Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM21P1	0	genome.wustl.edu	37	14	70712917	70712917	+	RNA	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	14	70712917	70712917	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	76	0	0.00	51	8	13.56	-	-	-
ADAM21P1	0	genome.wustl.edu	37	14	70712917	70712917	+	RNA	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	14	70712917	70712917	A	G	SNP	ADAM21P1	ENST00000530196	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ADAM21P1	HGNC	ENSG00000235812	57	0	0.00	51	8	13.56	-	-	-
BOLA1	0	genome.wustl.edu	37	1	149871946	149871946	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	1	149871946	149871946	G	A	SNP	BOLA1	ENST00000369150	human	ensembl	69_37n	+1	known	missense	c.334	p.A112T	0.522	pfam_BolA,superfamily_BolA	pfam_BolA,superfamily_BolA	-	no_errors	BOLA1	HGNC	ENSG00000178096	64	0	0.00	53	7	11.67	-	-	-
BOLA1	0	genome.wustl.edu	37	1	149871946	149871946	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	1	149871946	149871946	G	A	SNP	BOLA1	ENST00000369150	human	ensembl	69_37n	+1	known	missense	c.334	p.A112T	0.522	pfam_BolA,superfamily_BolA	pfam_BolA,superfamily_BolA	-	no_errors	BOLA1	HGNC	ENSG00000178096	65	0	0.00	53	7	11.67	-	-	-
BRF2	0	genome.wustl.edu	37	8	37702522	37702522	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	8	37702522	37702522	C	T	SNP	BRF2	ENST00000220659	human	ensembl	69_37n	-1	known	missense	c.746	p.R249Q	0.514	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221	47	0	0.00	35	7	16.67	-	-	-
BRF2	0	genome.wustl.edu	37	8	37702522	37702522	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	8	37702522	37702522	C	T	SNP	BRF2	ENST00000220659	human	ensembl	69_37n	-1	known	missense	c.746	p.R249Q	0.514	superfamily_Cyclin-like	pfam_Znf_TFIIB,superfamily_Cyclin-like,pfscan_Znf_TFIIB	-	no_errors	BRF2	HGNC	ENSG00000104221	54	0	0.00	35	7	16.67	-	-	-
C2CD3	0	genome.wustl.edu	37	11	73849826	73849826	+	Silent	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	73849826	73849826	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	silent	c.894	p.K298	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	42	0	0.00	27	8	22.86	-	-	-
C2CD3	0	genome.wustl.edu	37	11	73849826	73849826	+	Silent	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	11	73849826	73849826	C	T	SNP	C2CD3	ENST00000334126	human	ensembl	69_37n	-1	known	silent	c.894	p.K298	1.000	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep	-	no_errors	C2CD3	HGNC	ENSG00000168014	31	0	0.00	27	8	22.86	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862103	68862103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	16	68862103	68862103	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.2191	p.L731fs	0.037	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	186	0	0.00	82	27	24.11	-	-	-
CDH1	0	genome.wustl.edu	37	16	68862103	68862103	+	Frame_Shift_Del	DEL	C	C	-			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	16	68862103	68862103	C	-	DEL	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_del	c.2191	p.L731fs	0.037	NULL	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	148	0	0.00	82	27	24.11	-	-	-
CHD4	0	genome.wustl.edu	37	12	6702280	6702280	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	6702280	6702280	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2629	p.R877W	0.999	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	37	0	0.00	18	4	18.18	-	-	-
CHD4	0	genome.wustl.edu	37	12	6702280	6702280	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	12	6702280	6702280	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	missense	c.2629	p.R877W	0.999	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	28	0	0.00	18	4	18.18	-	-	-
CYP4A22	0	genome.wustl.edu	37	1	47611572	47611572	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	1	47611572	47611572	C	A	SNP	CYP4A22	ENST00000371891	human	ensembl	69_37n	+1	known	missense	c.1257	p.H419Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365	128	0	0.00	88	17	16.19	-	-	-
CYP4A22	0	genome.wustl.edu	37	1	47611572	47611572	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	1	47611572	47611572	C	A	SNP	CYP4A22	ENST00000371891	human	ensembl	69_37n	+1	known	missense	c.1257	p.H419Q	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-II	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450,prints_Cyt_P450_E_grp-II,prints_Cyt_P450_E_grp-IV	-	no_errors	CYP4A22	HGNC	ENSG00000162365	143	0	0.00	88	17	16.19	-	-	-
DMD	0	genome.wustl.edu	37	X	32361404	32361404	+	Splice_Site	SNP	C	C	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	X	32361404	32361404	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	splice_site	c.5587-1	e40-1	1.000	-	-	-	no_errors	DMD	HGNC	ENSG00000198947	74	0	0.00	40	15	27.27	-	-	-
DMD	0	genome.wustl.edu	37	X	32361404	32361404	+	Splice_Site	SNP	C	C	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	X	32361404	32361404	C	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	splice_site	c.5587-1	e40-1	1.000	-	-	-	no_errors	DMD	HGNC	ENSG00000198947	51	0	0.00	40	15	27.27	-	-	-
EYS	0	genome.wustl.edu	37	6	65655792	65655792	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	6	65655792	65655792	A	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.2275	p.C759R	0.874	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	45	0	0.00	31	5	13.89	-	-	-
EYS	0	genome.wustl.edu	37	6	65655792	65655792	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	6	65655792	65655792	A	G	SNP	EYS	ENST00000370616	human	ensembl	69_37n	-1	known	missense	c.2275	p.C759R	0.874	smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_Laminin_G,pfam_EGF-like_dom,superfamily_ConA-like_lec_gl,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G	-	no_errors	EYS	HGNC	ENSG00000188107	52	0	0.00	31	5	13.89	-	-	-
FIBIN	0	genome.wustl.edu	37	11	27016341	27016341	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	27016341	27016341	C	A	SNP	FIBIN	ENST00000318627	human	ensembl	69_37n	+1	known	missense	c.268	p.Q90K	1.000	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971	49	0	0.00	36	8	18.18	-	-	-
FIBIN	0	genome.wustl.edu	37	11	27016341	27016341	+	Missense_Mutation	SNP	C	C	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	11	27016341	27016341	C	A	SNP	FIBIN	ENST00000318627	human	ensembl	69_37n	+1	known	missense	c.268	p.Q90K	1.000	NULL	NULL	-	no_errors	FIBIN	HGNC	ENSG00000176971	49	0	0.00	36	8	18.18	-	-	-
HOXA11	0	genome.wustl.edu	37	7	27224434	27224434	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	7	27224434	27224434	G	T	SNP	HOXA11	ENST00000006015	human	ensembl	69_37n	-1	known	missense	c.330	p.S110R	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXA11	HGNC	ENSG00000005073	63	0	0.00	45	12	21.05	-	-	-
HOXA11	0	genome.wustl.edu	37	7	27224434	27224434	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	7	27224434	27224434	G	T	SNP	HOXA11	ENST00000006015	human	ensembl	69_37n	-1	known	missense	c.330	p.S110R	1.000	pfam_DUF3528	pfam_DUF3528,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,prints_Homeobox_metazoa,pfscan_Homeodomain	-	no_errors	HOXA11	HGNC	ENSG00000005073	74	0	0.00	45	12	21.05	-	-	-
HYDIN	0	genome.wustl.edu	37	16	70993639	70993639	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	16	70993639	70993639	C	T	SNP	HYDIN	ENST00000316490	human	ensembl	69_37n	-1	known	missense	c.6050	p.R2017H	1.000	NULL	superfamily_PapD-like	-	no_errors	HYDIN	HGNC	ENSG00000157423	18	0	0.00	7	4	36.36	-	-	-
IQCG	0	genome.wustl.edu	37	3	197670789	197670789	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	197670789	197670789	C	T	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	missense	c.142	p.E48K	0.171	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	142	0	0.00	85	10	10.53	-	-	-
IQCG	0	genome.wustl.edu	37	3	197670789	197670789	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	3	197670789	197670789	C	T	SNP	IQCG	ENST00000265239	human	ensembl	69_37n	-1	known	missense	c.142	p.E48K	0.171	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCG	HGNC	ENSG00000114473	125	0	0.00	85	10	10.53	-	-	-
MAP3K12	0	genome.wustl.edu	37	12	53877488	53877488	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	53877488	53877488	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427K	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	21	0	0.00	12	3	20.00	-	-	-
MAP3K12	0	genome.wustl.edu	37	12	53877488	53877488	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	12	53877488	53877488	C	T	SNP	MAP3K12	ENST00000267079	human	ensembl	69_37n	-1	known	missense	c.1279	p.E427K	1.000	pirsf_MAP3K12_MAP3K13	pirsf_MAP3K12_MAP3K13,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K12	HGNC	ENSG00000139625	19	0	0.00	12	3	20.00	-	-	-
MCAM	0	genome.wustl.edu	37	11	119181178	119181178	+	Splice_Site	SNP	T	T	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	119181178	119181178	T	A	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	splice_site	c.1794-2	e15-2	1.000	-	-	-	no_errors	MCAM	HGNC	ENSG00000076706	40	0	0.00	27	5	15.62	-	-	-
MCAM	0	genome.wustl.edu	37	11	119181178	119181178	+	Splice_Site	SNP	T	T	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	11	119181178	119181178	T	A	SNP	MCAM	ENST00000264036	human	ensembl	69_37n	-1	known	splice_site	c.1794-2	e15-2	1.000	-	-	-	no_errors	MCAM	HGNC	ENSG00000076706	31	0	0.00	27	5	15.62	-	-	-
MCM3AP	0	genome.wustl.edu	37	21	47664837	47664837	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	21	47664837	47664837	G	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4922	p.A1641E	0.001	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	47	0	0.00	27	4	12.90	-	-	-
MCM3AP	0	genome.wustl.edu	37	21	47664837	47664837	+	Missense_Mutation	SNP	G	G	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	21	47664837	47664837	G	T	SNP	MCM3AP	ENST00000291688	human	ensembl	69_37n	-1	known	missense	c.4922	p.A1641E	0.001	NULL	pfam_SAC3/GANP/Nin1/mts3/eIF-3-p25	-	no_errors	MCM3AP	HGNC	ENSG00000160294	40	0	0.00	27	4	12.90	-	-	-
MGA	0	genome.wustl.edu	37	15	42058213	42058213	+	Missense_Mutation	SNP	T	T	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	15	42058213	42058213	T	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	+1	known	missense	c.7933	p.L2645V	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	37	0	0.00	17	9	34.62	-	-	-
MGA	0	genome.wustl.edu	37	15	42058213	42058213	+	Missense_Mutation	SNP	T	T	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	15	42058213	42058213	T	G	SNP	MGA	ENST00000219905	human	ensembl	69_37n	+1	known	missense	c.7933	p.L2645V	1.000	NULL	pfam_TF_T-box,pfam_HLH_DNA-bd,superfamily_p53-like_TF_DNA-bd,superfamily_HLH_DNA-bd,smart_TF_T-box,smart_HLH_DNA-bd,prints_TF_T-box,pfscan_HLH_DNA-bd,pfscan_TF_T-box	-	no_errors	MGA	HGNC	ENSG00000174197	35	0	0.00	17	9	34.62	-	-	-
MMP16	0	genome.wustl.edu	37	8	89053874	89053874	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	8	89053874	89053874	C	T	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.1639	p.D547N	1.000	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	94	0	0.00	58	7	10.77	-	-	-
MMP16	0	genome.wustl.edu	37	8	89053874	89053874	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	8	89053874	89053874	C	T	SNP	MMP16	ENST00000286614	human	ensembl	69_37n	-1	known	missense	c.1639	p.D547N	1.000	pfam_Pept_M10A_metallopeptidase_C	pirsf_Pept_M10A_matrix_strom,pfam_Hemopexin/matrixin_repeat,pfam_Pept_M10_metallopeptidase,pfam_Pept_M10A_metallopeptidase_C,pfam_Peptidoglycan-bd-like,superfamily_Hemopexin/matrixin,superfamily_Peptidoglycan-bd-like,smart_Peptidase_Metallo,smart_Hemopexin/matrixin_repeat,prints_Pept_M10A_matrixin	-	no_errors	MMP16	HGNC	ENSG00000156103	66	0	0.00	58	7	10.77	-	-	-
OR11H12	0	genome.wustl.edu	37	14	19377927	19377927	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	14	19377927	19377927	T	C	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	+1	known	missense	c.334	p.C112R	0.110	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	78	0	0.00	56	10	15.15	-	-	-
OR11H12	0	genome.wustl.edu	37	14	19377927	19377927	+	Missense_Mutation	SNP	T	T	C			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	14	19377927	19377927	T	C	SNP	OR11H12	ENST00000550708	human	ensembl	69_37n	+1	known	missense	c.334	p.C112R	0.110	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR11H12	Clone_based_vega_gene	ENSG00000257115	70	0	0.00	56	10	15.15	-	-	-
PBX2P1	0	genome.wustl.edu	37	3	142895516	142895516	+	RNA	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	142895516	142895516	G	A	SNP	PBX2P1	ENST00000560287	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	108	0	0.00	87	11	11.22	-	-	-
PBX2P1	0	genome.wustl.edu	37	3	142895516	142895516	+	RNA	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	3	142895516	142895516	G	A	SNP	PBX2P1	ENST00000560287	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	PBX2P1	HGNC	ENSG00000244171	95	0	0.00	87	11	11.22	-	-	-
PCCA	0	genome.wustl.edu	37	13	100982917	100982917	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	13	100982917	100982917	G	A	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	+1	known	missense	c.1532	p.G511D	1.000	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	41	0	0.00	33	7	17.50	-	-	-
PCCA	0	genome.wustl.edu	37	13	100982917	100982917	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	13	100982917	100982917	G	A	SNP	PCCA	ENST00000376285	human	ensembl	69_37n	+1	known	missense	c.1532	p.G511D	1.000	NULL	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,pfam_ATP-grasp_RimK-type,pfam_ATP-grasp_carboxylate-amine,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_Biotin_lipoyl	-	no_errors	PCCA	HGNC	ENSG00000175198	36	0	0.00	33	7	17.50	-	-	-
PCCB	0	genome.wustl.edu	37	3	136048838	136048838	+	Silent	SNP	T	T	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	136048838	136048838	T	G	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	+1	known	silent	c.1590	p.P530	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	67	0	0.00	39	9	18.75	-	-	-
PCCB	0	genome.wustl.edu	37	3	136048838	136048838	+	Silent	SNP	T	T	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	3	136048838	136048838	T	G	SNP	PCCB	ENST00000251654	human	ensembl	69_37n	+1	known	silent	c.1590	p.P530	1.000	pfam_Carboxyl_trans,pfscan_COA_CT_C	pfam_Carboxyl_trans,pfscan_COA_CT_N,pfscan_COA_CT_C	-	no_errors	PCCB	HGNC	ENSG00000114054	51	0	0.00	39	9	18.75	-	-	-
POLDIP2	0	genome.wustl.edu	37	17	26684529	26684529	+	RNA	DEL	G	G	-			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	17	26684529	26684529	G	-	DEL	POLDIP2	ENST00000003607	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.993	-	-	-	no_errors	POLDIP2	HGNC	ENSG00000004142	8	0	0.00	3	3	50.00	-	-	-
PSMD13	0	genome.wustl.edu	37	11	252640	252640	+	RNA	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	11	252640	252640	G	A	SNP	PSMD13	ENST00000532025	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMD13	HGNC	ENSG00000185627	60	0	0.00	38	5	11.63	-	-	-
PSMD13	0	genome.wustl.edu	37	11	252640	252640	+	RNA	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	11	252640	252640	G	A	SNP	PSMD13	ENST00000532025	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PSMD13	HGNC	ENSG00000185627	39	0	0.00	38	5	11.63	-	-	-
PTPRQ	0	genome.wustl.edu	37	12	81067076	81067076	+	Nonsense_Mutation	SNP	A	A	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	81067076	81067076	A	T	SNP	PTPRQ	ENST00000532722	human	ensembl	69_37n	+1	novel	nonsense	c.5821	p.R1941*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTPRQ	HGNC	ENSG00000139304	65	0	0.00	25	6	19.35	-	-	-
PTPRQ	0	genome.wustl.edu	37	12	81067076	81067076	+	Nonsense_Mutation	SNP	A	A	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	12	81067076	81067076	A	T	SNP	PTPRQ	ENST00000532722	human	ensembl	69_37n	+1	novel	nonsense	c.5821	p.R1941*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	pfam_Fibronectin_type3,pfam_Tyr_Pase_rcpt/non-rcpt,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pfscan_Fibronectin_type3,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	PTPRQ	HGNC	ENSG00000139304	58	0	0.00	25	6	19.35	-	-	-
RAD51AP2	0	genome.wustl.edu	37	2	17697546	17697546	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	2	17697546	17697546	A	G	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	missense	c.2137	p.C713R	0.012	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	47	0	0.00	40	6	13.04	-	-	-
RAD51AP2	0	genome.wustl.edu	37	2	17697546	17697546	+	Missense_Mutation	SNP	A	A	G			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	2	17697546	17697546	A	G	SNP	RAD51AP2	ENST00000399080	human	ensembl	69_37n	-1	known	missense	c.2137	p.C713R	0.012	NULL	NULL	-	no_errors	RAD51AP2	HGNC	ENSG00000214842	46	0	0.00	40	6	13.04	-	-	-
RFPL2	0	genome.wustl.edu	37	22	32587157	32587157	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	22	32587157	32587157	C	T	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	missense	c.739	p.V247M	0.812	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	167	0	0.00	100	21	17.36	-	-	-
RFPL2	0	genome.wustl.edu	37	22	32587157	32587157	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	22	32587157	32587157	C	T	SNP	RFPL2	ENST00000400237	human	ensembl	69_37n	-1	known	missense	c.739	p.V247M	0.812	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,prints_Butyrophylin,pfscan_B30.2/SPRY	-	no_errors	RFPL2	HGNC	ENSG00000128253	155	0	0.00	100	21	17.36	-	-	-
SLITRK6	0	genome.wustl.edu	37	13	86369296	86369296	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	13	86369296	86369296	T	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.1348	p.I450L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	101	0	0.00	59	16	21.33	-	-	-
SLITRK6	0	genome.wustl.edu	37	13	86369296	86369296	+	Missense_Mutation	SNP	T	T	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	13	86369296	86369296	T	A	SNP	SLITRK6	ENST00000400286	human	ensembl	69_37n	-1	known	missense	c.1348	p.I450L	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C	-	no_errors	SLITRK6	HGNC	ENSG00000184564	93	0	0.00	59	16	21.33	-	-	-
SMARCC1	0	genome.wustl.edu	37	3	47702933	47702933	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	3	47702933	47702933	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2171	p.R724Q	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	30	0	0.00	22	4	15.38	-	-	-
SMARCC1	0	genome.wustl.edu	37	3	47702933	47702933	+	Missense_Mutation	SNP	C	C	T			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	3	47702933	47702933	C	T	SNP	SMARCC1	ENST00000254480	human	ensembl	69_37n	-1	known	missense	c.2171	p.R724Q	1.000	NULL	pfam_SWIRM,pfam_SANT/Myb,superfamily_Homeodomain-like,superfamily_BRCT_dom,smart_Chromo_domain/shadow,smart_SANT/Myb,pfscan_SWIRM,pfscan_Myb-like_dom	-	no_errors	SMARCC1	HGNC	ENSG00000173473	41	0	0.00	22	4	15.38	-	-	-
TBX3	0	genome.wustl.edu	37	12	115114233	115114236	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	TCTT	TCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	12	115114233	115114236	TCTT	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.984_981	p.E327fs	0.924:0.999:1.000:1.000	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	73	0	0.00	45	6	11.76	-	-	-
TBX3	0	genome.wustl.edu	37	12	115114233	115114236	+	Frame_Shift_Del	DEL	TCTT	TCTT	-			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	TCTT	TCTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	12	115114233	115114236	TCTT	-	DEL	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_del	c.984_981	p.E327fs	0.924:0.999:1.000:1.000	pfam_TBX	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	60	0	0.00	45	6	11.76	-	-	-
TMEM179	0	genome.wustl.edu	37	14	105059982	105059982	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	a9f8fff2-6c84-4731-a120-0f4be959c62e	14	105059982	105059982	G	A	SNP	TMEM179	ENST00000556573	human	ensembl	69_37n	-1	known	missense	c.536	p.A179V	1.000	NULL	NULL	-	no_errors	TMEM179	HGNC	ENSG00000258986	128	0	0.00	87	14	13.86	-	-	-
TMEM179	0	genome.wustl.edu	37	14	105059982	105059982	+	Missense_Mutation	SNP	G	G	A			TCGA-A7-A5ZX-01A-12D-A29N-09	TCGA-A7-A5ZX-11A-51D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1e19a22f-97e3-4a9a-aa55-fb18dd6b674b	438bd1bb-c0b2-4760-a9ac-5ffd547cf382	14	105059982	105059982	G	A	SNP	TMEM179	ENST00000556573	human	ensembl	69_37n	-1	known	missense	c.536	p.A179V	1.000	NULL	NULL	-	no_errors	TMEM179	HGNC	ENSG00000258986	95	0	0.00	87	14	13.86	-	-	-
