Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ASB16	0	genome.wustl.edu	37	17	42255078	42255078	+	Silent	SNP	A	A	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	42255078	42255078	A	T	SNP	ASB16	ENST00000293414	human	ensembl	69_37n	+1	known	silent	c.1164	p.P388	0.454	NULL	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C	-	no_errors	ASB16	HGNC	ENSG00000161664	118	0	0.00	133	33	19.88	-	-	-
ATRX	0	genome.wustl.edu	37	X	76940008	76940008	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	X	76940008	76940008	T	C	SNP	ATRX	ENST00000373344	human	ensembl	69_37n	-1	known	missense	c.740	p.N247S	1.000	superfamily_Znf_FYVE_PHD	pfam_SNF2_N,pfam_Helicase_C,superfamily_Znf_FYVE_PHD,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	ATRX	HGNC	ENSG00000085224	96	0	0.00	81	55	40.44	-	-	-
AZU1	0	genome.wustl.edu	37	19	831801	831802	+	In_Frame_Ins	INS	-	-	CTT			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	831801	831802	-	CTT	INS	AZU1	ENST00000233997	human	ensembl	69_37n	+1	known	in_frame_ins	c.680_681	p.230in_frame_insF	0.168:0.216	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6	pfam_Peptidase_S1_S6,superfamily_Pept_cys/ser_Trypsin-like,smart_Peptidase_S1_S6,pfscan_Peptidase_S1_S6,prints_Peptidase_S1A	-	no_errors	AZU1	HGNC	ENSG00000172232	9	0	0.00	4	2	33.33	-	-	-
CADPS	0	genome.wustl.edu	37	3	62535703	62535703	+	Missense_Mutation	SNP	A	A	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	62535703	62535703	A	C	SNP	CADPS	ENST00000383710	human	ensembl	69_37n	-1	known	missense	c.1841	p.L614R	1.000	smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Ca-dep_secretion_activator,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	CADPS	HGNC	ENSG00000163618	72	0	0.00	69	22	24.18	-	-	-
CEP97	0	genome.wustl.edu	37	3	101477254	101477254	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	101477254	101477254	G	A	SNP	CEP97	ENST00000327230	human	ensembl	69_37n	+1	known	missense	c.1804	p.D602N	0.982	NULL	pfam_IQ_motif_EF-hand-BS,pfscan_IQ_motif_EF-hand-BS	-	no_errors	CEP97	HGNC	ENSG00000182504	36	0	0.00	23	6	20.69	-	-	-
CHRD	0	genome.wustl.edu	37	3	184104637	184104637	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	184104637	184104637	G	A	SNP	CHRD	ENST00000204604	human	ensembl	69_37n	+1	known	missense	c.2201	p.R734Q	1.000	pfam_VWF_C,smart_VWF_C,pirsf_Chordin,pfscan_VWF_C	pfam_CHRD,pfam_VWF_C,smart_VWF_C,smart_CHRD,pirsf_Chordin,pfscan_CHRD,pfscan_VWF_C	-	no_errors	CHRD	HGNC	ENSG00000090539	14	0	0.00	8	5	38.46	-	-	-
CPNE3	0	genome.wustl.edu	37	8	87568396	87568396	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	87568396	87568396	A	G	SNP	CPNE3	ENST00000198765	human	ensembl	69_37n	+1	known	missense	c.1321	p.I441V	0.998	pfam_Copine,smart_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting	-	no_errors	CPNE3	HGNC	ENSG00000085719	241	0	0.00	181	134	42.54	-	-	-
CPNE8	0	genome.wustl.edu	37	12	39087515	39087515	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	12	39087515	39087515	G	C	SNP	CPNE8	ENST00000331366	human	ensembl	69_37n	-1	known	missense	c.1087	p.L363V	0.998	pfam_Copine,smart_VWF_A,pfscan_VWF_A	pfam_Copine,pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,smart_VWF_A,pfscan_C2_membr_targeting,pfscan_VWF_A	-	no_errors	CPNE8	HGNC	ENSG00000139117	326	0	0.00	331	64	16.20	-	-	-
CYTH1	0	genome.wustl.edu	37	17	76676295	76676297	+	In_Frame_Del	DEL	CTT	CTT	-			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	CTT	CTT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	76676295	76676297	CTT	-	DEL	CYTH1	ENST00000361101	human	ensembl	69_37n	-1	known	in_frame_del	c.1095_1093	p.K365in_frame_del	1.000:1.000:1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Sec7,pfam_Pleckstrin_homology,superfamily_Sec7,smart_Sec7,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_Sec7	-	no_errors	CYTH1	HGNC	ENSG00000108669	125	0	0.00	129	28	17.83	-	-	-
EPB41L4A	0	genome.wustl.edu	37	5	111595650	111595650	+	Frame_Shift_Del	DEL	T	T	-			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	111595650	111595650	T	-	DEL	EPB41L4A	ENST00000261486	human	ensembl	69_37n	-1	known	frame_shift_del	c.669	p.G224fs	0.997	pfam_FERM_PH-like_C,pfscan_FERM_domain,prints_Ez/rad/moesin	pfam_FERM_central,pfam_FERM_N,pfam_FERM_PH-like_C,pfam_FERM-adjacent,superfamily_FERM_central,smart_Band_41_domain,pfscan_FERM_domain,prints_Band_41_fam,prints_Ez/rad/moesin	-	no_errors	EPB41L4A	HGNC	ENSG00000129595	406	0	0.00	456	65	12.24	-	-	-
ERVMER34-1	0	genome.wustl.edu	37	4	53610409	53610409	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	4	53610409	53610409	C	G	SNP	ERVMER34-1	ENST00000440542	human	ensembl	69_37n	-1	known	missense	c.1279	p.D427H	0.000	pfam_TLV/ENV_coat_polyprotein	pfam_TLV/ENV_coat_polyprotein	-	no_errors	ERVMER34-1	HGNC	ENSG00000226887	332	0	0.00	320	53	14.21	-	-	-
FAM208A	0	genome.wustl.edu	37	3	56716828	56716828	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	56716828	56716828	G	A	SNP	FAM208A	ENST00000355628	human	ensembl	69_37n	-1	known	silent	c.207	p.L69	0.389	NULL	pfam_DUF3715	-	no_errors	FAM208A	HGNC	ENSG00000163946	49	0	0.00	44	13	22.81	-	-	-
FAM5B	0	genome.wustl.edu	37	1	177199036	177199037	+	Frame_Shift_Ins	INS	-	-	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	177199036	177199037	-	T	INS	FAM5B	ENST00000361539	human	ensembl	69_37n	+1	known	frame_shift_ins	c.24_25	p.R9fs	0.497:0.446	NULL	pfam_MACPF,smart_MACPF	-	no_errors	FAM5B	HGNC	ENSG00000198797	22	0	0.00	38	5	11.63	-	-	-
FGFR1	0	genome.wustl.edu	37	8	38271457	38271457	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	8	38271457	38271457	G	A	SNP	FGFR1	ENST00000425967	human	ensembl	69_37n	-1	known	silent	c.2364	p.I788	0.027	superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Ig_I-set,pfam_Immunoglobulin,superfamily_Kinase-like_dom,smart_Ig_sub,smart_Ig_sub2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_fibroblast_GF_rcpt,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	FGFR1	HGNC	ENSG00000077782	43	0	0.00	16	12	42.86	-	-	-
GGNBP2	0	genome.wustl.edu	37	17	34937779	34937779	+	Silent	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	34937779	34937779	C	T	SNP	GGNBP2	ENST00000304718	human	ensembl	69_37n	+1	known	silent	c.1026	p.T342	1.000	NULL	NULL	-	no_errors	GGNBP2	HGNC	ENSG00000005955	232	1	0.43	182	56	23.53	-	-	-
GOLGA4	0	genome.wustl.edu	37	3	37356982	37356982	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	37356982	37356982	G	A	SNP	GOLGA4	ENST00000361924	human	ensembl	69_37n	+1	known	missense	c.1306	p.E436K	1.000	NULL	pfam_GRIP,superfamily_GRIP,superfamily_tRNA-bd_arm,superfamily_t-SNARE,superfamily_Prefoldin,smart_GRIP,pfscan_GRIP	-	no_errors	GOLGA4	HGNC	ENSG00000144674	336	0	0.00	295	59	16.67	-	-	-
HFE	0	genome.wustl.edu	37	6	26092916	26092916	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	26092916	26092916	C	T	SNP	HFE	ENST00000357618	human	ensembl	69_37n	+1	known	missense	c.620	p.P207L	0.395	pfscan_Ig-like	pfam_MHC_I_a_a1/a2,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,prints_MHC_I_a_a1/a2,pfscan_Ig-like	-	no_errors	HFE	HGNC	ENSG00000010704	213	1	0.47	177	106	37.46	-	-	-
HP1BP3	0	genome.wustl.edu	37	1	21097424	21097424	+	Missense_Mutation	SNP	T	T	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21097424	21097424	T	A	SNP	HP1BP3	ENST00000312239	human	ensembl	69_37n	-1	known	missense	c.653	p.Q218L	1.000	pfam_Histone_H1/H5,smart_Histone_H1/H5	pfam_Histone_H1/H5,smart_Histone_H1/H5	-	no_errors	HP1BP3	HGNC	ENSG00000127483	434	0	0.00	260	118	31.22	-	-	-
ITGA10	0	genome.wustl.edu	37	1	145539030	145539030	+	Silent	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	145539030	145539030	C	T	SNP	ITGA10	ENST00000369304	human	ensembl	69_37n	+1	known	silent	c.2970	p.L990	0.992	pfam_Integrin_alpha-2	pfam_Integrin_alpha-2,pfam_VWF_A,pfam_FG-GAP,smart_Int_alpha_beta-p,smart_VWF_A,pfscan_VWF_A,prints_Integrin_alpha	-	no_errors	ITGA10	HGNC	ENSG00000143127	150	0	0.00	190	77	28.84	-	-	-
LRP4	0	genome.wustl.edu	37	11	46896381	46896381	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	46896381	46896381	T	C	SNP	LRP4	ENST00000378623	human	ensembl	69_37n	-1	known	missense	c.4199	p.Y1400C	1.000	pfam_LDLR_classB_rpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDLR_classB_rpt,pfam_LDrepeatLR_classA_rpt,pfam_EGF-like_Ca-bd,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP4	HGNC	ENSG00000134569	98	0	0.00	62	55	47.01	-	-	-
MYO15A	0	genome.wustl.edu	37	17	18065989	18065989	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	18065989	18065989	T	C	SNP	MYO15A	ENST00000205890	human	ensembl	69_37n	+1	known	missense	c.9608	p.M3203T	1.000	pfam_MyTH4_dom,smart_MyTH4_dom,pfscan_MyTH4_dom	pfam_Myosin_head_motor_dom,pfam_MyTH4_dom,pfam_SH3_2,pfam_FERM_central,pfam_IQ_motif_EF-hand-BS,superfamily_FERM_central,superfamily_SH3_domain,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,smart_MyTH4_dom,smart_SH3_domain,smart_Band_41_domain,pfscan_FERM_domain,pfscan_IQ_motif_EF-hand-BS,pfscan_MyTH4_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO15A	HGNC	ENSG00000091536	41	0	0.00	34	13	27.66	-	-	-
PCDHA2	0	genome.wustl.edu	37	5	140176351	140176351	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	140176351	140176351	C	T	SNP	PCDHA2	ENST00000526136	human	ensembl	69_37n	+1	known	missense	c.1802	p.S601L	0.121	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_N,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	PCDHA2	HGNC	ENSG00000204969	88	0	0.00	121	19	13.57	-	-	-
PIK3R1	0	genome.wustl.edu	37	5	67591111	67591112	+	In_Frame_Ins	INS	-	-	GAC			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	67591111	67591112	-	GAC	INS	PIK3R1	ENST00000396611	human	ensembl	69_37n	+1	known	in_frame_ins	c.1704_1705	p.569in_frame_insD	0.152:1.000	prints_PI3kinase_P85	pfam_SH2,pfam_RhoGAP_dom,pfam_SH3_2,superfamily_Rho_GTPase_activation_prot,superfamily_SH3_domain,superfamily_Guanylate-bd_C,smart_SH3_domain,smart_RhoGAP_dom,smart_SH2,pfscan_SH2,pfscan_SH3_domain,pfscan_RhoGAP_dom,prints_PI3kinase_P85,prints_SH2	-	no_errors	PIK3R1	HGNC	ENSG00000145675	316	0	0.00	274	123	30.98	-	-	-
PLCD4	0	genome.wustl.edu	37	2	219492900	219492900	+	Silent	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	219492900	219492900	C	T	SNP	PLCD4	ENST00000417849	human	ensembl	69_37n	+1	known	silent	c.921	p.T307	0.990	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom,prints_Pinositol_PLipase_C	pfam_PLipase_C_PInositol-sp_X_dom,pfam_PLipase_C_Pinositol-sp_Y,pfam_PLipase_C_EF-hand-like,pfam_C2_Ca-dep,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_Pleckstrin_homology,smart_EF_hand_Ca-bd,smart_PLipase_C_PInositol-sp_X_dom,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C	-	no_errors	PLCD4	HGNC	ENSG00000115556	232	0	0.00	152	67	30.59	-	-	-
PPP4R2	0	genome.wustl.edu	37	3	73096423	73096423	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	73096423	73096423	G	C	SNP	PPP4R2	ENST00000356692	human	ensembl	69_37n	+1	known	missense	c.203	p.R68T	1.000	pfam_PPP4R2	pfam_PPP4R2	-	no_errors	PPP4R2	HGNC	ENSG00000163605	198	0	0.00	190	54	22.13	-	-	-
PROM2	0	genome.wustl.edu	37	2	95944749	95944749	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	2	95944749	95944749	G	A	SNP	PROM2	ENST00000317620	human	ensembl	69_37n	+1	known	silent	c.1131	p.V377	0.387	pfam_Prominin	pfam_Prominin	-	no_errors	PROM2	HGNC	ENSG00000155066	24	0	0.00	12	8	40.00	-	-	-
RAP1GAP	0	genome.wustl.edu	37	1	21928254	21928254	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	21928254	21928254	G	A	SNP	RAP1GAP	ENST00000290101	human	ensembl	69_37n	-1	known	silent	c.1767	p.S589	0.998	NULL	pfam_Rap_GAP,pfam_GoLoco_motif,smart_GoLoco_motif,pfscan_GoLoco_motif,pfscan_Rap_GAP	-	no_errors	RAP1GAP	HGNC	ENSG00000076864	60	0	0.00	57	21	26.58	-	-	-
ROS1	0	genome.wustl.edu	37	6	117710620	117710620	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	6	117710620	117710620	G	A	SNP	ROS1	ENST00000368508	human	ensembl	69_37n	-1	known	missense	c.1652	p.S551F	0.014	NULL	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Fibronectin_type3,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,smart_Fibronectin_type3,smart_LDLR_classB_rpt,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_Prot_kinase_cat_dom	-	no_errors	ROS1	HGNC	ENSG00000047936	153	1	0.65	133	19	12.50	-	-	-
SEMA6A	0	genome.wustl.edu	37	5	115823840	115823842	+	In_Frame_Del	DEL	GAA	GAA	-			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	GAA	GAA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	5	115823840	115823842	GAA	-	DEL	SEMA6A	ENST00000257414	human	ensembl	69_37n	-1	known	in_frame_del	c.708_706	p.F236in_frame_del	1.000:1.000:1.000	pfam_Semaphorin/CD100_Ag,superfamily_Semaphorin/CD100_Ag,smart_Semaphorin/CD100_Ag,pfscan_Semaphorin/CD100_Ag	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag	-	no_errors	SEMA6A	HGNC	ENSG00000092421	250	0	0.00	261	113	29.66	-	-	-
SETD1A	0	genome.wustl.edu	37	16	30977152	30977152	+	Silent	SNP	T	T	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	16	30977152	30977152	T	A	SNP	SETD1A	ENST00000262519	human	ensembl	69_37n	+1	known	silent	c.1950	p.P650	1.000	NULL	pfam_COMPASS_Set1_N-SET,pfam_SET_dom,pfam_RRM_dom,smart_RRM_dom,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_RRM_dom	-	no_errors	SETD1A	HGNC	ENSG00000099381	98	0	0.00	96	32	25.00	-	-	-
SLC22A25	0	genome.wustl.edu	37	11	62996780	62996780	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	62996780	62996780	G	A	SNP	SLC22A25	ENST00000306494	human	ensembl	69_37n	-1	known	silent	c.345	p.P115	1.000	pfscan_MFS_dom	pfam_MFS,pfam_Sub_transporter,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A25	HGNC	ENSG00000196600	187	0	0.00	134	124	48.06	-	-	-
SLC27A3	0	genome.wustl.edu	37	1	153747796	153747796	+	Silent	SNP	T	T	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	153747796	153747796	T	C	SNP	SLC27A3	ENST00000271857	human	ensembl	69_37n	+1	novel	silent	c.207	p.A69	0.478	NULL	pfam_AMP-dep_Synth/Lig	-	no_errors	SLC27A3	HGNC	ENSG00000143554	19	0	0.00	12	17	58.62	-	-	-
SOX9	0	genome.wustl.edu	37	17	70117908	70117908	+	Nonsense_Mutation	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	17	70117908	70117908	C	T	SNP	SOX9	ENST00000245479	human	ensembl	69_37n	+1	known	nonsense	c.376	p.Q126*	1.000	pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	pfam_Sox_N,pfam_HMG_superfamily,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX9	HGNC	ENSG00000125398	17	0	0.00	6	6	50.00	-	-	-
SPTA1	0	genome.wustl.edu	37	1	158644209	158644209	+	Silent	SNP	G	G	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	158644209	158644209	G	A	SNP	SPTA1	ENST00000368148	human	ensembl	69_37n	-1	known	silent	c.1260	p.D420	0.999	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_EF-hand_Ca_insen,pfam_SH3_domain,pfam_SH3_2,superfamily_SH3_domain,smart_Spectrin/alpha-actinin,smart_SH3_domain,pfscan_EF_HAND_2,pfscan_SH3_domain,prints_Spectrin_alpha_SH3	-	no_errors	SPTA1	HGNC	ENSG00000163554	198	0	0.00	270	46	14.56	-	-	-
SYS1	0	genome.wustl.edu	37	20	43992225	43992225	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	20	43992225	43992225	G	T	SNP	SYS1	ENST00000243918	human	ensembl	69_37n	+1	known	missense	c.54	p.Q18H	1.000	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	pfam_Integral_membrane_SYS1-rel,pirsf_Integral_membrane_SYS1	-	no_errors	SYS1	HGNC	ENSG00000204070	19	0	0.00	24	7	22.58	-	-	-
TIMM17A	0	genome.wustl.edu	37	1	201924671	201924671	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	201924671	201924671	G	C	SNP	TIMM17A	ENST00000367287	human	ensembl	69_37n	+1	known	missense	c.17	p.R6P	0.223	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	pfam_Tim17/Tim22/Tim23/PMP24,tigrfam_Tim17	-	no_errors	TIMM17A	HGNC	ENSG00000134375	233	0	0.00	377	144	27.53	-	-	-
TOPBP1	0	genome.wustl.edu	37	3	133337228	133337228	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	3	133337228	133337228	C	G	SNP	TOPBP1	ENST00000260810	human	ensembl	69_37n	-1	known	missense	c.3421	p.E1141Q	1.000	NULL	pfam_BRCT_dom,superfamily_BRCT_dom,superfamily_Secretoglobin,smart_BRCT_dom,pfscan_BRCT_dom	-	no_errors	TOPBP1	HGNC	ENSG00000163781	137	0	0.00	130	34	20.73	-	-	-
TTLL7	0	genome.wustl.edu	37	1	84408343	84408343	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	1	84408343	84408343	C	T	SNP	TTLL7	ENST00000260505	human	ensembl	69_37n	-1	known	missense	c.526	p.G176S	1.000	pfam_Tub_tyr_ligase	pfam_Tub_tyr_ligase	-	no_errors	TTLL7	HGNC	ENSG00000137941	57	0	0.00	40	6	13.04	-	-	-
TYR	0	genome.wustl.edu	37	11	88911241	88911241	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	11	88911241	88911241	C	G	SNP	TYR	ENST00000263321	human	ensembl	69_37n	+1	known	missense	c.120	p.S40R	0.000	NULL	pfam_Tyrosinase,superfamily_Unchr_di-copper_centre,prints_Tyrosinase	-	no_errors	TYR	HGNC	ENSG00000077498	95	0	0.00	95	15	13.64	-	-	-
VWDE	0	genome.wustl.edu	37	7	12401033	12401033	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	7	12401033	12401033	C	A	SNP	VWDE	ENST00000452576	human	ensembl	69_37n	-1	known	missense	c.3013	p.D1005Y	0.128	NULL	pfam_VWF_type-D,superfamily_Cadherin-like,smart_VWF_type-D,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	VWDE	HGNC	ENSG00000146530	131	0	0.00	140	75	34.88	-	-	-
ZNF415	0	genome.wustl.edu	37	19	53611669	53611669	+	Silent	SNP	T	T	C			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	53611669	53611669	T	C	SNP	ZNF415	ENST00000448501	human	ensembl	69_37n	-1	known	silent	c.1773	p.Q591	0.007	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2	-	no_errors	ZNF415	HGNC	ENSG00000170954	353	1	0.28	295	702	70.41	-	-	-
ZNF569	0	genome.wustl.edu	37	19	37904255	37904255	+	Missense_Mutation	SNP	C	C	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	37904255	37904255	C	G	SNP	ZNF569	ENST00000316950	human	ensembl	69_37n	-1	known	missense	c.1305	p.E435D	1.000	pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF569	HGNC	ENSG00000196437	318	0	0.00	328	70	17.59	-	-	-
ZNF90	0	genome.wustl.edu	37	19	20229605	20229605	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A18K-01A-11D-A12B-09	TCGA-BH-A18K-11A-13D-A12B-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	f75de986-bc8a-4ffe-9b35-011eee3a1446	1a1312ef-4a37-445c-80e5-529fdf7827ee	19	20229605	20229605	A	G	SNP	ZNF90	ENST00000418063	human	ensembl	69_37n	+1	known	missense	c.1242	p.I414M	0.002	pfam_Znf_C2H2,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF90	HGNC	ENSG00000213988	115	0	0.00	107	47	30.52	-	-	-
