000	NULL	NULL	-	no_errors	PALM3	HGNC	ENSG00000187867	169	0	0.00	251	77	23.40	-	-	-
PLXNA1	0	genome.wustl.edu	37	3	126736736	126736736	+	Splice_Site	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	3	126736736	126736736	G	A	SNP	PLXNA1	ENST00000393409	human	ensembl	69_37n	+1	known	splice_site	c.3660+1	e18+1	1.000	-	-	-	no_errors	PLXNA1	HGNC	ENSG00000114554	10	0	0.00	7	8	53.33	-	-	-
PTCHD1	0	genome.wustl.edu	37	X	23397729	23397729	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	X	23397729	23397729	A	T	SNP	PTCHD1	ENST00000379361	human	ensembl	69_37n	+1	known	missense	c.373	p.I125F	1.000	pfam_Patched	pfam_Patched,pfscan_SSD	-	no_errors	PTCHD1	HGNC	ENSG00000165186	45	0	0.00	49	18	26.87	-	-	-
SKIDA1	0	genome.wustl.edu	37	10	21804124	21804124	+	Frame_Shift_Del	DEL	A	A	-			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	10	21804124	21804124	A	-	DEL	SKIDA1	ENST00000449193	human	ensembl	69_37n	-1	known	frame_shift_del	c.2628	p.Q877fs	1.000	NULL	pfam_Transform_Ski,superfamily_DNA-bd_dom_put	-	no_errors	SKIDA1	HGNC	ENSG00000180592	107	0	0.00	64	41	38.32	-	-	-
SLC9A1	0	genome.wustl.edu	37	1	27436074	27436074	+	Silent	SNP	G	G	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	27436074	27436074	G	C	SNP	SLC9A1	ENST00000263980	human	ensembl	69_37n	-1	known	silent	c.1008	p.L336	1.000	pfam_Cation/H_exchanger,tigrfam_NaH_exchanger	pfam_Cation/H_exchanger,prints_Na/H_exchanger_1,prints_NaH_exchanger,tigrfam_NaH_exchanger	-	no_errors	SLC9A1	HGNC	ENSG00000090020	47	0	0.00	30	17	36.17	-	-	-
SLC9C2	0	genome.wustl.edu	37	1	173542380	173542380	+	Silent	SNP	G	G	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	1	173542380	173542380	G	A	SNP	SLC9C2	ENST00000367714	human	ensembl	69_37n	-1	known	silent	c.987	p.H329	0.010	pfam_Cation/H_exchanger	pfam_Cation/H_exchanger,pfam_cNMP-bd_dom,superfamily_cNMP-bd-like,pfscan_cNMP-bd_dom	-	no_errors	SLC9C2	HGNC	ENSG00000162753	73	0	0.00	79	25	23.81	-	-	-
SSPO	0	genome.wustl.edu	37	7	149484837	149484838	+	RNA	INS	-	-	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	7	149484837	149484838	-	C	INS	SSPO	ENST00000262089	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000:1.000	-	-	-	no_errors	SSPO	HGNC	ENSG00000197558	11	0	0.00	4	2	33.33	-	-	-
TET3	0	genome.wustl.edu	37	2	74329151	74329152	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	2	74329151	74329152	-	G	INS	TET3	ENST00000409262	human	ensembl	69_37n	+1	known	frame_shift_ins	c.4831_4832	p.T1614fs	1.000:1.000	NULL	NULL	-	no_errors	TET3	HGNC	ENSG00000187605	28	0	0.00	28	4	12.50	-	-	-
TRIP11	0	genome.wustl.edu	37	14	92499550	92499550	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	14	92499550	92499550	T	C	SNP	TRIP11	ENST00000267622	human	ensembl	69_37n	-1	known	missense	c.187	p.I63V	0.513	NULL	superfamily_Ribosomal_L29,pfscan_GRIP	-	no_errors	TRIP11	HGNC	ENSG00000100815	38	0	0.00	26	8	23.53	-	-	-
TST	0	genome.wustl.edu	37	22	37407107	37407108	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	22	37407107	37407108	-	G	INS	TST	ENST00000249042	human	ensembl	69_37n	-1	known	frame_shift_ins	c.855_854	p.E286fs	0.014:0.995	superfamily_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,smart_Rhodanese-like_dom,pfscan_Rhodanese-like_dom	-	no_errors	TST	HGNC	ENSG00000128311	26	0	0.00	25	3	10.71	-	-	-
UPF1	0	genome.wustl.edu	37	19	18965708	18965708	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	18965708	18965708	C	T	SNP	UPF1	ENST00000262803	human	ensembl	69_37n	+1	known	missense	c.1286	p.T429M	0.997	NULL	pfam_RNA-helicase_UPF1_UPF2-interct,pfam_Helicase/UvrB_dom	-	no_errors	UPF1	HGNC	ENSG00000005007	82	0	0.00	31	22	41.51	-	-	-
ZNF578	0	genome.wustl.edu	37	19	53014601	53014601	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0CQ-01A-21W-A050-09	TCGA-A2-A0CQ-10A-01W-A055-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	fa0d7183-8757-4f95-87b2-2366a1dbd508	a300b0ed-eb05-4a95-8947-258940ad090b	19	53014601	53014601	T	A	SNP	ZNF578	ENST00000421239	human	ensembl	69_37n	+1	known	missense	c.967	p.S323T	0.016	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF578	HGNC	ENSG00000258405	135	0	0.00	126	72	36.36	-	-	-
