Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AGBL1	0	genome.wustl.edu	37	15	86768172	86768172	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	15	86768172	86768172	G	T	SNP	AGBL1	ENST00000441037	human	ensembl	69_37n	+1	known	missense	c.378	p.L126F	1.000	superfamily_ARM-type_fold	pfam_Peptidase_M14,superfamily_ARM-type_fold	-	no_errors	AGBL1	HGNC	ENSG00000166748	103	0	0.00	100	36	26.47	-	-	-
ANKRD17	0	genome.wustl.edu	37	4	73942663	73942663	+	Missense_Mutation	SNP	A	A	C			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	4	73942663	73942663	A	C	SNP	ANKRD17	ENST00000558247	human	ensembl	69_37n	-1	known	missense	c.7397	p.L2466R	1.000	NULL	pfam_Ankyrin_rpt,pfam_KH_dom_type_1,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_KH_dom,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_KH_dom_type_1,prints_Ankyrin_rpt	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ANKRD17	HGNC	ENSG00000132466	55	0	0.00	40	11	21.57	-	-	-
APOBR	0	genome.wustl.edu	37	16	28507424	28507424	+	Silent	SNP	C	C	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	16	28507424	28507424	C	T	SNP	APOBR	ENST00000564831	human	ensembl	69_37n	+1	known	silent	c.1062	p.A354	0.000	NULL	NULL	-	no_errors	APOBR	HGNC	ENSG00000184730	16	0	0.00	30	11	26.83	-	-	-
ARFGEF2	0	genome.wustl.edu	37	20	47607613	47607613	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	20	47607613	47607613	T	C	SNP	ARFGEF2	ENST00000371917	human	ensembl	69_37n	+1	known	missense	c.2851	p.F951L	1.000	superfamily_ARM-type_fold	pfam_Sec7,pfam_DUF1981_SEC7_assoc,superfamily_Sec7,superfamily_ARM-type_fold,smart_Sec7,pfscan_Sec7	-	no_errors	ARFGEF2	HGNC	ENSG00000124198	100	0	0.00	52	32	38.10	-	-	-
AVL9	0	genome.wustl.edu	37	7	32598971	32598971	+	Missense_Mutation	SNP	T	T	G			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	7	32598971	32598971	T	G	SNP	AVL9	ENST00000404479	human	ensembl	69_37n	+1	known	missense	c.1110	p.I370M	1.000	pfam_Secretory_pathway_prot_Avl9	pfam_Secretory_pathway_prot_Avl9,pfam_DUF2347	-	no_errors	AVL9	HGNC	ENSG00000105778	13	0	0.00	9	6	40.00	-	-	-
CNTD1	0	genome.wustl.edu	37	17	40956304	40956305	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	17	40956304	40956305	AA	-	DEL	CNTD1	ENST00000588408	human	ensembl	69_37n	+1	known	frame_shift_del	c.307_308	p.K103fs	0.061:0.074	superfamily_Cyclin-like	pfam_Cyclin_N,superfamily_Cyclin-like	-	no_errors	CNTD1	HGNC	ENSG00000176563	64	0	0.00	28	21	41.18	-	-	-
FMN2	0	genome.wustl.edu	37	1	240370352	240370352	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	1	240370352	240370352	C	T	SNP	FMN2	ENST00000319653	human	ensembl	69_37n	+1	known	missense	c.2240	p.S747F	0.999	NULL	pfam_FH2_actin-bd,pfam_Formin_homology_1,superfamily_FH2_actin-bd,smart_Actin-bd_FH2/DRF_autoreg,pfscan_DEP_dom	-	no_errors	FMN2	HGNC	ENSG00000155816	36	0	0.00	20	17	45.95	-	-	-
NEUROD6	0	genome.wustl.edu	37	7	31378167	31378167	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	7	31378167	31378167	G	A	SNP	NEUROD6	ENST00000297142	human	ensembl	69_37n	-1	known	missense	c.716	p.A239V	0.992	pfam_Neurogenic_DUF,pirsf_TF_bHLH_NeuroD	pfam_Neurogenic_DUF,pfam_HLH_DNA-bd,superfamily_HLH_DNA-bd,smart_HLH_DNA-bd,pirsf_TF_bHLH_NeuroD,pfscan_HLH_DNA-bd	-	no_errors	NEUROD6	HGNC	ENSG00000164600	31	0	0.00	26	23	46.94	-	-	-
NME8	0	genome.wustl.edu	37	7	37896882	37896882	+	Missense_Mutation	SNP	G	G	C			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	7	37896882	37896882	G	C	SNP	NME8	ENST00000199447	human	ensembl	69_37n	+1	known	missense	c.205	p.A69P	1.000	pfam_Thioredoxin_domain,superfamily_Thioredoxin-like_fold	pfam_Nucleoside_diP_kinase,pfam_Thioredoxin_domain,superfamily_Nucleoside_diP_kinase,superfamily_Thioredoxin-like_fold,smart_Nucleoside_diP_kinase	-	no_errors	NME8	HGNC	ENSG00000086288	119	0	0.00	103	21	16.80	-	-	-
PGPEP1	0	genome.wustl.edu	37	19	18474258	18474258	+	Silent	SNP	C	C	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	18474258	18474258	C	T	SNP	PGPEP1	ENST00000269919	human	ensembl	69_37n	+1	known	silent	c.495	p.A165	0.964	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15	pfam_Peptidase_C15,superfamily_Peptidase_C15-like,pirsf_Peptidase_C15,prints_Peptidase_C15	-	no_errors	PGPEP1	HGNC	ENSG00000130517	57	0	0.00	36	20	35.71	-	-	-
PHLDB3	0	genome.wustl.edu	37	19	44005930	44005930	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	44005930	44005930	G	T	SNP	PHLDB3	ENST00000292140	human	ensembl	69_37n	-1	known	missense	c.490	p.Q164K	0.972	NULL	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PHLDB3	HGNC	ENSG00000176531	12	0	0.00	12	4	25.00	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	3	178952085	178952085	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3140	p.H1047R	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	55	0	0.00	26	26	50.00	-	-	-
PLEKHB2	0	genome.wustl.edu	37	2	131883435	131883435	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	2	131883435	131883435	G	A	SNP	PLEKHB2	ENST00000303908	human	ensembl	69_37n	+1	known	missense	c.147	p.M49I	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	-	no_errors	PLEKHB2	HGNC	ENSG00000115762	45	0	0.00	36	16	30.77	-	-	-
SERPINB6	0	genome.wustl.edu	37	6	2955880	2955880	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	2955880	2955880	C	T	SNP	SERPINB6	ENST00000335686	human	ensembl	69_37n	-1	known	missense	c.190	p.G64S	0.452	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPINB6	HGNC	ENSG00000124570	38	0	0.00	37	14	27.45	-	-	-
SIT1	0	genome.wustl.edu	37	9	35649944	35649944	+	Silent	SNP	G	G	A			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	9	35649944	35649944	G	A	SNP	SIT1	ENST00000259608	human	ensembl	69_37n	-1	known	silent	c.492	p.P164	0.000	NULL	NULL	-	no_errors	SIT1	HGNC	ENSG00000137078	30	0	0.00	12	9	42.86	-	-	-
SOX3	0	genome.wustl.edu	37	X	139586876	139586876	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	X	139586876	139586876	G	T	SNP	SOX3	ENST00000370536	human	ensembl	69_37n	-1	known	missense	c.350	p.A117E	0.021	NULL	pfam_HMG_superfamily,pfam_TF_SOX,superfamily_HMG_superfamily,smart_HMG_superfamily,pfscan_HMG_superfamily	-	no_errors	SOX3	HGNC	ENSG00000134595	8	0	0.00	8	5	38.46	-	-	-
SYNE1	0	genome.wustl.edu	37	6	152751745	152751745	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	152751745	152751745	G	A	SNP	SYNE1	ENST00000265368	human	ensembl	69_37n	-1	known	nonsense	c.4561	p.R1521*	1.000	superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_Spectrin/alpha-actinin	pfam_Spectrin_repeat,pfam_CH-domain,pfam_KASH,superfamily_CH-domain,superfamily_Calpain_domain_III,superfamily_ABC_transptrTM_dom_typ1,smart_CH-domain,smart_Spectrin/alpha-actinin,pfscan_CH-domain,pfscan_KASH	-	no_errors	SYNE1	HGNC	ENSG00000131018	98	0	0.00	15	28	65.12	-	-	-
TBCC	0	genome.wustl.edu	37	6	42712938	42712938	+	Missense_Mutation	SNP	A	A	G			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	6	42712938	42712938	A	G	SNP	TBCC	ENST00000244625	human	ensembl	69_37n	-1	known	missense	c.874	p.Y292H	1.000	pfam_Tubulin-bd_cofactor_C	pfam_Tubulin-bd_cofactor_C,smart_CARP_motif	-	no_errors	TBCC	HGNC	ENSG00000124659	94	0	0.00	72	27	27.27	-	-	-
TNKS1BP1	0	genome.wustl.edu	37	11	57077320	57077320	+	Silent	SNP	G	G	A			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	11	57077320	57077320	G	A	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	silent	c.2865	p.S955	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	63	0	0.00	34	25	41.67	-	-	-
ZNF281	0	genome.wustl.edu	37	1	200378731	200378732	+	In_Frame_Ins	INS	-	-	GCC			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	1	200378731	200378732	-	GCC	INS	ZNF281	ENST00000294740	human	ensembl	69_37n	-1	known	in_frame_ins	c.103_102	p.34in_frame_insG	0.985:0.997	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF281	HGNC	ENSG00000162702	10	0	0.00	4	2	33.33	-	-	-
ZNF846	0	genome.wustl.edu	37	19	9868344	9868345	+	Frame_Shift_Del	DEL	CG	CG	-			TCGA-E2-A1IL-01A-11D-A14G-09	TCGA-E2-A1IL-10A-01D-A14G-09	CG	CG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	1540ae03-7bb4-418b-afbc-44bf3ad60a31	6a5f0824-3724-42a3-af37-ca7215491e63	19	9868344	9868345	CG	-	DEL	ZNF846	ENST00000397902	human	ensembl	69_37n	-1	known	frame_shift_del	c.1409_1408	p.R470fs	0.077:0.001	pfam_Znf_C2H2,smart_Znf_BED_prd,smart_Znf_C2H2-like,pfscan_Znf_C2H2	pfam_Znf_C2H2,pfam_Krueppel-associated_box,superfamily_Krueppel-associated_box,smart_Krueppel-associated_box,smart_Znf_C2H2-like,smart_Znf_BED_prd,pfscan_Znf_C2H2,pfscan_Krueppel-associated_box	-	no_errors	ZNF846	HGNC	ENSG00000196605	72	0	0.00	45	13	22.03	-	-	-
