Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
C14orf102	0	genome.wustl.edu	37	14	90754814	90754814	+	Silent	SNP	G	G	A			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	14	90754814	90754814	G	A	SNP	C14orf102	ENST00000354366	human	ensembl	69_37n	-1	known	silent	c.2905	p.L969	1.000	NULL	pfam_NRDE-2	-	no_errors	C14orf102	HGNC	ENSG00000119720	184	0	0.00	231	37	13.81	-	-	-
CEP170	0	genome.wustl.edu	37	1	243349521	243349521	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	1	243349521	243349521	C	G	SNP	CEP170	ENST00000336415	human	ensembl	69_37n	-1	novel	missense	c.1017	p.K339N	1.000	NULL	superfamily_Fibronectin_type3	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	CEP170	HGNC	ENSG00000143702	356	0	0.00	331	46	12.20	-	-	-
COL6A5	0	genome.wustl.edu	37	3	130150403	130150403	+	Missense_Mutation	SNP	C	C	G			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	3	130150403	130150403	C	G	SNP	COL6A5	ENST00000265379	human	ensembl	69_37n	+1	known	missense	c.5343	p.I1781M	0.907	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Collagen,smart_VWF_A,pfscan_VWF_A	-	no_errors	COL6A5	HGNC	ENSG00000172752	140	0	0.00	103	12	10.43	-	-	-
CYP1A1	0	genome.wustl.edu	37	15	75015349	75015349	+	Silent	SNP	T	T	C			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	75015349	75015349	T	C	SNP	CYP1A1	ENST00000379727	human	ensembl	69_37n	-1	known	silent	c.90	p.R30	0.000	NULL	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-I_CYP1,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450	-	no_errors	CYP1A1	HGNC	ENSG00000140465	70	0	0.00	100	18	15.25	-	-	-
ERP29	0	genome.wustl.edu	37	12	112460210	112460210	+	Silent	SNP	C	C	G			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	12	112460210	112460210	C	G	SNP	ERP29	ENST00000261735	human	ensembl	69_37n	+1	known	silent	c.540	p.L180	0.886	pfam_ER_p29_C,superfamily_ER_p29_C,pirsf_ER_p29	pfam_ERp29_N,pfam_ER_p29_C,superfamily_ER_p29_C,superfamily_Thioredoxin-like_fold,pirsf_ER_p29	-	no_errors	ERP29	HGNC	ENSG00000089248	90	0	0.00	64	8	11.11	-	-	-
GRIN2D	0	genome.wustl.edu	37	19	48945508	48945508	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	48945508	48945508	G	A	SNP	GRIN2D	ENST00000263269	human	ensembl	69_37n	+1	known	missense	c.2542	p.V848I	1.000	pfam_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2D	HGNC	ENSG00000105464	116	0	0.00	124	23	15.65	-	-	-
SH2D3A	0	genome.wustl.edu	37	19	6754155	6754155	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	19	6754155	6754155	G	A	SNP	SH2D3A	ENST00000245908	human	ensembl	69_37n	-1	known	missense	c.1292	p.T431M	1.000	pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_RasGRF_CDC25	pfam_SH2,pfam_RasGRF_CDC25,superfamily_Ras_GEF_dom,smart_SH2,smart_RasGRF_CDC25,pfscan_SH2,prints_SH2	-	no_errors	SH2D3A	HGNC	ENSG00000125731	33	0	0.00	49	6	10.91	-	-	-
SLC24A1	0	genome.wustl.edu	37	15	65918127	65918127	+	Missense_Mutation	SNP	T	T	G			TCGA-AR-A1AO-01A-11D-A12Q-09	TCGA-AR-A1AO-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b841db95-2eff-4181-8d44-3cde2f2f9e70	1569c114-c779-4135-9978-99aa3ac67035	15	65918127	65918127	T	G	SNP	SLC24A1	ENST00000261892	human	ensembl	69_37n	+1	known	missense	c.1709	p.I570R	0.998	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	pfam_NaCa_Exmemb,tigrfam_K-dep_Na/Ca-exchanger,tigrfam_K-dep_Na/Ca-exchanger-like	-	no_errors	SLC24A1	HGNC	ENSG00000074621	644	0	0.00	807	115	12.47	-	-	-
