Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ABTB2	0	genome.wustl.edu	37	11	34173993	34173993	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	11	34173993	34173993	C	T	SNP	ABTB2	ENST00000435224	human	ensembl	69_37n	-1	known	missense	c.3019	p.D1007N	1.000	NULL	pfam_BTB_POZ,pfam_Ankyrin_rpt,superfamily_Histone-fold,superfamily_BTB/POZ_fold,superfamily_Ankyrin_rpt-contain_dom,smart_Ankyrin_rpt,smart_BTB/POZ-like,pfscan_Ankyrin_rpt,pfscan_Ankyrin_rpt-contain_dom,pfscan_BTB/POZ-like	-	no_errors	ABTB2	HGNC	ENSG00000166016	11	0	0.00	19	6	24.00	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015314	133015314	+	RNA	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	2	133015314	133015314	G	A	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.071	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	27	0	0.00	46	7	13.21	-	-	-
CCDC14	0	genome.wustl.edu	37	3	123663791	123663791	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	123663791	123663791	T	C	SNP	CCDC14	ENST00000488653	human	ensembl	69_37n	-1	known	missense	c.1392	p.I464M	0.797	NULL	NULL	-	no_errors	CCDC14	HGNC	ENSG00000175455	80	0	0.00	59	14	19.18	-	-	-
CCDC74A	0	genome.wustl.edu	37	2	132288159	132288159	+	Silent	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	2	132288159	132288159	C	T	SNP	CCDC74A	ENST00000295171	human	ensembl	69_37n	+1	known	silent	c.303	p.P101	0.638	NULL	NULL	-	no_errors	CCDC74A	HGNC	ENSG00000163040	34	0	0.00	39	16	28.57	-	-	-
CLEC18C	0	genome.wustl.edu	37	16	70211379	70211379	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	70211379	70211379	C	T	SNP	CLEC18C	ENST00000314151	human	ensembl	69_37n	+1	known	missense	c.452	p.T151M	0.997	pfam_CAP_domain,superfamily_CAP_domain,smart_Allrgn_V5/Tpx1,prints_Allrgn_V5/Tpx1	pfam_C-type_lectin,pfam_CAP_domain,superfamily_CAP_domain,superfamily_C-type_lectin_fold,smart_Allrgn_V5/Tpx1,smart_EGF-like,smart_C-type_lectin,pfscan_EG-like_dom,pfscan_C-type_lectin,prints_Allrgn_V5/Tpx1	-	no_errors	CLEC18C	HGNC	ENSG00000157335	22	0	0.00	31	10	24.39	-	-	-
DMD	0	genome.wustl.edu	37	X	32613970	32613970	+	Missense_Mutation	SNP	T	T	G			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	X	32613970	32613970	T	G	SNP	DMD	ENST00000357033	human	ensembl	69_37n	-1	known	missense	c.1506	p.Q502H	0.988	pfam_Spectrin_repeat,smart_Spectrin/alpha-actinin,pirsf_Dystrophin/utrophin	pfam_Spectrin_repeat,pfam_EF-hand_dom_typ1,pfam_EF-hand_dom_typ2,pfam_CH-domain,pfam_Znf_ZZ,pfam_WW_Rsp5_WWP,pfam_CAMSAP_CH,superfamily_CH-domain,superfamily_WW_Rsp5_WWP,smart_CH-domain,smart_Spectrin/alpha-actinin,smart_WW_Rsp5_WWP,smart_Znf_ZZ,pirsf_Dystrophin/utrophin,pfscan_CH-domain,pfscan_WW_Rsp5_WWP,pfscan_Znf_ZZ	-	no_errors	DMD	HGNC	ENSG00000198947	127	0	0.00	88	41	31.78	-	-	-
GLT8D1	0	genome.wustl.edu	37	3	52729291	52729291	+	Silent	SNP	A	A	C			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	52729291	52729291	A	C	SNP	GLT8D1	ENST00000266014	human	ensembl	69_37n	-1	known	silent	c.840	p.A280	0.995	pfam_Glyco_trans_8	pfam_Glyco_trans_8	-	no_errors	GLT8D1	HGNC	ENSG00000016864	96	0	0.00	87	12	12.12	-	-	-
GOLGA6D	0	genome.wustl.edu	37	15	75580671	75580671	+	Missense_Mutation	SNP	G	G	C			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	15	75580671	75580671	G	C	SNP	GOLGA6D	ENST00000434739	human	ensembl	69_37n	+1	known	missense	c.530	p.C177S	0.999	NULL	NULL	-	no_errors	GOLGA6D	HGNC	ENSG00000140478	26	0	0.00	39	8	17.02	-	-	-
GRAMD4	0	genome.wustl.edu	37	22	47070636	47070636	+	Silent	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	22	47070636	47070636	C	T	SNP	GRAMD4	ENST00000361034	human	ensembl	69_37n	+1	known	silent	c.1467	p.Y489	0.994	pfam_GRAM,smart_GRAM	pfam_GRAM,smart_GRAM	-	no_errors	GRAMD4	HGNC	ENSG00000075240	25	0	0.00	30	8	21.05	-	-	-
GRM6	0	genome.wustl.edu	37	5	178408703	178408703	+	Silent	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	5	178408703	178408703	C	T	SNP	GRM6	ENST00000231188	human	ensembl	69_37n	-1	known	silent	c.2589	p.T863	0.022	prints_GPCR_3_mtglu_rcpt_6	pfam_ANF_lig-bd_rcpt,pfam_GPCR_3_C,pfam_GPCR_3_9-Cys_dom,prints_GPCR_3,prints_GPCR_3_mtglu_rcpt_6,prints_GPCR_3_mtglu_rcpt,prints_GPCR_3_mtglu_rcpt_4,pfscan_GPCR_3_C	-	no_errors	GRM6	HGNC	ENSG00000113262	51	0	0.00	68	26	27.66	-	-	-
KIF16B	0	genome.wustl.edu	37	20	16488613	16488613	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	20	16488613	16488613	T	C	SNP	KIF16B	ENST00000408042	human	ensembl	69_37n	-1	known	missense	c.689	p.K230R	1.000	pfam_Kinesin_motor_dom,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	pfam_Kinesin_motor_dom,pfam_FHA_dom,superfamily_SMAD_FHA_domain,smart_Kinesin_motor_dom,pfscan_Kinesin_motor_dom,prints_Kinesin_motor_dom	-	no_errors	KIF16B	HGNC	ENSG00000089177	55	0	0.00	60	21	25.93	-	-	-
LEKR1	0	genome.wustl.edu	37	3	156710975	156710975	+	Missense_Mutation	SNP	A	A	G			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	156710975	156710975	A	G	SNP	LEKR1	ENST00000356539	human	ensembl	69_37n	+1	known	missense	c.1018	p.R340G	0.673	NULL	superfamily_Ribosomal_L29	-	no_errors	LEKR1	HGNC	ENSG00000178110	41	0	0.00	45	10	18.18	-	-	-
LRRC10	0	genome.wustl.edu	37	12	70004328	70004328	+	Silent	SNP	C	C	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	12	70004328	70004328	C	T	SNP	LRRC10	ENST00000361484	human	ensembl	69_37n	-1	known	silent	c.291	p.L97	0.998	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,smart_Leu-rich_rpt_typical-subtyp	-	no_errors	LRRC10	HGNC	ENSG00000198812	39	0	0.00	41	29	41.43	-	-	-
LRRC7	0	genome.wustl.edu	37	1	70397248	70397248	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	1	70397248	70397248	G	A	SNP	LRRC7	ENST00000035383	human	ensembl	69_37n	+1	known	missense	c.592	p.E198K	1.000	smart_Leu-rich_rpt_typical-subtyp	pfam_Leu-rich_rpt,pfam_PDZ,superfamily_PDZ,smart_Leu-rich_rpt_typical-subtyp,smart_PDZ,pfscan_PDZ	-	no_errors	LRRC7	HGNC	ENSG00000033122	63	0	0.00	48	10	17.24	-	-	-
NEK3	0	genome.wustl.edu	37	13	52725510	52725510	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	13	52725510	52725510	C	A	SNP	NEK3	ENST00000452082	human	ensembl	69_37n	-1	known	missense	c.474	p.Q158H	0.981	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	NEK3	HGNC	ENSG00000136098	84	0	0.00	45	11	19.64	-	-	-
NEURL4	0	genome.wustl.edu	37	17	7227242	7227242	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	17	7227242	7227242	G	A	SNP	NEURL4	ENST00000399464	human	ensembl	69_37n	-1	known	missense	c.2152	p.R718C	1.000	pfam_Neu_Z,smart_Neu_Z,pfscan_Neu_Z	pfam_Neu_Z,superfamily_ConA-like_lec_gl,smart_Neu_Z,pfscan_Neu_Z	-	no_errors	NEURL4	HGNC	ENSG00000215041	23	0	0.00	25	9	25.71	-	-	-
NTPCR	0	genome.wustl.edu	37	1	233092096	233092096	+	Silent	SNP	A	A	G			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	1	233092096	233092096	A	G	SNP	NTPCR	ENST00000366627	human	ensembl	69_37n	+1	known	silent	c.201	p.L67	0.015	pfam_Nuc-triphosphatase_THEP1,smart_AAA+_ATPase	pfam_Nuc-triphosphatase_THEP1,smart_AAA+_ATPase	-	no_errors	NTPCR	HGNC	ENSG00000135778	91	0	0.00	94	19	16.81	-	-	-
OR7C2	0	genome.wustl.edu	37	19	15053236	15053236	+	Silent	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	19	15053236	15053236	G	A	SNP	OR7C2	ENST00000248072	human	ensembl	69_37n	+1	known	silent	c.936	p.E312	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR7C2	HGNC	ENSG00000127529	32	0	0.00	30	9	23.08	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936082	178936082	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	3	178936082	178936082	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1624	p.E542K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	62	0	0.00	43	13	23.21	-	-	-
PTK2	0	genome.wustl.edu	37	8	141749152	141749152	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	8	141749152	141749152	C	A	SNP	PTK2	ENST00000395218	human	ensembl	69_37n	-1	known	missense	c.1790	p.R597L	1.000	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Focal_adhesion_kin_target_dom,pfam_Prot_kinase_cat_dom,pfam_FERM_central,superfamily_Kinase-like_dom,superfamily_Focal_adhesion_kin_target_dom,superfamily_FERM_central,smart_Band_41_domain,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FERM_domain,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PTK2	HGNC	ENSG00000169398	88	0	0.00	39	16	29.09	-	-	-
TMC7	0	genome.wustl.edu	37	16	19070770	19070770	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	16	19070770	19070770	G	A	SNP	TMC7	ENST00000304381	human	ensembl	69_37n	+1	known	missense	c.2060	p.G687E	1.000	NULL	pfam_TMC	-	no_errors	TMC7	HGNC	ENSG00000170537	57	0	0.00	65	27	29.35	-	-	-
WBSCR17	0	genome.wustl.edu	37	7	71175847	71175847	+	Silent	SNP	G	G	T			TCGA-E9-A1RA-01A-11D-A14G-09	TCGA-E9-A1RA-10A-01D-A14G-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6d067461-2002-468e-934d-2721f6cb97ff	6bc8e5c1-4fdf-4c35-a8db-0a5957be4e05	7	71175847	71175847	G	T	SNP	WBSCR17	ENST00000333538	human	ensembl	69_37n	+1	known	silent	c.1602	p.R534	0.927	pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	pfam_Glyco_trans_2,pfam_Ricin_B_lectin,superfamily_Ricin_B_lectin,smart_Ricin_B_lectin,pfscan_Ricin_B_lectin	-	no_errors	WBSCR17	HGNC	ENSG00000185274	14	0	0.00	20	10	33.33	-	-	-
