Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABHD16A	0	genome.wustl.edu	37	6	31655488	31655488	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	31655488	31655488	C	T	SNP	ABHD16A	ENST00000395952	human	ensembl	69_37n	-1	known	missense	c.1477	p.E493K	1.000	NULL	pfam_AB_hydrolase_1	-	no_errors	ABHD16A	HGNC	ENSG00000204427	147	0	0.00	104	28	21.21	-	-	-
ACAD11	0	genome.wustl.edu	37	3	132378462	132378462	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	132378462	132378462	G	T	SNP	ACAD11	ENST00000264990	human	ensembl	69_37n	-1	known	missense	c.134	p.T45N	0.001	superfamily_Kinase-like_dom	pfam_Aminoglycoside_PTrfase,pfam_Acyl-CoA_Oxase/DH_1,pfam_Acyl-CoA_Oxase/DH_cen-dom,pfam_Acyl-CoA_DH_2_C,pfam_Acyl-CoA_DH_N,superfamily_AcylCoA_DH/oxidase,superfamily_AcylCo_DH/oxidase_C,superfamily_Kinase-like_dom	-	no_errors	ACAD11	HGNC	ENSG00000240303	38	0	0.00	17	5	22.73	-	-	-
ANKRD13C	0	genome.wustl.edu	37	1	70758132	70758132	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	70758132	70758132	C	T	SNP	ANKRD13C	ENST00000370944	human	ensembl	69_37n	-1	known	missense	c.1154	p.R385Q	1.000	pfam_ANKRD13	pfam_ANKRD13,pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	ANKRD13C	HGNC	ENSG00000118454	143	0	0.00	176	46	20.72	-	-	-
AQP10	0	genome.wustl.edu	37	1	154293636	154293636	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	154293636	154293636	T	C	SNP	AQP10	ENST00000324978	human	ensembl	69_37n	+1	known	missense	c.5	p.V2A	0.000	NULL	pfam_MIP,superfamily_Aquaporin-like,prints_MIP,prints_Aquaporin_3,tigrfam_Aquaporin	-	no_errors	AQP10	HGNC	ENSG00000143595	36	0	0.00	51	66	56.41	-	-	-
ATM	0	genome.wustl.edu	37	11	108129723	108129723	+	Missense_Mutation	SNP	A	A	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	108129723	108129723	A	C	SNP	ATM	ENST00000278616	human	ensembl	69_37n	+1	known	missense	c.2387	p.N796T	0.351	superfamily_ARM-type_fold	pfam_PIK-rel_kinase_FAT,pfam_PI3/4_kinase_cat_dom,pfam_TAN,pfam_FATC,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_PI3/4_kinase_cat_dom,pfscan_PIK_FAT,pfscan_FATC,pfscan_PI3/4_kinase_cat_dom	-	no_errors	ATM	HGNC	ENSG00000149311	49	0	0.00	38	15	28.30	-	-	-
ATXN1	0	genome.wustl.edu	37	6	16328465	16328465	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	6	16328465	16328465	G	C	SNP	ATXN1	ENST00000244769	human	ensembl	69_37n	-1	known	missense	c.77	p.S26C	0.892	NULL	pfam_Ataxin-1_HBP1,pfam_Capicua_tscrpt_rep_mod,superfamily_Ataxin-1_HBP1,smart_Ataxin_AXH_dom,pfscan_Ataxin-1_HBP1	-	no_errors	ATXN1	HGNC	ENSG00000124788	26	0	0.00	46	10	17.86	-	-	-
ATXN2L	0	genome.wustl.edu	37	16	28842080	28842080	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	28842080	28842080	C	T	SNP	ATXN2L	ENST00000565971	human	ensembl	69_37n	+1	known	missense	c.620	p.A207V	1.000	NULL	NULL	-	no_start_codon	ATXN2L	HGNC	ENSG00000168488	37	0	0.00	21	13	38.24	-	-	-
C1orf85	0	genome.wustl.edu	37	1	156263157	156263157	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	156263157	156263157	C	T	SNP	C1orf85	ENST00000362007	human	ensembl	69_37n	-1	known	missense	c.1009	p.G337R	0.999	NULL	NULL	-	no_errors	C1orf85	HGNC	ENSG00000198715	51	0	0.00	59	12	16.67	-	-	-
C3orf62	0	genome.wustl.edu	37	3	49311552	49311552	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	49311552	49311552	C	T	SNP	C3orf62	ENST00000424960	human	ensembl	69_37n	-1	known	missense	c.289	p.E97K	1.000	NULL	NULL	-	no_start_codon	C3orf62	HGNC	ENSG00000188315	56	0	0.00	43	9	17.31	-	-	-
CASC5	0	genome.wustl.edu	37	15	40921499	40921499	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	40921499	40921499	G	C	SNP	CASC5	ENST00000346991	human	ensembl	69_37n	+1	known	missense	c.5690	p.R1897T	0.524	NULL	NULL	-	no_errors	CASC5	HGNC	ENSG00000137812	107	0	0.00	85	35	29.17	-	-	-
CASR	0	genome.wustl.edu	37	3	121980842	121980842	+	Silent	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	121980842	121980842	C	T	SNP	CASR	ENST00000498619	human	ensembl	69_37n	+1	known	silent	c.960	p.F320	0.980	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,superfamily_Growth_fac_rcpt,pfscan_GPCR_3_C,prints_GPCR_3	-	no_errors	CASR	HGNC	ENSG00000036828	189	0	0.00	105	31	22.79	-	-	-
CHD4	0	genome.wustl.edu	37	12	6702335	6702335	+	Silent	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	6702335	6702335	G	A	SNP	CHD4	ENST00000309577	human	ensembl	69_37n	-1	known	silent	c.2574	p.D858	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_DUF1086,pfam_SNF2_N,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,superfamily_Homeodomain-like,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD4	HGNC	ENSG00000111642	246	0	0.00	210	79	27.24	-	-	-
CYP11B2	0	genome.wustl.edu	37	8	143994076	143994076	+	Missense_Mutation	SNP	T	T	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	143994076	143994076	T	A	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1268	p.Y423F	0.852	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	49	0	0.00	97	13	11.82	-	-	-
DLGAP4	0	genome.wustl.edu	37	20	35060254	35060254	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	35060254	35060254	G	A	SNP	DLGAP4	ENST00000339266	human	ensembl	69_37n	+1	known	missense	c.134	p.R45H	1.000	NULL	pfam_GKAP	-	no_errors	DLGAP4	HGNC	ENSG00000080845	36	0	0.00	29	14	31.82	-	-	-
DNAH11	0	genome.wustl.edu	37	7	21805205	21805205	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	7	21805205	21805205	G	A	SNP	DNAH11	ENST00000328843	human	ensembl	69_37n	+1	known	missense	c.9121	p.E3041K	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH11	HGNC	ENSG00000105877	48	0	0.00	31	24	43.64	-	-	-
FGFR4	0	genome.wustl.edu	37	5	176522628	176522628	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	5	176522628	176522628	C	T	SNP	FGFR4	ENST00000511076	human	ensembl	69_37n	+1	novel	missense	c.619	p.R207W	0.011	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	FGFR4	HGNC	ENSG00000160867	28	0	0.00	18	5	21.74	-	-	-
HSPBAP1	0	genome.wustl.edu	37	3	122459670	122459670	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	122459670	122459670	G	A	SNP	HSPBAP1	ENST00000306103	human	ensembl	69_37n	-1	known	missense	c.989	p.S330F	0.807	pfam_JmjC_dom,prints_HSPB1-associated_protein_1	pfam_JmjC_dom,smart_JmjC_dom,pfscan_JmjC_dom,prints_HSPB1-associated_protein_1	-	no_errors	HSPBAP1	HGNC	ENSG00000169087	255	0	0.00	195	67	25.48	-	-	-
LAMA1	0	genome.wustl.edu	37	18	7015822	7015822	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	18	7015822	7015822	G	A	SNP	LAMA1	ENST00000389658	human	ensembl	69_37n	-1	known	missense	c.3025	p.P1009S	0.751	pfam_EGF_laminin,smart_EGF-like,smart_EGF_laminin,pfscan_EGF_laminin	pfam_Laminin_G,pfam_EGF_laminin,pfam_Laminin_B_type_IV,pfam_Laminin_N,pfam_Laminin_I,pfam_Laminin_II,superfamily_ConA-like_lec_gl,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,smart_Laminin_G,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_G,pfscan_Laminin_N	-	no_errors	LAMA1	HGNC	ENSG00000101680	97	0	0.00	106	24	18.32	-	-	-
LRP6	0	genome.wustl.edu	37	12	12311946	12311946	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	12311946	12311946	G	T	SNP	LRP6	ENST00000261349	human	ensembl	69_37n	-1	known	missense	c.2608	p.Q870K	1.000	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pirsf_Low_density_Lipo_rcpt-rel_p5/6,pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,superfamily_LDrepeatLR_classA_rpt,smart_LDLR_classB_rpt,smart_EGF-like,smart_LDrepeatLR_classA_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP6	HGNC	ENSG00000070018	139	0	0.00	147	35	19.23	-	-	-
MARCH7	0	genome.wustl.edu	37	2	160605150	160605150	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	160605150	160605150	C	T	SNP	MARCH7	ENST00000259050	human	ensembl	69_37n	+1	known	missense	c.1349	p.A450V	1.000	NULL	pfam_Znf_C3HC4_RING-type,smart_Znf_RING-CH	-	no_errors	MARCH7	HGNC	ENSG00000136536	184	1	0.54	105	41	28.08	-	-	-
MLYCD	0	genome.wustl.edu	37	16	83948559	83948560	+	Splice_Site	DEL	AG	AG	-			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AG	AG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	16	83948559	83948560	AG	-	DEL	MLYCD	ENST00000262430	human	ensembl	69_37n	+1	known	splice_site_del	c.949-2_949-1	e5-1	1.000:1.000	-	-	-	no_errors	MLYCD	HGNC	ENSG00000103150	93	0	0.00	78	38	31.93	-	-	-
MTMR11	0	genome.wustl.edu	37	1	149908094	149908094	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	1	149908094	149908094	G	A	SNP	MTMR11	ENST00000439741	human	ensembl	69_37n	-1	known	missense	c.95	p.P32L	0.988	NULL	pfam_Myotubularin_assoc,pfam_Myotub-related	-	no_errors	MTMR11	HGNC	ENSG00000014914	204	0	0.00	279	109	28.09	-	-	-
MUC16	0	genome.wustl.edu	37	19	9063731	9063731	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	9063731	9063731	C	T	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.23715	p.M7905I	0.000	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	163	1	0.61	161	83	34.02	-	-	-
MUC16	0	genome.wustl.edu	37	19	9065839	9065839	+	Missense_Mutation	SNP	A	A	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	9065839	9065839	A	C	SNP	MUC16	ENST00000397910	human	ensembl	69_37n	-1	known	missense	c.21607	p.S7203A	0.007	NULL	pfam_SEA,smart_SEA,pfscan_SEA	-	no_errors	MUC16	HGNC	ENSG00000181143	293	0	0.00	268	139	33.90	-	-	-
MUC5B	0	genome.wustl.edu	37	11	1264973	1264973	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	1264973	1264973	C	T	SNP	MUC5B	ENST00000447027	human	ensembl	69_37n	+1	known	missense	c.6872	p.P2291L	0.000	NULL	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,pfam_VWF_C,superfamily_TIL_dom,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_VWC_out,smart_VWF_C,smart_Cys_knot_C,pfscan_Cys_knot_C,pfscan_VWF_C	-	no_errors	MUC5B	HGNC	ENSG00000117983	34	0	0.00	31	17	35.42	-	-	-
NBEA	0	genome.wustl.edu	37	13	35733461	35733463	+	In_Frame_Del	DEL	AGT	AGT	-			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	AGT	AGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	13	35733461	35733463	AGT	-	DEL	NBEA	ENST00000310336	human	ensembl	69_37n	+1	known	in_frame_del	c.3153_3155	p.V1052in_frame_del	1.000:1.000:1.000	NULL	pfam_BEACH_dom,pfam_DUF1088,pfam_WD40_repeat,superfamily_BEACH_dom,superfamily_ConA-like_lec_gl,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_BEACH_dom,pfscan_WD40_repeat_dom	-	no_errors	NBEA	HGNC	ENSG00000172915	191	0	0.00	85	24	22.02	-	-	-
NUDT6	0	genome.wustl.edu	37	4	123814333	123814333	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	4	123814333	123814333	C	T	SNP	NUDT6	ENST00000304430	human	ensembl	69_37n	-1	known	missense	c.601	p.E201K	1.000	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	pfam_NUDIX_hydrolase_dom,superfamily_NUDIX_hydrolase_dom-like,prints_Nudix_hydrolase6-like	-	no_errors	NUDT6	HGNC	ENSG00000170917	166	1	0.60	103	20	16.13	-	-	-
PARP6	0	genome.wustl.edu	37	15	72559136	72559136	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	15	72559136	72559136	C	T	SNP	PARP6	ENST00000287196	human	ensembl	69_37n	-1	known	missense	c.31	p.D11N	1.000	NULL	pfam_Poly(ADP-ribose)pol_cat_dom,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	PARP6	HGNC	ENSG00000137817	132	0	0.00	128	35	21.47	-	-	-
PCMTD2	0	genome.wustl.edu	37	20	62891426	62891426	+	Silent	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	62891426	62891426	C	T	SNP	PCMTD2	ENST00000308824	human	ensembl	69_37n	+1	known	silent	c.108	p.I36	0.609	pfam_PCMT	pfam_PCMT	-	no_errors	PCMTD2	HGNC	ENSG00000203880	101	0	0.00	150	30	16.57	-	-	-
PCSK5	0	genome.wustl.edu	37	9	78772039	78772039	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	9	78772039	78772039	G	A	SNP	PCSK5	ENST00000545128	human	ensembl	69_37n	+1	known	missense	c.1391	p.R464Q	1.000	superfamily_Galactose-bd-like	pfam_Peptidase_S8/S53,pfam_PrprotnconvertsP,superfamily_Peptidase_S8/S53,superfamily_Galactose-bd-like,superfamily_Growth_fac_rcpt,superfamily_Prot_inh_propept,smart_Furin_repeat,smart_EGF-like,prints_Peptidase_S8_subtilisin-rel	-	no_errors	PCSK5	HGNC	ENSG00000099139	83	0	0.00	75	31	29.25	-	-	-
PPM1L	0	genome.wustl.edu	37	3	160474474	160474474	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	160474474	160474474	C	G	SNP	PPM1L	ENST00000498165	human	ensembl	69_37n	+1	known	missense	c.378	p.I126M	1.000	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	pfam_PP2C-like,superfamily_PP2C-like,smart_PP2C-like	-	no_errors	PPM1L	HGNC	ENSG00000163590	44	0	0.00	20	4	16.67	-	-	-
PREX2	0	genome.wustl.edu	37	8	68965476	68965476	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	68965476	68965476	G	A	SNP	PREX2	ENST00000288368	human	ensembl	69_37n	+1	known	missense	c.1088	p.R363Q	1.000	smart_Pleckstrin_homology	pfam_DH-domain,pfam_DEP_dom,pfam_PDZ,superfamily_DH-domain,superfamily_PDZ,smart_DH-domain,smart_Pleckstrin_homology,smart_DEP_dom,smart_PDZ,pfscan_DEP_dom,pfscan_PDZ,pfscan_Pleckstrin_homology,pfscan_DH-domain	-	no_errors	PREX2	HGNC	ENSG00000046889	334	0	0.00	458	67	12.76	-	-	-
SALL4	0	genome.wustl.edu	37	20	50400810	50400810	+	Silent	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	20	50400810	50400810	G	A	SNP	SALL4	ENST00000217086	human	ensembl	69_37n	-1	known	silent	c.3156	p.V1052	1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SALL4	HGNC	ENSG00000101115	52	0	0.00	87	24	21.62	-	-	-
SCN3B	0	genome.wustl.edu	37	11	123513189	123513189	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	11	123513189	123513189	G	A	SNP	SCN3B	ENST00000299333	human	ensembl	69_37n	-1	known	missense	c.410	p.T137M	1.000	pfam_Ig_V-set,smart_Ig_sub	pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,pfscan_Ig-like	-	no_errors	SCN3B	HGNC	ENSG00000166257	88	0	0.00	53	26	32.91	-	-	-
SH2D4A	0	genome.wustl.edu	37	8	19231145	19231145	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	8	19231145	19231145	C	T	SNP	SH2D4A	ENST00000265807	human	ensembl	69_37n	+1	known	missense	c.1022	p.S341L	0.591	NULL	pfam_SH2,smart_SH2,pfscan_SH2	-	no_errors	SH2D4A	HGNC	ENSG00000104611	115	0	0.00	74	37	33.33	-	-	-
SP1	0	genome.wustl.edu	37	12	53776064	53776064	+	Silent	SNP	T	T	C			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	53776064	53776064	T	C	SNP	SP1	ENST00000327443	human	ensembl	69_37n	+1	known	silent	c.333	p.S111	0.909	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	SP1	HGNC	ENSG00000185591	44	0	0.00	37	21	36.21	-	-	-
SPHK2	0	genome.wustl.edu	37	19	49131440	49131440	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	19	49131440	49131440	C	T	SNP	SPHK2	ENST00000443164	human	ensembl	69_37n	+1	known	missense	c.964	p.R322C	0.977	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom,smart_Diacylglycerol_kinase_cat_dom	-	no_errors	SPHK2	HGNC	ENSG00000063176	14	0	0.00	10	10	47.62	-	-	-
TCHP	0	genome.wustl.edu	37	12	110346447	110346447	+	Silent	SNP	G	G	A			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	12	110346447	110346447	G	A	SNP	TCHP	ENST00000312777	human	ensembl	69_37n	+1	known	silent	c.756	p.E252	0.320	NULL	NULL	-	no_errors	TCHP	HGNC	ENSG00000139437	23	0	0.00	25	9	26.47	-	-	-
TMEM131	0	genome.wustl.edu	37	2	98475800	98475802	+	In_Frame_Del	DEL	TGT	TGT	-			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	TGT	TGT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	2	98475800	98475802	TGT	-	DEL	TMEM131	ENST00000186436	human	ensembl	69_37n	-1	known	in_frame_del	c.450_448	p.T150in_frame_del	1.000:1.000:1.000	NULL	pfam_DUF3651_TMEM131	-	no_errors	TMEM131	HGNC	ENSG00000075568	128	0	0.00	138	39	21.91	-	-	-
TP53	0	genome.wustl.edu	37	17	7579311	7579311	+	Splice_Site	SNP	C	C	T			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	17	7579311	7579311	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	splice_site	c.375+1	e3+1	1.000	-	-	-	no_errors	TP53	HGNC	ENSG00000141510	150	0	0.00	131	76	36.71	-	-	-
UQCRC1	0	genome.wustl.edu	37	3	48641015	48641015	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A07O-01A-11W-A019-09	TCGA-A8-A07O-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4574b64d-8848-46e4-913e-5d318c1f6162	edde47bb-2b18-4fcf-8c3a-10ea98983e62	3	48641015	48641015	C	G	SNP	UQCRC1	ENST00000203407	human	ensembl	69_37n	-1	known	missense	c.688	p.V230L	1.000	pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	pfam_Pept_M16_N,pfam_Peptidase_M16_C,superfamily_Metalloenz_metal-bd	-	no_errors	UQCRC1	HGNC	ENSG00000010256	24	0	0.00	12	5	27.78	-	-	-
