Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
A1CF	0	genome.wustl.edu	37	10	52596055	52596055	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	10	52596055	52596055	C	T	SNP	A1CF	ENST00000282641	human	ensembl	69_37n	-1	known	missense	c.383	p.G128E	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	A1CF	HGNC	ENSG00000148584	93	0	0.00	31	5	13.89	-	-	-
ANKRD1	0	genome.wustl.edu	37	10	92675332	92675332	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	10	92675332	92675332	T	A	SNP	ANKRD1	ENST00000371697	human	ensembl	69_37n	-1	known	missense	c.817	p.M273L	0.999	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,prints_Ankyrin_rpt	-	no_errors	ANKRD1	HGNC	ENSG00000148677	119	0	0.00	52	7	11.86	-	-	-
BCL11A	0	genome.wustl.edu	37	2	60687466	60687466	+	RNA	SNP	G	G	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	2	60687466	60687466	G	T	SNP	BCL11A	ENST00000477659	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.999	-	-	-	no_errors	BCL11A	HGNC	ENSG00000119866	12	0	0.00	11	4	26.67	-	-	-
CBX8	0	genome.wustl.edu	37	17	77768523	77768523	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	17	77768523	77768523	C	G	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.1081	p.V361L	1.000	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	31	0	0.00	11	3	21.43	-	-	-
CD247	0	genome.wustl.edu	37	1	167404660	167404660	+	Silent	SNP	C	C	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	1	167404660	167404660	C	T	SNP	CD247	ENST00000362089	human	ensembl	69_37n	-1	known	silent	c.312	p.K104	0.997	NULL	pfam_Phos_immunorcpt_sig_ITAM,pfam_CR3_zeta/IgE_Fc_rcpt_gamma,smart_Phos_immunorcpt_sig_ITAM,pfscan_Phos_immunorcpt_sig_ITAM	-	no_errors	CD247	HGNC	ENSG00000198821	87	0	0.00	53	9	14.52	-	-	-
CEP112	0	genome.wustl.edu	37	17	64173016	64173016	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	17	64173016	64173016	C	T	SNP	CEP112	ENST00000392769	human	ensembl	69_37n	-1	known	missense	c.229	p.G77S	0.991	NULL	superfamily_t-SNARE	-	no_errors	CEP112	HGNC	ENSG00000154240	93	0	0.00	66	8	10.81	-	-	-
DDR1	0	genome.wustl.edu	37	6	30859824	30859824	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	6	30859824	30859824	G	T	SNP	DDR1	ENST00000446312	human	ensembl	69_37n	+1	known	missense	c.611	p.G204V	0.998	NULL	pfam_Coagulation_fac_5/8-C_type_dom,superfamily_Galactose-bd-like,smart_Coagulation_fac_5/8-C_type_dom,pfscan_Coagulation_fac_5/8-C_type_dom	-	no_errors	DDR1	HGNC	ENSG00000204580	102	0	0.00	32	4	11.11	-	-	-
DUS3L	0	genome.wustl.edu	37	19	5789558	5789558	+	Frame_Shift_Del	DEL	T	T	-			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	19	5789558	5789558	T	-	DEL	DUS3L	ENST00000309061	human	ensembl	69_37n	-1	known	frame_shift_del	c.560	p.E187fs	0.104	NULL	pfam_tRNA_hU_synthase	-	no_errors	DUS3L	HGNC	ENSG00000141994	17	0	0.00	3	2	40.00	-	-	-
GDF5	0	genome.wustl.edu	37	20	34022326	34022326	+	Missense_Mutation	SNP	A	A	G			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	20	34022326	34022326	A	G	SNP	GDF5	ENST00000374369	human	ensembl	69_37n	-1	known	missense	c.887	p.I296T	1.000	pfam_TGF-b_N	pfam_TGF-b_C,pfam_TGF-b_N,smart_TGF-b_C	-	no_errors	GDF5	HGNC	ENSG00000125965	27	0	0.00	9	3	25.00	-	-	-
HNRNPKP3	0	genome.wustl.edu	37	11	43283606	43283606	+	RNA	DEL	A	A	-			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	11	43283606	43283606	A	-	DEL	HNRNPKP3	ENST00000511537	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.986	-	-	-	no_errors	HNRNPKP3	HGNC	ENSG00000251557	11	0	0.00	4	2	33.33	-	-	-
KIF1B	0	genome.wustl.edu	37	1	10363725	10363725	+	Missense_Mutation	SNP	G	G	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	1	10363725	10363725	G	T	SNP	KIF1B	ENST00000377083	human	ensembl	69_37n	+1	known	missense	c.2482	p.D828Y	1.000	NULL	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_FHA_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF1B	HGNC	ENSG00000054523	32	0	0.00	11	3	21.43	-	-	-
MYH9	0	genome.wustl.edu	37	22	36702619	36702620	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	22	36702619	36702620	-	C	INS	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1878_1877	p.M627fs	1.000:1.000	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	46	0	0.00	14	2	12.50	-	-	-
NOTCH3	0	genome.wustl.edu	37	19	15292514	15292514	+	Missense_Mutation	SNP	C	C	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	19	15292514	15292514	C	T	SNP	NOTCH3	ENST00000263388	human	ensembl	69_37n	-1	known	missense	c.2665	p.D889N	1.000	smart_EGF-like_Ca-bd,pirsf_Notch,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_dom,pfam_Notch_NODP_dom,pfam_Notch_NOD_dom,pfam_EGF_extracell,pfam_DUF3454_notch,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,pirsf_Notch,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom,prints_Notch_3,prints_Notch_dom	-	no_errors	NOTCH3	HGNC	ENSG00000074181	27	0	0.00	6	3	33.33	-	-	-
OSBPL10	0	genome.wustl.edu	37	3	31871579	31871579	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	3	31871579	31871579	G	A	SNP	OSBPL10	ENST00000396556	human	ensembl	69_37n	-1	known	nonsense	c.682	p.R228*	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL10	HGNC	ENSG00000144645	47	0	0.00	30	6	16.67	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36259142	36259142	+	Nonsense_Mutation	SNP	T	T	A			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	21	36259142	36259142	T	A	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	nonsense	c.349	p.K117*	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	44	0	0.00	11	5	31.25	-	-	-
TMEM132A	0	genome.wustl.edu	37	11	60703785	60703787	+	In_Frame_Del	DEL	GGA	GGA	-			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	GGA	GGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	11	60703785	60703787	GGA	-	DEL	TMEM132A	ENST00000005286	human	ensembl	69_37n	+1	known	in_frame_del	c.2481_2483	p.E831in_frame_del	0.159:0.667:0.684	NULL	NULL	-	no_errors	TMEM132A	HGNC	ENSG00000006118	86	0	0.00	16	2	11.11	-	-	-
TMEM175	0	genome.wustl.edu	37	4	947114	947114	+	Missense_Mutation	SNP	C	C	G			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	4	947114	947114	C	G	SNP	TMEM175	ENST00000264771	human	ensembl	69_37n	+1	known	missense	c.599	p.A200G	0.479	NULL	pfam_DUF1211_TMEM175	-	no_errors	TMEM175	HGNC	ENSG00000127419	130	0	0.00	30	6	16.67	-	-	-
TMX3	0	genome.wustl.edu	37	18	66364475	66364475	+	Missense_Mutation	SNP	T	T	A			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	18	66364475	66364475	T	A	SNP	TMX3	ENST00000299608	human	ensembl	69_37n	-1	known	missense	c.558	p.E186D	0.199	pfam_Calsequestrin,superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,pfam_Calsequestrin,superfamily_Thioredoxin-like_fold,prints_Thioredoxin	-	no_errors	TMX3	HGNC	ENSG00000166479	53	0	0.00	27	3	10.00	-	-	-
VIL1	0	genome.wustl.edu	37	2	219294019	219294019	+	Silent	SNP	G	G	T			TCGA-AC-A2FB-01A-11D-A17D-09	TCGA-AC-A2FB-11A-13D-A19T-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6e15e39d-f36b-44bf-ae27-2f52d88ef9dd	edfc49b5-8519-44db-8c28-b6ad20a7a77a	2	219294019	219294019	G	T	SNP	VIL1	ENST00000248444	human	ensembl	69_37n	+1	known	silent	c.579	p.L193	1.000	pfam_Gelsolin_dom,smart_Gelsolin	pfam_Gelsolin_dom,pfam_Villin_headpiece,superfamily_Villin_headpiece,smart_Gelsolin,smart_Villin_headpiece,prints_Gelsolin,pfscan_Villin_headpiece	-	no_errors	VIL1	HGNC	ENSG00000127831	34	0	0.00	14	3	17.65	-	-	-
