Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CBFB	0	genome.wustl.edu	37	16	67063371	67063371	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	16	67063371	67063371	C	G	SNP	CBFB	ENST00000290858	human	ensembl	69_37n	+1	known	missense	c.61	p.L21V	1.000	pfam_CBF_beta,superfamily_CBF_beta	pfam_CBF_beta,superfamily_CBF_beta	-	no_errors	CBFB	HGNC	ENSG00000067955	16	0	0.00	1	5	83.33	-	-	-
CSMD2	0	genome.wustl.edu	37	1	34052731	34052731	+	Silent	SNP	G	G	T			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	1	34052731	34052731	G	T	SNP	CSMD2	ENST00000373381	human	ensembl	69_37n	-1	known	silent	c.6894	p.L2298	0.985	pfam_Sushi_SCR_CCP,superfamily_Complement_control_module,smart_Sushi_SCR_CCP,pfscan_Sushi_SCR_CCP	pfam_CUB,pfam_Sushi_SCR_CCP,superfamily_CUB,superfamily_Complement_control_module,smart_CUB,smart_Sushi_SCR_CCP,pfscan_CUB,pfscan_Sushi_SCR_CCP	-	no_errors	CSMD2	HGNC	ENSG00000121904	53	0	0.00	52	11	17.46	-	-	-
CYP11B2	0	genome.wustl.edu	37	8	143994109	143994109	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	8	143994109	143994109	C	T	SNP	CYP11B2	ENST00000323110	human	ensembl	69_37n	-1	known	missense	c.1235	p.R412H	0.811	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450_B	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_mitochondrial,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_B	-	no_errors	CYP11B2	HGNC	ENSG00000179142	31	0	0.00	26	19	42.22	-	-	-
EPHB2	0	genome.wustl.edu	37	1	23111511	23111511	+	Silent	SNP	C	C	T			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	1	23111511	23111511	C	T	SNP	EPHB2	ENST00000400191	human	ensembl	69_37n	+1	known	silent	c.753	p.I251	0.965	pirsf_Tyr_kinase_ephrin_rcpt	pirsf_Tyr_kinase_ephrin_rcpt,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Ephrin_rcpt_lig-bd_dom,pfam_Prot_kinase_cat_dom,pfam_Fibronectin_type3,pfam_SAM_type1,pfam_SAM_2,pfam_Tyr-kin_ephrin_A/B_rcpt-like,superfamily_Galactose-bd-like,superfamily_Kinase-like_dom,superfamily_Fibronectin_type3,superfamily_SAM/pointed,superfamily_Growth_fac_rcpt,smart_Ephrin_rcpt_lig-bd_dom,smart_Fibronectin_type3,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_SAM,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Fibronectin_type3,pfscan_SAM,pfscan_Prot_kinase_cat_dom	-	no_errors	EPHB2	HGNC	ENSG00000133216	17	0	0.00	4	5	55.56	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	40	0	0	33	15	31.25	-	-	-
HYOU1	0	genome.wustl.edu	37	11	118919513	118919513	+	Missense_Mutation	SNP	C	C	G			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	118919513	118919513	C	G	SNP	HYOU1	ENST00000404233	human	ensembl	69_37n	-1	known	missense	c.2078	p.R693P	1.000	pfam_Hsp_70_fam	pfam_Hsp_70_fam,pfam_MreB_Mrl,prints_Hsp_70_fam	-	no_errors	HYOU1	HGNC	ENSG00000149428	57	0	0.00	34	24	41.38	-	-	-
IFT140	0	genome.wustl.edu	37	16	1575899	1575899	+	Silent	SNP	C	C	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	16	1575899	1575899	C	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	silent	c.2757	p.R919	0.961	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	9	0	0.00	12	13	52.00	-	-	-
KCNJ11	0	genome.wustl.edu	37	11	17408781	17408781	+	Silent	SNP	G	G	T			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	17408781	17408781	G	T	SNP	KCNJ11	ENST00000339994	human	ensembl	69_37n	-1	known	silent	c.858	p.I286	1.000	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2	pfam_K_chnl_inward-rec_Kir_Cr2,superfamily_Ig_E-set,pirsf_K_chnl_inward-rec_Kir,prints_K_chnl_inward-rec_Kir_Cr2,prints_K_chnl_inward-rec_Kir6.2	-	no_errors	KCNJ11	HGNC	ENSG00000187486	36	0	0.00	36	26	41.94	-	-	-
KIR2DL2	0	genome.wustl.edu	37	GL000209.1	70112	70112	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	GL000209.1	70112	70112	T	C	SNP	KIR2DL2	ENST00000400848	human	ensembl	69_37n	+1	known	missense	c.5	p.L2S	NULL	NULL	pfam_Immunoglobulin,smart_Ig_sub	-	no_errors	KIR2DL2	HGNC	ENSG00000215764	16	0	0.00	0	4	100.00	-	-	-
LDOC1	0	genome.wustl.edu	37	X	140271018	140271018	+	Silent	SNP	C	C	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	X	140271018	140271018	C	A	SNP	LDOC1	ENST00000370526	human	ensembl	69_37n	-1	known	silent	c.189	p.R63	0.996	NULL	NULL	-	no_errors	LDOC1	HGNC	ENSG00000182195	25	0	0.00	28	13	31.71	-	-	-
MXRA5	0	genome.wustl.edu	37	X	3229027	3229027	+	Missense_Mutation	SNP	T	T	C			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	X	3229027	3229027	T	C	SNP	MXRA5	ENST00000217939	human	ensembl	69_37n	-1	known	missense	c.7217	p.Q2406R	0.945	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	pfam_Ig_I-set,pfam_Ig_V-set,pfam_Immunoglobulin,smart_LRR-contain_N,smart_Leu-rich_rpt_typical-subtyp,smart_Cys-rich_flank_reg_C,smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	MXRA5	HGNC	ENSG00000101825	23	0	0.00	16	9	36.00	-	-	-
OR2D3	0	genome.wustl.edu	37	11	6942870	6942870	+	Missense_Mutation	SNP	T	T	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	6942870	6942870	T	A	SNP	OR2D3	ENST00000317834	human	ensembl	69_37n	+1	known	missense	c.638	p.M213K	0.795	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,pfscan_GPCR_Rhodpsn_supfam	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_olfarory/Srsx,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam	-	no_errors	OR2D3	HGNC	ENSG00000178358	66	0	0.00	73	19	20.65	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936091	178936091	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	3	178936091	178936091	G	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1633	p.E545K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	80	0	0.00	52	25	32.47	-	-	-
TNKS1BP1	0	genome.wustl.edu	37	11	57076056	57076056	+	Missense_Mutation	SNP	C	C	T			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	11	57076056	57076056	C	T	SNP	TNKS1BP1	ENST00000358252	human	ensembl	69_37n	-1	known	missense	c.4129	p.G1377S	0.000	NULL	NULL	-	no_errors	TNKS1BP1	HGNC	ENSG00000149115	28	0	0.00	17	13	43.33	-	-	-
USP54	0	genome.wustl.edu	37	10	75279643	75279643	+	Missense_Mutation	SNP	G	G	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	10	75279643	75279643	G	A	SNP	USP54	ENST00000339859	human	ensembl	69_37n	-1	known	missense	c.2590	p.R864C	1.000	NULL	pfam_Peptidase_C19,pfscan_Peptidase_C19	-	no_errors	USP54	HGNC	ENSG00000166348	46	0	0.00	34	12	26.09	-	-	-
WDR19	0	genome.wustl.edu	37	4	39236448	39236448	+	Missense_Mutation	SNP	C	C	A			TCGA-E9-A249-01A-11D-A167-09	TCGA-E9-A249-10A-01D-A167-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	2799ad7e-d6f0-4919-b7f6-1c957b4c74f8	adba5848-490e-4c07-9b41-a4aa9b5e6a3f	4	39236448	39236448	C	A	SNP	WDR19	ENST00000399820	human	ensembl	69_37n	+1	known	missense	c.2316	p.D772E	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,smart_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	WDR19	HGNC	ENSG00000157796	58	0	0.00	46	7	13.21	-	-	-
