Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAMTSL1	0	genome.wustl.edu	37	9	18908545	18908545	+	Silent	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	9	18908545	18908545	G	A	SNP	ADAMTSL1	ENST00000380545	human	ensembl	69_37n	+1	putative	silent	c.1391	p.*464	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_PLAC,pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Ig_sub,smart_Ig_sub2,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	ADAMTSL1	HGNC	ENSG00000178031	55	0	0.00	97	28	22.40	-	-	-
AKD1	0	genome.wustl.edu	37	6	109863350	109863350	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	109863350	109863350	C	T	SNP	AKD1	ENST00000424296	human	ensembl	69_37n	-1	known	missense	c.3250	p.E1084K	1.000	smart_AAA+_ATPase	pfam_Adenylate_kin,pfam_YHS,smart_AAA+_ATPase	-	no_errors	AKD1	HGNC	ENSG00000155085	89	0	0.00	197	47	19.26	-	-	-
ANKHD1	0	genome.wustl.edu	37	5	139884447	139884447	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	5	139884447	139884447	C	T	SNP	ANKHD1	ENST00000297183	human	ensembl	69_37n	+1	known	nonsense	c.3046	p.Q1016*	1.000	pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_errors	ANKHD1	HGNC	ENSG00000131503	54	0	0.00	92	12	11.32	-	-	-
ATP2A1	0	genome.wustl.edu	37	16	28909594	28909594	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	28909594	28909594	G	A	SNP	ATP2A1	ENST00000357084	human	ensembl	69_37n	+1	known	missense	c.1586	p.R529Q	1.000	superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Ca-transp	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_ATPase_P-typ_cation-transptr_N,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,smart_ATPase_P-typ_cation-transptr_N,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP2A1	HGNC	ENSG00000196296	40	0	0.00	47	20	29.85	-	-	-
C1orf173	0	genome.wustl.edu	37	1	75038972	75038972	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	75038972	75038972	G	A	SNP	C1orf173	ENST00000326665	human	ensembl	69_37n	-1	known	missense	c.2422	p.P808S	0.001	NULL	NULL	-	no_errors	C1orf173	HGNC	ENSG00000178965	63	0	0.00	135	35	20.59	-	-	-
C7orf26	0	genome.wustl.edu	37	7	6639592	6639592	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	7	6639592	6639592	C	T	SNP	C7orf26	ENST00000344417	human	ensembl	69_37n	+1	known	missense	c.713	p.T238I	1.000	NULL	NULL	-	no_errors	C7orf26	HGNC	ENSG00000146576	41	0	0.00	124	34	21.52	-	-	-
CDC42BPA	0	genome.wustl.edu	37	1	227300567	227300567	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	227300567	227300567	C	T	SNP	CDC42BPA	ENST00000334218	human	ensembl	69_37n	-1	known	silent	c.1695	p.L565	1.000	NULL	pfam_Citron,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Myotonic_dystrophy_kinase_coil,pfam_Pkinase_C,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Kinase-like_dom,superfamily_WD40_repeat_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_Pleckstrin_homology,smart_Citron,smart_PAK_box_Rho-bd,pfscan_PAK_box_Rho-bd,pfscan_Pleckstrin_homology,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_Prot_kinase_cat_dom	-	no_errors	CDC42BPA	HGNC	ENSG00000143776	94	0	0.00	387	67	14.76	-	-	-
CDC73	0	genome.wustl.edu	37	1	193121549	193121549	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	193121549	193121549	A	T	SNP	CDC73	ENST00000367435	human	ensembl	69_37n	+1	known	missense	c.947	p.H316L	1.000	pfam_RNA_pol_access_fac_Cdc73	pfam_RNA_pol_access_fac_Cdc73	-	no_errors	CDC73	HGNC	ENSG00000134371	62	0	0.00	171	31	15.35	-	-	-
CDH1	0	genome.wustl.edu	37	16	68835780	68835781	+	Frame_Shift_Ins	INS	-	-	C			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	68835780	68835781	-	C	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.371_372	p.P127fs	0.005:0.015	superfamily_Cadherin-like	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	25	0	0.00	53	24	31.17	-	-	-
CNTRL	0	genome.wustl.edu	37	9	123880638	123880638	+	Silent	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	9	123880638	123880638	G	A	SNP	CNTRL	ENST00000238341	human	ensembl	69_37n	+1	known	silent	c.1470	p.G490	1.000	NULL	pfam_Leu-rich_rpt,superfamily_Prefoldin,superfamily_tRNA-bd_arm,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	CNTRL	HGNC	ENSG00000119397	35	0	0.00	79	17	17.71	-	-	-
EPHB1	0	genome.wustl.edu	37	3	134911580	134911580	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	134911580	134911580	G	A	SNP	EPHB1	ENST00000398015	human	ensembl	69_37n	+1	known	missense	c.2045	p.R682H	1.000	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB1	HGNC	ENSG00000154928	104	0	0.00	119	37	23.72	-	-	-
FAM171A1	0	genome.wustl.edu	37	10	15255350	15255351	+	Frame_Shift_Ins	INS	-	-	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	10	15255350	15255351	-	T	INS	FAM171A1	ENST00000378116	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2237_2236	p.M746fs	1.000:1.000	pfam_Uncharacterised_FAM171	pfam_Uncharacterised_FAM171	-	no_errors	FAM171A1	HGNC	ENSG00000148468	25	0	0.00	70	20	22.22	-	-	-
FBXL14	0	genome.wustl.edu	37	12	1702885	1702885	+	Silent	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	12	1702885	1702885	G	A	SNP	FBXL14	ENST00000339235	human	ensembl	69_37n	-1	known	silent	c.348	p.I116	1.000	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,pfam_Leu-rich_rpt_2,superfamily_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp	-	no_errors	FBXL14	HGNC	ENSG00000171823	36	0	0.00	25	9	26.47	-	-	-
FBXL2	0	genome.wustl.edu	37	3	33416839	33416839	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	33416839	33416839	C	T	SNP	FBXL2	ENST00000484457	human	ensembl	69_37n	+1	known	silent	c.717	p.L239	0.999	smart_Leu-rich_rpt_Cys-con_subtyp	pfam_Leu-rich_rpt,pfam_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_Leu-rich_rpt_Cys-con_subtyp,pfscan_F-box_dom_cyclin-like	-	no_errors	FBXL2	HGNC	ENSG00000153558	67	0	0.00	143	35	19.66	-	-	-
FOXJ2	0	genome.wustl.edu	37	12	8197502	8197502	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	12	8197502	8197502	C	T	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	+1	known	silent	c.765	p.F255	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	76	0	0.00	149	26	14.86	-	-	-
FZD5	0	genome.wustl.edu	37	2	208633332	208633332	+	Silent	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	208633332	208633332	G	A	SNP	FZD5	ENST00000295417	human	ensembl	69_37n	-1	known	silent	c.132	p.I44	1.000	pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom	pfam_Frizzled,pfam_Frizzled_dom,superfamily_Frizzled_dom,smart_Frizzled_dom,pfscan_Frizzled_dom,pfscan_GPCR_2-like,prints_Frizzled	-	no_errors	FZD5	HGNC	ENSG00000163251	64	0	0.00	55	9	14.06	-	-	-
GMEB1	0	genome.wustl.edu	37	1	29041281	29041281	+	Missense_Mutation	SNP	A	A	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	29041281	29041281	A	T	SNP	GMEB1	ENST00000294409	human	ensembl	69_37n	+1	known	missense	c.1718	p.D573V	1.000	NULL	pfam_SAND_dom,superfamily_SAND_dom-like,smart_SAND_dom,pfscan_SAND_dom	-	no_errors	GMEB1	HGNC	ENSG00000162419	20	0	0.00	21	8	27.59	-	-	-
HEATR5A	0	genome.wustl.edu	37	14	31763188	31763188	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	14	31763188	31763188	C	T	SNP	HEATR5A	ENST00000538864	human	ensembl	69_37n	-1	novel	missense	c.4400	p.R1467K	0.018	superfamily_ARM-type_fold	superfamily_ARM-type_fold	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	HEATR5A	HGNC	ENSG00000129493	137	0	0.00	323	69	17.60	-	-	-
HIPK2	0	genome.wustl.edu	37	7	139416554	139416554	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	7	139416554	139416554	C	T	SNP	HIPK2	ENST00000406875	human	ensembl	69_37n	-1	known	missense	c.280	p.V94M	0.995	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	HIPK2	HGNC	ENSG00000064393	148	0	0.00	185	48	20.60	-	-	-
HK2	0	genome.wustl.edu	37	2	75107455	75107455	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	75107455	75107455	C	T	SNP	HK2	ENST00000290573	human	ensembl	69_37n	+1	known	silent	c.1329	p.L443	1.000	pfam_Hexokinase_C	pfam_Hexokinase_C,pfam_Hexokinase_N,prints_Hexokinase	-	no_errors	HK2	HGNC	ENSG00000159399	41	0	0.00	26	14	35.00	-	-	-
IFFO2	0	genome.wustl.edu	37	1	19246221	19246221	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	1	19246221	19246221	A	G	SNP	IFFO2	ENST00000455833	human	ensembl	69_37n	-1	known	missense	c.773	p.I258T	1.000	NULL	pfam_F	-	no_errors	IFFO2	HGNC	ENSG00000169991	107	0	0.00	123	20	13.99	-	-	-
KIAA0232	0	genome.wustl.edu	37	4	6865788	6865788	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	6865788	6865788	G	A	SNP	KIAA0232	ENST00000307659	human	ensembl	69_37n	+1	known	missense	c.3679	p.E1227K	0.999	NULL	NULL	-	no_errors	KIAA0232	HGNC	ENSG00000170871	26	0	0.00	92	22	19.30	-	-	-
MEA1	0	genome.wustl.edu	37	6	42980990	42980990	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	42980990	42980990	C	T	SNP	MEA1	ENST00000244711	human	ensembl	69_37n	-1	known	missense	c.166	p.E56K	1.000	pfam_MEA1	pfam_MEA1	-	no_errors	MEA1	HGNC	ENSG00000124733	63	0	0.00	101	18	15.13	-	-	-
MORC4	0	genome.wustl.edu	37	X	106228454	106228454	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	X	106228454	106228454	C	T	SNP	MORC4	ENST00000355610	human	ensembl	69_37n	-1	known	silent	c.546	p.E182	1.000	superfamily_ATPase-like_ATP-bd	pfam_Znf_CW,pfam_ATPase-like_ATP-bd,superfamily_ATPase-like_ATP-bd,superfamily_Prefoldin,pfscan_Znf_CW	-	no_errors	MORC4	HGNC	ENSG00000133131	44	0	0.00	88	29	24.79	-	-	-
NEK1	0	genome.wustl.edu	37	4	170400599	170400599	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	170400599	170400599	C	T	SNP	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	missense	c.2094	p.M698I	0.006	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	27	0	0.00	57	15	20.83	-	-	-
NHSL1	0	genome.wustl.edu	37	6	138768229	138768229	+	Nonsense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	138768229	138768229	C	T	SNP	NHSL1	ENST00000427025	human	ensembl	69_37n	-1	known	nonsense	c.585	p.W195*	1.000	NULL	NULL	-	no_errors	NHSL1	HGNC	ENSG00000135540	156	0	0.00	288	79	21.53	-	-	-
NOX3	0	genome.wustl.edu	37	6	155750167	155750167	+	Silent	SNP	G	G	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	6	155750167	155750167	G	T	SNP	NOX3	ENST00000159060	human	ensembl	69_37n	-1	known	silent	c.906	p.P302	0.244	pfam_FAD-bd_8,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl	pfam_Fe_red_NAD-bd_6,pfam_FAD-bd_8,pfam_Fe3_Rdtase_TM_dom,pfam_OxRdtase_FAD-bd_dom,superfamily_Riboflavin_synthase-like_b-brl,prints_Cyt_b245_heavy_chain	-	no_errors	NOX3	HGNC	ENSG00000074771	22	0	0.00	44	10	18.52	-	-	-
NR3C2	0	genome.wustl.edu	37	4	149357960	149357960	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	4	149357960	149357960	C	T	SNP	NR3C2	ENST00000355292	human	ensembl	69_37n	-1	known	missense	c.53	p.R18Q	1.000	NULL	pfam_Nucl_hrmn_rcpt_lig-bd_core,pfam_Znf_hrmn_rcpt,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	NR3C2	HGNC	ENSG00000151623	38	0	0.00	66	23	25.84	-	-	-
PCDH11X	0	genome.wustl.edu	37	X	91873605	91873605	+	Nonsense_Mutation	SNP	C	C	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	X	91873605	91873605	C	A	SNP	PCDH11X	ENST00000373094	human	ensembl	69_37n	+1	known	nonsense	c.3710	p.S1237*	0.151	NULL	pfam_Cadherin,pfam_Protocadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH11X	HGNC	ENSG00000102290	148	0	0.00	244	68	21.79	-	-	-
PDILT	0	genome.wustl.edu	37	16	20380840	20380840	+	Missense_Mutation	SNP	G	G	A			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	20380840	20380840	G	A	SNP	PDILT	ENST00000302451	human	ensembl	69_37n	-1	known	missense	c.1090	p.R364C	0.000	superfamily_Thioredoxin-like_fold	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	-	no_errors	PDILT	HGNC	ENSG00000169340	84	0	0.00	228	64	21.92	-	-	-
RBMXL3	0	genome.wustl.edu	37	X	114426627	114426627	+	Missense_Mutation	SNP	G	G	C			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	X	114426627	114426627	G	C	SNP	RBMXL3	ENST00000424776	human	ensembl	69_37n	+1	known	missense	c.2623	p.G875R	0.768	NULL	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	RBMXL3	HGNC	ENSG00000175718	37	0	0.00	30	6	16.67	-	-	-
SCAPER	0	genome.wustl.edu	37	15	76763568	76763568	+	Silent	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	15	76763568	76763568	C	T	SNP	SCAPER	ENST00000324767	human	ensembl	69_37n	-1	known	silent	c.3063	p.L1021	1.000	NULL	smart_Znf_U1	-	no_errors	SCAPER	HGNC	ENSG00000140386	58	0	0.00	120	19	13.67	-	-	-
TCF25	0	genome.wustl.edu	37	16	89977557	89977557	+	Missense_Mutation	SNP	G	G	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	16	89977557	89977557	G	T	SNP	TCF25	ENST00000263346	human	ensembl	69_37n	+1	known	missense	c.1942	p.A648S	1.000	NULL	pfam_TCF25	-	no_errors	TCF25	HGNC	ENSG00000141002	25	0	0.00	20	4	16.67	-	-	-
TNIK	0	genome.wustl.edu	37	3	170802027	170802027	+	Missense_Mutation	SNP	T	T	C			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	3	170802027	170802027	T	C	SNP	TNIK	ENST00000436636	human	ensembl	69_37n	-1	known	missense	c.3086	p.N1029S	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Citron,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_Citron,pfscan_Prot_kinase_cat_dom	-	no_errors	TNIK	HGNC	ENSG00000154310	110	1	0.89	258	65	20.00	-	-	-
TTN	0	genome.wustl.edu	37	2	179419393	179419393	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	179419393	179419393	C	T	SNP	TTN	ENST00000342992	human	ensembl	69_37n	-1	known	missense	c.80977	p.D26993N	1.000	pfam_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_Fibronectin_type3,superfamily_RNaseH-like_dom,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_Titin_Z,pfam_PPAK_motif,pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_Calpain_domain_III,superfamily_RNaseH-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	TTN	HGNC	ENSG00000155657	56	0	0.00	105	35	25.00	-	-	-
VPS13B	0	genome.wustl.edu	37	8	100479779	100479779	+	Missense_Mutation	SNP	A	A	G			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	8	100479779	100479779	A	G	SNP	VPS13B	ENST00000358544	human	ensembl	69_37n	+1	known	missense	c.3583	p.T1195A	0.006	NULL	pfam_Autophagy-rel_C	-	no_errors	VPS13B	HGNC	ENSG00000132549	47	0	0.00	111	25	18.38	-	-	-
XIRP2	0	genome.wustl.edu	37	2	168105004	168105004	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	2	168105004	168105004	C	T	SNP	XIRP2	ENST00000295237	human	ensembl	69_37n	+1	known	missense	c.7102	p.P2368S	0.997	NULL	pfam_Actin-binding_Xin_repeat,superfamily_FH2_actin-bd	-	no_errors	XIRP2	HGNC	ENSG00000163092	41	0	0.00	115	17	12.88	-	-	-
ZCCHC2	0	genome.wustl.edu	37	18	60241584	60241584	+	Missense_Mutation	SNP	C	C	T			TCGA-AR-A2LN-01A-21D-A18P-09	TCGA-AR-A2LN-10A-01D-A18P-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	50f62c87-7930-4d8a-add5-597baec8135d	9e056f5e-3cb0-41f2-8f05-c087737291ba	18	60241584	60241584	C	T	SNP	ZCCHC2	ENST00000269499	human	ensembl	69_37n	+1	known	missense	c.2270	p.A757V	0.394	NULL	pfam_Znf_CCHC,superfamily_Phox,superfamily_Znf_CCHC,smart_Znf_CCHC,pfscan_Znf_CCHC	-	no_errors	ZCCHC2	HGNC	ENSG00000141664	41	0	0.00	82	30	26.79	-	-	-
