Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ANKH	0	genome.wustl.edu	37	5	14716838	14716838	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	5	14716838	14716838	A	T	SNP	ANKH	ENST00000284268	human	ensembl	69_37n	-1	known	missense	c.1118	p.I373N	1.000	NULL	pfam_ANKH	-	no_errors	ANKH	HGNC	ENSG00000154122	80	0	0.00	82	16	16.00	-	-	-
ATAD5	0	genome.wustl.edu	37	17	29220890	29220890	+	Silent	SNP	T	T	C			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	29220890	29220890	T	C	SNP	ATAD5	ENST00000321990	human	ensembl	69_37n	+1	known	silent	c.5019	p.G1673	1.000	NULL	pfam_ATPase_AAA_core,smart_AAA+_ATPase	-	no_errors	ATAD5	HGNC	ENSG00000176208	292	0	0.00	187	42	18.34	-	-	-
C2CD4C	0	genome.wustl.edu	37	19	408200	408200	+	Silent	SNP	G	G	C			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	408200	408200	G	C	SNP	C2CD4C	ENST00000332235	human	ensembl	69_37n	-1	known	silent	c.162	p.P54	0.916	NULL	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	-	no_errors	C2CD4C	HGNC	ENSG00000183186	10	0	0.00	31	15	31.91	-	-	-
CAPN11	0	genome.wustl.edu	37	6	44150736	44150736	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	6	44150736	44150736	G	T	SNP	CAPN11	ENST00000398776	human	ensembl	69_37n	+1	known	missense	c.1997	p.R666L	0.995	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_Peptidase_C2_calpain_cat,pfam_Calpain_domain_III,superfamily_Calpain_domain_III,smart_Peptidase_C2_calpain_cat,smart_Calpain_III,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,pfscan_Peptidase_C2_calpain_cat,prints_Calpain_cysteine_protease	-	no_errors	CAPN11	HGNC	ENSG00000137225	47	0	0.00	120	23	15.97	-	-	-
CCR2	0	genome.wustl.edu	37	3	46399915	46399915	+	Silent	SNP	C	C	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	46399915	46399915	C	T	SNP	CCR2	ENST00000292301	human	ensembl	69_37n	+1	known	silent	c.897	p.C299	1.000	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn,prints_Chemokine_rcpt,prints_Chemokine_CCR2	-	no_errors	CCR2	HGNC	ENSG00000121807	82	0	0.00	93	35	27.34	-	-	-
CD1D	0	genome.wustl.edu	37	1	158150918	158150918	+	Silent	SNP	C	C	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	158150918	158150918	C	T	SNP	CD1D	ENST00000368171	human	ensembl	69_37n	+1	known	silent	c.27	p.L9	0.003	NULL	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1D	HGNC	ENSG00000158473	8	0	0.00	42	14	25.00	-	-	-
CHAF1A	0	genome.wustl.edu	37	19	4428843	4428843	+	Silent	SNP	C	C	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	4428843	4428843	C	T	SNP	CHAF1A	ENST00000301280	human	ensembl	69_37n	+1	known	silent	c.1560	p.S520	0.103	NULL	pfam_CAF1A,pfam_CAF-1_p150	-	no_errors	CHAF1A	HGNC	ENSG00000167670	18	0	0.00	23	13	36.11	-	-	-
EEF1A1	0	genome.wustl.edu	37	6	74228163	74228163	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	6	74228163	74228163	C	G	SNP	EEF1A1	ENST00000309268	human	ensembl	69_37n	-1	known	missense	c.943	p.V315L	1.000	pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_init/rib_B-barrel,tigrfam_Transl_elong_EF1A_euk/arc	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFTu/EF1A_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Transl_elong_EF1A/Init_IF2_C,superfamily_Transl_elong_init/rib_B-barrel,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EF1A_euk/arc	-	no_errors	EEF1A1	HGNC	ENSG00000156508	39	0	0.00	68	8	10.53	-	-	-
FAM157B	0	genome.wustl.edu	37	9	141107536	141107537	+	RNA	INS	-	-	GCA			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	9	141107536	141107537	-	GCA	INS	FAM157B	ENST00000446912	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.033:0.036	-	-	-	no_errors	FAM157B	HGNC	ENSG00000233013	28	0	0.00	68	8	10.53	-	-	-
FAM91A1	0	genome.wustl.edu	37	8	124796718	124796718	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	124796718	124796718	C	T	SNP	FAM91A1	ENST00000334705	human	ensembl	69_37n	+1	known	missense	c.712	p.L238F	1.000	NULL	NULL	-	no_errors	FAM91A1	HGNC	ENSG00000176853	298	0	0.00	83	45	35.16	-	-	-
FCGBP	0	genome.wustl.edu	37	19	40392719	40392719	+	Silent	SNP	G	G	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	19	40392719	40392719	G	A	SNP	FCGBP	ENST00000221347	human	ensembl	69_37n	-1	known	silent	c.7785	p.N2595	0.999	pfam_VWF_type-D,smart_VWF_type-D	pfam_VWF_type-D,pfam_Unchr_dom_Cys-rich,pfam_TIL_dom,superfamily_TIL_dom,smart_Fol_N,smart_VWF_type-D,smart_Unchr_dom_Cys-rich,smart_EGF-like,smart_VWF_C,smart_VWC_out	-	no_errors	FCGBP	HGNC	ENSG00000090920	8	0	0.00	40	19	32.20	-	-	-
FSTL5	0	genome.wustl.edu	37	4	162577518	162577518	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	4	162577518	162577518	T	C	SNP	FSTL5	ENST00000306100	human	ensembl	69_37n	-1	known	missense	c.856	p.N286D	0.978	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Kazal-type_dom,pfam_Ig_V-set,pfam_Prot_inh_Kazal,smart_Prot_inh_Kazal,smart_Ig_sub,smart_Ig_sub2,pfscan_EF_HAND_2,pfscan_Ig-like	-	no_errors	FSTL5	HGNC	ENSG00000168843	174	0	0.00	77	21	21.43	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	42	0	0	88	20	18.52	-	-	-
IKBKE	0	genome.wustl.edu	37	1	206648210	206648210	+	Silent	SNP	C	C	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	1	206648210	206648210	C	T	SNP	IKBKE	ENST00000367120	human	ensembl	69_37n	+1	known	silent	c.231	p.G77	0.995	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	IKBKE	HGNC	ENSG00000143466	26	0	0.00	118	35	22.73	-	-	-
KCTD10	0	genome.wustl.edu	37	12	109895450	109895450	+	Missense_Mutation	SNP	T	T	G			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	12	109895450	109895450	T	G	SNP	KCTD10	ENST00000228495	human	ensembl	69_37n	-1	known	missense	c.512	p.K171T	1.000	NULL	pfam_T1-type_BTB,pfam_BTB_POZ,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,pfscan_BTB/POZ-like	-	no_errors	KCTD10	HGNC	ENSG00000110906	291	1	0.34	353	118	25.05	-	-	-
MCM4	0	genome.wustl.edu	37	8	48882407	48882407	+	Silent	SNP	G	G	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	8	48882407	48882407	G	A	SNP	MCM4	ENST00000262105	human	ensembl	69_37n	+1	known	silent	c.1224	p.V408	0.995	superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase	pfam_MCM_DNA-dep_ATPase,pfam_Mg_chelatse_chII,pfam_ATPase_dyneun-rel_AAA,pfam_ATPase_AAA-3,superfamily_NA-bd_OB-fold-like,smart_MCM_DNA-dep_ATPase,pfscan_MCM_DNA-dep_ATPase,prints_MCM_4,prints_MCM_DNA-dep_ATPase	-	no_errors	MCM4	HGNC	ENSG00000104738	74	0	0.00	152	27	15.00	-	-	-
OR51V1	0	genome.wustl.edu	37	11	5221911	5221911	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	5221911	5221911	A	G	SNP	OR51V1	ENST00000321255	human	ensembl	69_37n	-1	known	missense	c.20	p.M7T	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51V1	HGNC	ENSG00000176742	55	0	0.00	59	18	23.38	-	-	-
PDE9A	0	genome.wustl.edu	37	21	44106372	44106372	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	21	44106372	44106372	G	A	SNP	PDE9A	ENST00000291539	human	ensembl	69_37n	+1	known	missense	c.140	p.R47Q	1.000	NULL	pfam_PDEase_catalytic_dom,smart_HD/PDEase_dom,prints_PDEase	-	no_errors	PDE9A	HGNC	ENSG00000160191	9	0	0.00	53	21	28.38	-	-	-
RABEPK	0	genome.wustl.edu	37	9	127994885	127994885	+	Silent	SNP	A	A	G			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	9	127994885	127994885	A	G	SNP	RABEPK	ENST00000373538	human	ensembl	69_37n	+1	known	silent	c.687	p.K229	0.887	pfam_Kelch_1	pfam_Kelch_2,pfam_Kelch_1	-	no_errors	RABEPK	HGNC	ENSG00000136933	23	0	0.00	56	25	30.86	-	-	-
SLFN13	0	genome.wustl.edu	37	17	33768827	33768827	+	Silent	SNP	G	G	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	33768827	33768827	G	A	SNP	SLFN13	ENST00000285013	human	ensembl	69_37n	-1	known	silent	c.1677	p.L559	0.279	NULL	pfam_ATPase_AAA-4,pfam_DUF2075	-	no_errors	SLFN13	HGNC	ENSG00000154760	10	0	0.00	7	4	36.36	-	-	-
TANC2	0	genome.wustl.edu	37	17	61489359	61489359	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	17	61489359	61489359	G	A	SNP	TANC2	ENST00000583356	human	ensembl	69_37n	+1	putative	nonsense	c.3330	p.W1110*	1.000	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_TPR_repeat,pfscan_TPR-contain_dom,prints_Ankyrin_rpt	-	pseudogene:no_stop_codon:bad_bp_length_for_coding_region	TANC2	HGNC	ENSG00000170921	50	0	0.00	84	28	25.00	-	-	-
WDR74	0	genome.wustl.edu	37	11	62603453	62603453	+	Nonsense_Mutation	SNP	T	T	A			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	11	62603453	62603453	T	A	SNP	WDR74	ENST00000278856	human	ensembl	69_37n	-1	known	nonsense	c.349	p.K117*	0.358	superfamily_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	-	no_errors	WDR74	HGNC	ENSG00000133316	76	0	0.00	154	44	22.22	-	-	-
ZDHHC3	0	genome.wustl.edu	37	3	44970893	44970893	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0WS-01A-11D-A10Y-09	TCGA-B6-A0WS-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	271d1985-1b15-4828-8261-4415ab048de9	ad236498-9d88-4caf-afd9-4d7f068ceaa3	3	44970893	44970893	G	T	SNP	ZDHHC3	ENST00000296127	human	ensembl	69_37n	-1	known	missense	c.730	p.L244I	1.000	NULL	pfam_Znf_DHHC_palmitoyltrfase,pfscan_Znf_DHHC_palmitoyltrfase	-	no_errors	ZDHHC3	HGNC	ENSG00000163812	53	0	0.00	93	25	21.19	-	-	-
