Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AMELX	0	genome.wustl.edu	37	X	11316986	11316986	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	11316986	11316986	C	T	SNP	AMELX	ENST00000380712	human	ensembl	69_37n	+1	known	nonsense	c.505	p.Q169*	1.000	pfam_Amelogenin,smart_Amelogenin	pfam_Amelogenin,smart_Amelogenin,prints_Amelogenin	-	no_errors	AMELX	HGNC	ENSG00000125363	137	0	0.00	171	43	20.09	-	-	-
EPG5	0	genome.wustl.edu	37	18	43534880	43534880	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	18	43534880	43534880	G	A	SNP	EPG5	ENST00000282041	human	ensembl	69_37n	-1	known	missense	c.488	p.T163I	0.011	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	168	0	0.00	168	39	18.84	-	-	-
GOLGA8A	0	genome.wustl.edu	37	15	34677517	34677517	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	15	34677517	34677517	G	A	SNP	GOLGA8A	ENST00000432566	human	ensembl	69_37n	-1	known	missense	c.485	p.T162I	0.001	NULL	NULL	-	no_errors	GOLGA8A	HGNC	ENSG00000175265	8	0	0.00	5	4	44.44	-	-	-
HNRNPR	0	genome.wustl.edu	37	1	23650213	23650213	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	23650213	23650213	T	G	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.511	p.K171Q	1.000	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	165	0	0.00	145	28	16.18	-	-	-
IGF1R	0	genome.wustl.edu	37	15	99456511	99456511	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	15	99456511	99456511	G	A	SNP	IGF1R	ENST00000268035	human	ensembl	69_37n	+1	known	missense	c.1828	p.V610I	1.000	pirsf_Tyr_kinase_insulin-like_rcpt,superfamily_Fibronectin_type3	pirsf_Tyr_kinase_insulin-like_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_EGF_rcpt_L,pfam_Prot_kinase_cat_dom,pfam_Furin-like_Cys-rich_dom,pfam_Fibronectin_type3,superfamily_Kinase-like_dom,superfamily_Growth_fac_rcpt,superfamily_Fibronectin_type3,smart_Furin_repeat,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	IGF1R	HGNC	ENSG00000140443	36	0	0.00	47	9	16.07	-	-	-
ITPR1	0	genome.wustl.edu	37	3	4856841	4856841	+	Silent	SNP	T	T	C			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	3	4856841	4856841	T	C	SNP	ITPR1	ENST00000302640	human	ensembl	69_37n	+1	known	silent	c.7761	p.A2587	0.047	NULL	pfam_Ca-rel_channel,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,smart_MIR_motif,prints_InsP3_rcpt-bd,pfscan_MIR_motif	-	no_errors	ITPR1	HGNC	ENSG00000150995	307	0	0.00	282	70	19.89	-	-	-
KIRREL	0	genome.wustl.edu	37	1	158059318	158059318	+	Silent	SNP	G	G	T			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	158059318	158059318	G	T	SNP	KIRREL	ENST00000368173	human	ensembl	69_37n	+1	known	silent	c.1119	p.L373	0.993	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_CD80_C2-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	KIRREL	HGNC	ENSG00000183853	25	0	0.00	45	13	22.41	-	-	-
NHS	0	genome.wustl.edu	37	X	17745442	17745443	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	X	17745442	17745443	TA	-	DEL	NHS	ENST00000380060	human	ensembl	69_37n	+1	known	frame_shift_del	c.3153_3154	p.S1053fs	0.007:0.000	NULL	NULL	-	no_errors	NHS	HGNC	ENSG00000188158	324	0	0.00	378	75	16.52	-	-	-
POLI	0	genome.wustl.edu	37	18	51795960	51795960	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	18	51795960	51795960	A	G	SNP	POLI	ENST00000579534	human	ensembl	69_37n	+1	known	missense	c.44	p.D15G	0.000	NULL	pfam_DNA_repair_prot_UmuC-like,pfam_DNA_pol_Y-fam_little_finger,superfamily_DNA_pol_Y-fam_little_finger,pfscan_DNA_repair_prot_UmuC-like_N	-	no_errors	POLI	HGNC	ENSG00000101751	9	0	0.00	10	5	33.33	-	-	-
RPS6KA2	0	genome.wustl.edu	37	6	166912078	166912078	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	6	166912078	166912078	G	A	SNP	RPS6KA2	ENST00000510118	human	ensembl	69_37n	-1	known	missense	c.740	p.T247M	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Ribosomal_S6_kinase_II,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Pkinase_C,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pirsf_Ribosomal_S6_kinase_II,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	RPS6KA2	HGNC	ENSG00000071242	45	0	0.00	48	17	26.15	-	-	-
RUNX1	0	genome.wustl.edu	37	21	36231791	36231791	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	21	36231791	36231791	T	C	SNP	RUNX1	ENST00000300305	human	ensembl	69_37n	-1	known	missense	c.593	p.D198G	1.000	pfam_AML1/Runt_N,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	pfam_AML1/Runt_N,pfam_RunxI,superfamily_p53-like_TF_DNA-bd,pirsf_TF_Runt-rel_RUNX,pfscan_AML1/Runt_N,prints_AML1_Runt	-	no_errors	RUNX1	HGNC	ENSG00000159216	434	1	0.23	485	116	19.27	-	-	-
TNFRSF10C	0	genome.wustl.edu	37	8	22973124	22973124	+	Silent	SNP	T	T	C			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	8	22973124	22973124	T	C	SNP	TNFRSF10C	ENST00000356864	human	ensembl	69_37n	+1	known	silent	c.384	p.C128	0.000	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10,pfscan_TNFR/NGFR_Cys_rich_reg	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_10,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF10C	HGNC	ENSG00000173535	71	0	0.00	106	20	15.87	-	-	-
TP53	0	genome.wustl.edu	37	17	7578371	7578371	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	17	7578371	7578371	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.559	p.G187S	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	63	0	0.00	57	18	24.00	-	-	-
UCK2	0	genome.wustl.edu	37	1	165872480	165872480	+	Silent	SNP	G	G	C			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	1	165872480	165872480	G	C	SNP	UCK2	ENST00000367879	human	ensembl	69_37n	+1	known	silent	c.561	p.T187	0.000	pfam_PRK/URK,tigrfam_Uridine_kinase	pfam_PRK/URK,pfam_Depp_CoAkinase,prints_Uridine_kinase,prints_PRK,tigrfam_Uridine_kinase	-	no_errors	UCK2	HGNC	ENSG00000143179	389	1	0.26	565	121	17.64	-	-	-
ZNF462	0	genome.wustl.edu	37	9	109771874	109771874	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0C3-01A-21D-A12Q-09	TCGA-BH-A0C3-11A-23D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	ec57ee0f-949e-4eee-91c2-dd129d657065	128e802b-64d9-42d9-8a22-59c8ce061eb4	9	109771874	109771874	G	A	SNP	ZNF462	ENST00000457913	human	ensembl	69_37n	+1	known	missense	c.7418	p.R2473H	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF462	HGNC	ENSG00000148143	289	0	0.00	254	70	21.60	-	-	-
