Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABCG8	0	genome.wustl.edu	37	2	44071747	44071747	+	Silent	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	2	44071747	44071747	G	A	SNP	ABCG8	ENST00000272286	human	ensembl	69_37n	+1	known	silent	c.165	p.Q55	1.000	pfscan_ABC_transporter-like	pfam_ABC_2_trans,pfam_ABC_transporter-like,pfscan_ABC_transporter-like	-	no_errors	ABCG8	HGNC	ENSG00000143921	32	0	0.00	14	12	46.15	-	-	-
ADAMTS16	0	genome.wustl.edu	37	5	5242237	5242237	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	5	5242237	5242237	G	T	SNP	ADAMTS16	ENST00000274181	human	ensembl	69_37n	+1	known	missense	c.2595	p.Q865H	0.012	NULL	pfam_ADAM_spacer1,pfam_Peptidase_M12B_N,pfam_Peptidase_M12B,pfam_Thrombospondin_1_rpt,pfam_PLAC,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Peptidase_M12B,prints_Peptidase_M12B_ADAM-TS	-	no_errors	ADAMTS16	HGNC	ENSG00000145536	38	0	0.00	31	4	11.43	-	-	-
AKAP9	0	genome.wustl.edu	37	7	91682267	91682267	+	Missense_Mutation	SNP	A	A	C			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	91682267	91682267	A	C	SNP	AKAP9	ENST00000359028	human	ensembl	69_37n	+1	known	missense	c.5632	p.S1878R	0.754	NULL	pfam_PACT_domain,superfamily_Prefoldin,superfamily_YbaB-like	-	no_errors	AKAP9	HGNC	ENSG00000127914	29	0	0.00	35	10	22.22	-	-	-
APLNR	0	genome.wustl.edu	37	11	57003529	57003529	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	57003529	57003529	C	T	SNP	APLNR	ENST00000257254	human	ensembl	69_37n	-1	known	missense	c.950	p.R317H	1.000	pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srv,pfam_TAS2_rcpt,prints_APJ_rcpt,prints_7TM_GPCR_Rhodpsn,prints_P2_purnocptor,prints_ATII_rcpt,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	APLNR	HGNC	ENSG00000134817	23	0	0.00	5	9	64.29	-	-	-
C17orf28	0	genome.wustl.edu	37	17	72951961	72951961	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	72951961	72951961	G	A	SNP	C17orf28	ENST00000425042	human	ensembl	69_37n	-1	known	missense	c.1562	p.S521F	1.000	NULL	pfam_Dymeclin	-	no_errors	C17orf28	HGNC	ENSG00000167861	46	0	0.00	149	40	21.16	-	-	-
C3P1	0	genome.wustl.edu	37	19	10169599	10169599	+	RNA	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	19	10169599	10169599	C	T	SNP	C3P1	ENST00000495140	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.928	-	-	-	no_errors	C3P1	HGNC	ENSG00000167798	55	0	0.00	34	8	19.05	-	-	-
CFHR5	0	genome.wustl.edu	37	1	196952137	196952137	+	Missense_Mutation	SNP	T	T	G			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	196952137	196952137	T	G	SNP	CFHR5	ENST00000367414	human	ensembl	69_37n	+1	known	missense	c.253	p.S85A	0.007	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	-	no_errors	CFHR5	HGNC	ENSG00000134389	116	0	0.00	136	31	18.56	-	-	-
CHCHD6	0	genome.wustl.edu	37	3	126423158	126423158	+	Frame_Shift_Del	DEL	G	G	-			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	126423158	126423158	G	-	DEL	CHCHD6	ENST00000290913	human	ensembl	69_37n	+1	known	frame_shift_del	c.3	p.S3fs	1.000	NULL	pfam_DUF737	-	no_errors	CHCHD6	HGNC	ENSG00000159685	11	0	0.00	4	2	33.33	-	-	-
CPT2	0	genome.wustl.edu	37	1	53676854	53676854	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	53676854	53676854	G	A	SNP	CPT2	ENST00000371486	human	ensembl	69_37n	+1	known	missense	c.1508	p.R503H	1.000	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CPT2	HGNC	ENSG00000157184	24	0	0.00	13	7	35.00	-	-	-
CYP7B1	0	genome.wustl.edu	37	8	65509378	65509378	+	Nonsense_Mutation	SNP	T	T	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	8	65509378	65509378	T	A	SNP	CYP7B1	ENST00000310193	human	ensembl	69_37n	-1	known	nonsense	c.1342	p.K448*	1.000	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_E_grp-I,prints_Cyt_P450	-	no_errors	CYP7B1	HGNC	ENSG00000172817	40	0	0.00	25	14	35.90	-	-	-
DIS3L2	0	genome.wustl.edu	37	2	233164783	233164783	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	2	233164783	233164783	G	A	SNP	DIS3L2	ENST00000325385	human	ensembl	69_37n	+1	known	missense	c.1693	p.G565R	0.999	pfam_RNase_II/R,smart_RNase_II/R	pfam_RNase_II/R,smart_RNase_II/R	-	no_errors	DIS3L2	HGNC	ENSG00000144535	44	0	0.00	35	15	30.00	-	-	-
DNAJC17	0	genome.wustl.edu	37	15	41060225	41060225	+	Silent	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	15	41060225	41060225	G	A	SNP	DNAJC17	ENST00000220496	human	ensembl	69_37n	-1	known	silent	c.828	p.L276	0.344	NULL	pfam_DnaJ_N,pfam_RRM_dom,superfamily_DnaJ_N,smart_DnaJ_N,pfscan_DnaJ_N,prints_Hsp_DnaJ	-	no_errors	DNAJC17	HGNC	ENSG00000104129	26	0	0.00	20	9	31.03	-	-	-
DSEL	0	genome.wustl.edu	37	18	65178341	65178341	+	Missense_Mutation	SNP	G	G	C			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	18	65178341	65178341	G	C	SNP	DSEL	ENST00000310045	human	ensembl	69_37n	-1	known	missense	c.3535	p.P1179A	1.000	pfam_Sulfotransferase_dom	pfam_Sulfotransferase_dom,superfamily_Chondroitin_lyas	-	no_errors	DSEL	HGNC	ENSG00000171451	79	0	0.00	34	19	35.85	-	-	-
EIF3L	0	genome.wustl.edu	37	22	38273806	38273808	+	In_Frame_Del	DEL	GCA	GCA	-			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	GCA	GCA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	38273806	38273808	GCA	-	DEL	EIF3L	ENST00000425539	human	ensembl	69_37n	+1	known	in_frame_del	c.1332_1334	p.Q445in_frame_del	1.000:1.000:1.000	pfam_TIF3_suL	pfam_TIF3_suL	-	no_errors	EIF3L	HGNC	ENSG00000100129	39	0	0.00	33	13	28.26	-	-	-
ENOSF1	0	genome.wustl.edu	37	18	674341	674341	+	Missense_Mutation	SNP	T	T	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	18	674341	674341	T	A	SNP	ENOSF1	ENST00000340116	human	ensembl	69_37n	-1	known	missense	c.1317	p.E439D	0.988	NULL	pfam_Mandelate_racemase_C,pfam_Mandelate_racemase_N,smart_Mandelate_racemase_C	-	no_errors	ENOSF1	HGNC	ENSG00000132199	118	0	0.00	146	17	10.43	-	-	-
FAM21A	0	genome.wustl.edu	37	10	51853633	51853633	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	10	51853633	51853633	C	T	SNP	FAM21A	ENST00000282633	human	ensembl	69_37n	+1	known	missense	c.1136	p.T379M	0.370	NULL	NULL	-	no_errors	FAM21A	HGNC	ENSG00000099290	17	0	0.00	8	3	27.27	-	-	-
FCAR	0	genome.wustl.edu	37	19	55399502	55399502	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	19	55399502	55399502	C	A	SNP	FCAR	ENST00000355524	human	ensembl	69_37n	+1	known	missense	c.490	p.L164I	0.000	smart_Ig_sub	smart_Ig_sub	-	no_errors	FCAR	HGNC	ENSG00000186431	26	0	0.00	23	17	42.50	-	-	-
GATA1	0	genome.wustl.edu	37	X	48650324	48650324	+	Silent	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	X	48650324	48650324	C	T	SNP	GATA1	ENST00000376670	human	ensembl	69_37n	+1	known	silent	c.294	p.Y98	0.736	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA1	HGNC	ENSG00000102145	20	0	0.00	15	7	31.82	-	-	-
GH2	0	genome.wustl.edu	37	17	61958411	61958411	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	61958411	61958411	C	A	SNP	GH2	ENST00000332800	human	ensembl	69_37n	-1	known	missense	c.269	p.R90M	0.961	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	pfam_Somatotropin,superfamily_4_helix_cytokine-like_core,prints_Somatotropin	-	no_errors	GH2	HGNC	ENSG00000136487	70	0	0.00	179	48	21.15	-	-	-
HDAC2	0	genome.wustl.edu	37	6	114292109	114292110	+	In_Frame_Ins	INS	-	-	CTG			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	6	114292109	114292110	-	CTG	INS	HDAC2	ENST00000398283	human	ensembl	69_37n	-1	known	in_frame_ins	c.246_245	p.82in_frame_insS	0.014:0.004	NULL	pfam_His_deacetylse_dom,prints_His_deacetylse_1,prints_His_deacetylse	-	no_errors	HDAC2	HGNC	ENSG00000196591	8	0	0.00	10	3	23.08	-	-	-
KLHL3	0	genome.wustl.edu	37	5	136969761	136969762	+	Frame_Shift_Del	DEL	TA	TA	-			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	TA	TA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	5	136969761	136969762	TA	-	DEL	KLHL3	ENST00000309755	human	ensembl	69_37n	-1	known	frame_shift_del	c.1415_1414	p.Y472fs	1.000:0.998	pfam_Kelch_1,smart_Kelch_1,pirsf_Kelch-like_gigaxonin	pfam_Kelch_1,pfam_BACK,pfam_BTB_POZ,pfam_Kelch_2,superfamily_BTB/POZ_fold,smart_BTB/POZ-like,smart_BACK,smart_Kelch_1,pirsf_Kelch-like_gigaxonin,pfscan_BTB/POZ-like	-	no_errors	KLHL3	HGNC	ENSG00000146021	17	0	0.00	25	10	27.78	-	-	-
MFAP3L	0	genome.wustl.edu	37	4	170912535	170912535	+	Missense_Mutation	SNP	A	A	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	4	170912535	170912535	A	T	SNP	MFAP3L	ENST00000361618	human	ensembl	69_37n	-1	known	missense	c.1224	p.H408Q	1.000	NULL	pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MFAP3L	HGNC	ENSG00000198948	62	0	0.00	72	28	28.00	-	-	-
MYH9	0	genome.wustl.edu	37	22	36684952	36684952	+	Nonsense_Mutation	SNP	C	C	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	36684952	36684952	C	A	SNP	MYH9	ENST00000216181	human	ensembl	69_37n	-1	known	nonsense	c.4591	p.E1531*	1.000	pfam_Myosin_tail,superfamily_Prefoldin	pfam_Myosin_head_motor_dom,pfam_Myosin_tail,pfam_Myosin_N,pfam_IQ_motif_EF-hand-BS,superfamily_Regulat_G_prot_signal_superfam,superfamily_Prefoldin,superfamily_Myosin_S1_N,superfamily_STAT_TF_coiled-coil,superfamily_tRNA-bd_arm,smart_Myosin_head_motor_dom,smart_IQ_motif_EF-hand-BS,prints_Myosin_head_motor_dom,pfscan_IQ_motif_EF-hand-BS	-	no_errors	MYH9	HGNC	ENSG00000100345	70	0	0.00	41	22	34.92	-	-	-
MYO1G	0	genome.wustl.edu	37	7	45004603	45004603	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	45004603	45004603	G	T	SNP	MYO1G	ENST00000258787	human	ensembl	69_37n	-1	known	missense	c.2467	p.Q823K	0.999	pfam_Myosin_tail_2	pfam_Myosin_head_motor_dom,pfam_Myosin_tail_2,smart_Myosin_head_motor_dom,prints_Myosin_head_motor_dom	-	no_errors	MYO1G	HGNC	ENSG00000136286	13	0	0.00	12	9	42.86	-	-	-
NHSL2	0	genome.wustl.edu	37	X	71360164	71360164	+	Silent	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	X	71360164	71360164	G	A	SNP	NHSL2	ENST00000540800	human	ensembl	69_37n	+1	known	silent	c.2766	p.T922	0.001	NULL	NULL	-	no_errors	NHSL2	HGNC	ENSG00000204131	44	0	0.00	38	16	29.63	-	-	-
OR51E2	0	genome.wustl.edu	37	11	4703136	4703136	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	4703136	4703136	G	T	SNP	OR51E2	ENST00000396950	human	ensembl	69_37n	-1	known	missense	c.806	p.P269H	0.071	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR51E2	HGNC	ENSG00000167332	41	0	0.00	27	10	27.03	-	-	-
PAPPA	0	genome.wustl.edu	37	9	119115961	119115961	+	Silent	SNP	T	T	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	9	119115961	119115961	T	A	SNP	PAPPA	ENST00000328252	human	ensembl	69_37n	+1	known	silent	c.4236	p.P1412	0.918	superfamily_Complement_control_module	pfam_Sushi_SCR_CCP,pfam_Notch_dom,pfam_Peptidase_M43,superfamily_ConA-like_lec_gl,superfamily_Complement_control_module,superfamily_Fibronectin_type3,superfamily_Notch_dom,smart_LamG-like,smart_Notch_dom,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP,tigrfam_Myxo_disulph_rpt	-	no_errors	PAPPA	HGNC	ENSG00000182752	86	0	0.00	58	29	33.33	-	-	-
PCF11	0	genome.wustl.edu	37	11	82877694	82877694	+	Silent	SNP	A	A	G			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	82877694	82877694	A	G	SNP	PCF11	ENST00000298281	human	ensembl	69_37n	+1	known	silent	c.1755	p.V585	0.521	NULL	pfam_RNA_pol_II-bd,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD	-	no_errors	PCF11	HGNC	ENSG00000165494	10	0	0.00	1	7	87.50	-	-	-
PKHD1L1	0	genome.wustl.edu	37	8	110424512	110424512	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	8	110424512	110424512	C	A	SNP	PKHD1L1	ENST00000378402	human	ensembl	69_37n	+1	known	missense	c.2104	p.Q702K	1.000	NULL	pfam_IPT_TIG_rcpt,pfam_G8_domain,pfam_PA14,superfamily_Ig_E-set,superfamily_Pectin_lyase_fold/virulence,superfamily_Cupredoxin,smart_IPT_TIG_rcpt,smart_PA14,smart_PbH1	-	no_errors	PKHD1L1	HGNC	ENSG00000205038	69	0	0.00	46	23	33.33	-	-	-
PLD1	0	genome.wustl.edu	37	3	171455363	171455363	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	171455363	171455363	C	T	SNP	PLD1	ENST00000351298	human	ensembl	69_37n	-1	known	missense	c.247	p.A83T	0.345	pfam_Phox,superfamily_Phox,smart_Phox,pirsf_PLipase_D_euk,pfscan_Phox	pfam_Phox,pfam_PLipase_D/transphosphatidylase,pfam_Pleckstrin_homology,superfamily_Phox,smart_Phox,smart_Pleckstrin_homology,smart_PLipase_D/transphosphatidylase,pirsf_PLipase_D_euk,pfscan_Phox,pfscan_PLipase_D/transphosphatidylase	-	no_errors	PLD1	HGNC	ENSG00000075651	84	0	0.00	86	26	23.21	-	-	-
PTGES3	0	genome.wustl.edu	37	12	57065615	57065615	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	12	57065615	57065615	C	G	SNP	PTGES3	ENST00000262033	human	ensembl	69_37n	-1	known	missense	c.203	p.R68T	1.000	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	pfam_CS_domain,superfamily_HSP20-like_chaperone,pfscan_CS-like_domain	-	no_errors	PTGES3	HGNC	ENSG00000110958	54	0	0.00	51	19	27.14	-	-	-
RBBP4	0	genome.wustl.edu	37	1	33138484	33138484	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	33138484	33138484	C	T	SNP	RBBP4	ENST00000463378	human	ensembl	69_37n	+1	putative	missense	c.473	p.S158L	1.000	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom,prints_G-protein_beta_WD-40_rep	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	RBBP4	HGNC	ENSG00000162521	89	0	0.00	70	32	31.37	-	-	-
SAMD14	0	genome.wustl.edu	37	17	48191567	48191567	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	48191567	48191567	G	A	SNP	SAMD14	ENST00000503131	human	ensembl	69_37n	-1	known	missense	c.1010	p.S337F	1.000	NULL	pfam_SAM_type1,pfam_SAM_2,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	-	no_errors	SAMD14	HGNC	ENSG00000167100	34	0	0.00	31	80	72.07	-	-	-
SBF1	0	genome.wustl.edu	37	22	50906107	50906107	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	50906107	50906107	C	T	SNP	SBF1	ENST00000380817	human	ensembl	69_37n	-1	known	missense	c.292	p.V98M	0.000	NULL	pfam_SBF2,pfam_DENN_dom,pfam_uDENN_dom,pfam_Myotub-related,pfam_dDENN_dom,pfam_GRAM,pfam_Pleckstrin_homology,smart_uDENN_dom,smart_DENN_dom,smart_dDENN_dom,smart_GRAM,smart_Pleckstrin_homology,pfscan_DENN_dom,pfscan_uDENN_dom,pfscan_dDENN_dom,pfscan_Pleckstrin_homology	-	no_errors	SBF1	HGNC	ENSG00000100241	31	0	0.00	29	4	12.12	-	-	-
SEPT5	0	genome.wustl.edu	37	22	19708187	19708187	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	22	19708187	19708187	C	T	SNP	SEPT5	ENST00000383045	human	ensembl	69_37n	+1	known	missense	c.640	p.R214W	0.998	pfam_Cell_div_GTP-bd,pirsf_Septin	pfam_Cell_div_GTP-bd,pfam_Ribosome_biogen_GTPase_RsgA,pirsf_Septin	-	no_errors	SEPT5	HGNC	ENSG00000184702	17	0	0.00	17	6	26.09	-	-	-
SERBP1	0	genome.wustl.edu	37	1	67891834	67891834	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	67891834	67891834	C	T	SNP	SERBP1	ENST00000370995	human	ensembl	69_37n	-1	known	missense	c.448	p.E150K	1.000	NULL	pfam_HABP4_PAIRBP1-bd	-	no_errors	SERBP1	HGNC	ENSG00000142864	112	0	0.00	76	43	36.13	-	-	-
SLC22A11	0	genome.wustl.edu	37	11	64338508	64338508	+	Silent	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	11	64338508	64338508	G	A	SNP	SLC22A11	ENST00000301891	human	ensembl	69_37n	+1	known	silent	c.1647	p.S549	0.973	NULL	pfam_Sub_transporter,pfam_MFS,superfamily_MFS_dom_general_subst_transpt,pfscan_MFS_dom	-	no_errors	SLC22A11	HGNC	ENSG00000168065	52	0	0.00	61	16	20.51	-	-	-
SUGP1	0	genome.wustl.edu	37	19	19390149	19390149	+	Missense_Mutation	SNP	G	G	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	19	19390149	19390149	G	T	SNP	SUGP1	ENST00000247001	human	ensembl	69_37n	-1	known	missense	c.1401	p.D467E	1.000	NULL	pfam_Surp,pfam_G_patch_dom,superfamily_Surp,smart_Surp,smart_G_patch_dom,pfscan_Surp,pfscan_G_patch_dom	-	no_errors	SUGP1	HGNC	ENSG00000105705	34	0	0.00	24	9	27.27	-	-	-
TP53	0	genome.wustl.edu	37	17	7578406	7578406	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	17	7578406	7578406	C	T	SNP	TP53	ENST00000269305	human	ensembl	69_37n	-1	known	missense	c.524	p.R175H	1.000	pfam_p53_DNA-bd,superfamily_p53-like_TF_DNA-bd,prints_p53_tumour_suppressor	pfam_p53_DNA-bd,pfam_p53_tetrameristn,pfam_p53_transactivation_domain,superfamily_p53-like_TF_DNA-bd,superfamily_p53_tetrameristn,prints_p53_tumour_suppressor	-	no_errors	TP53	HGNC	ENSG00000141510	20	0	0.00	5	15	75.00	-	-	-
TRUB1	0	genome.wustl.edu	37	10	116710886	116710886	+	Missense_Mutation	SNP	C	C	T			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	10	116710886	116710886	C	T	SNP	TRUB1	ENST00000298746	human	ensembl	69_37n	+1	known	missense	c.419	p.T140I	1.000	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	pfam_PsdUridine_synth,superfamily_PsdUridine_synth_cat_dom,tigrfam_tRNA_psdUridine_synth_TruB	-	no_errors	TRUB1	HGNC	ENSG00000165832	206	0	0.00	135	59	30.41	-	-	-
USP42	0	genome.wustl.edu	37	7	6175584	6175584	+	Splice_Site	SNP	T	T	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	6175584	6175584	T	A	SNP	USP42	ENST00000306177	human	ensembl	69_37n	+1	known	splice_site	c.553+2	e3+2	1.000	-	-	-	no_errors	USP42	HGNC	ENSG00000106346	71	0	0.00	68	25	26.88	-	-	-
VARS	0	genome.wustl.edu	37	6	31749701	31749701	+	Frame_Shift_Del	DEL	C	C	-			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	6	31749701	31749701	C	-	DEL	VARS	ENST00000375663	human	ensembl	69_37n	-1	known	frame_shift_del	c.2270	p.G757fs	1.000	pfam_aa-tRNA-synth_Ia,tigrfam_Valyl-tRNA_synthetase	pfam_aa-tRNA-synth_Ia,pfam_V/L/I-tRNA-synth_anticodon-bd,pfam_Glutathione_S-Trfase_N,pfam_Methionyl/Leucyl_tRNA_Synth,pfam_GST_C,superfamily_Val/Leu/Ile-tRNA-synth_edit,superfamily_tRNAsynth_1a_anticodon-bd,superfamily_Glutathione-S-Trfase_C-like,superfamily_tRNA-bd_arm,prints_Valyl-tRNA_synthetase,tigrfam_Valyl-tRNA_synthetase	-	no_errors	VARS	HGNC	ENSG00000204394	10	0	0.00	4	2	33.33	-	-	-
VLDLR	0	genome.wustl.edu	37	9	2648254	2648254	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	9	2648254	2648254	G	A	SNP	VLDLR	ENST00000382100	human	ensembl	69_37n	+1	known	missense	c.1869	p.M623I	1.000	pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_Ca-bd,superfamily_LDrepeatLR_classA_rpt,superfamily_Growth_fac_rcpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	VLDLR	HGNC	ENSG00000147852	58	0	0.00	34	23	40.35	-	-	-
VPS8	0	genome.wustl.edu	37	3	184570300	184570300	+	Missense_Mutation	SNP	C	C	G			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	184570300	184570300	C	G	SNP	VPS8	ENST00000287546	human	ensembl	69_37n	+1	known	missense	c.766	p.P256A	1.000	superfamily_Quinonprotein_ADH-like	superfamily_Quinonprotein_ADH-like,superfamily_ARM-type_fold,smart_Znf_RING,pfscan_Znf_RING,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	VPS8	HGNC	ENSG00000156931	82	0	0.00	22	22	50.00	-	-	-
XXYLT1	0	genome.wustl.edu	37	3	194790704	194790704	+	Missense_Mutation	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	3	194790704	194790704	G	A	SNP	XXYLT1	ENST00000310380	human	ensembl	69_37n	-1	known	missense	c.922	p.R308C	0.999	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	XXYLT1	HGNC	ENSG00000173950	8	0	0.00	25	9	26.47	-	-	-
ZC3HC1	0	genome.wustl.edu	37	7	129664182	129664182	+	Missense_Mutation	SNP	C	C	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	7	129664182	129664182	C	A	SNP	ZC3HC1	ENST00000358303	human	ensembl	69_37n	-1	known	missense	c.941	p.R314L	1.000	pfam_NIPA/Rsm1	pfam_Znf_C3HC-like,pfam_NIPA/Rsm1	-	no_errors	ZC3HC1	HGNC	ENSG00000091732	23	0	0.00	20	15	41.67	-	-	-
ZDHHC18	0	genome.wustl.edu	37	1	27176930	27176930	+	Splice_Site	SNP	G	G	A			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	1	27176930	27176930	G	A	SNP	ZDHHC18	ENST00000374142	human	ensembl	69_37n	+1	known	splice_site	c.784+1	e4+1	1.000	-	-	-	no_errors	ZDHHC18	HGNC	ENSG00000204160	57	0	0.00	58	19	24.68	-	-	-
ZNF271	0	genome.wustl.edu	37	18	32887914	32887914	+	RNA	SNP	A	A	G			TCGA-D8-A27N-01A-11D-A16D-09	TCGA-D8-A27N-10A-01D-A16D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6a411174-582a-4c68-bb04-5ea2e504bf7c	de420622-f742-4781-873a-e9faffc94dd3	18	32887914	32887914	A	G	SNP	ZNF271	ENST00000399070	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.990	-	-	-	no_errors	ZNF271	HGNC	ENSG00000257267	12	0	0.00	7	9	52.94	-	-	-
