Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALAS2	0	genome.wustl.edu	37	X	55042138	55042138	+	Silent	SNP	G	G	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	55042138	55042138	G	T	SNP	ALAS2	ENST00000330807	human	ensembl	69_37n	-1	known	silent	c.1041	p.S347	0.990	pfam_Aminotransferase_I/II,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	pfam_Aminotransferase_I/II,pfam_5aminolev_synth_preseq,pfam_Aminotrans_V/Cys_dSase,pfam_Cys/Met-Metab_PyrdxlP-dep_enz,superfamily_PyrdxlP-dep_Trfase_major_dom,tigrfam_4pyrrol_synth_NH2levulA_synth	-	no_errors	ALAS2	HGNC	ENSG00000158578	97	0	0.00	84	35	29.41	-	-	-
ASMTL	0	genome.wustl.edu	37	X	1522276	1522276	+	Silent	SNP	C	C	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	1522276	1522276	C	T	SNP	ASMTL	ENST00000381317	human	ensembl	69_37n	-1	known	silent	c.1752	p.E584	0.991	pfam_O_MeTrfase_2	pfam_Maf,pfam_O_MeTrfase_2,tigrfam_Maf	-	no_errors	ASMTL	HGNC	ENSG00000169093	93	0	0.00	67	37	35.58	-	-	-
CALM2	0	genome.wustl.edu	37	2	47403600	47403600	+	Missense_Mutation	SNP	T	T	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	47403600	47403600	T	A	SNP	CALM2	ENST00000456319	human	ensembl	69_37n	-1	putative	missense	c.51	p.K17N	0.994	NULL	pfam_EF-hand,pfam_EF-hand_Ca_insen,smart_EF_hand_Ca-bd,pfscan_EF_HAND_2,prints_Recoverin	-	no_start_codon	CALM2	HGNC	ENSG00000143933	70	0	0.00	41	28	40.58	-	-	-
CDH6	0	genome.wustl.edu	37	5	31294263	31294263	+	Silent	SNP	C	C	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	5	31294263	31294263	C	T	SNP	CDH6	ENST00000265071	human	ensembl	69_37n	+1	known	silent	c.423	p.P141	0.039	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH6	HGNC	ENSG00000113361	60	0	0.00	53	41	43.62	-	-	-
FBN3	0	genome.wustl.edu	37	19	8191626	8191626	+	Missense_Mutation	SNP	C	C	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	19	8191626	8191626	C	T	SNP	FBN3	ENST00000270509	human	ensembl	69_37n	-1	known	missense	c.2387	p.R796Q	0.996	pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pirsf_Fibrillin,pfscan_EG-like_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,pfam_EGF-like_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_Fibrillin,pfscan_EG-like_dom	-	no_errors	FBN3	HGNC	ENSG00000142449	32	0	0.00	21	15	41.67	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29632643	29632643	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	20	29632643	29632643	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	69_37n	+1	known	missense	c.458	p.L153P	1.000	pfam_FRG1	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531	29	0	0.00	61	10	14.08	-	-	-
FRMPD4	0	genome.wustl.edu	37	X	12722503	12722503	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	12722503	12722503	C	A	SNP	FRMPD4	ENST00000380682	human	ensembl	69_37n	+1	known	missense	c.1096	p.L366I	1.000	pfam_FERM_central,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain	pfam_FERM_central,pfam_PDZ,superfamily_FERM_central,superfamily_PDZ,smart_PDZ,smart_Band_41_domain,pfscan_FERM_domain,pfscan_PDZ,pfscan_WW_Rsp5_WWP	-	no_errors	FRMPD4	HGNC	ENSG00000169933	138	0	0.00	102	68	40.00	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	110	0	0	106	34	24.11	-	-	-
GOLGA8J	0	genome.wustl.edu	37	15	30382467	30382467	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	15	30382467	30382467	A	G	SNP	GOLGA8J	ENST00000341650	human	ensembl	69_37n	+1	known	missense	c.623	p.Q208R	0.998	NULL	NULL	-	no_errors	GOLGA8J	HGNC	ENSG00000179938	42	0	0.00	49	23	31.94	-	-	-
GPRIN2	0	genome.wustl.edu	37	10	46998995	46998995	+	Missense_Mutation	SNP	C	C	G			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	46998995	46998995	C	G	SNP	GPRIN2	ENST00000374314	human	ensembl	69_37n	+1	known	missense	c.115	p.L39V	0.989	NULL	NULL	-	no_errors	GPRIN2	HGNC	ENSG00000204175	13	0	0.00	12	6	33.33	-	-	-
ITGB3	0	genome.wustl.edu	37	17	45367609	45367609	+	Missense_Mutation	SNP	A	A	G			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	45367609	45367609	A	G	SNP	ITGB3	ENST00000262017	human	ensembl	69_37n	+1	known	missense	c.1094	p.N365S	1.000	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,smart_Integrin_bsu_N,prints_Integrin_bsu	pirsf_Integrin_bsu,pfam_Integrin_bsu_N,pfam_Integrin_bsu_cyt,pfam_Integrin_bsu_tail,pfam_EGF_extracell,superfamily_Integrin_bsu_tail,superfamily_Plexin-like_fold,smart_Plexin-like,smart_Integrin_bsu_N,prints_Integrin_bsu	-	no_errors	ITGB3	HGNC	ENSG00000259207	341	0	0.00	237	135	36.29	-	-	-
LCP1	0	genome.wustl.edu	37	13	46732779	46732779	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	13	46732779	46732779	T	C	SNP	LCP1	ENST00000323076	human	ensembl	69_37n	-1	known	missense	c.236	p.H79R	1.000	smart_EF_hand_Ca-bd,pfscan_EF_HAND_2	pfam_CH-domain,pfam_EF-hand,pfam_CAMSAP_CH,superfamily_CH-domain,smart_EF_hand_Ca-bd,smart_CH-domain,pfscan_CH-domain,pfscan_EF_HAND_2	-	no_errors	LCP1	HGNC	ENSG00000136167	168	0	0.00	157	76	32.62	-	-	-
LRP2	0	genome.wustl.edu	37	2	170135997	170135997	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	170135997	170135997	C	A	SNP	LRP2	ENST00000263816	human	ensembl	69_37n	-1	known	missense	c.1450	p.V484L	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,superfamily_TIL_dom,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP2	HGNC	ENSG00000081479	80	0	0.00	75	37	33.04	-	-	-
MYO18A	0	genome.wustl.edu	37	17	27445423	27445423	+	Missense_Mutation	SNP	T	T	C			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	17	27445423	27445423	T	C	SNP	MYO18A	ENST00000354329	human	ensembl	69_37n	-1	known	missense	c.1865	p.N622S	0.999	pfam_Myosin_head_motor_dom,smart_Myosin_head_motor_dom	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_PDZ,superfamily_PDZ,superfamily_Regulat_G_prot_signal_superfam,smart_PDZ,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS,pfscan_PDZ,pfscan_RecA_monomer-monomer_interface,prints_Myosin_head_motor_dom	-	no_errors	MYO18A	HGNC	ENSG00000196535	142	0	0.00	113	42	27.10	-	-	-
MYPN	0	genome.wustl.edu	37	10	69961611	69961611	+	Silent	SNP	G	G	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	10	69961611	69961611	G	T	SNP	MYPN	ENST00000358913	human	ensembl	69_37n	+1	known	silent	c.3519	p.V1173	1.000	pfam_Ig_I-set,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MYPN	HGNC	ENSG00000138347	36	0	0.00	42	23	35.38	-	-	-
NOTCH2	0	genome.wustl.edu	37	1	120465265	120465265	+	Missense_Mutation	SNP	C	C	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	1	120465265	120465265	C	A	SNP	NOTCH2	ENST00000256646	human	ensembl	69_37n	-1	known	missense	c.4996	p.V1666F	0.999	pirsf_Notch,pfam_Notch_NODP_dom,prints_Notch_2	pirsf_Notch,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,pfam_Ankyrin_rpt,pfam_Notch_NOD_dom,pfam_DUF3454_notch,pfam_Notch_NODP_dom,pfam_EGF_extracell,superfamily_Ankyrin_rpt-contain_dom,superfamily_Notch_dom,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Notch_dom,smart_Ankyrin_rpt,prints_Notch_2,prints_Notch_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_EG-like_dom,pfscan_Notch_dom	-	no_errors	NOTCH2	HGNC	ENSG00000134250	117	0	0.00	87	51	36.96	-	-	-
PCDH19	0	genome.wustl.edu	37	X	99663130	99663130	+	Missense_Mutation	SNP	G	G	C			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	X	99663130	99663130	G	C	SNP	PCDH19	ENST00000373034	human	ensembl	69_37n	-1	known	missense	c.466	p.P156A	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	PCDH19	HGNC	ENSG00000165194	85	0	0.00	45	24	34.29	-	-	-
PHF20	0	genome.wustl.edu	37	20	34519315	34519315	+	Missense_Mutation	SNP	A	A	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	20	34519315	34519315	A	T	SNP	PHF20	ENST00000374012	human	ensembl	69_37n	+1	known	missense	c.2249	p.Q750L	1.000	NULL	pfam_DUF3776,pfam_Znf_PHD-finger,superfamily_Znf_FYVE_PHD,smart_Tudor,smart_Znf_PHD,pfscan_Znf_C2H2	-	no_errors	PHF20	HGNC	ENSG00000025293	96	0	0.00	69	29	29.59	-	-	-
SEH1L	0	genome.wustl.edu	37	18	12971157	12971157	+	Missense_Mutation	SNP	G	G	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	18	12971157	12971157	G	A	SNP	SEH1L	ENST00000399892	human	ensembl	69_37n	+1	known	missense	c.527	p.R176H	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	SEH1L	HGNC	ENSG00000085415	131	0	0.00	117	70	37.43	-	-	-
SH3D19	0	genome.wustl.edu	37	4	152096472	152096472	+	Missense_Mutation	SNP	G	G	T			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	4	152096472	152096472	G	T	SNP	SH3D19	ENST00000304527	human	ensembl	69_37n	-1	known	missense	c.44	p.S15Y	1.000	NULL	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,prints_p67phox,prints_SH3_domain,pfscan_SH3_domain	-	no_errors	SH3D19	HGNC	ENSG00000109686	119	1	0.83	99	55	35.71	-	-	-
STAT4	0	genome.wustl.edu	37	2	191922752	191922752	+	Nonsense_Mutation	SNP	G	G	A			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	2	191922752	191922752	G	A	SNP	STAT4	ENST00000358470	human	ensembl	69_37n	-1	known	nonsense	c.1198	p.R400*	1.000	pfam_STAT_TF_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_STAT_TF_DNA-bd,pfam_STAT_TF_alpha,pfam_STAT_TF_prot_interaction,pfam_SH2,superfamily_p53-like_TF_DNA-bd,superfamily_STAT_TF_coiled-coil,superfamily_STAT_TF_prot_interaction,smart_STAT_TF_prot_interaction,pfscan_SH2	-	no_errors	STAT4	HGNC	ENSG00000138378	73	0	0.00	98	37	27.21	-	-	-
ZNF804B	0	genome.wustl.edu	37	7	88964843	88964843	+	Silent	SNP	T	T	C			TCGA-B6-A0X0-01A-21D-A10Y-09	TCGA-B6-A0X0-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	264fb6ef-65be-48fd-8216-6c493b620ad8	daa07354-8687-4350-9d9c-d95db1a71517	7	88964843	88964843	T	C	SNP	ZNF804B	ENST00000333190	human	ensembl	69_37n	+1	known	silent	c.2547	p.T849	0.000	NULL	pfam_Znf_C2H2_jaz	-	no_errors	ZNF804B	HGNC	ENSG00000182348	29	0	0.00	24	7	22.58	-	-	-
