Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALG10	0	genome.wustl.edu	37	12	34177061	34177061	+	Nonsense_Mutation	SNP	T	T	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	34177061	34177061	T	G	SNP	ALG10	ENST00000266483	human	ensembl	69_37n	+1	known	nonsense	c.336	p.Y112*	0.999	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	pfam_Glycosyltransferase_ALG10,pirsf_Alpha1_2_glucosyltferase_Alg10	-	no_errors	ALG10	HGNC	ENSG00000139133	395	0	0.00	191	78	29.00	-	-	-
APC	0	genome.wustl.edu	37	5	112177345	112177345	+	Silent	SNP	A	A	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	112177345	112177345	A	G	SNP	APC	ENST00000257430	human	ensembl	69_37n	+1	known	silent	c.6054	p.P2018	0.325	pfam_APC_Cys-rich_rpt	pfam_APC_basic_dom,pfam_EB1-bd,pfam_APC_Cys-rich_rpt,pfam_Armadillo,pfam_SAMP,pfam_APC_15aa_rpt,superfamily_ARM-type_fold,smart_Armadillo,pfscan_Armadillo	-	no_errors	APC	HGNC	ENSG00000134982	115	0	0.00	57	36	38.71	-	-	-
ARID1B	0	genome.wustl.edu	37	6	157454190	157454190	+	Frame_Shift_Del	DEL	T	T	-			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	6	157454190	157454190	T	-	DEL	ARID1B	ENST00000367148	human	ensembl	69_37n	+1	known	frame_shift_del	c.2361	p.Q788fs	0.997	NULL	pfam_DUF3518,pfam_ARID/BRIGHT_DNA-bd,superfamily_ARID/BRIGHT_DNA-bd,superfamily_ARM-type_fold,smart_ARID/BRIGHT_DNA-bd,pfscan_ARID/BRIGHT_DNA-bd	-	no_errors	ARID1B	HGNC	ENSG00000049618	73	0	0.00	31	22	40.74	-	-	-
COL14A1	0	genome.wustl.edu	37	8	121282319	121282319	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	8	121282319	121282319	C	T	SNP	COL14A1	ENST00000297848	human	ensembl	69_37n	+1	known	missense	c.3119	p.S1040F	1.000	pfam_VWF_A,smart_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfam_Fibronectin_type3,pfam_Collagen,superfamily_ConA-like_lec_gl,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_VWF_A,smart_Laminin_G,pfscan_Fibronectin_type3,pfscan_VWF_A	-	no_errors	COL14A1	HGNC	ENSG00000187955	176	0	0.00	119	55	31.61	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16946437	16946437	+	RNA	SNP	C	C	T			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	1	16946437	16946437	C	T	SNP	CROCCP2	ENST00000412962	human	ensembl	69_37n	-1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	16	0	0.00	28	7	20.00	-	-	-
ENTPD5	0	genome.wustl.edu	37	14	74436746	74436746	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	74436746	74436746	A	G	SNP	ENTPD5	ENST00000555829	human	ensembl	69_37n	-1	putative	missense	c.191	p.M64T	0.756	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ENTPD5	HGNC	ENSG00000187097	67	0	0.00	59	28	32.18	-	-	-
ESR2	0	genome.wustl.edu	37	14	64694310	64694310	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	14	64694310	64694310	G	C	SNP	ESR2	ENST00000353772	human	ensembl	69_37n	-1	known	missense	c.1429	p.L477V	0.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Estrogen_rcpt_beta_N,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,pfscan_Znf_hrmn_rcpt,prints_Str_hrmn_rcpt,prints_Znf_hrmn_rcpt	-	no_errors	ESR2	HGNC	ENSG00000140009	97	0	0.00	59	32	35.16	-	-	-
EXOC7	0	genome.wustl.edu	37	17	74084953	74084953	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	17	74084953	74084953	G	A	SNP	EXOC7	ENST00000335146	human	ensembl	69_37n	-1	known	missense	c.1252	p.R418W	1.000	pfam_Exo70,superfamily_Cullin_repeat-like_dom	pfam_Exo70,superfamily_Cullin_repeat-like_dom	-	no_errors	EXOC7	HGNC	ENSG00000182473	10	0	0.00	23	8	25.81	-	-	-
GCC2	0	genome.wustl.edu	37	2	109099566	109099566	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	109099566	109099566	C	A	SNP	GCC2	ENST00000309863	human	ensembl	69_37n	+1	known	missense	c.3394	p.Q1132K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,smart_GRIP,pfscan_GRIP	-	no_errors	GCC2	HGNC	ENSG00000135968	180	0	0.00	71	37	34.26	-	-	-
GOLGA6L5	0	genome.wustl.edu	37	15	85053188	85053188	+	RNA	SNP	C	C	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	15	85053188	85053188	C	G	SNP	GOLGA6L5	ENST00000414190	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.002	-	-	-	no_errors	GOLGA6L5	HGNC	ENSG00000230373	8	0	0.00	21	13	38.24	-	-	-
IFRD1	0	genome.wustl.edu	37	7	112112289	112112289	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	112112289	112112289	A	G	SNP	IFRD1	ENST00000005558	human	ensembl	69_37n	+1	known	missense	c.1057	p.T353A	1.000	NULL	pfam_Interferon-rel_develop_reg_N,pfam_Interferon-rel_develop_reg_C,superfamily_ARM-type_fold	-	no_errors	IFRD1	HGNC	ENSG00000006652	195	0	0.00	90	55	37.93	-	-	-
ITGB3BP	0	genome.wustl.edu	37	1	63955841	63955841	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	1	63955841	63955841	A	T	SNP	ITGB3BP	ENST00000371092	human	ensembl	69_37n	-1	known	missense	c.214	p.S72T	0.981	NULL	pfam_NRIF3_coact_rcpt	-	no_errors	ITGB3BP	HGNC	ENSG00000142856	278	0	0.00	111	49	30.63	-	-	-
LRP4	0	genome.wustl.edu	37	11	46916348	46916348	+	Silent	SNP	G	G	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	46916348	46916348	G	A	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	silent	c.1332	p.F444	1.000	superfamily_Growth_fac_rcpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	23	0	0.00	41	35	46.05	-	-	-
N4BP3	0	genome.wustl.edu	37	5	177548592	177548592	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	5	177548592	177548592	C	T	SNP	N4BP3	ENST00000274605	human	ensembl	69_37n	+1	known	missense	c.1225	p.R409W	1.000	pfam_Fez1	pfam_Fez1	-	no_errors	N4BP3	HGNC	ENSG00000145911	10	0	0.00	14	12	46.15	-	-	-
NSUN5	0	genome.wustl.edu	37	7	72718330	72718330	+	Silent	SNP	A	A	G			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	7	72718330	72718330	A	G	SNP	NSUN5	ENST00000438747	human	ensembl	69_37n	-1	known	silent	c.831	p.S277	0.005	pfam_Fmu/NOL1/Nop2p	pfam_Fmu/NOL1/Nop2p,prints_RCMT	-	no_errors	NSUN5	HGNC	ENSG00000130305	11	0	0.00	27	8	22.86	-	-	-
OR5W2	0	genome.wustl.edu	37	11	55681318	55681318	+	Silent	SNP	C	C	T			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	11	55681318	55681318	C	T	SNP	OR5W2	ENST00000344514	human	ensembl	69_37n	-1	known	silent	c.741	p.A247	0.003	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5W2	HGNC	ENSG00000187612	122	0	0.00	74	45	37.82	-	-	-
PLCD1	0	genome.wustl.edu	37	3	38061760	38061760	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	3	38061760	38061760	G	A	SNP	PLCD1	ENST00000463876	human	ensembl	69_37n	-1	known	missense	c.181	p.R61C	0.965	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD1	HGNC	ENSG00000187091	17	0	0.00	31	14	31.11	-	-	-
RHEBL1	0	genome.wustl.edu	37	12	49459216	49459216	+	Splice_Site	SNP	T	T	C			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	12	49459216	49459216	T	C	SNP	RHEBL1	ENST00000301068	human	ensembl	69_37n	-1	known	splice_site	c.381-2	e7-2	0.997	-	-	-	no_errors	RHEBL1	HGNC	ENSG00000167550	27	0	0.00	38	32	45.71	-	-	-
SF3B1	0	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	57	0	0.00	28	15	34.88	-	-	-
SLFN14	0	genome.wustl.edu	37	17	33884703	33884703	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	17	33884703	33884703	G	A	SNP	SLFN14	ENST00000415846	human	ensembl	69_37n	-1	known	missense	c.379	p.R127C	0.794	NULL	pfam_ATPase_AAA-4	-	no_errors	SLFN14	HGNC	ENSG00000236320	51	0	0.00	47	16	25.40	-	-	-
SUPT5H	0	genome.wustl.edu	37	19	39949655	39949655	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0WT-01A-11D-A10G-09	TCGA-B6-A0WT-10A-01D-A10G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	5fb780fb-12bc-4195-8f0c-2c6e3cc36b49	e31846e7-c2f6-4f0c-9240-dbbc9cbb795b	19	39949655	39949655	G	A	SNP	SUPT5H	ENST00000359191	human	ensembl	69_37n	+1	known	missense	c.400	p.E134K	1.000	pfam_Spt5_N,pirsf_TF_Spt5	pfam_TF_Spt5_NGN-domain,pfam_KOW,pfam_Spt5_N,superfamily_Translation_prot_SH3-like,smart_Transcrpt_antiterm_NusG_N,smart_KOW,pirsf_TF_Spt5	-	no_errors	SUPT5H	HGNC	ENSG00000196235	35	0	0.00	50	9	15.25	-	-	-
