Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADA	0	genome.wustl.edu	37	20	43255195	43255195	+	Silent	SNP	C	C	T			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	20	43255195	43255195	C	T	SNP	ADA	ENST00000372874	human	ensembl	69_37n	-1	known	silent	c.264	p.E88	1.000	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	pfam_A/AMP_deaminase_dom,tigrfam_Ado/ade_deaminase	-	no_errors	ADA	HGNC	ENSG00000196839	186	0	0.00	99	52	34.44	-	-	-
AKAP1	0	genome.wustl.edu	37	17	55183677	55183677	+	Silent	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	17	55183677	55183677	G	A	SNP	AKAP1	ENST00000337714	human	ensembl	69_37n	+1	known	silent	c.852	p.A284	0.001	NULL	pfam_Tudor,pfam_KH_dom_type_1,smart_KH_dom,smart_Tudor,pfscan_Tudor,pfscan_KH_dom_type_1	-	no_errors	AKAP1	HGNC	ENSG00000121057	205	0	0.00	138	106	43.09	-	-	-
ASB2	0	genome.wustl.edu	37	14	94417514	94417514	+	Silent	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	14	94417514	94417514	G	A	SNP	ASB2	ENST00000315988	human	ensembl	69_37n	-1	known	silent	c.567	p.R189	0.001	superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	pfam_Ankyrin_rpt,pfam_SOCS_C,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_SOCS_C,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_SOCS_C,prints_Ankyrin_rpt	-	no_errors	ASB2	HGNC	ENSG00000100628	78	0	0.00	32	39	54.93	-	-	-
BET1L	0	genome.wustl.edu	37	11	205996	205996	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	11	205996	205996	G	A	SNP	BET1L	ENST00000382762	human	ensembl	69_37n	-1	known	nonsense	c.67	p.R23*	1.000	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	pfam_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	BET1L	HGNC	ENSG00000177951	137	0	0.00	57	40	40.40	-	-	-
CHD5	0	genome.wustl.edu	37	1	6202309	6202309	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	6202309	6202309	G	A	SNP	CHD5	ENST00000262450	human	ensembl	69_37n	-1	known	missense	c.2315	p.A772V	1.000	pfam_SNF2_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_CHD_C2,pfam_SNF2_N,pfam_DUF1086,pfam_CHD_N,pfam_DUF1087,pfam_Znf_PHD-finger,pfam_Chromo_domain,pfam_Helicase_C,pfam_Helicase/UvrB_dom,superfamily_Chromodomain-like,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Chromo_domain/shadow,smart_Helicase_ATP-bd,smart_Helicase_C,pfscan_Znf_PHD-finger,pfscan_Helicase_ATP-bd,pfscan_Helicase_C,pfscan_Chromo_domain/shadow	-	no_errors	CHD5	HGNC	ENSG00000116254	124	0	0.00	51	42	45.16	-	-	-
CNTN6	0	genome.wustl.edu	37	3	1414040	1414040	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	1414040	1414040	T	C	SNP	CNTN6	ENST00000350110	human	ensembl	69_37n	+1	known	missense	c.1550	p.I517T	0.943	pfam_Ig_I-set,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Ig_V-set,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	CNTN6	HGNC	ENSG00000134115	229	0	0.00	166	112	40.14	-	-	-
COL8A1	0	genome.wustl.edu	37	3	99513227	99513227	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	99513227	99513227	G	T	SNP	COL8A1	ENST00000261037	human	ensembl	69_37n	+1	known	missense	c.482	p.G161V	1.000	pfam_Collagen	pfam_Collagen,pfam_C1q,superfamily_Tumour_necrosis_fac-like,smart_C1q,pfscan_C1q,prints_C1q	-	no_errors	COL8A1	HGNC	ENSG00000144810	131	1	0.76	97	63	39.38	-	-	-
DCHS1	0	genome.wustl.edu	37	11	6645350	6645350	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	11	6645350	6645350	G	C	SNP	DCHS1	ENST00000299441	human	ensembl	69_37n	-1	known	missense	c.7557	p.D2519E	1.000	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,prints_Cadherin,pfscan_Cadherin	-	no_errors	DCHS1	HGNC	ENSG00000166341	43	0	0.00	18	16	47.06	-	-	-
FEM1B	0	genome.wustl.edu	37	15	68582869	68582869	+	Silent	SNP	T	T	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	15	68582869	68582869	T	A	SNP	FEM1B	ENST00000306917	human	ensembl	69_37n	+1	known	silent	c.1173	p.V391	0.986	NULL	pfam_Ankyrin_rpt,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,prints_Ankyrin_rpt,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom	-	no_errors	FEM1B	HGNC	ENSG00000169018	142	0	0.00	103	80	43.72	-	-	-
FOXJ2	0	genome.wustl.edu	37	12	8203193	8203193	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	12	8203193	8203193	A	G	SNP	FOXJ2	ENST00000162391	human	ensembl	69_37n	+1	known	missense	c.1613	p.D538G	1.000	NULL	pfam_TF_fork_head,smart_TF_fork_head,pfscan_TF_fork_head,prints_TF_fork_head	-	no_errors	FOXJ2	HGNC	ENSG00000065970	226	0	0.00	126	100	44.05	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29632612	29632614	+	In_Frame_Del	DEL	AAG	AAG	-			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	AAG	AAG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	20	29632612	29632614	AAG	-	DEL	FRG1B	ENST00000278882	human	ensembl	69_37n	+1	known	in_frame_del	c.427_429	p.K144in_frame_del	1.000:1.000:1.000	pfam_FRG1	pfam_FRG1,superfamily_Actin_cross-linking	-	no_errors	FRG1B	HGNC	ENSG00000149531	25	0	0.00	67	8	10.67	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	149	0	0	80	41	33.61	-	-	-
GPATCH2	0	genome.wustl.edu	37	1	217783712	217783712	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	217783712	217783712	C	A	SNP	GPATCH2	ENST00000366935	human	ensembl	69_37n	-1	known	missense	c.1049	p.G350V	1.000	NULL	pfam_G_patch_dom,smart_G_patch_dom,pfscan_G_patch_dom	-	no_errors	GPATCH2	HGNC	ENSG00000092978	167	0	0.00	117	226	65.89	-	-	-
HNRNPR	0	genome.wustl.edu	37	1	23637492	23637492	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	1	23637492	23637492	C	A	SNP	HNRNPR	ENST00000374616	human	ensembl	69_37n	-1	known	missense	c.1366	p.G456W	1.000	tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	HNRNPR	HGNC	ENSG00000125944	230	0	0.00	128	128	50.00	-	-	-
INSIG2	0	genome.wustl.edu	37	2	118860893	118860893	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	2	118860893	118860893	G	A	SNP	INSIG2	ENST00000245787	human	ensembl	69_37n	+1	known	missense	c.365	p.S122N	1.000	pfam_INSIG_fam	pfam_INSIG_fam	-	no_errors	INSIG2	HGNC	ENSG00000125629	320	0	0.00	199	126	38.53	-	-	-
JAK3	0	genome.wustl.edu	37	19	17945965	17945965	+	Silent	SNP	C	C	T			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	19	17945965	17945965	C	T	SNP	JAK3	ENST00000458235	human	ensembl	69_37n	-1	known	silent	c.1974	p.E658	0.999	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_FERM_central,smart_Band_41_domain,smart_SH2,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pirsf_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak/Tyk2,prints_Tyr_kinase_non-rcpt_Jak3,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom	-	no_errors	JAK3	HGNC	ENSG00000105639	49	0	0.00	21	13	38.24	-	-	-
LRP1	0	genome.wustl.edu	37	12	57548459	57548459	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	12	57548459	57548459	G	A	SNP	LRP1	ENST00000243077	human	ensembl	69_37n	+1	known	missense	c.1202	p.R401H	1.000	smart_LDLR_classB_rpt,pfscan_LDLR_classB_rpt	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like_Ca-bd,smart_EGF-like,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1	HGNC	ENSG00000123384	61	0	0.00	48	30	37.50	-	-	-
LTBP4	0	genome.wustl.edu	37	19	41113324	41113324	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	19	41113324	41113324	G	A	SNP	LTBP4	ENST00000308370	human	ensembl	69_37n	+1	known	missense	c.1246	p.G416S	0.988	superfamily_TB_dom	pfam_EGF-like_Ca-bd,pfam_TB_dom,superfamily_TB_dom,smart_EGF-like,smart_EGF-like_Ca-bd,pfscan_EG-like_dom	-	no_errors	LTBP4	HGNC	ENSG00000090006	52	0	0.00	26	15	35.71	-	-	-
PYCARD	0	genome.wustl.edu	37	16	31213061	31213061	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	16	31213061	31213061	G	A	SNP	PYCARD	ENST00000247470	human	ensembl	69_37n	-1	known	nonsense	c.433	p.Q145*	0.973	pfam_CARD,superfamily_DEATH-like,pfscan_CARD	pfam_CARD,pfam_DAPIN,superfamily_DEATH-like,pfscan_CARD,pfscan_DAPIN	-	no_errors	PYCARD	HGNC	ENSG00000103490	132	0	0.00	47	78	61.90	-	-	-
RAB9B	0	genome.wustl.edu	37	X	103080672	103080672	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	X	103080672	103080672	C	A	SNP	RAB9B	ENST00000243298	human	ensembl	69_37n	-1	known	missense	c.43	p.D15Y	1.000	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	pfam_Small_GTPase,pfam_MIRO-like,pfam_Small_GTPase_ARF/SAR,pfam_Gtr1_RagA,pfam_ProtSyn_GTP-bd,smart_Small_GTPase_Ras,smart_Small_GTPase_Rab_type,smart_Small_GTPase_Rho,smart_Ran_GTPase,prints_Small_GTPase,tigrfam_Small_GTP-bd_dom	-	no_errors	RAB9B	HGNC	ENSG00000123570	152	0	0.00	116	72	38.30	-	-	-
RIMS2	0	genome.wustl.edu	37	8	104948831	104948831	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	8	104948831	104948831	T	G	SNP	RIMS2	ENST00000406091	human	ensembl	69_37n	+1	known	missense	c.2428	p.W810G	1.000	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,pfam_PDZ,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_Znf_FYVE_PHD,superfamily_PDZ,smart_PDZ,smart_C2_Ca-dep,pfscan_C2_membr_targeting,pfscan_PDZ,pfscan_Rab-bd_domain,pfscan_Znf_FYVE-rel	-	no_errors	RIMS2	HGNC	ENSG00000176406	129	0	0.00	189	75	28.20	-	-	-
USP36	0	genome.wustl.edu	37	17	76803588	76803588	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	17	76803588	76803588	G	A	SNP	USP36	ENST00000312010	human	ensembl	69_37n	-1	known	missense	c.1538	p.S513F	0.871	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP36	HGNC	ENSG00000055483	173	1	0.57	112	69	37.91	-	-	-
VAV2	0	genome.wustl.edu	37	9	136634607	136634607	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	9	136634607	136634607	T	C	SNP	VAV2	ENST00000371850	human	ensembl	69_37n	-1	known	missense	c.2366	p.N789S	1.000	superfamily_SH3_domain	pfam_DH-domain,pfam_SH3_2,pfam_CAMSAP_CH,pfam_SH3_domain,pfam_SH2,pfam_CH-domain,pfam_Prot_Kinase_C-like_PE/DAG-bd,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_CH-domain,superfamily_SH3_domain,smart_CH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Prot_Kinase_C-like_PE/DAG-bd,smart_SH3_domain,smart_SH2,pfscan_CH-domain,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_Prot_Kinase_C-like_PE/DAG-bd,pfscan_DH-domain,prints_SH2,prints_SH3_domain	-	no_errors	VAV2	HGNC	ENSG00000160293	133	0	0.00	64	53	45.30	-	-	-
VGLL4	0	genome.wustl.edu	37	3	11684952	11684952	+	Nonsense_Mutation	SNP	A	A	T			TCGA-E2-A15J-01A-11D-A12Q-09	TCGA-E2-A15J-10A-01D-A12Q-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	e5fd7cbd-8fce-49e9-8d2c-d2a2e61367a5	a496949e-c185-40d9-82d2-c09d64d8b77f	3	11684952	11684952	A	T	SNP	VGLL4	ENST00000430365	human	ensembl	69_37n	-1	known	nonsense	c.41	p.L14*	1.000	NULL	smart_TDU_repeat	-	no_errors	VGLL4	HGNC	ENSG00000144560	181	1	0.55	92	90	49.45	-	-	-
