Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ACAP2	0	genome.wustl.edu	37	3	195102673	195102673	+	Nonsense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	195102673	195102673	G	A	SNP	ACAP2	ENST00000326793	human	ensembl	69_37n	-1	known	nonsense	c.190	p.R64*	1.000	NULL	pfam_ArfGAP,pfam_Pleckstrin_homology,pfam_Ankyrin_rpt,superfamily_ArfGAP,superfamily_Ankyrin_rpt-contain_dom,smart_Pleckstrin_homology,smart_ArfGAP,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_Pleckstrin_homology,pfscan_ArfGAP,prints_ArfGAP	-	no_errors	ACAP2	HGNC	ENSG00000114331	123	0	0.00	176	43	19.63	-	-	-
ACO2	0	genome.wustl.edu	37	22	41921257	41921257	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	22	41921257	41921257	G	A	SNP	ACO2	ENST00000216254	human	ensembl	69_37n	+1	known	missense	c.1666	p.V556M	1.000	superfamily_Aconitase/3IPM_dehydase_swvl,tigrfam_Aconitase_mito-like	pfam_Acoase/IPM_deHydtase_lsu_aba,pfam_AconitaseA/IPMdHydase_ssu_swvl,superfamily_Acoase/IPM_deHydtase_lsu_aba,superfamily_Aconitase/3IPM_dehydase_swvl,prints_Acoase/IPM_deHydtase_lsu_aba,tigrfam_Aconitase_mito-like	-	no_errors	ACO2	HGNC	ENSG00000100412	40	0	0.00	27	7	20.59	-	-	-
ACPP	0	genome.wustl.edu	37	3	132068766	132068766	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	132068766	132068766	G	T	SNP	ACPP	ENST00000351273	human	ensembl	69_37n	+1	known	missense	c.784	p.V262F	1.000	pfam_His_Pase_superF_clade-2	pfam_His_Pase_superF_clade-2	-	no_errors	ACPP	HGNC	ENSG00000014257	85	0	0.00	118	20	14.49	-	-	-
ACSL6	0	genome.wustl.edu	37	5	131325171	131325171	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	131325171	131325171	C	T	SNP	ACSL6	ENST00000296869	human	ensembl	69_37n	-1	known	missense	c.481	p.G161R	1.000	pfam_AMP-dep_Synth/Lig	pfam_AMP-dep_Synth/Lig	-	no_errors	ACSL6	HGNC	ENSG00000164398	138	0	0.00	127	19	13.01	-	-	-
BAZ2A	0	genome.wustl.edu	37	12	56998028	56998028	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	56998028	56998028	T	-	DEL	BAZ2A	ENST00000551812	human	ensembl	69_37n	-1	known	frame_shift_del	c.3017	p.K1006fs	1.000	NULL	pfam_Bromodomain,pfam_Methyl_CpG_DNA-bd,pfam_DDT_dom,pfam_Znf_PHD-finger,superfamily_Bromodomain,superfamily_DNA-bd_integrase-typ,superfamily_Znf_FYVE_PHD,smart_Methyl_CpG_DNA-bd,smart_AT_hook_DNA-bd_motif,smart_DDT_dom_subgr,smart_Znf_PHD,smart_Bromodomain,pfscan_Methyl_CpG_DNA-bd,pfscan_Znf_PHD-finger,pfscan_DDT_dom_superfamily,pfscan_Bromodomain,prints_Bromodomain	-	no_errors	BAZ2A	HGNC	ENSG00000076108	20	0	0.00	30	4	11.43	-	-	-
BRIX1	0	genome.wustl.edu	37	5	34924961	34924961	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	34924961	34924961	G	A	SNP	BRIX1	ENST00000336767	human	ensembl	69_37n	+1	known	missense	c.673	p.E225K	1.000	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	pfam_Brix,superfamily_Anticodon-bd,smart_Brix,pfscan_Brix	-	no_errors	BRIX1	HGNC	ENSG00000113460	68	0	0.00	43	8	15.69	-	-	-
BTBD1	0	genome.wustl.edu	37	15	83710634	83710634	+	Silent	SNP	T	T	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	83710634	83710634	T	G	SNP	BTBD1	ENST00000261721	human	ensembl	69_37n	-1	known	silent	c.708	p.R236	1.000	pfam_BACK,smart_BACK	pfam_PHR,pfam_BTB_POZ,pfam_BACK,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,pfscan_BTB/POZ-like	-	no_errors	BTBD1	HGNC	ENSG00000064726	130	0	0.00	139	34	19.65	-	-	-
BTRC	0	genome.wustl.edu	37	10	103295203	103295203	+	Silent	SNP	G	G	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	10	103295203	103295203	G	C	SNP	BTRC	ENST00000370187	human	ensembl	69_37n	+1	known	silent	c.1440	p.V480	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	pfam_WD40_repeat,pfam_Beta-TrCP_D,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	BTRC	HGNC	ENSG00000166167	78	0	0.00	68	12	15.00	-	-	-
C12orf50	0	genome.wustl.edu	37	12	88380150	88380150	+	Silent	SNP	C	C	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	88380150	88380150	C	T	SNP	C12orf50	ENST00000298699	human	ensembl	69_37n	-1	known	silent	c.861	p.V287	1.000	NULL	NULL	-	no_errors	C12orf50	HGNC	ENSG00000165805	195	0	0.00	104	49	32.03	-	-	-
C20orf132	0	genome.wustl.edu	37	20	35748218	35748218	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	20	35748218	35748218	C	G	SNP	C20orf132	ENST00000400441	human	ensembl	69_37n	-1	known	missense	c.2253	p.K751N	0.943	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	no_errors	C20orf132	HGNC	ENSG00000101353	208	0	0.00	173	36	17.22	-	-	-
C5orf42	0	genome.wustl.edu	37	5	37179528	37179528	+	Missense_Mutation	SNP	C	C	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	37179528	37179528	C	A	SNP	C5orf42	ENST00000425232	human	ensembl	69_37n	-1	known	missense	c.5755	p.V1919F	0.000	NULL	superfamily_Quino_amine_DH_bsu	-	no_errors	C5orf42	HGNC	ENSG00000197603	133	0	0.00	117	28	19.31	-	-	-
CEP95	0	genome.wustl.edu	37	17	62517574	62517574	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	17	62517574	62517574	C	G	SNP	CEP95	ENST00000556440	human	ensembl	69_37n	+1	known	missense	c.644	p.S215C	0.000	NULL	superfamily_CH-domain	-	no_errors	CEP95	HGNC	ENSG00000258890	47	0	0.00	92	11	10.68	-	-	-
DOPEY2	0	genome.wustl.edu	37	21	37605126	37605126	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	21	37605126	37605126	C	G	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	+1	known	missense	c.2375	p.S792C	0.000	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	53	0	0.00	182	24	11.65	-	-	-
DOPEY2	0	genome.wustl.edu	37	21	37605200	37605200	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	21	37605200	37605200	C	G	SNP	DOPEY2	ENST00000399151	human	ensembl	69_37n	+1	known	missense	c.2449	p.L817V	0.763	NULL	pfam_Dopey_N	-	no_errors	DOPEY2	HGNC	ENSG00000142197	66	0	0.00	193	29	13.06	-	-	-
ESYT1	0	genome.wustl.edu	37	12	56527640	56527640	+	Missense_Mutation	SNP	C	C	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	56527640	56527640	C	T	SNP	ESYT1	ENST00000267113	human	ensembl	69_37n	+1	known	missense	c.1456	p.R486W	0.451	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,prints_C2_dom,pfscan_C2_membr_targeting	-	no_errors	ESYT1	HGNC	ENSG00000139641	108	0	0.00	127	16	11.19	-	-	-
EXTL1	0	genome.wustl.edu	37	1	26361666	26361667	+	Frame_Shift_Ins	INS	-	-	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	1	26361666	26361667	-	C	INS	EXTL1	ENST00000374280	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1859_1860	p.P623fs	0.000:0.000	pfam_HexNAc_Trfase_a	pfam_HexNAc_Trfase_a,pfam_Exostosin	-	no_errors	EXTL1	HGNC	ENSG00000158008	19	0	0.00	4	2	33.33	-	-	-
FAM187B	0	genome.wustl.edu	37	19	35715792	35715792	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	19	35715792	35715792	G	A	SNP	FAM187B	ENST00000324675	human	ensembl	69_37n	-1	known	missense	c.1046	p.A349V	0.000	NULL	NULL	-	no_errors	FAM187B	HGNC	ENSG00000177558	22	0	0.00	9	9	50.00	-	-	-
FAM91A1	0	genome.wustl.edu	37	8	124798772	124798772	+	Missense_Mutation	SNP	G	G	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	124798772	124798772	G	T	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	+1	known	missense	c.1000	p.D334Y	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	242	0	0.00	538	61	10.17	-	-	-
FREM1	0	genome.wustl.edu	37	9	14859403	14859403	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	9	14859403	14859403	T	C	SNP	FREM1	ENST00000380881	human	ensembl	69_37n	-1	known	missense	c.409	p.M137V	0.908	NULL	pfam_C-type_lectin,pfam_Calx_beta,superfamily_C-type_lectin_fold,superfamily_Cadherin-like,smart_C-type_lectin,pfscan_C-type_lectin	-	no_errors	FREM1	HGNC	ENSG00000164946	495	0	0.00	358	47	11.60	-	-	-
GFRA3	0	genome.wustl.edu	37	5	137599965	137599965	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	5	137599965	137599965	G	A	SNP	GFRA3	ENST00000274721	human	ensembl	69_37n	-1	known	missense	c.364	p.R122C	0.843	pfam_GDNF/GAS1,smart_GDNF/GAS1	pfam_GDNF/GAS1,smart_GDNF/GAS1,prints_GDNF_rcpt,prints_GDNF_rcpt_A3	-	no_errors	GFRA3	HGNC	ENSG00000146013	71	0	0.00	119	16	11.85	-	-	-
HOXA1	0	genome.wustl.edu	37	7	27134950	27134950	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	7	27134950	27134950	G	A	SNP	HOXA1	ENST00000355633	human	ensembl	69_37n	-1	known	missense	c.379	p.R127C	0.950	NULL	NULL	-	no_errors	HOXA1	HGNC	ENSG00000105991	54	0	0.00	42	18	30.00	-	-	-
ITPR3	0	genome.wustl.edu	37	6	33639885	33639885	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	6	33639885	33639885	C	G	SNP	ITPR3	ENST00000374316	human	ensembl	69_37n	+1	known	missense	c.2808	p.F936L	0.920	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ARM-type_fold,smart_MIR_motif,pfscan_MIR_motif,prints_InsP3_rcpt-bd	-	no_errors	ITPR3	HGNC	ENSG00000096433	15	0	0.00	12	10	45.45	-	-	-
MGAT4A	0	genome.wustl.edu	37	2	99272904	99272904	+	Silent	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	2	99272904	99272904	G	A	SNP	MGAT4A	ENST00000264968	human	ensembl	69_37n	-1	known	silent	c.609	p.G203	0.449	pfam_Glyco_transf_54	pfam_Glyco_transf_54	-	no_errors	MGAT4A	HGNC	ENSG00000071073	221	0	0.00	229	27	10.55	-	-	-
MLL3	0	genome.wustl.edu	37	7	151891576	151891576	+	Nonsense_Mutation	SNP	C	C	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	7	151891576	151891576	C	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.4456	p.E1486*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	156	0	0.00	170	22	11.46	-	-	-
NXF1	0	genome.wustl.edu	37	11	62562413	62562413	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	11	62562413	62562413	T	C	SNP	NXF1	ENST00000294172	human	ensembl	69_37n	-1	known	missense	c.1571	p.N524S	1.000	pfam_NTF2,pfscan_Nuclear_transport_factor_2_euk	pfam_Tap_RNA-bd,pfam_NTF2,pfam_TAP_C_dom,pfam_Leu-rich_rpt,superfamily_UBA-like,smart_TAP_C_dom,pfscan_Nuclear_transport_factor_2_euk	-	no_errors	NXF1	HGNC	ENSG00000162231	73	0	0.00	47	13	21.67	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	128	0	0.00	66	60	47.62	-	-	-
PPP2R3C	0	genome.wustl.edu	37	14	35577392	35577392	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	14	35577392	35577392	T	C	SNP	PPP2R3C	ENST00000261475	human	ensembl	69_37n	-1	known	missense	c.455	p.Y152C	1.000	NULL	NULL	-	no_errors	PPP2R3C	HGNC	ENSG00000092020	76	0	0.00	46	47	50.54	-	-	-
RAB4B	0	genome.wustl.edu	37	19	41286351	41286351	+	Silent	SNP	T	T	A			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	19	41286351	41286351	T	A	SNP	RAB4B	ENST00000357052	human	ensembl	69_37n	+1	known	silent	c.159	p.G53	0.997	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_ProtSyn_GTP-bd,pfam_Gtr1_RagA,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB4B	HGNC	ENSG00000167578	16	0	0.00	11	7	38.89	-	-	-
RRAGD	0	genome.wustl.edu	37	6	90088968	90088968	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	6	90088968	90088968	T	C	SNP	RRAGD	ENST00000369415	human	ensembl	69_37n	-1	known	missense	c.734	p.E245G	1.000	pfam_Gtr1_RagA	pfam_Gtr1_RagA,pfam_Small_GTPase_ARF/SAR,pfam_SRP_receptor_beta_su	-	no_errors	RRAGD	HGNC	ENSG00000025039	94	0	0.00	65	32	32.65	-	-	-
SCARA3	0	genome.wustl.edu	37	8	27528481	27528481	+	Silent	SNP	C	C	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	27528481	27528481	C	T	SNP	SCARA3	ENST00000301904	human	ensembl	69_37n	+1	known	silent	c.1434	p.G478	0.002	pfam_Collagen	pfam_Collagen	-	no_errors	SCARA3	HGNC	ENSG00000168077	36	0	0.00	36	8	18.18	-	-	-
SCN10A	0	genome.wustl.edu	37	3	38760181	38760181	+	Missense_Mutation	SNP	G	G	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	3	38760181	38760181	G	C	SNP	SCN10A	ENST00000449082	human	ensembl	69_37n	-1	known	missense	c.3644	p.T1215S	1.000	pfam_Ion_trans_dom	pfam_Ion_trans_dom,pfam_Na_trans_assoc,pfam_PKD1_2_channel,prints_Na_channel_asu,prints_PKD_2	-	no_errors	SCN10A	HGNC	ENSG00000185313	147	0	0.00	130	86	39.63	-	-	-
SLCO1B3	0	genome.wustl.edu	37	12	21030801	21030801	+	Missense_Mutation	SNP	T	T	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	12	21030801	21030801	T	G	SNP	SLCO1B3	ENST00000553473	human	ensembl	69_37n	+1	known	missense	c.1066	p.F356V	0.032	pfam_OA_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	pfam_OA_transporter,pfam_MFS,pfam_Kazal-type_dom,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom,tigrfam_OA_transporter	-	no_errors	SLCO1B3	HGNC	ENSG00000111700	158	0	0.00	156	37	19.07	-	-	-
SPRR2D	0	genome.wustl.edu	37	1	153012797	153012797	+	Missense_Mutation	SNP	T	T	C			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	1	153012797	153012797	T	C	SNP	SPRR2D	ENST00000360379	human	ensembl	69_37n	-1	known	missense	c.26	p.K9R	1.000	NULL	NULL	-	no_errors	SPRR2D	HGNC	ENSG00000163216	155	0	0.00	229	38	14.18	-	-	-
TRAK2	0	genome.wustl.edu	37	2	202272210	202272210	+	Missense_Mutation	SNP	C	C	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	2	202272210	202272210	C	G	SNP	TRAK2	ENST00000332624	human	ensembl	69_37n	-1	known	missense	c.202	p.D68H	1.000	pfam_HAP1_N	pfam_HAP1_N,pfam_Traffickng_kinesin-bd_prot_dom	-	no_errors	TRAK2	HGNC	ENSG00000115993	146	0	0.00	128	18	12.33	-	-	-
WDR67	0	genome.wustl.edu	37	8	124096492	124096494	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	8	124096492	124096494	CTT	-	DEL	WDR67	ENST00000287380	human	ensembl	69_37n	+1	known	in_frame_del	c.431_433	p.S146in_frame_del	1.000:0.990:1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	pfam_Rab-GTPase-TBC_dom,pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_Rab-GTPase-TBC_dom,smart_WD40_repeat,pfscan_Rab-GTPase-TBC_dom,pfscan_WD40_repeat_dom	-	no_errors	WDR67	HGNC	ENSG00000156787	331	0	0.00	937	207	18.09	-	-	-
ZNF710	0	genome.wustl.edu	37	15	90611696	90611696	+	Frame_Shift_Del	DEL	T	T	-			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	90611696	90611696	T	-	DEL	ZNF710	ENST00000268154	human	ensembl	69_37n	+1	known	frame_shift_del	c.1327	p.S443fs	1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	76	0	0.00	71	41	36.28	-	-	-
ZNF710	0	genome.wustl.edu	37	15	90611700	90611701	+	Frame_Shift_Ins	INS	-	-	G			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	15	90611700	90611701	-	G	INS	ZNF710	ENST00000268154	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1331_1332	p.F444fs	1.000:1.000	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF710	HGNC	ENSG00000140548	77	0	0.00	75	44	36.97	-	-	-
ZNF831	0	genome.wustl.edu	37	20	57768844	57768844	+	Nonsense_Mutation	SNP	C	C	T			TCGA-A8-A08P-01A-11W-A019-09	TCGA-A8-A08P-10A-01W-A021-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2fbe3da3-ce62-4edf-933b-367f983e221a	fa1ecf1c-6e62-45b6-b4b0-dfc47067a6e0	20	57768844	57768844	C	T	SNP	ZNF831	ENST00000371030	human	ensembl	69_37n	+1	novel	nonsense	c.2770	p.Q924*	0.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF831	HGNC	ENSG00000124203	22	0	0.00	22	7	23.33	-	-	-
