Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTS6	0	genome.wustl.edu	37	5	64748575	64748575	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	5	64748575	64748575	G	A	SNP	ADAMTS6	ENST00000381055	human	ensembl	69_37n	-1	known	missense	c.802	p.R268C	1.000	pfam_Peptidase_M12B,pfscan_Peptidase_M12B	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,prints_Peptidase_M12B_ADAM-TS,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B	-	no_errors	ADAMTS6	HGNC	ENSG00000049192	119	1	0.83	134	108	44.44	-	-	-
AMY2A	0	genome.wustl.edu	37	1	104162362	104162362	+	Missense_Mutation	SNP	A	A	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	104162362	104162362	A	T	SNP	AMY2A	ENST00000414303	human	ensembl	69_37n	+1	known	missense	c.700	p.S234C	0.994	pfam_Glyco_hydro_13_cat_dom,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom	pfam_Glyco_hydro_13_cat_dom,pfam_A-amylase_b_C,superfamily_Glycoside_hydrolase_SF,smart_Glyco_hydro_13_sub_cat_dom,smart_A-amylase_b_C,prints_Alpha_amylase	-	no_errors	AMY2A	HGNC	ENSG00000243480	91	0	0.00	22	10	31.25	-	-	-
ANGPT2	0	genome.wustl.edu	37	8	6420368	6420368	+	Missense_Mutation	SNP	C	C	G			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	8	6420368	6420368	C	G	SNP	ANGPT2	ENST00000325203	human	ensembl	69_37n	-1	known	missense	c.88	p.G30R	0.980	NULL	pfam_Fibrinogen_a/b/g_C,superfamily_Fibrinogen_a/b/g_C,smart_Fibrinogen_a/b/g_C	-	no_errors	ANGPT2	HGNC	ENSG00000091879	49	0	0.00	95	18	15.93	-	-	-
CTCF	0	genome.wustl.edu	37	16	67644796	67644799	+	Frame_Shift_Del	DEL	GAGA	GAGA	-			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	GAGA	GAGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	16	67644796	67644799	GAGA	-	DEL	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	frame_shift_del	c.61_64	p.K23fs	1.000:1.000:1.000:1.000	NULL	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	34	0	0.00	10	17	62.96	-	-	-
DNM3	0	genome.wustl.edu	37	1	171958092	171958092	+	Missense_Mutation	SNP	T	T	A			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	171958092	171958092	T	A	SNP	DNM3	ENST00000358155	human	ensembl	69_37n	+1	known	missense	c.393	p.N131K	1.000	pfam_Dynamin_GTPase,smart_Dynamin_GTPase,prints_Dynamin	pfam_Dynamin_central,pfam_Dynamin_GTPase,pfam_GED,pfam_Pleckstrin_homology,smart_Dynamin_GTPase,smart_Pleckstrin_homology,smart_GED,pfscan_Pleckstrin_homology,prints_Dynamin	-	no_errors	DNM3	HGNC	ENSG00000197959	75	0	0.00	60	17	22.08	-	-	-
GGT3P	0	genome.wustl.edu	37	22	18769203	18769203	+	RNA	SNP	G	G	A			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	22	18769203	18769203	G	A	SNP	GGT3P	ENST00000412448	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.149	-	-	-	no_errors	GGT3P	HGNC	ENSG00000197421	26	0	0.00	99	19	16.10	-	-	-
LIMA1	0	genome.wustl.edu	37	12	50616076	50616076	+	Missense_Mutation	SNP	G	G	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	50616076	50616076	G	T	SNP	LIMA1	ENST00000394943	human	ensembl	69_37n	-1	known	missense	c.358	p.Q120K	0.006	NULL	pfam_Znf_LIM,smart_Znf_LIM,pfscan_Znf_LIM	-	no_errors	LIMA1	HGNC	ENSG00000050405	127	0	0.00	80	103	56.28	-	-	-
NNT	0	genome.wustl.edu	37	5	43616033	43616033	+	Missense_Mutation	SNP	T	T	G			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	5	43616033	43616033	T	G	SNP	NNT	ENST00000264663	human	ensembl	69_37n	+1	known	missense	c.465	p.I155M	1.000	pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	pfam_NADH_DH_b,pfam_AlaDH/PNT_NAD(H)-bd,pfam_AlaDH/PNT_N,tigrfam_NADP_transhyd_a	-	no_errors	NNT	HGNC	ENSG00000112992	158	0	0.00	126	120	48.39	-	-	-
OR8D1	0	genome.wustl.edu	37	11	124179975	124179976	+	Frame_Shift_Ins	INS	-	-	AT			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	11	124179975	124179976	-	AT	INS	OR8D1	ENST00000357821	human	ensembl	69_37n	-1	known	frame_shift_ins	c.688_687	p.S229fs	0.020:0.000	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR8D1	HGNC	ENSG00000196341	47	0	0.00	25	5	16.67	-	-	-
OSBPL8	0	genome.wustl.edu	37	12	76786476	76786476	+	Missense_Mutation	SNP	G	G	A			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	76786476	76786476	G	A	SNP	OSBPL8	ENST00000261183	human	ensembl	69_37n	-1	known	missense	c.814	p.R272C	1.000	NULL	pfam_Oxysterol-bd,pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	OSBPL8	HGNC	ENSG00000091039	160	1	0.62	203	78	27.76	-	-	-
PRKCQ	0	genome.wustl.edu	37	10	6470185	6470185	+	Missense_Mutation	SNP	T	T	C			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	10	6470185	6470185	T	C	SNP	PRKCQ	ENST00000263125	human	ensembl	69_37n	-1	known	missense	c.2105	p.E702G	0.980	pirsf_Prot_kin_PKC_delta	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pkinase_C,superfamily_Kinase-like_dom,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Prot_kin_PKC_delta,prints_DAG/PE-bd,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	PRKCQ	HGNC	ENSG00000065675	89	0	0.00	109	20	15.38	-	-	-
PTPN14	0	genome.wustl.edu	37	1	214543010	214543010	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	1	214543010	214543010	G	A	SNP	PTPN14	ENST00000366956	human	ensembl	69_37n	-1	known	nonsense	c.3061	p.R1021*	1.000	pfam_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_rcpt/non-rcpt,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_Tyr_Pase_rcpt/non-rcpt	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_Dual-sp_phosphatase_cat-dom,superfamily_FERM_central,smart_Band_41_domain,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-14/21,pfscan_FERM_domain,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam	-	no_errors	PTPN14	HGNC	ENSG00000152104	87	0	0.00	200	45	18.37	-	-	-
RFPL4A	0	genome.wustl.edu	37	19	56274382	56274382	+	Silent	SNP	G	G	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	19	56274382	56274382	G	T	SNP	RFPL4A	ENST00000434937	human	ensembl	69_37n	+1	novel	silent	c.705	p.G235	0.001	pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY	pfam_RDM_domain_RFPL,pfam_SPRY_rcpt,superfamily_ConA-like_lec_gl,smart_PRY,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	RFPL4A	HGNC	ENSG00000223638	543	0	0.00	788	97	10.96	-	-	-
TRHDE	0	genome.wustl.edu	37	12	72956810	72956810	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	12	72956810	72956810	C	T	SNP	TRHDE	ENST00000261180	human	ensembl	69_37n	+1	known	nonsense	c.1897	p.Q633*	0.925	NULL	pfam_Peptidase_M1_N,prints_Peptidase_M1_N	-	no_errors	TRHDE	HGNC	ENSG00000072657	105	0	0.00	25	30	54.55	-	-	-
TRPC4	0	genome.wustl.edu	37	13	38357162	38357162	+	Silent	SNP	A	A	G			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	13	38357162	38357162	A	G	SNP	TRPC4	ENST00000379681	human	ensembl	69_37n	-1	known	silent	c.309	p.A103	0.418	superfamily_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	pfam_Ion_trans_dom,pfam_TRP_dom,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_TRPC4_channel,prints_TRPC_channel,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,tigrfam_TRP_channel	-	no_errors	TRPC4	HGNC	ENSG00000133107	68	0	0.00	20	13	39.39	-	-	-
USP32	0	genome.wustl.edu	37	17	58260550	58260550	+	Missense_Mutation	SNP	C	C	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	17	58260550	58260550	C	T	SNP	USP32	ENST00000300896	human	ensembl	69_37n	-1	known	missense	c.4099	p.A1367T	0.787	pfam_Peptidase_C19,pfscan_Peptidase_C19	pfam_Peptidase_C19,pfam_Pept_C19_DUSP,smart_EF_hand_Ca-bd,smart_Pept_C19_DUSP,pfscan_EF_HAND_2,pfscan_Peptidase_C19,prints_Recoverin	-	no_errors	USP32	HGNC	ENSG00000170832	51	0	0.00	38	27	41.54	-	-	-
ZNF717	0	genome.wustl.edu	37	3	75787068	75787069	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AO-A12B-01A-11D-A10M-09	TCGA-AO-A12B-10A-01D-A10M-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	865ebd77-7b7d-4a27-b945-df5ec8d1f86a	ce0e2cbf-a483-4093-b46a-32d1f14ea2f9	3	75787068	75787069	-	T	INS	ZNF717	ENST00000422325	human	ensembl	69_37n	-1	known	frame_shift_ins	c.1706_1705	p.G569fs	0.996:0.998	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF717	HGNC	ENSG00000227124	42	0	0.00	11	2	15.38	-	-	-
