Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCA11P	0	genome.wustl.edu	37	4	467894	467894	+	RNA	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	467894	467894	G	A	SNP	ABCA11P	ENST00000451020	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	ABCA11P	HGNC	ENSG00000251595	61	0	0.00	42	14	25.00	-	-	-
AIM1	0	genome.wustl.edu	37	6	106991455	106991455	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	106991455	106991455	G	C	SNP	AIM1	ENST00000369066	human	ensembl	69_37n	+1	known	missense	c.3798	p.M1266I	1.000	pfam_Beta/gamma_crystallin,superfamily_G_crystallin-rel,smart_Beta/gamma_crystallin,pfscan_Beta/gamma_crystallin	pfam_Beta/gamma_crystallin,pfam_Ricin_B_lectin,superfamily_G_crystallin-rel,superfamily_Ricin_B_lectin,smart_Beta/gamma_crystallin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin,pfscan_Beta/gamma_crystallin,prints_Beta/gamma_crystallin	-	no_errors	AIM1	HGNC	ENSG00000112297	540	1	0.18	395	101	20.36	-	-	-
AKR1C1	0	genome.wustl.edu	37	10	5010513	5010513	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	5010513	5010513	G	A	SNP	AKR1C1	ENST00000380872	human	ensembl	69_37n	+1	known	missense	c.382	p.V128M	0.000	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom	pfam_NADP_OxRdtase_dom,superfamily_NADP_OxRdtase_dom,prints_Aldo/keto_reductase_subgr	-	no_errors	AKR1C1	HGNC	ENSG00000187134	208	0	0.00	162	50	23.58	-	-	-
ARHGEF4	0	genome.wustl.edu	37	2	131704164	131704164	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	131704164	131704164	C	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	+1	known	missense	c.383	p.T128M	0.000	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	183	0	0.00	158	47	22.93	-	-	-
C10orf12	0	genome.wustl.edu	37	10	98744191	98744191	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	98744191	98744191	G	A	SNP	C10orf12	ENST00000286067	human	ensembl	69_37n	+1	known	missense	c.3044	p.R1015H	0.106	NULL	NULL	-	no_errors	C10orf12	HGNC	ENSG00000155640	66	0	0.00	85	18	17.48	-	-	-
C9orf163	0	genome.wustl.edu	37	9	139379395	139379395	+	Silent	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	9	139379395	139379395	C	T	SNP	C9orf163	ENST00000354376	human	ensembl	69_37n	+1	known	silent	c.495	p.L165	0.000	NULL	NULL	-	no_errors	C9orf163	HGNC	ENSG00000196366	60	0	0.00	48	19	28.36	-	-	-
CCDC138	0	genome.wustl.edu	37	2	109473397	109473397	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	109473397	109473397	A	T	SNP	CCDC138	ENST00000295124	human	ensembl	69_37n	+1	known	missense	c.1664	p.D555V	1.000	NULL	NULL	-	no_errors	CCDC138	HGNC	ENSG00000163006	280	0	0.00	196	46	19.01	-	-	-
CFHR4	0	genome.wustl.edu	37	1	196871653	196871653	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	196871653	196871653	A	G	SNP	CFHR4	ENST00000367416	human	ensembl	69_37n	+1	known	missense	c.161	p.Y54C	0.000	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR4	HGNC	ENSG00000134365	364	0	0.00	281	218	43.60	-	-	-
COL5A3	0	genome.wustl.edu	37	19	10114309	10114309	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	10114309	10114309	C	T	SNP	COL5A3	ENST00000264828	human	ensembl	69_37n	-1	known	missense	c.781	p.G261R	1.000	NULL	pfam_Collagen,pfam_Fib_collagen_C,superfamily_ConA-like_lec_gl,smart_Laminin_G,smart_Fib_collagen_C	-	no_errors	COL5A3	HGNC	ENSG00000080573	408	0	0.00	404	96	19.20	-	-	-
COQ10A	0	genome.wustl.edu	37	12	56663001	56663001	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	56663001	56663001	C	T	SNP	COQ10A	ENST00000308197	human	ensembl	69_37n	+1	known	missense	c.440	p.S147F	1.000	pfam_Polyket_cyc	pfam_Polyket_cyc	-	no_errors	COQ10A	HGNC	ENSG00000135469	127	0	0.00	146	42	22.34	-	-	-
CPAMD8	0	genome.wustl.edu	37	19	17017901	17017901	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	17017901	17017901	C	T	SNP	CPAMD8	ENST00000443236	human	ensembl	69_37n	-1	known	missense	c.4061	p.R1354Q	0.625	pfam_A2M_comp,superfamily_Terpenoid_cyclase/PrenylTrfase	pfam_A2M_comp,pfam_A2M_N_2,pfam_Methyltransf_FA,pfam_Macroglobln_a2,pfam_A-macroglobulin_rcpt-bd,pfam_A2M_N,pfam_MacrogloblnA2_thiol-ester-bond,pfam_Kazal-type_dom,pfam_Prot_inh_Kazal,superfamily_Terpenoid_cyclase/PrenylTrfase,superfamily_A-macroglobulin_rcpt-bd,smart_Prot_inh_Kazal	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CPAMD8	HGNC	ENSG00000160111	35	0	0.00	37	5	11.90	-	-	-
CTH	0	genome.wustl.edu	37	1	70897810	70897810	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	70897810	70897810	C	T	SNP	CTH	ENST00000370938	human	ensembl	69_37n	+1	known	nonsense	c.769	p.R257*	1.000	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	pfam_Cys/Met-Metab_PyrdxlP-dep_enz,pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_DegT/StrS_aminotransferase,superfamily_PyrdxlP-dep_Trfase_major_dom,pirsf_Cys/Met-Metab_PyrdxlP-dep_enz	-	no_errors	CTH	HGNC	ENSG00000116761	329	0	0.00	245	65	20.97	-	-	-
CTNNA1	0	genome.wustl.edu	37	5	138117646	138117646	+	Silent	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	138117646	138117646	C	T	SNP	CTNNA1	ENST00000302763	human	ensembl	69_37n	+1	known	silent	c.33	p.F11	1.000	NULL	pfam_Vinculin/catenin,superfamily_Vinculin/catenin,prints_Alpha_catenin,prints_Vinculin	-	no_errors	CTNNA1	HGNC	ENSG00000044115	137	0	0.00	168	43	20.28	-	-	-
DLX3	0	genome.wustl.edu	37	17	48070938	48070938	+	Silent	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	48070938	48070938	C	T	SNP	DLX3	ENST00000434704	human	ensembl	69_37n	-1	known	silent	c.342	p.E114	1.000	superfamily_Homeodomain-like	pfam_Distal-less_N,pfam_Homeodomain,superfamily_Homeodomain-like,smart_Homeodomain,pfscan_Homeodomain,prints_HTH_motif,prints_Homeobox_metazoa	-	no_errors	DLX3	HGNC	ENSG00000064195	56	0	0.00	35	31	46.97	-	-	-
DNHD1	0	genome.wustl.edu	37	11	6519529	6519529	+	Silent	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	6519529	6519529	C	G	SNP	DNHD1	ENST00000254579	human	ensembl	69_37n	+1	known	silent	c.84	p.V28	0.003	NULL	pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy,superfamily_t-SNARE	-	no_errors	DNHD1	HGNC	ENSG00000179532	34	0	0.00	21	5	19.23	-	-	-
ELAC2	0	genome.wustl.edu	37	17	12903496	12903496	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	12903496	12903496	G	A	SNP	ELAC2	ENST00000338034	human	ensembl	69_37n	-1	known	missense	c.1400	p.A467V	0.000	NULL	pfam_Beta-lactamas-like	-	no_errors	ELAC2	HGNC	ENSG00000006744	30	0	0.00	39	7	15.22	-	-	-
FAP	0	genome.wustl.edu	37	2	163044844	163044844	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	163044844	163044844	C	G	SNP	FAP	ENST00000188790	human	ensembl	69_37n	-1	known	missense	c.1649	p.R550T	0.005	NULL	pfam_Peptidase_S9B,pfam_Peptidase_S9	-	no_errors	FAP	HGNC	ENSG00000078098	160	0	0.00	128	38	22.89	-	-	-
FHDC1	0	genome.wustl.edu	37	4	153889196	153889196	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	153889196	153889196	G	C	SNP	FHDC1	ENST00000260008	human	ensembl	69_37n	+1	known	missense	c.1165	p.E389Q	0.987	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	pfam_FH2_actin-bd,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg	-	no_errors	FHDC1	HGNC	ENSG00000137460	207	0	0.00	166	41	19.71	-	-	-
GCM2	0	genome.wustl.edu	37	6	10876743	10876743	+	Nonsense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	10876743	10876743	G	A	SNP	GCM2	ENST00000379491	human	ensembl	69_37n	-1	known	nonsense	c.391	p.R131*	1.000	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	pfam_Tscrpt_reg_GCM_motif,superfamily_Tscrpt_reg_GCM_motif,pfscan_Tscrpt_reg_GCM_motif	-	no_errors	GCM2	HGNC	ENSG00000124827	80	0	0.00	64	19	22.89	-	-	-
GPR37	0	genome.wustl.edu	37	7	124404936	124404936	+	Frame_Shift_Del	DEL	G	G	-			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	124404936	124404936	G	-	DEL	GPR37	ENST00000303921	human	ensembl	69_37n	-1	known	frame_shift_del	c.95	p.P32fs	0.006	NULL	pfam_7TM_GPCR_Rhodpsn,prints_GPR37_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	GPR37	HGNC	ENSG00000170775	18	0	0.00	14	2	12.50	-	-	-
GREB1L	0	genome.wustl.edu	37	18	19085428	19085428	+	Silent	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	18	19085428	19085428	C	T	SNP	GREB1L	ENST00000424526	human	ensembl	69_37n	+1	known	silent	c.4128	p.I1376	1.000	NULL	NULL	-	no_errors	GREB1L	HGNC	ENSG00000141449	195	0	0.00	122	42	25.61	-	-	-
HCN4	0	genome.wustl.edu	37	15	73615867	73615867	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	73615867	73615867	G	A	SNP	HCN4	ENST00000261917	human	ensembl	69_37n	-1	known	missense	c.2567	p.S856F	1.000	NULL	pfam_Ion_trans_N,pfam_cNMP-bd_dom,pfam_Ion_trans_dom,superfamily_cNMP-bd-like,smart_cNMP-bd_dom,prints_K_chnl_volt-dep_EAG/ELK/ERG,pfscan_cNMP-bd_dom	-	no_errors	HCN4	HGNC	ENSG00000138622	38	0	0.00	32	6	15.38	-	-	-
HEPH	0	genome.wustl.edu	37	X	65427137	65427137	+	Silent	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	65427137	65427137	C	A	SNP	HEPH	ENST00000519389	human	ensembl	69_37n	+1	known	silent	c.2554	p.R852	0.000	superfamily_Cupredoxin	pfam_Cu-oxidase_3,pfam_Cu-oxidase_2,superfamily_Cupredoxin	-	no_errors	HEPH	HGNC	ENSG00000089472	281	1	0.35	156	52	25.00	-	-	-
IQCF3	0	genome.wustl.edu	37	3	51864469	51864469	+	Silent	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	51864469	51864469	G	A	SNP	IQCF3	ENST00000437810	human	ensembl	69_37n	+1	known	silent	c.117	p.Q39	0.679	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS	pfam_IQ_motif_EF-hand-BS,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	IQCF3	HGNC	ENSG00000229972	55	0	0.00	53	15	22.06	-	-	-
JAK3	0	genome.wustl.edu	37	19	17945508	17945508	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	19	17945508	17945508	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	missense	c.2222	p.R741Q	0.046	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	25	0	0.00	26	7	21.21	-	-	-
LPA	0	genome.wustl.edu	37	6	160968970	160968970	+	Splice_Site	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	6	160968970	160968970	C	T	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	splice_site	c.5156-1	e32-1	0.965	-	-	-	no_errors	LPA	HGNC	ENSG00000198670	230	0	0.00	166	61	26.87	-	-	-
LRRC16B	0	genome.wustl.edu	37	14	24532005	24532005	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	24532005	24532005	C	T	SNP	LRRC16B	ENST00000342740	human	ensembl	69_37n	+1	known	missense	c.2656	p.R886W	1.000	NULL	smart_Leu-rich_rpt_RNase_inh_sub-typ	-	no_errors	LRRC16B	HGNC	ENSG00000186648	74	0	0.00	78	24	23.53	-	-	-
LY75	0	genome.wustl.edu	37	2	160714934	160714934	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	160714934	160714934	A	T	SNP	LY75	ENST00000554112	human	ensembl	69_37n	-1	known	missense	c.2322	p.F774L	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin	pfam_C-type_lectin,pfam_FN_type2_col-bd,superfamily_C-type_lectin_fold,superfamily_Ricin_B_lectin,superfamily_Kringle-like,smart_Ricin_B_lectin,smart_FN_type2_col-bd,smart_C-type_lectin,pfscan_FN_type2_col-bd,pfscan_C-type_lectin,pfscan_Ricin_B_lectin	-	no_errors	LY75	HGNC	ENSG00000054219	300	0	0.00	218	55	20.15	-	-	-
MAOA	0	genome.wustl.edu	37	X	43590602	43590602	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43590602	43590602	A	G	SNP	MAOA	ENST00000338702	human	ensembl	69_37n	+1	known	missense	c.760	p.I254V	0.885	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_mOase_FAD-bd,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_FAD_bind_dom,prints_Flavin_amine_oxidase	-	no_errors	MAOA	HGNC	ENSG00000189221	126	0	0.00	116	20	14.71	-	-	-
MAOB	0	genome.wustl.edu	37	X	43698178	43698178	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	X	43698178	43698178	G	T	SNP	MAOB	ENST00000378069	human	ensembl	69_37n	-1	known	missense	c.215	p.A72D	1.000	pfam_Amino_oxidase	pfam_Amino_oxidase,pfam_FAD-dep_OxRdtase,pfam_FAD_bind_dom,pfam_Pyr_OxRdtase_NAD-bd_dom,pfam_mOase_FAD-bd,prints_Flavin_amine_oxidase	-	no_errors	MAOB	HGNC	ENSG00000069535	253	0	0.00	163	48	22.75	-	-	-
MTSS1	0	genome.wustl.edu	37	8	125565583	125565583	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	125565583	125565583	G	A	SNP	MTSS1	ENST00000518547	human	ensembl	69_37n	-1	known	missense	c.1918	p.R640W	0.108	NULL	pfam_IRSp53/MIM_homology_IMD,pfscan_WH2_dom	-	no_errors	MTSS1	HGNC	ENSG00000170873	120	0	0.00	172	31	15.20	-	-	-
MYT1L	0	genome.wustl.edu	37	2	1926197	1926197	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	1926197	1926197	C	A	SNP	MYT1L	ENST00000399161	human	ensembl	69_37n	-1	known	missense	c.1344	p.M448I	1.000	NULL	pfam_Myelin_TF,pfam_Znf_C2HC	-	no_errors	MYT1L	HGNC	ENSG00000186487	256	0	0.00	225	57	20.21	-	-	-
NOD1	0	genome.wustl.edu	37	7	30496531	30496531	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	30496531	30496531	C	G	SNP	NOD1	ENST00000222823	human	ensembl	69_37n	-1	known	missense	c.7	p.E3Q	0.446	NULL	pfam_CARD,superfamily_DEATH-like,smart_Leu-rich_rpt_RNase_inh_sub-typ,pfscan_NACHT_NTPase,pfscan_CARD	-	no_errors	NOD1	HGNC	ENSG00000106100	184	0	0.00	138	54	28.12	-	-	-
PAICS	0	genome.wustl.edu	37	4	57314718	57314718	+	Silent	SNP	G	G	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	4	57314718	57314718	G	T	SNP	PAICS	ENST00000264221	human	ensembl	69_37n	+1	known	silent	c.528	p.L176	1.000	pfam_SAICAR_synth	pfam_SAICAR_synth,pfam_N5-CAIR_Mutase_PurE_dom,superfamily_N5-CAIR_Mutase_PurE_dom,tigrfam_N5-CAIR_Mutase_PurE_dom	-	no_errors	PAICS	HGNC	ENSG00000128050	134	0	0.00	118	40	25.32	-	-	-
PC	0	genome.wustl.edu	37	11	66617203	66617203	+	Nonsense_Mutation	SNP	G	G	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	66617203	66617203	G	T	SNP	PC	ENST00000393958	human	ensembl	69_37n	-1	known	nonsense	c.3026	p.S1009*	0.996	pfam_Carboxylase_cons_dom,pirsf_Pyruv_COase,tigrfam_Pyruv_COase	pfam_CbamoylP_synth_lsu-like_ATP-bd,pfam_Carboxylase_cons_dom,pfam_CarbamoylP_synth_lsu_N,pfam_Biotin_COase_C,pfam_PYR_CT,pfam_Biotin_lipoyl,pfam_Dala_Dala_lig_C,superfamily_PreATP-grasp_fold,superfamily_Rudment_hybrid_motif,superfamily_Single_hybrid_motif,smart_Biotin_COase_C,pirsf_Pyruv_COase,pfscan_ATP-grasp,pfscan_Biotin_carboxylation_dom,pfscan_PYR_CT,pfscan_Biotin_lipoyl,tigrfam_Pyruv_COase	-	no_errors	PC	HGNC	ENSG00000173599	56	0	0.00	97	15	13.39	-	-	-
PCDHB7	0	genome.wustl.edu	37	5	140552846	140552846	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	140552846	140552846	G	C	SNP	PCDHB7	ENST00000231137	human	ensembl	69_37n	+1	known	missense	c.430	p.E144Q	0.999	pfam_Cadherin,superfamily_Cadherin-like,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDHB7	HGNC	ENSG00000113212	82	0	0.00	61	36	37.11	-	-	-
PLA1A	0	genome.wustl.edu	37	3	119327774	119327774	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	119327774	119327774	C	T	SNP	PLA1A	ENST00000273371	human	ensembl	69_37n	+1	known	missense	c.433	p.L145F	0.002	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH	pfam_Lipase_N,pirsf_Lipoprotein_lipase_LIPH,prints_Lipase	-	no_errors	PLA1A	HGNC	ENSG00000144837	285	0	0.00	197	72	26.77	-	-	-
RAB13	0	genome.wustl.edu	37	1	153954902	153954902	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	153954902	153954902	G	A	SNP	RAB13	ENST00000368575	human	ensembl	69_37n	-1	known	missense	c.499	p.R167W	1.000	pfam_Small_GTPase,pfam_Small_GTPase_ARF/SAR,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,pfam_SRP_receptor_beta_su,smart_Small_GTPase_ARF,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB13	HGNC	ENSG00000143545	236	0	0.00	325	53	14.02	-	-	-
SEC24C	0	genome.wustl.edu	37	10	75528883	75528883	+	Silent	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75528883	75528883	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	+1	known	silent	c.2397	p.L799	0.989	pfam_Sec23_24_beta_S	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	112	1	0.88	115	32	21.77	-	-	-
SEC24C	0	genome.wustl.edu	37	10	75530080	75530080	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530080	75530080	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	+1	known	nonsense	c.2905	p.R969*	1.000	pfam_Gelsolin_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	185	1	0.47	130	48	23.65	-	-	-
SEC24C	0	genome.wustl.edu	37	10	75530798	75530798	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	10	75530798	75530798	C	T	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	+1	known	missense	c.3230	p.S1077F	1.000	NULL	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	195	0	0.00	145	35	19.44	-	-	-
SLC30A10	0	genome.wustl.edu	37	1	220089147	220089147	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	220089147	220089147	C	G	SNP	SLC30A10	ENST00000366926	human	ensembl	69_37n	-1	known	missense	c.1102	p.E368Q	1.000	pfam_Cation_efflux,tigrfam_Cation_efflux	pfam_Cation_efflux,tigrfam_Cation_efflux	-	no_errors	SLC30A10	HGNC	ENSG00000196660	64	0	0.00	95	17	15.18	-	-	-
SLC38A3	0	genome.wustl.edu	37	3	50252845	50252845	+	RNA	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	50252845	50252845	C	T	SNP	SLC38A3	ENST00000420502	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.910	-	-	-	no_errors	SLC38A3	HGNC	ENSG00000188338	95	0	0.00	72	19	20.88	-	-	-
SPATA13	0	genome.wustl.edu	37	13	24798398	24798398	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	13	24798398	24798398	C	G	SNP	SPATA13	ENST00000382108	human	ensembl	69_37n	+1	known	missense	c.1331	p.S444C	0.008	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	SPATA13	HGNC	ENSG00000182957	87	0	0.00	63	16	20.25	-	-	-
SRCAP	0	genome.wustl.edu	37	16	30732773	30732773	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	30732773	30732773	C	T	SNP	SRCAP	ENST00000262518	human	ensembl	69_37n	+1	known	missense	c.3517	p.P1173S	1.000	NULL	pfam_SNF2_N,pfam_HSA,pfam_Helicase_C,smart_HAS_subgr,smart_Helicase_ATP-bd,smart_Helicase_C,smart_AT_hook_DNA-bd_motif,pfscan_Helicase/SANT-assoc_DNA-bd,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,prints_AT_hook-like	-	no_errors	SRCAP	HGNC	ENSG00000080603	62	0	0.00	68	18	20.93	-	-	-
ST6GALNAC2	0	genome.wustl.edu	37	17	74566725	74566725	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	17	74566725	74566725	G	A	SNP	ST6GALNAC2	ENST00000225276	human	ensembl	69_37n	-1	known	missense	c.695	p.S232L	0.410	pfam_Glyco_trans_29,pirsf_Sialyl_trans	pfam_Glyco_trans_29,pirsf_Sialyl_trans	-	no_errors	ST6GALNAC2	HGNC	ENSG00000070731	41	0	0.00	78	21	21.21	-	-	-
SUN5	0	genome.wustl.edu	37	20	31573550	31573550	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	20	31573550	31573550	C	A	SNP	SUN5	ENST00000356173	human	ensembl	69_37n	-1	known	missense	c.889	p.V297F	0.997	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	pfam_Sad1_UNC_C,superfamily_Galactose-bd-like	-	no_errors	SUN5	HGNC	ENSG00000167098	104	0	0.00	190	27	12.44	-	-	-
SYNE2	0	genome.wustl.edu	37	14	64540727	64540727	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	14	64540727	64540727	C	A	SNP	SYNE2	ENST00000358025	human	ensembl	69_37n	+1	known	missense	c.10739	p.T3580N	0.546	NULL	pfam_CH-domain,pfam_KASH,pfam_Spectrin_repeat,pfam_CAMSAP_CH,superfamily_CH-domain,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE2	HGNC	ENSG00000054654	210	1	0.47	143	28	16.37	-	-	-
TBX3	0	genome.wustl.edu	37	12	115118757	115118758	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	12	115118757	115118758	-	C	INS	TBX3	ENST00000257566	human	ensembl	69_37n	-1	known	frame_shift_ins	c.584_583	p.E195fs	1.000:1.000	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box	pfam_TF_T-box,pfam_TBX,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX3	HGNC	ENSG00000135111	206	0	0.00	172	68	28.33	-	-	-
TMC7	0	genome.wustl.edu	37	16	19020581	19020581	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	16	19020581	19020581	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	+1	known	missense	c.155	p.R52K	0.566	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	172	0	0.00	157	27	14.67	-	-	-
TMEM191A	0	genome.wustl.edu	37	22	21055496	21055496	+	RNA	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	22	21055496	21055496	G	A	SNP	TMEM191A	ENST00000359859	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.176	-	-	-	no_errors	TMEM191A	HGNC	ENSG00000226287	479	0	0.00	337	99	22.71	-	-	-
TNKS	0	genome.wustl.edu	37	8	9619112	9619112	+	Silent	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	8	9619112	9619112	C	A	SNP	TNKS	ENST00000310430	human	ensembl	69_37n	+1	known	silent	c.3240	p.I1080	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_Ankyrin_rpt,pfam_Poly(ADP-ribose)pol_cat_dom,pfam_SAM_2,pfam_SAM_type1,superfamily_Ankyrin_rpt-contain_dom,superfamily_SAM/pointed,smart_Ankyrin_rpt,smart_SAM,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SAM,pfscan_Poly(ADP-ribose)pol_cat_dom	-	no_errors	TNKS	HGNC	ENSG00000173273	276	1	0.36	106	41	27.89	-	-	-
TRIM45	0	genome.wustl.edu	37	1	117663630	117663630	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	1	117663630	117663630	C	G	SNP	TRIM45	ENST00000256649	human	ensembl	69_37n	-1	known	missense	c.194	p.R65P	0.999	smart_Znf_RING,pfscan_Znf_RING	pfam_Filamin/ABP280_repeat-like,pfam_Znf_B-box,superfamily_Ig_E-set,smart_Znf_RING,smart_Znf_B-box,smart_Bbox_C,smart_Filamin,pfscan_Filamin/ABP280_repeat-like,pfscan_Znf_B-box,pfscan_Znf_RING	-	no_errors	TRIM45	HGNC	ENSG00000134253	66	0	0.00	49	11	18.33	-	-	-
TRIM49B	0	genome.wustl.edu	37	11	49053416	49053416	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	49053416	49053416	G	A	SNP	TRIM49B	ENST00000332682	human	ensembl	69_37n	+1	known	missense	c.265	p.E89K	0.710	pfam_Znf_B-box,smart_Znf_B-box,pfscan_Znf_B-box	pfam_SPRY_rcpt,pfam_Znf_B-box,superfamily_ConA-like_lec_gl,smart_Znf_RING,smart_Znf_B-box,smart_SPla/RYanodine_receptor_subgr,pfscan_B30.2/SPRY,pfscan_Znf_B-box,pfscan_Znf_RING,prints_Butyrophylin	-	no_errors	TRIM49B	HGNC	ENSG00000182053	232	0	0.00	183	63	25.61	-	-	-
TRIO	0	genome.wustl.edu	37	5	14472760	14472760	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	14472760	14472760	T	C	SNP	TRIO	ENST00000344204	human	ensembl	69_37n	+1	known	missense	c.5972	p.V1991A	1.000	pfam_DH-domain,superfamily_DH-domain,smart_DH-domain,pfscan_DH-domain	pfam_DH-domain,pfam_Prot_kinase_cat_dom,pfam_Spectrin_repeat,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ig_I-set,pfam_SH3_domain,superfamily_Kinase-like_dom,superfamily_DH-domain,superfamily_SH3_domain,superfamily_CRAL-TRIO_dom,superfamily_Capsid/spike_ssDNA_virus,smart_CRAL-TRIO_dom,smart_Spectrin/alpha-actinin,smart_DH-domain,smart_Pleckstrin_homology,smart_SH3_domain,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_CRAL-TRIO_dom,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,pfscan_DH-domain	-	no_errors	TRIO	HGNC	ENSG00000038382	557	0	0.00	474	125	20.87	-	-	-
TTN	0	genome.wustl.edu	37	2	179600355	179600355	+	Missense_Mutation	SNP	C	C	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	179600355	179600355	C	A	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.11086	p.D3696Y	1.000	pfam_Ig_I-set,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	269	0	0.00	181	55	23.21	-	-	-
UBE3A	0	genome.wustl.edu	37	15	25616325	25616325	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	15	25616325	25616325	C	G	SNP	UBE3A	ENST00000397954	human	ensembl	69_37n	-1	known	missense	c.1005	p.Q335H	1.000	pirsf_Ubiquitin-protein_ligase_E6-AP	pfam_HECT,superfamily_HECT,smart_HECT,pirsf_Ubiquitin-protein_ligase_E6-AP,pfscan_HECT	-	no_errors	UBE3A	HGNC	ENSG00000114062	189	0	0.00	125	19	13.10	-	-	-
WDFY1	0	genome.wustl.edu	37	2	224782704	224782704	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	2	224782704	224782704	C	T	SNP	WDFY1	ENST00000233055	human	ensembl	69_37n	-1	known	missense	c.161	p.R54K	1.000	superfamily_WD40_repeat_dom,pfscan_WD40_repeat_dom	pfam_WD40_repeat,pfam_Znf_FYVE,superfamily_WD40_repeat_dom,superfamily_Znf_FYVE_PHD,smart_WD40_repeat,smart_Znf_FYVE,pfscan_Znf_FYVE-rel,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_errors	WDFY1	HGNC	ENSG00000085449	190	0	0.00	151	43	22.16	-	-	-
WEE1	0	genome.wustl.edu	37	11	9598152	9598152	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	11	9598152	9598152	G	A	SNP	WEE1	ENST00000450114	human	ensembl	69_37n	+1	known	missense	c.965	p.G322E	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Wee1-like_protein_kinase,pfscan_Prot_kinase_cat_dom	-	no_errors	WEE1	HGNC	ENSG00000166483	425	0	0.00	278	64	18.66	-	-	-
WNT2	0	genome.wustl.edu	37	7	116955280	116955280	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	7	116955280	116955280	C	T	SNP	WNT2	ENST00000265441	human	ensembl	69_37n	-1	known	missense	c.433	p.A145T	0.064	pfam_Wnt,smart_Wnt	pfam_Wnt,smart_Wnt,prints_Wnt,prints_Wnt2	-	no_errors	WNT2	HGNC	ENSG00000105989	262	0	0.00	210	59	21.93	-	-	-
XBP1	0	genome.wustl.edu	37	22	29191587	29191588	+	Frame_Shift_Ins	INS	-	-	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	22	29191587	29191588	-	G	INS	XBP1	ENST00000344347	human	ensembl	69_37n	-1	known	frame_shift_ins	c.707_706	p.L236fs	1.000:1.000	NULL	pfam_bZIP_2,pfam_bZIP_1,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	XBP1	HGNC	ENSG00000100219	110	0	0.00	87	21	19.44	-	-	-
ZNF131	0	genome.wustl.edu	37	5	43175004	43175004	+	Silent	SNP	G	G	A			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	5	43175004	43175004	G	A	SNP	ZNF131	ENST00000399534	human	ensembl	69_37n	+1	known	silent	c.1641	p.R547	1.000	NULL	pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_Znf_C2H2-like,pfscan_BTB/POZ-like,pfscan_Znf_C2H2	-	no_errors	ZNF131	HGNC	ENSG00000172262	97	0	0.00	78	43	35.54	-	-	-
ZNF295-AS1	0	genome.wustl.edu	37	21	43444748	43444748	+	RNA	SNP	C	C	G			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	21	43444748	43444748	C	G	SNP	ZNF295-AS1	ENST00000412906	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	ZNF295-AS1	HGNC	ENSG00000237232	222	0	0.00	151	52	25.62	-	-	-
ZNF660	0	genome.wustl.edu	37	3	44636310	44636310	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A1AK-01A-21D-A12Q-09	TCGA-AR-A1AK-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	52f7c22f-84cb-4263-93bf-1ae8cf8abbd2	eccf2a84-ba31-455f-942a-2c1dc7b08cc8	3	44636310	44636310	C	T	SNP	ZNF660	ENST00000322734	human	ensembl	69_37n	+1	known	nonsense	c.625	p.Q209*	0.120	smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF660	HGNC	ENSG00000144792	280	0	0.00	184	49	21.03	-	-	-
