Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ARHGEF9	0	genome.wustl.edu	37	X	62875545	62875545	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	62875545	62875545	C	T	SNP	ARHGEF9	ENST00000253401	human	ensembl	69_37n	-1	known	missense	c.1129	p.E377K	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_DH-domain,pfam_SH3_2,pfam_SH3_domain,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF9	HGNC	ENSG00000131089	331	0	0.00	373	46	10.98	-	-	-
DDX21	0	genome.wustl.edu	37	10	70737326	70737326	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	10	70737326	70737326	A	G	SNP	DDX21	ENST00000354185	human	ensembl	69_37n	+1	known	missense	c.1784	p.K595R	1.000	NULL	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_GUCT,pfam_Helicase_C,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	DDX21	HGNC	ENSG00000165732	134	0	0.00	122	43	26.06	-	-	-
DPM1	0	genome.wustl.edu	37	20	49575041	49575041	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	20	49575041	49575041	C	T	SNP	DPM1	ENST00000371582	human	ensembl	69_37n	-1	known	missense	c.20	p.S7N	0.000	NULL	pfam_Glyco_trans_2	-	no_errors	DPM1	HGNC	ENSG00000000419	67	0	0.00	65	27	29.35	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23685826	23685828	+	In_Frame_Del	DEL	TCT	TCT	-			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	TCT	TCT					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	15	23685826	23685828	TCT	-	DEL	GOLGA6L2	ENST00000567107	human	ensembl	69_37n	-1	putative	in_frame_del	c.1796_1794	p.E598in_frame_del	0.000:0.000:0.000	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	26	0	0.00	34	6	15.00	-	-	-
GPR55	0	genome.wustl.edu	37	2	231775625	231775625	+	Missense_Mutation	SNP	A	A	G			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	231775625	231775625	A	G	SNP	GPR55	ENST00000392039	human	ensembl	69_37n	-1	known	missense	c.53	p.L18P	0.528	NULL	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	-	no_errors	GPR55	HGNC	ENSG00000135898	89	0	0.00	63	22	25.88	-	-	-
KIAA0430	0	genome.wustl.edu	37	16	15702158	15702158	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	16	15702158	15702158	T	C	SNP	KIAA0430	ENST00000396368	human	ensembl	69_37n	-1	known	missense	c.4172	p.H1391R	1.000	NULL	pfam_Limkain_b1_cons_dom,pfam_NYN_limkain-b1,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	KIAA0430	HGNC	ENSG00000166783	62	0	0.00	52	22	29.73	-	-	-
LAMC3	0	genome.wustl.edu	37	9	133917083	133917083	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	9	133917083	133917083	G	A	SNP	LAMC3	ENST00000361069	human	ensembl	69_37n	+1	known	missense	c.1343	p.C448Y	1.000	pfam_EGF_laminin,smart_EGF_laminin,pfscan_EGF_laminin	pfam_EGF_laminin,pfam_Laminin_N,pfam_Laminin_B_type_IV,superfamily_Galactose-bd-like,smart_Laminin_N,smart_EGF_laminin,smart_EGF-like,smart_Laminin_B_subgr,pfscan_Laminin_B_type_IV,pfscan_EGF_laminin,pfscan_Laminin_N	-	no_errors	LAMC3	HGNC	ENSG00000050555	63	0	0.00	69	20	22.47	-	-	-
NUP35	0	genome.wustl.edu	37	2	184023015	184023015	+	Missense_Mutation	SNP	C	C	A			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	184023015	184023015	C	A	SNP	NUP35	ENST00000295119	human	ensembl	69_37n	+1	known	missense	c.614	p.S205Y	1.000	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	pfam_RRM_NUP35_dom,pirsf_Nucleoporin_NUP53	-	no_errors	NUP35	HGNC	ENSG00000163002	86	0	0.00	124	26	17.33	-	-	-
ODZ1	0	genome.wustl.edu	37	X	123514548	123514548	+	Silent	SNP	C	C	G			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	123514548	123514548	C	G	SNP	ODZ1	ENST00000422452	human	ensembl	69_37n	-1	known	silent	c.8037	p.G2679	0.001	NULL	pfam_Ten_N,pfam_EGF_extracell,superfamily_CarboxyPept-like_regulatory,smart_EGF-like,pfscan_EG-like_dom,tigrfam_YD	-	no_errors	ODZ1	HGNC	ENSG00000009694	264	0	0.00	305	112	26.86	-	-	-
PDZD4	0	genome.wustl.edu	37	X	153073934	153073934	+	Missense_Mutation	SNP	G	G	C			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	153073934	153073934	G	C	SNP	PDZD4	ENST00000164640	human	ensembl	69_37n	-1	known	missense	c.177	p.D59E	0.981	NULL	pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	PDZD4	HGNC	ENSG00000067840	29	0	0.00	28	7	20.00	-	-	-
PRKX	0	genome.wustl.edu	37	X	3544506	3544506	+	Missense_Mutation	SNP	G	G	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	X	3544506	3544506	G	T	SNP	PRKX	ENST00000262848	human	ensembl	69_37n	-1	known	missense	c.769	p.L257I	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKX	HGNC	ENSG00000183943	422	0	0.00	395	158	28.57	-	-	-
RALBP1	0	genome.wustl.edu	37	18	9524597	9524597	+	Silent	SNP	C	C	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	18	9524597	9524597	C	T	SNP	RALBP1	ENST00000019317	human	ensembl	69_37n	+1	known	silent	c.1059	p.S353	1.000	superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	pfam_RhoGAP_dom,superfamily_Rho_GTPase_activation_prot,smart_RhoGAP_dom,pfscan_RhoGAP_dom	-	no_errors	RALBP1	HGNC	ENSG00000017797	114	0	0.00	83	48	36.64	-	-	-
RAPGEF4-AS1	0	genome.wustl.edu	37	2	173591198	173591198	+	RNA	SNP	A	A	G			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	173591198	173591198	A	G	SNP	RAPGEF4-AS1	ENST00000435328	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	RAPGEF4-AS1	HGNC	ENSG00000228016	9	0	0.00	1	7	87.50	-	-	-
SF3B1	0	genome.wustl.edu	37	2	198266834	198266834	+	Missense_Mutation	SNP	T	T	C			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	198266834	198266834	T	C	SNP	SF3B1	ENST00000335508	human	ensembl	69_37n	-1	known	missense	c.2098	p.K700E	1.000	superfamily_ARM-type_fold	pfam_SF3b_su1,superfamily_ARM-type_fold	-	no_errors	SF3B1	HGNC	ENSG00000115524	91	0	0.00	88	27	23.48	-	-	-
SIK3	0	genome.wustl.edu	37	11	116766967	116766967	+	Splice_Site	SNP	A	A	G			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	11	116766967	116766967	A	G	SNP	SIK3	ENST00000375300	human	ensembl	69_37n	-1	known	splice_site	c.865+2	e6+2	1.000	-	-	-	no_errors	SIK3	HGNC	ENSG00000160584	98	0	0	69	32	31.37	-	-	-
TARSL2	0	genome.wustl.edu	37	15	102263346	102263346	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	15	102263346	102263346	C	T	SNP	TARSL2	ENST00000335968	human	ensembl	69_37n	-1	known	missense	c.319	p.D107N	0.618	NULL	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_TGS,pfam_tRNA_SAD,superfamily_Thr/Ala-tRNA-synth_IIc_edit,superfamily_Anticodon-bd,superfamily_TGS-like,smart_tRNA_SAD,prints_Thr-tRNA-synth_IIa,pfscan_aa-tRNA-synth_II,tigrfam_Thr-tRNA-synth_IIa	-	no_errors	TARSL2	HGNC	ENSG00000185418	330	1	0.30	329	116	26.07	-	-	-
TNFRSF9	0	genome.wustl.edu	37	1	7980932	7980932	+	Missense_Mutation	SNP	C	C	T			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	1	7980932	7980932	C	T	SNP	TNFRSF9	ENST00000377507	human	ensembl	69_37n	-1	known	missense	c.731	p.R244Q	0.858	prints_TNFR_9	pfam_TNFR/NGFR_Cys_rich_reg,smart_TNFR/NGFR_Cys_rich_reg,prints_TNFR_9,pfscan_TNFR/NGFR_Cys_rich_reg	-	no_errors	TNFRSF9	HGNC	ENSG00000049249	160	0	0.00	185	60	24.49	-	-	-
XDH	0	genome.wustl.edu	37	2	31588379	31588379	+	Missense_Mutation	SNP	G	G	A			TCGA-BH-A201-01A-11D-A14K-09	TCGA-BH-A201-10A-01D-A14K-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	df6e619f-67a5-49f3-9768-4826aa2c9d1b	ec9e0f5b-4363-422c-bdbd-c6eb48504a93	2	31588379	31588379	G	A	SNP	XDH	ENST00000379416	human	ensembl	69_37n	-1	known	missense	c.2488	p.R830C	1.000	pfam_AldOxase/xan_DH_Mopterin-bd,superfamily_AldOxase/xan_DH_Mopterin-bd,pirsf_Ald_Oxase/xanthine_DH	pfam_AldOxase/xan_DH_Mopterin-bd,pfam_Mopterin_DH_FAD-bd,pfam_Ald_Oxase/Xan_DH_a/b,pfam_2Fe-2S-bd,pfam_CO_DH_flav_C,pfam_2Fe-2S_ferredoxin-type,superfamily_AldOxase/xan_DH_Mopterin-bd,superfamily_FAD-bd_2,superfamily_Ald_Oxase/Xan_DH_a/b,superfamily_2Fe-2S-bd,superfamily_CO_DH_flav_C,superfamily_2Fe-2S_ferredoxin-type,pirsf_Ald_Oxase/xanthine_DH,pfscan_2Fe-2S_ferredoxin-type,tigrfam_Xanthine_DH_ssu	-	no_errors	XDH	HGNC	ENSG00000158125	115	0	0.00	96	31	24.41	-	-	-
