Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CDK5RAP2	0	genome.wustl.edu	37	9	123210362	123210362	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	9	123210362	123210362	G	A	SNP	CDK5RAP2	ENST00000349780	human	ensembl	69_37n	-1	known	missense	c.2836	p.R946W	0.008	NULL	pfam_Spindle_assoc	-	no_errors	CDK5RAP2	HGNC	ENSG00000136861	156	0	0.00	139	22	13.66	-	-	-
CTAGE5	0	genome.wustl.edu	37	14	39788473	39788473	+	Silent	SNP	T	T	A			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	14	39788473	39788473	T	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	+1	known	silent	c.1536	p.V512	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	114	0	0.00	101	32	24.06	-	-	-
CTAGE5	0	genome.wustl.edu	37	14	39788474	39788474	+	Missense_Mutation	SNP	C	C	A			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	14	39788474	39788474	C	A	SNP	CTAGE5	ENST00000396158	human	ensembl	69_37n	+1	known	missense	c.1537	p.P513T	1.000	NULL	NULL	-	no_errors	CTAGE5	HGNC	ENSG00000150527	114	0	0.00	99	33	25.00	-	-	-
MAP2K5	0	genome.wustl.edu	37	15	67873162	67873162	+	Splice_Site	SNP	G	G	C			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	15	67873162	67873162	G	C	SNP	MAP2K5	ENST00000178640	human	ensembl	69_37n	+1	known	splice_site	c.322+1	e4+1	1.000	-	-	-	no_errors	MAP2K5	HGNC	ENSG00000137764	169	0	0.00	137	41	23.03	-	-	-
MEFV	0	genome.wustl.edu	37	16	3306365	3306365	+	Silent	SNP	G	G	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	16	3306365	3306365	G	T	SNP	MEFV	ENST00000219596	human	ensembl	69_37n	-1	known	silent	c.223	p.R75	0.351	pfam_DAPIN,superfamily_DEATH-like,pfscan_DAPIN	pfam_DAPIN,pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,superfamily_DEATH-like,smart_Znf_B-box,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_DAPIN,pfscan_Znf_B-box,prints_Butyrophylin	-	no_errors	MEFV	HGNC	ENSG00000103313	26	0	0.00	17	6	26.09	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178921553	178921553	+	Missense_Mutation	SNP	T	T	A			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	3	178921553	178921553	T	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1035	p.N345K	1.000	superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_C2_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0.00	39	10	20.41	-	-	-
POTEE	0	genome.wustl.edu	37	2	132022031	132022031	+	Silent	SNP	C	C	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	2	132022031	132022031	C	T	SNP	POTEE	ENST00000356920	human	ensembl	69_37n	+1	known	silent	c.3003	p.G1001	1.000	pfam_Actin-like,smart_Actin-like	pfam_Actin-like,pfam_Ankyrin_rpt,smart_Ankyrin_rpt,smart_Actin-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Actin-like	-	no_errors	AC131180.1	Clone_based_ensembl_gene	ENSG00000188219	8	0	0.00	8	8	50.00	-	-	-
PRIC285	0	genome.wustl.edu	37	20	62193251	62193251	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	20	62193251	62193251	G	-	DEL	PRIC285	ENST00000467148	human	ensembl	69_37n	-1	known	frame_shift_del	c.6616	p.R2206fs	0.000	NULL	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	RP4-697K14.7	Clone_based_vega_gene	ENSG00000130589	12	0	0.00	6	3	33.33	-	-	-
RASGEF1C	0	genome.wustl.edu	37	5	179564989	179564989	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	5	179564989	179564989	C	T	SNP	RASGEF1C	ENST00000361132	human	ensembl	69_37n	-1	known	missense	c.64	p.E22K	0.454	NULL	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGEF1C	HGNC	ENSG00000146090	64	0	0.00	36	21	36.21	-	-	-
SCN9A	0	genome.wustl.edu	37	2	167099093	167099093	+	Silent	SNP	C	C	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	2	167099093	167099093	C	T	SNP	SCN9A	ENST00000303354	human	ensembl	69_37n	-1	known	silent	c.3549	p.R1183	0.995	pfam_Na_trans_assoc	pfam_Ion_trans_dom,pfam_DUF3451,pfam_Na_trans_assoc,pfam_PKD1_2_channel,smart_IQ_motif_EF-hand-BS,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN9A	HGNC	ENSG00000169432	149	0	0.00	135	27	16.67	-	-	-
SIPA1L3	0	genome.wustl.edu	37	19	38655323	38655323	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	19	38655323	38655323	C	T	SNP	SIPA1L3	ENST00000222345	human	ensembl	69_37n	+1	known	missense	c.3985	p.P1329S	0.016	NULL	pfam_DUF3401,pfam_Rap_GAP,superfamily_PDZ,smart_PDZ,pfscan_PDZ,pfscan_Rap_GAP	-	no_errors	SIPA1L3	HGNC	ENSG00000105738	38	0	0.00	32	5	13.51	-	-	-
SPEN	0	genome.wustl.edu	37	1	16258660	16258661	+	Frame_Shift_Del	DEL	CA	CA	-			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	1	16258660	16258661	CA	-	DEL	SPEN	ENST00000375759	human	ensembl	69_37n	+1	known	frame_shift_del	c.5925_5926	p.K1976fs	0.124:0.296	NULL	pfam_RRM_dom,pfam_SPOC_C,superfamily_SPOC-like,smart_RRM_dom,pfscan_SPOC_met,pfscan_RRM_dom	-	no_errors	SPEN	HGNC	ENSG00000065526	13	0	0.00	6	3	33.33	-	-	-
THSD7A	0	genome.wustl.edu	37	7	11509516	11509516	+	Silent	SNP	C	C	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	7	11509516	11509516	C	T	SNP	THSD7A	ENST00000423059	human	ensembl	69_37n	-1	known	silent	c.2358	p.S786	0.006	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	-	no_errors	THSD7A	HGNC	ENSG00000005108	70	0	0.00	52	12	18.75	-	-	-
TRPC5	0	genome.wustl.edu	37	X	111155993	111155993	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	X	111155993	111155993	G	T	SNP	TRPC5	ENST00000262839	human	ensembl	69_37n	-1	known	missense	c.426	p.D142E	1.000	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC5_channel,prints_TRPC_channel,tigrfam_TRP_channel	-	no_errors	TRPC5	HGNC	ENSG00000072315	136	0	0.00	96	28	22.58	-	-	-
ZNFX1	0	genome.wustl.edu	37	20	47881273	47881273	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A0YI-01A-31D-A10M-09	TCGA-A2-A0YI-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d2ae968-c977-4b65-869a-5e96ff3216e9	9764d7b0-0bbc-44e5-9207-2215d542ed54	20	47881273	47881273	G	T	SNP	ZNFX1	ENST00000371752	human	ensembl	69_37n	-1	known	missense	c.2131	p.L711I	1.000	NULL	superfamily_ARM-type_fold,smart_Znf_NFX1	-	no_errors	ZNFX1	HGNC	ENSG00000124201	162	0	0.00	118	27	18.62	-	-	-
