Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ALDH5A1	0	genome.wustl.edu	37	6	24528350	24528350	+	Silent	SNP	G	G	C			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	24528350	24528350	G	C	SNP	ALDH5A1	ENST00000348925	human	ensembl	69_37n	+1	known	silent	c.1338	p.L446	0.497	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	pfam_Aldehyde_DH_dom,superfamily_Ald_DH/histidinol_DH,tigrfam_Succ_semiAld_DH	-	no_errors	ALDH5A1	HGNC	ENSG00000112294	48	0	0.00	26	11	29.73	-	-	-
ATP2A2	0	genome.wustl.edu	37	12	110780236	110780236	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	110780236	110780236	C	T	SNP	ATP2A2	ENST00000548169	human	ensembl	69_37n	+1	novel	missense	c.1972	p.R658C	0.974	tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_ATPase_P-typ_cation-transptr_C,pfam_Dehalogen-like_hydro,pfam_HAD-SF_hydro-like_3,superfamily_ATPase_cation_domN,superfamily_HAD-like_dom,prints_ATPase_P-typ_ion-transptr,prints_ATPase_P-typ_H-transp,prints_ATPase_P-typ_cation-exchng_asu,tigrfam_ATPase_P-typ_Ca-transp,tigrfam_ATPase_P-typ_ion-transptr	-	no_start_codon:pseudogene:no_stop_codon:bad_bp_length_for_coding_region	ATP2A2	HGNC	ENSG00000174437	76	0	0.00	94	68	41.98	-	-	-
CLEC16A	0	genome.wustl.edu	37	16	11071088	11071088	+	Silent	SNP	G	G	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	16	11071088	11071088	G	T	SNP	CLEC16A	ENST00000409790	human	ensembl	69_37n	+1	known	silent	c.735	p.R245	0.998	NULL	pfam_Uncharacterised_FPL	-	no_errors	CLEC16A	HGNC	ENSG00000038532	70	0	0.00	64	53	45.30	-	-	-
DPT	0	genome.wustl.edu	37	1	168683522	168683522	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	168683522	168683522	A	T	SNP	DPT	ENST00000367817	human	ensembl	69_37n	-1	known	missense	c.368	p.V123E	1.000	NULL	NULL	-	no_errors	DPT	HGNC	ENSG00000143196	54	0	0.00	58	12	16.90	-	-	-
EHD1	0	genome.wustl.edu	37	11	64645813	64645813	+	Missense_Mutation	SNP	A	A	C			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64645813	64645813	A	C	SNP	EHD1	ENST00000320631	human	ensembl	69_37n	-1	known	missense	c.124	p.F42V	1.000	NULL	pfam_Dynamin_GTPase,smart_EPS15_homology,pfscan_EF_HAND_2,pfscan_EPS15_homology	-	no_errors	EHD1	HGNC	ENSG00000110047	26	0	0.00	92	18	16.22	-	-	-
ELFN2	0	genome.wustl.edu	37	22	37770887	37770887	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	22	37770887	37770887	G	A	SNP	ELFN2	ENST00000349653	human	ensembl	69_37n	-1	known	missense	c.688	p.R230W	0.296	NULL	superfamily_Fibronectin_type3,smart_Leu-rich_rpt_typical-subtyp,pfscan_LPXTG-motif_cell_wall_anchor	-	no_errors	ELFN2	HGNC	ENSG00000166897	27	0	0.00	22	8	26.67	-	-	-
EPG5	0	genome.wustl.edu	37	18	43484051	43484051	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	18	43484051	43484051	C	T	SNP	EPG5	ENST00000282041	human	ensembl	69_37n	-1	known	missense	c.4361	p.R1454H	1.000	NULL	NULL	-	no_errors	EPG5	HGNC	ENSG00000152223	80	0	0.00	48	17	26.15	-	-	-
FGF18	0	genome.wustl.edu	37	5	170883561	170883561	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	170883561	170883561	G	C	SNP	FGF18	ENST00000274625	human	ensembl	69_37n	+1	known	missense	c.376	p.E126Q	1.000	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	pfam_IL1_HBGF,superfamily_Cytokine_IL1-like,smart_IL1_HBGF,prints_IL1_HBGF	-	no_errors	FGF18	HGNC	ENSG00000156427	13	0	0.00	36	7	16.28	-	-	-
MAP3K1	0	genome.wustl.edu	37	5	56177010	56177011	+	Frame_Shift_Ins	INS	-	-	ATAG			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	56177010	56177011	-	ATAG	INS	MAP3K1	ENST00000399503	human	ensembl	69_37n	+1	novel	frame_shift_ins	c.2280_2281	p.L763fs	0.954:0.994	superfamily_ARM-type_fold	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Znf_RING,pfscan_Znf_SWIM,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP3K1	HGNC	ENSG00000095015	203	0	0.00	63	80	55.94	-	-	-
MYCBPAP	0	genome.wustl.edu	37	17	48594830	48594830	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	17	48594830	48594830	C	A	SNP	MYCBPAP	ENST00000452039	human	ensembl	69_37n	+1	novel	missense	c.510	p.S170R	0.000	NULL	NULL	-	no_stop_codon	MYCBPAP	HGNC	ENSG00000136449	63	0	0.00	46	36	43.90	-	-	-
NAV1	0	genome.wustl.edu	37	1	201757631	201757631	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	1	201757631	201757631	C	T	SNP	NAV1	ENST00000367296	human	ensembl	69_37n	+1	known	missense	c.3031	p.R1011C	1.000	NULL	smart_AAA+_ATPase	-	no_errors	NAV1	HGNC	ENSG00000134369	47	0	0.00	98	24	19.67	-	-	-
NIPAL4	0	genome.wustl.edu	37	5	156899736	156899736	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	5	156899736	156899736	C	T	SNP	NIPAL4	ENST00000311946	human	ensembl	69_37n	+1	known	missense	c.1169	p.T390I	1.000	pfam_Mg_trans_NIPA	pfam_Mg_trans_NIPA,pfam_DMT	-	no_errors	NIPAL4	HGNC	ENSG00000172548	56	0	0.00	74	27	26.73	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952075	178952075	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	3	178952075	178952075	A	T	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3130	p.N1044Y	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0.00	65	33	33.67	-	-	-
POLA1	0	genome.wustl.edu	37	X	24722586	24722586	+	Nonsense_Mutation	SNP	G	G	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	X	24722586	24722586	G	T	SNP	POLA1	ENST00000379068	human	ensembl	69_37n	+1	known	nonsense	c.346	p.G116*	1.000	tigrfam_DNA-dir_DNA_pol_B_pol2	pfam_DNA-dir_DNA_pol_B_multi_dom,pfam_DNA-dir_DNA_pol_B_exonuc,pfam_Znf_DNA-dir_DNA_pol_B_alpha,pfam_DNA_pol_a_cat_su_N,superfamily_RNaseH-like_dom,smart_DNA-dir_DNA_pol_B,prints_DNA-dir_DNA_pol_B,tigrfam_DNA-dir_DNA_pol_B_pol2	-	no_errors	POLA1	HGNC	ENSG00000101868	229	0	0.00	248	67	21.27	-	-	-
RYR3	0	genome.wustl.edu	37	15	33954810	33954810	+	Silent	SNP	G	G	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	15	33954810	33954810	G	A	SNP	RYR3	ENST00000389232	human	ensembl	69_37n	+1	known	silent	c.5079	p.T1693	0.223	NULL	pfam_Ryanodine_rcpt,pfam_Ca-rel_channel,pfam_Ryanrecept_TM4-6,pfam_SPRY_rcpt,pfam_Ins145_P3_rcpt,pfam_MIR,pfam_RIH_assoc-dom,pfam_Ion_trans_dom,superfamily_MIR,superfamily_ConA-like_lec_gl,superfamily_4_helix_cytokine-like_core,superfamily_ARM-type_fold,smart_MIR_motif,smart_SPla/RYanodine_receptor_subgr,prints_Ryan_recept,pfscan_B30.2/SPRY,pfscan_EF_HAND_2,pfscan_MIR_motif	-	no_errors	RYR3	HGNC	ENSG00000198838	78	0	0.00	52	43	45.26	-	-	-
SF1	0	genome.wustl.edu	37	11	64535092	64535092	+	Silent	SNP	C	C	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	11	64535092	64535092	C	T	SNP	SF1	ENST00000377390	human	ensembl	69_37n	-1	known	silent	c.1293	p.P431	1.000	NULL	pfam_KH_dom_type_1,pfam_Znf_CCHC,superfamily_Znf_CCHC,smart_KH_dom,smart_Znf_CCHC,pfscan_Znf_CCHC,pfscan_KH_dom_type_1	-	no_errors	SF1	HGNC	ENSG00000168066	29	0	0.00	65	9	12.16	-	-	-
SNRNP200	0	genome.wustl.edu	37	2	96959238	96959238	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	96959238	96959238	G	T	SNP	SNRNP200	ENST00000323853	human	ensembl	69_37n	-1	known	missense	c.1852	p.H618N	1.000	pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,smart_Helicase_ATP-bd,pfscan_Helicase_ATP-bd	pfam_Sec63-dom,pfam_DNA/RNA_helicase_DEAD/DEAH_N,pfam_Helicase/UvrB_dom,pfam_Helicase_C,smart_Helicase_ATP-bd,smart_Helicase_C,smart_Sec63-dom,pfscan_Helicase_ATP-bd,pfscan_Helicase_C	-	no_errors	SNRNP200	HGNC	ENSG00000144028	44	0	0.00	35	4	10.26	-	-	-
SOS1	0	genome.wustl.edu	37	2	39239446	39239446	+	Silent	SNP	G	G	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	39239446	39239446	G	A	SNP	SOS1	ENST00000402219	human	ensembl	69_37n	-1	known	silent	c.2211	p.I737	1.000	superfamily_Ras_GEF_dom,smart_Ras-like_Gua-exchang_fac_N,pfscan_Ras-like_Gua-exchang_fac_N	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,pfam_Histone_core_D,superfamily_Ras_GEF_dom,superfamily_Histone-fold,superfamily_DH-domain,smart_DH-domain,smart_Pleckstrin_homology,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	SOS1	HGNC	ENSG00000115904	158	0	0.00	173	34	16.43	-	-	-
TBP	0	genome.wustl.edu	37	6	170871052	170871052	+	Silent	SNP	G	G	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	170871052	170871052	G	A	SNP	TBP	ENST00000230354	human	ensembl	69_37n	+1	known	silent	c.228	p.Q76	0.994	NULL	pfam_TBP,prints_TBP	-	no_errors	TBP	HGNC	ENSG00000112592	16	0	0.00	55	15	21.43	-	-	-
TREM1	0	genome.wustl.edu	37	6	41250151	41250151	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	6	41250151	41250151	G	T	SNP	TREM1	ENST00000244709	human	ensembl	69_37n	-1	known	missense	c.388	p.R130S	0.058	smart_Ig_sub	pfam_Ig_V-set,smart_Ig_sub	-	no_errors	TREM1	HGNC	ENSG00000124731	40	0	0.00	42	15	26.32	-	-	-
UHRF1BP1L	0	genome.wustl.edu	37	12	100452034	100452034	+	Silent	SNP	T	T	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	12	100452034	100452034	T	A	SNP	UHRF1BP1L	ENST00000279907	human	ensembl	69_37n	-1	known	silent	c.3021	p.S1007	0.297	NULL	NULL	-	no_errors	UHRF1BP1L	HGNC	ENSG00000111647	55	0	0.00	53	12	18.46	-	-	-
UNC80	0	genome.wustl.edu	37	2	210681761	210681761	+	Silent	SNP	G	G	A			TCGA-EW-A1J1-01A-11D-A188-09	TCGA-EW-A1J1-10A-01D-A13O-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	4b8d51b3-8393-45d4-a73d-3c22c561d6f3	5f2693b0-9790-4841-91e4-aecc5cdccfec	2	210681761	210681761	G	A	SNP	UNC80	ENST00000439458	human	ensembl	69_37n	+1	known	silent	c.1464	p.T488	0.173	NULL	NULL	-	no_errors	UNC80	HGNC	ENSG00000144406	38	0	0.00	55	21	27.27	-	-	-
