Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
COL4A2	0	genome.wustl.edu	37	13	111138169	111138169	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	13	111138169	111138169	T	C	SNP	COL4A2	ENST00000360467	human	ensembl	69_37n	+1	known	missense	c.3193	p.F1065L	0.077	pfam_Collagen	pfam_Collagen,pfam_Collagen_VI_NC,superfamily_C-type_lectin_fold,smart_Collagen_VI_NC	-	no_errors	COL4A2	HGNC	ENSG00000134871	33	0	0.00	32	4	11.11	-	-	-
CROCCP2	0	genome.wustl.edu	37	1	16950261	16950261	+	RNA	SNP	G	G	C			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	1	16950261	16950261	G	C	SNP	CROCCP2	ENST00000421700	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.687	-	-	-	no_errors	CROCCP2	HGNC	ENSG00000215908	11	0	0.00	11	5	31.25	-	-	-
DNM1P46	0	genome.wustl.edu	37	15	100340123	100340125	+	RNA	DEL	AGA	AGA	-			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	AGA	AGA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	15	100340123	100340125	AGA	-	DEL	DNM1P46	ENST00000341853	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.899:0.883:0.880	-	-	-	no_errors	DNM1P46	HGNC	ENSG00000182397	8	0	0.00	8	4	33.33	-	-	-
GRIN2B	0	genome.wustl.edu	37	12	13764692	13764692	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	12	13764692	13764692	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1747	p.V583L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	82	0	0.00	77	9	10.47	-	-	-
GRIN2B	0	genome.wustl.edu	37	12	13764692	13764692	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	12	13764692	13764692	C	G	SNP	GRIN2B	ENST00000279593	human	ensembl	69_37n	-1	known	missense	c.1747	p.V583L	1.000	pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,prints_NMDA_rcpt	pfam_NMDAR2_C,pfam_Iontro_glu_rcpt,pfam_SBP_bac_3,pfam_Glu_rcpt_Glu/Gly-bd,pfam_ANF_lig-bd_rcpt,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIN2B	HGNC	ENSG00000150086	48	0	0.00	77	9	10.47	-	-	-
HMGXB4	0	genome.wustl.edu	37	22	35661544	35661544	+	Frame_Shift_Del	DEL	A	A	-			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	22	35661544	35661544	A	-	DEL	HMGXB4	ENST00000216106	human	ensembl	69_37n	+1	known	frame_shift_del	c.1163	p.K391fs	1.000	superfamily_HMG_superfamily	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	HMGXB4	HGNC	ENSG00000100281	32	0	0.00	33	5	12.82	-	-	-
HRNR	0	genome.wustl.edu	37	1	152191465	152191465	+	Silent	SNP	G	G	A			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	1	152191465	152191465	G	A	SNP	HRNR	ENST00000368801	human	ensembl	69_37n	-1	known	silent	c.2640	p.R880	0.000	NULL	pfam_S100_Ca-bd_sub,pfscan_EF_HAND_2	-	no_errors	HRNR	HGNC	ENSG00000197915	65	0	0.00	108	15	12.10	-	-	-
PITPNC1	0	genome.wustl.edu	37	17	65665709	65665709	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	65665709	65665709	C	T	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	+1	known	missense	c.548	p.S183F	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	119	0	0.00	133	23	14.56	-	-	-
PITPNC1	0	genome.wustl.edu	37	17	65665709	65665709	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	17	65665709	65665709	C	T	SNP	PITPNC1	ENST00000335257	human	ensembl	69_37n	+1	known	missense	c.548	p.S183F	1.000	pfam_PI_transfer	pfam_PI_transfer,prints_PI_transfer	-	no_errors	PITPNC1	HGNC	ENSG00000154217	98	0	0.00	133	23	14.56	-	-	-
SHARPIN	0	genome.wustl.edu	37	8	145154289	145154289	+	Silent	SNP	G	G	A			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	8	145154289	145154289	G	A	SNP	SHARPIN	ENST00000398712	human	ensembl	69_37n	-1	known	silent	c.813	p.V271	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	18	0	0.00	63	9	12.50	-	-	-
SHARPIN	0	genome.wustl.edu	37	8	145154289	145154289	+	Silent	SNP	G	G	A			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	8	145154289	145154289	G	A	SNP	SHARPIN	ENST00000398712	human	ensembl	69_37n	-1	known	silent	c.813	p.V271	1.000	NULL	pfam_Znf_RanBP2,smart_Znf_RanBP2,pfscan_Znf_RanBP2	-	no_errors	SHARPIN	HGNC	ENSG00000179526	27	0	0.00	63	9	12.50	-	-	-
STARD9	0	genome.wustl.edu	37	15	42984625	42984625	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	15	42984625	42984625	G	A	SNP	STARD9	ENST00000290607	human	ensembl	69_37n	+1	known	missense	c.10849	p.E3617K	0.920	NULL	pfam_Kinesin_motor_dom,pfam_START_lipid-bd,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,smart_FHA_dom,pfscan_START_lipid-bd,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	STARD9	HGNC	ENSG00000159433	32	0	0.00	34	5	12.82	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	11	0	0.00	32	8	20.00	-	-	-
TBX4	0	genome.wustl.edu	37	17	59557513	59557513	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-10A-01D-A110-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	5e039180-7cbb-44b6-bc05-6e11e7393ebe	17	59557513	59557513	C	T	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	+1	known	missense	c.854	p.S285L	0.181	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	42	0	0.00	52	11	17.46	-	-	-
TBX4	0	genome.wustl.edu	37	17	59557513	59557513	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A0H5-01A-21D-A10Y-09	TCGA-BH-A0H5-11A-62D-A10Y-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	44498a74-763a-4b7d-8b94-16c815ab8df5	6560af9c-0c1a-4659-b3ec-7a8dac4582f7	17	59557513	59557513	C	T	SNP	TBX4	ENST00000393853	human	ensembl	69_37n	+1	known	missense	c.854	p.S285L	0.181	NULL	pfam_TF_T-box,superfamily_p53-like_TF_DNA-bd,smart_TF_T-box,pfscan_TF_T-box,prints_TF_T-box	-	no_errors	TBX4	HGNC	ENSG00000121075	27	0	0.00	52	11	17.46	-	-	-
