Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALOX12	0	genome.wustl.edu	37	17	6900318	6900318	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	6900318	6900318	G	C	SNP	ALOX12	ENST00000251535	human	ensembl	69_37n	+1	known	missense	c.309	p.E103D	0.010	pfam_LipOase_LH2,superfamily_Lipase_LipOase,smart_LipOase_LH2,pfscan_LipOase_LH2	pfam_LipOase_C,pfam_LipOase_LH2,superfamily_LipOase_C,superfamily_Lipase_LipOase,smart_LipOase_LH2,prints_LipOase_mml,prints_LipOase_C,pfscan_LipOase_LH2	-	no_errors	ALOX12	HGNC	ENSG00000108839	16	0	0.00	17	7	28.00	-	-	-
AUTS2	0	genome.wustl.edu	37	7	70252221	70252221	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	70252221	70252221	G	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	+1	known	missense	c.2335	p.D779Y	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	59	0	0.00	30	20	39.22	-	-	-
AUTS2	0	genome.wustl.edu	37	7	70252221	70252221	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	7	70252221	70252221	G	T	SNP	AUTS2	ENST00000342771	human	ensembl	69_37n	+1	known	missense	c.2335	p.D779Y	1.000	NULL	prints_AUTS2	-	no_errors	AUTS2	HGNC	ENSG00000158321	62	0	0.00	30	20	39.22	-	-	-
CBX2	0	genome.wustl.edu	37	17	77758181	77758181	+	Silent	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77758181	77758181	C	T	SNP	CBX2	ENST00000310942	human	ensembl	69_37n	+1	known	silent	c.939	p.S313	0.013	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX2	HGNC	ENSG00000173894	40	0	0.00	13	14	51.85	-	-	-
CBX8	0	genome.wustl.edu	37	17	77768660	77768660	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	77768660	77768660	C	T	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.944	p.S315N	0.060	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	27	0	0.00	13	14	51.85	-	-	-
CBX8	0	genome.wustl.edu	37	17	77768660	77768660	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	17	77768660	77768660	C	T	SNP	CBX8	ENST00000269385	human	ensembl	69_37n	-1	known	missense	c.944	p.S315N	0.060	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow	-	no_errors	CBX8	HGNC	ENSG00000141570	19	0	0.00	13	14	51.85	-	-	-
CERKL	0	genome.wustl.edu	37	2	182438569	182438569	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	182438569	182438569	G	T	SNP	CERKL	ENST00000339098	human	ensembl	69_37n	-1	known	missense	c.524	p.P175H	1.000	pfam_Diacylglycerol_kinase_cat_dom	pfam_Diacylglycerol_kinase_cat_dom	-	no_errors	CERKL	HGNC	ENSG00000188452	273	0	0.00	112	67	37.22	-	-	-
CTCF	0	genome.wustl.edu	37	16	67645922	67645922	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	16	67645922	67645922	C	A	SNP	CTCF	ENST00000264010	human	ensembl	69_37n	+1	known	missense	c.850	p.H284N	1.000	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	CTCF	HGNC	ENSG00000102974	112	0	0.00	28	37	56.92	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11597194	11597194	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	11597194	11597194	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	missense	c.4624	p.R1542G	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	82	0	0.00	59	21	26.25	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11597194	11597194	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	17	11597194	11597194	A	G	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	missense	c.4624	p.R1542G	1.000	pfam_Dynein_heavy_dom-2	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	137	1	0.72	59	21	26.25	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	2819	2819	+	RNA	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	MT	2819	2819	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	69_37n	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.4	Clone_based_ensembl_gene	ENSG00000210082	10	0	0.00	22	71	76.34	-	-	-
ENSG00000210082	0	genome.wustl.edu	37	MT	2819	2819	+	RNA	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	MT	2819	2819	G	A	SNP	ENSG00000210082	ENST00000387347	human	ensembl	69_37n	+1	known	rna	NULL	NULL	NULL	-	-	-	no_errors	J01415.4	Clone_based_ensembl_gene	ENSG00000210082	18	0	0.00	22	71	76.34	-	-	-
ENSG00000246477	0	genome.wustl.edu	37	8	11177526	11177526	+	RNA	DEL	T	T	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	8	11177526	11177526	T	-	DEL	ENSG00000246477	ENST00000498997	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.005	-	-	-	no_errors	AF131216.6	Clone_based_vega_gene	ENSG00000246477	23	0	0.00	26	4	13.33	-	-	-
FAM86B2	0	genome.wustl.edu	37	8	12285132	12285132	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	8	12285132	12285132	C	G	SNP	FAM86B2	ENST00000393715	human	ensembl	69_37n	-1	known	missense	c.242	p.C81S	0.001	NULL	NULL	-	no_errors	FAM86B2	HGNC	ENSG00000145002	15	0	0.00	17	5	22.73	-	-	-
FAT4	0	genome.wustl.edu	37	4	126239428	126239428	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	126239428	126239428	C	T	SNP	FAT4	ENST00000394329	human	ensembl	69_37n	+1	known	missense	c.1862	p.S621F	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Laminin_G,pfam_EGF-like_dom,pfam_EGF-like_Ca-bd,superfamily_Cadherin-like,superfamily_ConA-like_lec_gl,smart_Cadherin,smart_EGF-like,smart_EGF-like_Ca-bd,smart_Laminin_G,pfscan_EG-like_dom,pfscan_Laminin_G,pfscan_Cadherin,prints_Cadherin	-	no_errors	FAT4	HGNC	ENSG00000196159	59	0	0.00	49	23	31.94	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29632643	29632643	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	20	29632643	29632643	T	C	SNP	FRG1B	ENST00000278882	human	ensembl	69_37n	+1	known	missense	c.458	p.L153P	1.000	pfam_FRG1	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531	24	0	0.00	67	10	12.99	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685144	23685144	+	Silent	SNP	T	T	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	15	23685144	23685144	T	C	SNP	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	silent	c.2478	p.G826	0.003	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	9	0	0.00	6	6	50.00	-	-	-
GPR50	0	genome.wustl.edu	37	X	150349192	150349192	+	Silent	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	150349192	150349192	C	T	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	+1	known	silent	c.1137	p.P379	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	114	0	0.00	90	47	34.31	-	-	-
GPR50	0	genome.wustl.edu	37	X	150349192	150349192	+	Silent	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	X	150349192	150349192	C	T	SNP	GPR50	ENST00000218316	human	ensembl	69_37n	+1	known	silent	c.1137	p.P379	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Mel_rcpt_1X,prints_7TM_GPCR_Rhodpsn,prints_Melatonin_rcpt,prints_NPY_rcpt	-	no_errors	GPR50	HGNC	ENSG00000102195	156	0	0.00	90	47	34.31	-	-	-
HECW1	0	genome.wustl.edu	37	7	43548644	43548645	+	Frame_Shift_Del	DEL	TT	TT	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	TT	TT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	43548644	43548645	TT	-	DEL	HECW1	ENST00000395891	human	ensembl	69_37n	+1	known	frame_shift_del	c.3943_3944	p.F1315fs	1.000:1.000	pfam_HECT,superfamily_HECT,smart_HECT,pfscan_HECT	pfam_HECT,pfam_WW_Rsp5_WWP,pfam_C2_Ca-dep,superfamily_HECT,superfamily_WW_Rsp5_WWP,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_WW_Rsp5_WWP,smart_HECT,pfscan_HECT,pfscan_C2_membr_targeting,pfscan_WW_Rsp5_WWP	-	no_errors	HECW1	HGNC	ENSG00000002746	157	0	0.00	101	47	31.76	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186072719	186072719	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	186072719	186072719	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.10689	p.M3563I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	118	0	0.00	56	29	34.12	-	-	-
HMCN1	0	genome.wustl.edu	37	1	186072719	186072719	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	1	186072719	186072719	G	A	SNP	HMCN1	ENST00000271588	human	ensembl	69_37n	+1	known	missense	c.10689	p.M3563I	1.000	pfam_Ig_I-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,pfscan_Ig-like	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,pfam_G2_nidogen/fibulin_G2F,pfam_EGF-like_Ca-bd,pfam_Thrombospondin_1_rpt,superfamily_Green_fluorescent_prot-like,superfamily_Thrombospondin_1_rpt,superfamily_Growth_fac_rcpt,superfamily_Cadherin-like,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,smart_Thrombospondin_1_rpt,smart_G2_nidogen/fibulin_G2F,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom,pfscan_G2_nidogen/fibulin_G2F,pfscan_Thrombospondin_1_rpt,pfscan_Ig-like	-	no_errors	HMCN1	HGNC	ENSG00000143341	104	1	0.95	56	29	34.12	-	-	-
IGDCC3	0	genome.wustl.edu	37	15	65621396	65621396	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	15	65621396	65621396	C	T	SNP	IGDCC3	ENST00000327987	human	ensembl	69_37n	-1	known	missense	c.2296	p.E766K	0.002	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Fibronectin_type3,pfam_Ig_V-set,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	IGDCC3	HGNC	ENSG00000174498	30	0	0.00	13	11	45.83	-	-	-
LASP1	0	genome.wustl.edu	37	17	37074895	37074895	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	17	37074895	37074895	A	C	SNP	LASP1	ENST00000318008	human	ensembl	69_37n	+1	known	missense	c.650	p.D217A	1.000	pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_SH3_domain,pfscan_SH3_domain	pfam_Nebulin_35r-motif,pfam_Znf_LIM,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Znf_LIM,smart_Nebulin_35r-motif,smart_SH3_domain,pfscan_Znf_LIM,pfscan_Nebulin_35r-motif,pfscan_SH3_domain,prints_SH3_domain	-	no_errors	LASP1	HGNC	ENSG00000002834	30	0	0.00	34	18	33.96	-	-	-
LETM1	0	genome.wustl.edu	37	4	1838164	1838164	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	1838164	1838164	A	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.730	p.S244T	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	102	0	0.00	78	31	28.44	-	-	-
LETM1	0	genome.wustl.edu	37	4	1838164	1838164	+	Missense_Mutation	SNP	A	A	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	4	1838164	1838164	A	T	SNP	LETM1	ENST00000302787	human	ensembl	69_37n	-1	known	missense	c.730	p.S244T	1.000	pfam_LETM1	pfam_LETM1,pfscan_EF_HAND_2	-	no_errors	LETM1	HGNC	ENSG00000168924	98	0	0.00	78	31	28.44	-	-	-
LPA	0	genome.wustl.edu	37	6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	161015051	161015051	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	nonsense	c.3568	p.Q1190*	0.402	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	240	0	0.00	71	55	43.65	-	-	-
LPA	0	genome.wustl.edu	37	6	161015051	161015051	+	Nonsense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	6	161015051	161015051	G	A	SNP	LPA	ENST00000316300	human	ensembl	69_37n	-1	known	nonsense	c.3568	p.Q1190*	0.402	pfam_Kringle,superfamily_Kringle-like,smart_Kringle,pfscan_Kringle	pfam_Kringle,pfam_Peptidase_S1_S6,pfam_Peptidase_S1A_nudel,superfamily_Pept_cys/ser_Trypsin-like,superfamily_Kringle-like,smart_Kringle,smart_Peptidase_S1_S6,prints_Peptidase_S1A,pfscan_Kringle,pfscan_Peptidase_S1_S6	-	no_errors	LPA	HGNC	ENSG00000198670	258	0	0.00	71	55	43.65	-	-	-
MAGEC1	0	genome.wustl.edu	37	X	140995480	140995480	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	X	140995480	140995480	C	G	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	+1	known	missense	c.2290	p.Q764E	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	115	0	0.00	76	30	28.30	-	-	-
MAGEC1	0	genome.wustl.edu	37	X	140995480	140995480	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	X	140995480	140995480	C	G	SNP	MAGEC1	ENST00000285879	human	ensembl	69_37n	+1	known	missense	c.2290	p.Q764E	0.000	NULL	pfam_MAGE,pfscan_MAGE	-	no_errors	MAGEC1	HGNC	ENSG00000155495	99	0	0.00	76	30	28.30	-	-	-
MELK	0	genome.wustl.edu	37	9	36651752	36651752	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	36651752	36651752	G	A	SNP	MELK	ENST00000298048	human	ensembl	69_37n	+1	known	missense	c.931	p.D311N	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Kinase-assoc_KA1,pfam_LipoPS_kinase,superfamily_Kinase-like_dom,superfamily_Kinase-assoc_KA1,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	MELK	HGNC	ENSG00000165304	160	0	0.00	99	54	35.29	-	-	-
MPC2	0	genome.wustl.edu	37	1	167889845	167889845	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	167889845	167889845	C	T	SNP	MPC2	ENST00000271373	human	ensembl	69_37n	-1	known	missense	c.175	p.D59N	1.000	pfam_UPF0041	pfam_UPF0041	-	no_errors	MPC2	HGNC	ENSG00000143158	112	0	0.00	44	33	42.86	-	-	-
MUC12	0	genome.wustl.edu	37	7	100646235	100646235	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	7	100646235	100646235	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	missense	c.12820	p.E4274K	0.013	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	39	0	0.00	98	15	13.27	-	-	-
MUC12	0	genome.wustl.edu	37	7	100661916	100661916	+	Silent	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	7	100661916	100661916	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	silent	c.16436	p.*5479	0.002	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	41	0	0.00	42	9	17.65	-	-	-
MUC12	0	genome.wustl.edu	37	7	100661916	100661916	+	Silent	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	7	100661916	100661916	G	A	SNP	MUC12	ENST00000379442	human	ensembl	69_37n	+1	known	silent	c.16436	p.*5479	0.002	NULL	pfam_SEA	-	no_errors	MUC12	HGNC	ENSG00000205277	79	0	0.00	42	9	17.65	-	-	-
MUC4	0	genome.wustl.edu	37	3	195506117	195506117	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	3	195506117	195506117	G	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.12334	p.P4112T	0.000	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	17	0	0.00	64	24	27.27	-	-	-
MUC4	0	genome.wustl.edu	37	3	195513168	195513168	+	Silent	SNP	A	A	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	3	195513168	195513168	A	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5283	p.L1761	0.008	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	565	0	0.00	714	104	12.64	-	-	-
MUC4	0	genome.wustl.edu	37	3	195513168	195513168	+	Silent	SNP	A	A	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	3	195513168	195513168	A	T	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	silent	c.5283	p.L1761	0.008	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	210	2	0.94	714	104	12.64	-	-	-
NEK1	0	genome.wustl.edu	37	4	170476976	170476976	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	4	170476976	170476976	C	-	DEL	NEK1	ENST00000507142	human	ensembl	69_37n	-1	known	frame_shift_del	c.1457	p.G486fs	1.000	NULL	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK1	HGNC	ENSG00000137601	134	0	0.00	89	35	28.23	-	-	-
ODF2	0	genome.wustl.edu	37	9	131256860	131256860	+	Silent	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	9	131256860	131256860	G	A	SNP	ODF2	ENST00000372796	human	ensembl	69_37n	+1	known	silent	c.1824	p.A608	0.657	NULL	NULL	-	no_errors	ODF2	HGNC	ENSG00000136811	64	0	0.00	39	20	33.90	-	-	-
PGAP2	0	genome.wustl.edu	37	11	3819319	3819319	+	RNA	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	3819319	3819319	C	T	SNP	PGAP2	ENST00000489571	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGAP2	HGNC	ENSG00000148985	33	0	0.00	16	8	33.33	-	-	-
PGAP2	0	genome.wustl.edu	37	11	3819319	3819319	+	RNA	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	11	3819319	3819319	C	T	SNP	PGAP2	ENST00000489571	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	PGAP2	HGNC	ENSG00000148985	13	0	0.00	16	8	33.33	-	-	-
PLCG1	0	genome.wustl.edu	37	20	39796490	39796490	+	Splice_Site	SNP	A	A	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	39796490	39796490	A	G	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	+1	known	splice_site	c.2302-2	e20-2	1.000	-	-	-	no_errors	PLCG1	HGNC	ENSG00000124181	99	0	0.00	63	38	37.62	-	-	-
PLXNB2	0	genome.wustl.edu	37	22	50720382	50720382	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	22	50720382	50720382	G	A	SNP	PLXNB2	ENST00000427829	human	ensembl	69_37n	-1	putative	missense	c.299	p.S100L	0.270	NULL	NULL	-	no_start_codon:pseudogene:no_stop_codon	PLXNB2	HGNC	ENSG00000196576	40	0	0.00	17	13	41.94	-	-	-
PTPN4	0	genome.wustl.edu	37	2	120702704	120702704	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	120702704	120702704	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	+1	known	missense	c.1403	p.K468T	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	95	0	0.00	50	37	42.53	-	-	-
PTPN4	0	genome.wustl.edu	37	2	120702704	120702704	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	2	120702704	120702704	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	+1	known	missense	c.1403	p.K468T	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	101	1	0.98	50	37	42.53	-	-	-
PTPN4	0	genome.wustl.edu	37	2	120702705	120702705	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	120702705	120702705	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	+1	known	missense	c.1404	p.K468N	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	95	0	0.00	50	38	43.18	-	-	-
PTPN4	0	genome.wustl.edu	37	2	120702705	120702705	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	2	120702705	120702705	A	C	SNP	PTPN4	ENST00000263708	human	ensembl	69_37n	+1	known	missense	c.1404	p.K468N	1.000	pirsf_Tyr_Pase_non-rcpt_typ-3/4	pfam_Tyr_Pase_rcpt/non-rcpt,pfam_FERM_PH-like_C,pfam_FERM_central,pfam_FERM_N,pfam_PDZ,pfam_FERM-adjacent,superfamily_FERM_central,superfamily_PDZ,smart_Band_41_domain,smart_PDZ,smart_Tyr_Pase_rcpt/non-rcpt,smart_Tyr_Pase_cat,pirsf_Tyr_Pase_non-rcpt_typ-3/4,pfscan_FERM_domain,pfscan_PDZ,pfscan_Tyr/Dual-specificity_Pase,pfscan_Tyr_Pase_rcpt/non-rcpt,prints_Tyr_Pase_rcpt/non-rcpt,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	PTPN4	HGNC	ENSG00000088179	104	1	0.95	50	38	43.18	-	-	-
RAD54L	0	genome.wustl.edu	37	1	46738424	46738424	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	1	46738424	46738424	T	C	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	+1	known	missense	c.1325	p.M442T	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	189	0	0.00	117	57	32.76	-	-	-
RAD54L	0	genome.wustl.edu	37	1	46738424	46738424	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	1	46738424	46738424	T	C	SNP	RAD54L	ENST00000371975	human	ensembl	69_37n	+1	known	missense	c.1325	p.M442T	1.000	pfam_SNF2_N	pfam_SNF2_N,pfam_Helicase_C,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_HDA_complex_subunit-2/3,pfam_Helicase/UvrB_dom,pfam_Rad54_N,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	RAD54L	HGNC	ENSG00000085999	226	1	0.44	117	57	32.76	-	-	-
RASGRP2	0	genome.wustl.edu	37	11	64497587	64497587	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	11	64497587	64497587	C	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.1492	p.V498I	1.000	pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	31	0	0.00	15	16	51.61	-	-	-
RASGRP2	0	genome.wustl.edu	37	11	64497587	64497587	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	11	64497587	64497587	C	T	SNP	RASGRP2	ENST00000377494	human	ensembl	69_37n	-1	known	missense	c.1492	p.V498I	1.000	pfscan_Prot_Kinase_C-like_PE/DAG-bd	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_Prot_Kinase_C-like_PE/DAG-bd,superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,smart_EF_hand_Ca-bd,smart_Prot_Kinase_C-like_PE/DAG-bd,pfscan_EF_HAND_2,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRP2	HGNC	ENSG00000068831	28	0	0.00	15	16	51.61	-	-	-
REV3L	0	genome.wustl.edu	37	6	111697571	111697571	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	6	111697571	111697571	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663K	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	97	0	0.00	42	6	12.50	-	-	-
REV3L	0	genome.wustl.edu	37	6	111697571	111697571	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	6	111697571	111697571	C	T	SNP	REV3L	ENST00000358835	human	ensembl	69_37n	-1	known	missense	c.1987	p.E663K	1.000	superfamily_RNaseH-like_dom	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B	-	no_errors	REV3L	HGNC	ENSG00000009413	57	0	0.00	42	6	12.50	-	-	-
SEC24C	0	genome.wustl.edu	37	10	75527697	75527697	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	10	75527697	75527697	G	A	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	+1	known	missense	c.2113	p.D705N	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	125	0	0.00	61	37	37.76	-	-	-
SEC24C	0	genome.wustl.edu	37	10	75527697	75527697	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	10	75527697	75527697	G	A	SNP	SEC24C	ENST00000339365	human	ensembl	69_37n	+1	known	missense	c.2113	p.D705N	1.000	pfam_Sec23/24_trunk_dom	pfam_Sec23/24_trunk_dom,pfam_Sec23/24_helical_dom,pfam_Sec23_24_beta_S,pfam_Znf_Sec23_Sec24,pfam_Gelsolin_dom,superfamily_Sec23/24_helical_dom,superfamily_Znf_Sec23_Sec24	-	no_errors	SEC24C	HGNC	ENSG00000176986	211	2	0.94	61	37	37.76	-	-	-
STAU1	0	genome.wustl.edu	37	20	47736592	47736592	+	Missense_Mutation	SNP	T	T	G			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	20	47736592	47736592	T	G	SNP	STAU1	ENST00000371856	human	ensembl	69_37n	-1	known	missense	c.1040	p.N347T	1.000	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STAU1	HGNC	ENSG00000124214	73	0	0.00	54	19	25.68	-	-	-
TAF1B	0	genome.wustl.edu	37	2	9989571	9989571	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	2	9989571	9989571	A	-	DEL	TAF1B	ENST00000263663	human	ensembl	69_37n	+1	known	frame_shift_del	c.187	p.N66fs	0.991	NULL	pfam_TF_Rrn7	-	no_errors	TAF1B	HGNC	ENSG00000115750	37	0	0.00	65	9	12.00	-	-	-
TBCD	0	genome.wustl.edu	37	17	80878479	80878479	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	17	80878479	80878479	G	A	SNP	TBCD	ENST00000355528	human	ensembl	69_37n	+1	known	missense	c.2086	p.G696S	0.984	superfamily_ARM-type_fold	pfam_Tubulin_specific_chaperoneD_C,superfamily_ARM-type_fold	-	no_errors	TBCD	HGNC	ENSG00000141556	234	0	0.00	175	67	27.69	-	-	-
TDRD3	0	genome.wustl.edu	37	13	61083925	61083925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	13	61083925	61083925	C	-	DEL	TDRD3	ENST00000535286	human	ensembl	69_37n	+1	known	frame_shift_del	c.887	p.T296fs	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	114	0	0.00	22	41	61.19	-	-	-
TDRD3	0	genome.wustl.edu	37	13	61083925	61083925	+	Frame_Shift_Del	DEL	C	C	-			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-11A-31D-A10E-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	f6c39a94-160d-4231-b12f-33c28ebbacf9	13	61083925	61083925	C	-	DEL	TDRD3	ENST00000535286	human	ensembl	69_37n	+1	known	frame_shift_del	c.887	p.T296fs	1.000	pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,pfscan_UBA/transl_elong_EF1B_N_euk	pfam_DUF1767,pfam_Tudor,pfam_Survival_motor_neuron,pfam_UBA/transl_elong_EF1B_N,superfamily_UBA-like,smart_UBA/transl_elong_EF1B_N_euk,smart_Tudor,pfscan_Tudor,pfscan_UBA/transl_elong_EF1B_N_euk	-	no_errors	TDRD3	HGNC	ENSG00000083544	123	1	0.80	22	41	61.19	-	-	-
TMCO6	0	genome.wustl.edu	37	5	140023514	140023514	+	Silent	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	5	140023514	140023514	G	A	SNP	TMCO6	ENST00000252100	human	ensembl	69_37n	+1	known	silent	c.1086	p.L362	0.983	superfamily_ARM-type_fold,smart_Armadillo	superfamily_ARM-type_fold,smart_Armadillo,pfscan_Importin-a_IBB	-	no_errors	TMCO6	HGNC	ENSG00000113119	145	0	0.00	96	64	39.75	-	-	-
UBR3	0	genome.wustl.edu	37	2	170897490	170897490	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0DH-01A-11D-A099-09	TCGA-BH-A0DH-10A-01D-A099-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	7aa19e23-48fe-4ce9-89f8-dd7513e4cb62	2bb52edf-252d-480f-ad2b-afc9c890fdfe	2	170897490	170897490	G	A	SNP	UBR3	ENST00000272793	human	ensembl	69_37n	+1	known	missense	c.4655	p.R1552H	0.956	NULL	pfam_Znf_N-recognin,smart_Znf_N-recognin_met,pfscan_Znf_N-recognin	-	no_errors	UBR3	HGNC	ENSG00000144357	99	0	0.00	50	30	37.50	-	-	-
