Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAT3	0	genome.wustl.edu	37	19	1912236	1912236	+	Missense_Mutation	SNP	G	G	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	1912236	1912236	G	T	SNP	ADAT3	ENST00000329478	human	ensembl	69_37n	+1	known	missense	c.142	p.A48S	0.675	NULL	pfam_CMP_dCMP_Zn-bd,superfamily_Cytidine_deaminase-like	-	no_errors	ADAT3	HGNC	ENSG00000213638	13	0	0.00	5	7	58.33	-	-	-
ALPPL2	0	genome.wustl.edu	37	2	233274416	233274416	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	2	233274416	233274416	C	T	SNP	ALPPL2	ENST00000295453	human	ensembl	69_37n	+1	known	missense	c.1433	p.A478V	1.000	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase	pfam_Alkaline_phosphatase,superfamily_Alkaline_phosphatase_core,smart_Alkaline_phosphatase,prints_Alkaline_phosphatase	-	no_errors	ALPPL2	HGNC	ENSG00000163286	39	0	0.00	15	16	51.61	-	-	-
AMPD1	0	genome.wustl.edu	37	1	115221144	115221144	+	Missense_Mutation	SNP	T	T	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	1	115221144	115221144	T	C	SNP	AMPD1	ENST00000520113	human	ensembl	69_37n	-1	known	missense	c.1001	p.D334G	1.000	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	pfam_A/AMP_deaminase_dom,pirsf_AMP_deaminase,tigrfam_AMP_deaminase	-	no_errors	AMPD1	HGNC	ENSG00000116748	48	0	0.00	43	6	12.00	-	-	-
ASB10	0	genome.wustl.edu	37	7	150884267	150884268	+	Frame_Shift_Del	DEL	AG	AG	-			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	7	150884267	150884268	AG	-	DEL	ASB10	ENST00000422024	human	ensembl	69_37n	-1	known	frame_shift_del	c.86_85	p.L29fs	0.003:0.000	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB10	HGNC	ENSG00000146926	32	0	0.00	41	7	14.58	-	-	-
CACNA1H	0	genome.wustl.edu	37	16	1252141	1252141	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	16	1252141	1252141	G	A	SNP	CACNA1H	ENST00000348261	human	ensembl	69_37n	+1	known	missense	c.1691	p.R564H	0.000	NULL	pfam_Ion_trans_dom,pfam_PKD1_2_channel,prints_VDCC_T_a1su,prints_PKD_2	-	no_errors	CACNA1H	HGNC	ENSG00000196557	12	0	0.00	11	4	26.67	-	-	-
CIZ1	0	genome.wustl.edu	37	9	130940822	130940822	+	RNA	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	9	130940822	130940822	C	T	SNP	CIZ1	ENST00000475471	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.021	-	-	-	no_errors	CIZ1	HGNC	ENSG00000148337	34	0	0.00	25	4	13.79	-	-	-
ELN	0	genome.wustl.edu	37	7	73457489	73457489	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	7	73457489	73457489	A	G	SNP	ELN	ENST00000358929	human	ensembl	69_37n	+1	known	missense	c.418	p.K140E	1.000	NULL	prints_Tropoelastin	-	no_errors	ELN	HGNC	ENSG00000049540	38	0	0.00	23	17	42.50	-	-	-
F8	0	genome.wustl.edu	37	X	154156942	154156942	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	X	154156942	154156942	C	T	SNP	F8	ENST00000360256	human	ensembl	69_37n	-1	known	missense	c.5123	p.R1708H	1.000	NULL	pfam_Coagulation_fac_5/8-C_type_dom,pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Galactose-bd-like,superfamily_Cupredoxin,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	F8	HGNC	ENSG00000185010	50	0	0.00	71	9	11.25	-	-	-
FABP5P3	0	genome.wustl.edu	37	7	152139854	152139854	+	RNA	SNP	A	A	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	7	152139854	152139854	A	C	SNP	FABP5P3	ENST00000477993	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.998	-	-	-	no_errors	FABP5P3	HGNC	ENSG00000241735	35	0	0.00	48	8	14.29	-	-	-
FARP1	0	genome.wustl.edu	37	13	99088137	99088137	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	99088137	99088137	G	A	SNP	FARP1	ENST00000423063	human	ensembl	69_37n	+1	known	missense	c.359	p.R120Q	0.000	NULL	superfamily_DH-domain	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FARP1	HGNC	ENSG00000152767	115	0	0.00	184	32	14.81	-	-	-
FASN	0	genome.wustl.edu	37	17	80047015	80047015	+	Missense_Mutation	SNP	A	A	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	17	80047015	80047015	A	T	SNP	FASN	ENST00000306749	human	ensembl	69_37n	-1	known	missense	c.2134	p.W712R	1.000	pfam_Acyl_transferase,superfamily_Acyl_Trfase/lysoPLipase,smart_PKS_acyl_transferase	pfam_Acyl_transferase,pfam_Ketoacyl_synth_N,pfam_Thioesterase,pfam_PKS_KR,pfam_DH_sc/Rdtase_SDR,pfam_Ketoacyl_synth_C,pfam_ADH_C,pfam_Acyl_carrier_prot-like,pfam_Methyltransf_12,pfam_Methyltransf_11,superfamily_Thiolase-like,superfamily_Acyl_Trfase/lysoPLipase,superfamily_GroES-like,superfamily_Acyl_carrier_prot-like,superfamily_Malonyl_transacylase_ACP-bd,smart_PKS_Beta-ketoAc_synthase_dom,smart_PKS_acyl_transferase,smart_PKS_dehydratase,smart_PKS_ER,smart_PKS/FAS_KR,smart_PKS_PP-bd,pfscan_Acyl_carrier_prot-like	-	no_errors	FASN	HGNC	ENSG00000169710	139	0	0.00	52	85	62.04	-	-	-
FLJ37453	0	genome.wustl.edu	37	1	16161867	16161867	+	RNA	SNP	A	A	G			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	1	16161867	16161867	A	G	SNP	FLJ37453	ENST00000317122	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RP11-169K16.9	Clone_based_vega_gene	ENSG00000179743	71	0	0.00	50	7	12.28	-	-	-
GRID2	0	genome.wustl.edu	37	4	94138242	94138242	+	RNA	SNP	A	A	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	4	94138242	94138242	A	T	SNP	GRID2	ENST00000505687	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.036	-	-	-	no_errors	GRID2	HGNC	ENSG00000152208	8	0	0.00	4	4	50.00	-	-	-
HEATR7B1	0	genome.wustl.edu	37	2	234716426	234716426	+	Silent	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	2	234716426	234716426	G	A	SNP	HEATR7B1	ENST00000389758	human	ensembl	69_37n	+1	novel	silent	c.2220	p.T740	0.818	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	HEATR7B1	HGNC	ENSG00000185038	88	0	0.00	62	7	10.14	-	-	-
ITPR1	0	genome.wustl.edu	37	3	4821278	4821278	+	Silent	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	4821278	4821278	C	T	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	+1	known	silent	c.6291	p.H2097	0.986	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	59	0	0.00	64	11	14.47	-	-	-
KAT2B	0	genome.wustl.edu	37	3	20167543	20167543	+	Silent	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	20167543	20167543	C	T	SNP	KAT2B	ENST00000263754	human	ensembl	69_37n	+1	known	silent	c.1560	p.N520	0.918	pirsf_Hist_acetylase_PCAF,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pirsf_Hist_acetylase_PCAF,pfam_PCAF_N,pfam_Bromodomain,pfam_GNAT_dom,superfamily_Bromodomain,superfamily_Acyl_CoA_acyltransferase,smart_Bromodomain,pfscan_Bromodomain,pfscan_GNAT_dom,prints_Bromodomain	-	no_errors	KAT2B	HGNC	ENSG00000114166	81	0	0.00	78	13	14.29	-	-	-
KLC3	0	genome.wustl.edu	37	19	45848849	45848849	+	Missense_Mutation	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	45848849	45848849	G	A	SNP	KLC3	ENST00000470402	human	ensembl	69_37n	+1	known	missense	c.92	p.R31H	0.999	NULL	pfam_Rabaptin_Rab5-bd_dom,pfam_TPR-1,smart_TPR_repeat,prints_Kinesin_light,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	KLC3	HGNC	ENSG00000104892	23	0	0.00	10	7	41.18	-	-	-
LMX1B	0	genome.wustl.edu	37	9	129458653	129458653	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	9	129458653	129458653	G	C	SNP	LMX1B	ENST00000355497	human	ensembl	69_37n	+1	known	missense	c.1144	p.V382L	1.000	NULL	pfam_Znf_LIM,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Znf_LIM,smart_Homeodomain,pfscan_Znf_LIM,pfscan_Homeodomain	-	no_errors	LMX1B	HGNC	ENSG00000136944	39	0	0.00	21	27	56.25	-	-	-
LRRC32	0	genome.wustl.edu	37	11	76377014	76377014	+	RNA	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	11	76377014	76377014	G	A	SNP	LRRC32	ENST00000464145	human	ensembl	69_37n	-1	putative	rna	NULL	NULL	0.000	-	-	-	no_errors	LRRC32	HGNC	ENSG00000137507	50	0	0.00	22	17	43.59	-	-	-
NAA11	0	genome.wustl.edu	37	4	80246828	80246828	+	Silent	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	4	80246828	80246828	C	T	SNP	NAA11	ENST00000286794	human	ensembl	69_37n	-1	known	silent	c.204	p.P68	0.615	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	pfam_GNAT_dom,pfam_FR47,superfamily_Acyl_CoA_acyltransferase,pfscan_GNAT_dom	-	no_errors	NAA11	HGNC	ENSG00000156269	34	0	0.00	34	8	19.05	-	-	-
NDUFS6	0	genome.wustl.edu	37	5	1814783	1814783	+	Nonstop_Mutation	SNP	T	T	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	5	1814783	1814783	T	C	SNP	NDUFS6	ENST00000469176	human	ensembl	69_37n	+1	putative	nonstop	c.517	p.*173R	0.001	NULL	pfam_Znf_CHCC	-	no_errors	NDUFS6	HGNC	ENSG00000145494	18	0	0.00	14	4	22.22	-	-	-
NRXN1	0	genome.wustl.edu	37	2	51255149	51255149	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	2	51255149	51255149	C	T	SNP	NRXN1	ENST00000402717	human	ensembl	69_37n	-1	known	missense	c.263	p.R88H	1.000	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,pfscan_Laminin_G	pfam_Laminin_G,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_EGF-like,smart_Neurexin-like,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	NRXN1	HGNC	ENSG00000179915	13	0	0.00	16	5	23.81	-	-	-
PCDH20	0	genome.wustl.edu	37	13	61987039	61987039	+	Missense_Mutation	SNP	A	A	G			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	61987039	61987039	A	G	SNP	PCDH20	ENST00000409186	human	ensembl	69_37n	-1	known	missense	c.1193	p.I398T	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH20	HGNC	ENSG00000197991	37	0	0.00	15	18	54.55	-	-	-
PROS1	0	genome.wustl.edu	37	3	93619729	93619729	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	3	93619729	93619729	C	T	SNP	PROS1	ENST00000394236	human	ensembl	69_37n	-1	known	missense	c.646	p.V216M	0.998	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_Ca-bd,pfam_GLA_domain,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,superfamily_GLA_domain,smart_GLA_domain,smart_EGF-like_Ca-bd,smart_EGF-like,smart_Laminin_G,pfscan_EG-like_dom,pfscan_GLA_domain,pfscan_Laminin_G,prints_GLA_domain	-	no_errors	PROS1	HGNC	ENSG00000184500	76	0	0.00	38	39	50.65	-	-	-
PTK2B	0	genome.wustl.edu	37	8	27287611	27287611	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	8	27287611	27287611	C	T	SNP	PTK2B	ENST00000346049	human	ensembl	69_37n	+1	known	missense	c.553	p.R185W	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2B	HGNC	ENSG00000120899	127	0	0.00	84	20	19.23	-	-	-
RB1	0	genome.wustl.edu	37	13	48947596	48947597	+	Frame_Shift_Ins	INS	-	-	AA			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	48947596	48947597	-	AA	INS	RB1	ENST00000267163	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1183_1184	p.P396fs	1.000:1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	27	0	0.00	32	17	34.69	-	-	-
RB1	0	genome.wustl.edu	37	13	48947599	48947599	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	13	48947599	48947599	C	T	SNP	RB1	ENST00000267163	human	ensembl	69_37n	+1	known	missense	c.1186	p.P396S	1.000	pfam_RB_A,superfamily_Cyclin-like	pfam_Rb_C,pfam_RB_A,pfam_RB_B,pfam_DUF3452_retinoblatoma-assoc,superfamily_Cyclin-like,superfamily_FH2_actin-bd,smart_Cyclin-like	-	no_errors	RB1	HGNC	ENSG00000139687	27	0	0.00	30	19	38.00	-	-	-
RPS25	0	genome.wustl.edu	37	11	118888095	118888095	+	Missense_Mutation	SNP	G	G	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	11	118888095	118888095	G	C	SNP	RPS25	ENST00000527673	human	ensembl	69_37n	-1	known	missense	c.260	p.A87G	1.000	pfam_Ribosomal_S25	pfam_Ribosomal_S25	-	no_errors	RPS25	HGNC	ENSG00000118181	48	0	0.00	35	11	23.91	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158650380	158650380	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	1	158650380	158650380	C	T	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	missense	c.671	p.C224Y	0.998	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	105	0	0.00	104	13	11.11	-	-	-
TP53	0	genome.wustl.edu	37	17	7577558	7577558	+	Frame_Shift_Del	DEL	G	G	-			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	17	7577558	7577558	G	-	DEL	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	frame_shift_del	c.723	p.C242fs	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	112	0	0.00	64	46	41.07	-	-	-
TUBB3	0	genome.wustl.edu	37	16	90001580	90001580	+	Missense_Mutation	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	16	90001580	90001580	C	T	SNP	TUBB3	ENST00000315491	human	ensembl	69_37n	+1	known	missense	c.721	p.R241C	1.000	superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Gamma_tubulin,prints_Delta_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB3	Clone_based_vega_gene	ENSG00000258947	142	0	0.00	113	27	19.29	-	-	-
WHAMMP2	0	genome.wustl.edu	37	15	28991148	28991148	+	RNA	SNP	G	G	C			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	15	28991148	28991148	G	C	SNP	WHAMMP2	ENST00000508764	human	ensembl	69_37n	+1	putative	rna	NULL	NULL	1.000	-	-	-	no_errors	WHAMMP2	HGNC	ENSG00000248334	67	0	0.00	40	5	11.11	-	-	-
XIST	0	genome.wustl.edu	37	X	73042610	73042610	+	RNA	SNP	G	G	A			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	X	73042610	73042610	G	A	SNP	XIST	ENST00000429829	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	XIST	HGNC	ENSG00000229807	65	0	0.00	39	39	50.00	-	-	-
ZNF613	0	genome.wustl.edu	37	19	52443551	52443551	+	Silent	SNP	C	C	T			TCGA-A2-A3XS-01A-11D-A22X-09	TCGA-A2-A3XS-10A-01D-A22X-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	cbed906d-982b-4040-8850-7d7bacf798b7	5ac31689-63f4-49e4-8a06-a822d0ff828a	19	52443551	52443551	C	T	SNP	ZNF613	ENST00000293471	human	ensembl	69_37n	+1	known	silent	c.105	p.D35	0.958	pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,pfscan_Krueppel-associated_box	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF613	HGNC	ENSG00000176024	112	0	0.00	104	26	20.00	-	-	-
