Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABHD13	0	genome.wustl.edu	37	13	108882272	108882272	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	13	108882272	108882272	C	T	SNP	ABHD13	ENST00000375898	human	ensembl	69_37n	+1	known	missense	c.706	p.R236C	1.000	NULL	pfam_AB_hydrolase_1,pfam_AXE1	-	no_errors	ABHD13	HGNC	ENSG00000139826	94	0	0.00	76	22	22.45	-	-	-
ASXL2	0	genome.wustl.edu	37	2	25982469	25982469	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	2	25982469	25982469	G	A	SNP	ASXL2	ENST00000435504	human	ensembl	69_37n	-1	known	missense	c.821	p.P274L	1.000	NULL	superfamily_Znf_FYVE_PHD	-	no_errors	ASXL2	HGNC	ENSG00000143970	151	0	0.00	137	23	14.37	-	-	-
BRCA1	0	genome.wustl.edu	37	17	41244468	41244468	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	17	41244468	41244468	C	A	SNP	BRCA1	ENST00000471181	human	ensembl	69_37n	-1	known	missense	c.3080	p.S1027I	0.912	pirsf_BRCA1	pirsf_BRCA1,pfam_BRCT_dom,pfam_Znf_C3HC4_RING-type,superfamily_BRCT_dom,smart_Znf_RING,smart_BRCT_dom,pfscan_BRCT_dom,pfscan_Znf_RING	-	no_errors	BRCA1	HGNC	ENSG00000012048	121	0	0.00	70	19	21.35	-	-	-
C14orf38	0	genome.wustl.edu	37	14	60011911	60011911	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	14	60011911	60011911	G	T	SNP	C14orf38	ENST00000281581	human	ensembl	69_37n	-1	known	missense	c.1142	p.A381D	0.000	NULL	superfamily_Prefoldin	-	no_errors	C14orf38	HGNC	ENSG00000151838	120	1	0.83	101	18	15.13	-	-	-
CBFB	0	genome.wustl.edu	37	16	67070543	67070543	+	Missense_Mutation	SNP	C	C	G			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	16	67070543	67070543	C	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	missense	c.167	p.A56G	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	98	0	0.00	42	70	61.40	-	-	-
CBX2	0	genome.wustl.edu	37	17	77755934	77755934	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	17	77755934	77755934	G	A	SNP	CBX2	ENST00000269399	human	ensembl	69_37n	+1	known	missense	c.622	p.A208T	0.001	NULL	pfam_Chromo_domain,superfamily_Chromodomain-like,smart_Chromo_domain/shadow,pfscan_Chromo_domain/shadow,prints_Chromo_dom_subgr	-	no_errors	CBX2	HGNC	ENSG00000173894	18	0	0.00	10	5	33.33	-	-	-
CD1C	0	genome.wustl.edu	37	1	158261046	158261046	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	1	158261046	158261046	T	C	SNP	CD1C	ENST00000368170	human	ensembl	69_37n	+1	known	missense	c.184	p.S62P	0.000	superfamily_MHC_I/II-like_Ag-recog	pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	CD1C	HGNC	ENSG00000158481	79	0	0.00	84	26	23.42	-	-	-
CXorf36	0	genome.wustl.edu	37	X	45011033	45011033	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	X	45011033	45011033	C	T	SNP	CXorf36	ENST00000398000	human	ensembl	69_37n	-1	known	missense	c.1166	p.C389Y	0.966	NULL	NULL	-	no_errors	CXorf36	HGNC	ENSG00000147113	102	0	0.00	42	23	35.38	-	-	-
DSPP	0	genome.wustl.edu	37	4	88534248	88534248	+	Missense_Mutation	SNP	T	T	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	4	88534248	88534248	T	A	SNP	DSPP	ENST00000282478	human	ensembl	69_37n	+1	known	missense	c.910	p.Y304N	0.769	NULL	NULL	-	no_errors	DSPP	HGNC	ENSG00000152591	61	0	0.00	33	12	26.67	-	-	-
E2F7	0	genome.wustl.edu	37	12	77439990	77439990	+	Silent	SNP	C	C	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	12	77439990	77439990	C	T	SNP	E2F7	ENST00000322886	human	ensembl	69_37n	-1	known	silent	c.657	p.L219	0.120	NULL	pfam_E2F_TDP	-	no_errors	E2F7	HGNC	ENSG00000165891	131	0	0.00	63	51	44.74	-	-	-
ELP6	0	genome.wustl.edu	37	3	47545880	47545880	+	Missense_Mutation	SNP	T	T	C			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	3	47545880	47545880	T	C	SNP	ELP6	ENST00000296149	human	ensembl	69_37n	-1	known	missense	c.263	p.K88R	1.000	pfam_UPF0405	pfam_UPF0405	-	no_errors	ELP6	HGNC	ENSG00000163832	52	0	0.00	19	8	29.63	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115705	8115706	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	10	8115705	8115706	AA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1054_1055	p.N352fs	1.000:1.000	smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	39	0	0.00	28	9	24.32	-	-	-
GRM8	0	genome.wustl.edu	37	7	126173165	126173165	+	Silent	SNP	G	G	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	126173165	126173165	G	T	SNP	GRM8	ENST00000339582	human	ensembl	69_37n	-1	known	silent	c.2271	p.I757	1.000	pfam_GPCR_3_C,pfscan_GPCR_3_C,prints_GPCR_3	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,pfscan_GPCR_3_C,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_8,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4	-	no_errors	GRM8	HGNC	ENSG00000179603	124	0	0.00	93	47	33.57	-	-	-
IFNA21	0	genome.wustl.edu	37	9	21166507	21166507	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	9	21166507	21166507	C	A	SNP	IFNA21	ENST00000380225	human	ensembl	69_37n	-1	known	missense	c.105	p.R35S	0.000	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core	pfam_Interferon_alpha/beta/delta,superfamily_4_helix_cytokine-like_core,smart_Interferon_alpha/beta/delta,prints_Interferon_alpha/beta/delta	-	no_errors	IFNA21	HGNC	ENSG00000137080	134	0	0.00	108	20	15.62	-	-	-
MLL3	0	genome.wustl.edu	37	7	151932951	151932952	+	Frame_Shift_Ins	INS	-	-	GG			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	151932951	151932952	-	GG	INS	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	frame_shift_ins	c.2720_2719	p.R907fs	1.000:0.998	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	78	0	0.00	82	17	17.17	-	-	-
MLL3	0	genome.wustl.edu	37	7	152012230	152012230	+	Nonsense_Mutation	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	152012230	152012230	G	A	SNP	MLL3	ENST00000355193	human	ensembl	69_37n	-1	known	nonsense	c.583	p.Q195*	1.000	NULL	pfam_Znf_PHD-finger,pfam_SET_dom,pfam_FYrich_C,pfam_FYrich_N,superfamily_Znf_FYVE_PHD,superfamily_HMG_superfamily,smart_Znf_PHD,smart_Znf_RING,smart_HMG_superfamily,smart_FYrich_N,smart_FYrich_C,smart_SET_dom,smart_Post-SET_dom,pfscan_SET_dom,pfscan_Post-SET_dom,pfscan_Znf_DHHC_palmitoyltrfase,pfscan_Znf_PHD-finger,pfscan_Znf_RING	-	no_errors	MLL3	HGNC	ENSG00000055609	186	0	0.00	134	26	16.25	-	-	-
SEMA3G	0	genome.wustl.edu	37	3	52469820	52469820	+	Silent	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	3	52469820	52469820	G	A	SNP	SEMA3G	ENST00000231721	human	ensembl	69_37n	-1	known	silent	c.2148	p.F716	0.001	NULL	pfam_Semaphorin/CD100_Ag,pfam_Plexin_repeat,superfamily_Semaphorin/CD100_Ag,superfamily_Plexin-like_fold,smart_Semaphorin/CD100_Ag,smart_Plexin-like,pfscan_Semaphorin/CD100_Ag,pfscan_Ig-like	-	no_errors	SEMA3G	HGNC	ENSG00000010319	72	0	0.00	33	13	28.26	-	-	-
SLC1A6	0	genome.wustl.edu	37	19	15079170	15079170	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	19	15079170	15079170	G	A	SNP	SLC1A6	ENST00000221742	human	ensembl	69_37n	-1	known	missense	c.493	p.R165W	0.761	pfam_Na-dicarboxylate_symporter	pfam_Na-dicarboxylate_symporter,prints_Na-dicarboxylate_symporter	-	no_errors	SLC1A6	HGNC	ENSG00000105143	65	0	0.00	59	23	28.05	-	-	-
SLC25A13	0	genome.wustl.edu	37	7	95761189	95761189	+	Missense_Mutation	SNP	G	G	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	7	95761189	95761189	G	A	SNP	SLC25A13	ENST00000416240	human	ensembl	69_37n	-1	known	missense	c.1460	p.A487V	1.000	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_Mitochondrial_sb/sol_carrier	pfam_Mitochondrial_sb/sol_carrier,superfamily_Mt_carrier_dom,prints_Mit_carrier,pfscan_EF_HAND_2,pfscan_Mitochondrial_sb/sol_carrier	-	no_errors	SLC25A13	HGNC	ENSG00000004864	49	0	0.00	30	7	18.92	-	-	-
SLC40A1	0	genome.wustl.edu	37	2	190428522	190428522	+	Missense_Mutation	SNP	G	G	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	2	190428522	190428522	G	T	SNP	SLC40A1	ENST00000261024	human	ensembl	69_37n	-1	known	missense	c.1190	p.P397H	1.000	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	pfam_Ferroportin-1,superfamily_MFS_dom_general_subst_transpt	-	no_errors	SLC40A1	HGNC	ENSG00000138449	58	0	0.00	48	18	27.27	-	-	-
SYNCRIP	0	genome.wustl.edu	37	6	86332254	86332254	+	Silent	SNP	T	T	C			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	6	86332254	86332254	T	C	SNP	SYNCRIP	ENST00000369622	human	ensembl	69_37n	-1	known	silent	c.954	p.G318	1.000	smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	pfam_RRM_dom,smart_RRM_dom,pfscan_RRM_dom,tigrfam_HnRNP_R/Q_splicing_fac	-	no_errors	SYNCRIP	HGNC	ENSG00000135316	220	1	0.45	145	52	26.40	-	-	-
SYT9	0	genome.wustl.edu	37	11	7439351	7439351	+	Missense_Mutation	SNP	C	C	A			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	11	7439351	7439351	C	A	SNP	SYT9	ENST00000318881	human	ensembl	69_37n	+1	known	missense	c.1329	p.D443E	0.998	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting	pfam_C2_Ca-dep,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_C2_Ca-dep,pfscan_C2_membr_targeting,prints_Synaptotagmin,prints_C2_dom	-	no_errors	SYT9	HGNC	ENSG00000170743	77	0	0.00	66	26	28.26	-	-	-
XAB2	0	genome.wustl.edu	37	19	7691056	7691056	+	Missense_Mutation	SNP	C	C	T			TCGA-E2-A1L9-01A-11D-A13L-09	TCGA-E2-A1L9-10A-01D-A188-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	a50cd2b2-913d-41bf-94ad-45464547b348	893c62e3-94ee-49f2-a0e1-64eed978c722	19	7691056	7691056	C	T	SNP	XAB2	ENST00000358368	human	ensembl	69_37n	-1	known	missense	c.623	p.R208H	0.999	NULL	smart_HAT,smart_TPR_repeat,pfscan_TPR_repeat,pfscan_TPR-contain_dom	-	no_errors	XAB2	HGNC	ENSG00000076924	43	0	0.00	33	9	21.43	-	-	-
