Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
ADAM29	0	genome.wustl.edu	37	4	175896768	175896768	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	175896768	175896768	C	T	SNP	ADAM29	ENST00000359240	human	ensembl	69_37n	+1	known	missense	c.92	p.P31L	0.075	pfam_Peptidase_M12B_N	pfam_Peptidase_M12B,pfam_ADAM_Cys-rich,pfam_Peptidase_M12B_N,pfam_Blood-coag_inhib_Disintegrin,superfamily_Blood-coag_inhib_Disintegrin,smart_Blood-coag_inhib_Disintegrin,smart_ADAM_Cys-rich,pfscan_Blood-coag_inhib_Disintegrin,pfscan_Peptidase_M12B,prints_Blood-coag_inhib_Disintegrin	-	no_errors	ADAM29	HGNC	ENSG00000168594	28	0	0.00	14	14	50.00	-	-	-
AGBL4	0	genome.wustl.edu	37	1	50489468	50489468	+	Frame_Shift_Del	DEL	T	T	-			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	50489468	50489468	T	-	DEL	AGBL4	ENST00000371839	human	ensembl	69_37n	-1	known	frame_shift_del	c.1	p.M1fs	1.000	NULL	pfam_Peptidase_M14,smart_Peptidase_M14	-	no_errors	AGBL4	HGNC	ENSG00000186094	29	0	0.00	16	2	11.11	-	-	-
ANKRD30BL	0	genome.wustl.edu	37	2	133015325	133015325	+	RNA	SNP	G	G	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	133015325	133015325	G	A	SNP	ANKRD30BL	ENST00000470729	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.126	-	-	-	no_errors	ANKRD30BL	HGNC	ENSG00000163046	30	0	0.00	21	4	16.00	-	-	-
ARHGEF4	0	genome.wustl.edu	37	2	131785560	131785560	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	131785560	131785560	A	T	SNP	ARHGEF4	ENST00000326016	human	ensembl	69_37n	+1	known	missense	c.470	p.E157V	0.994	NULL	pfam_DH-domain,pfam_SH3_domain,pfam_SH3_2,pfam_Pleckstrin_homology,superfamily_DH-domain,superfamily_SH3_domain,smart_SH3_domain,smart_DH-domain,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology,pfscan_SH3_domain,pfscan_DH-domain	-	no_errors	ARHGEF4	HGNC	ENSG00000136002	28	0	0.00	16	4	20.00	-	-	-
BRCA2	0	genome.wustl.edu	37	13	32911964	32911964	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32911964	32911964	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	+1	known	missense	c.3472	p.E1158Q	0.001	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	38	0	0.00	25	11	30.56	-	-	-
BRCA2	0	genome.wustl.edu	37	13	32912065	32912065	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	32912065	32912065	G	C	SNP	BRCA2	ENST00000380152	human	ensembl	69_37n	+1	known	missense	c.3573	p.K1191N	0.000	pirsf_DNA_recomb/repair_BRCA2	pfam_DNA_recomb/repair_BRCA2_hlx,pfam_BRCA2_repeat,pfam_BRCA2_OB_3,pfam_BRCA2_OB_1,pfam_Tower,superfamily_DNA_recomb/repair_BRCA2_hlx,superfamily_NA-bd_OB-fold-like,pirsf_DNA_recomb/repair_BRCA2,pfscan_BRCA2_repeat	-	no_errors	BRCA2	HGNC	ENSG00000139618	39	0	0.00	25	8	24.24	-	-	-
C9orf174	0	genome.wustl.edu	37	9	100087310	100087310	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	100087310	100087310	G	A	SNP	C9orf174	ENST00000375202	human	ensembl	69_37n	+1	known	missense	c.1513	p.E505K	0.861	NULL	NULL	-	no_errors	C9orf174	HGNC	ENSG00000197816	24	0	0.00	9	13	59.09	-	-	-
CDH26	0	genome.wustl.edu	37	20	58559737	58559737	+	Silent	SNP	A	A	G			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	20	58559737	58559737	A	G	SNP	CDH26	ENST00000244047	human	ensembl	69_37n	+1	known	silent	c.585	p.E195	0.048	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH26	HGNC	ENSG00000124215	57	0	0.00	29	20	40.82	-	-	-
CEP120	0	genome.wustl.edu	37	5	122682280	122682282	+	In_Frame_Del	DEL	TCC	TCC	-			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	TCC	TCC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	122682280	122682282	TCC	-	DEL	CEP120	ENST00000306467	human	ensembl	69_37n	-1	known	in_frame_del	c.2894_2892	p.E964in_frame_del	1.000:1.000:0.999	NULL	pfam_DUF3668,superfamily_C2_Ca/lipid-bd_dom_CaLB	-	no_errors	CEP120	HGNC	ENSG00000168944	70	0	0.00	48	20	29.41	-	-	-
CRAT	0	genome.wustl.edu	37	9	131859542	131859542	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	131859542	131859542	C	T	SNP	CRAT	ENST00000318080	human	ensembl	69_37n	-1	known	missense	c.1514	p.G505D	0.969	pfam_Carn_acyl_trans	pfam_Carn_acyl_trans	-	no_errors	CRAT	HGNC	ENSG00000095321	18	0	0.00	4	5	55.56	-	-	-
CREB3	0	genome.wustl.edu	37	9	35733103	35733103	+	Silent	SNP	C	C	G			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	35733103	35733103	C	G	SNP	CREB3	ENST00000353704	human	ensembl	69_37n	+1	known	silent	c.240	p.T80	1.000	NULL	pfam_bZIP_1,pfam_bZIP_2,superfamily_Euk_TF_DNA-bd,smart_bZIP,pfscan_bZIP	-	no_errors	CREB3	HGNC	ENSG00000107175	63	0	0.00	48	24	33.33	-	-	-
DNAH9	0	genome.wustl.edu	37	17	11772531	11772531	+	Silent	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	11772531	11772531	C	T	SNP	DNAH9	ENST00000262442	human	ensembl	69_37n	+1	known	silent	c.10014	p.A3338	0.404	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-1,pfam_Dynein_heavy_dom-2,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DNAH9	HGNC	ENSG00000007174	31	0	0.00	18	8	30.77	-	-	-
FAHD2B	0	genome.wustl.edu	37	2	97748462	97748462	+	RNA	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	97748462	97748462	C	T	SNP	FAHD2B	ENST00000443258	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.126	-	-	-	no_errors	FAHD2B	HGNC	ENSG00000144199	42	0	0.00	15	7	31.82	-	-	-
FBXW7	0	genome.wustl.edu	37	4	153251936	153251936	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	4	153251936	153251936	C	T	SNP	FBXW7	ENST00000281708	human	ensembl	69_37n	-1	known	missense	c.1070	p.R357K	1.000	superfamily_F-box_dom_cyclin-like	pfam_WD40_repeat,pfam_F-box_dom_cyclin-like,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_F-box_dom_cyclin-like,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW7	HGNC	ENSG00000109670	137	0	0.00	67	37	35.58	-	-	-
FRG1B	0	genome.wustl.edu	37	20	29614296	29614297	+	RNA	INS	-	-	AGA			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	20	29614296	29614297	-	AGA	INS	FRG1B	ENST00000482423	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.998:0.997	-	-	-	no_errors	FRG1B	HGNC	ENSG00000149531	8	0	0.00	7	4	36.36	-	-	-
GABRG2	0	genome.wustl.edu	37	5	161576176	161576176	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	161576176	161576176	G	T	SNP	GABRG2	ENST00000356592	human	ensembl	69_37n	+1	known	missense	c.985	p.V329F	1.000	pfam_Neurotrans-gated_channel_TM,superfamily_Neurotrans-gated_channel_TM,prints_GABAAa_rcpt,tigrfam_Neur_channel	pfam_Neur_chan_lig-bd,pfam_Neurotrans-gated_channel_TM,superfamily_Neur_chan_lig-bd,superfamily_Neurotrans-gated_channel_TM,prints_GABBAg_rcpt,prints_GABAA_rcpt,prints_GABBAg2_rcpt,prints_GABAAa_rcpt,prints_Neur_channel,tigrfam_Neur_channel	-	no_errors	GABRG2	HGNC	ENSG00000113327	127	0	0.00	78	32	29.09	-	-	-
GOLGA6L2	0	genome.wustl.edu	37	15	23689114	23689114	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	15	23689114	23689114	C	T	SNP	GOLGA6L2	ENST00000566571	human	ensembl	69_37n	-1	known	missense	c.371	p.G124D	0.000	NULL	NULL	-	no_errors	GOLGA6L2	HGNC	ENSG00000174450	17	0	0.00	5	4	44.44	-	-	-
HLA-DRB5	0	genome.wustl.edu	37	6	32489744	32489744	+	Frame_Shift_Del	DEL	G	G	-			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	6	32489744	32489744	G	-	DEL	HLA-DRB5	ENST00000374975	human	ensembl	69_37n	-1	known	frame_shift_del	c.308	p.A103fs	0.000	pfam_MHC_II_b_N,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N	pfam_MHC_II_b_N,pfam_Ig_C1-set,superfamily_MHC_I/II-like_Ag-recog,smart_MHC_II_b_N,smart_Ig_C1-set,pfscan_Ig-like	-	no_errors	HLA-DRB5	HGNC	ENSG00000198502	9	0	0.00	4	2	33.33	-	-	-
INTS6	0	genome.wustl.edu	37	13	52026554	52026554	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	13	52026554	52026554	C	T	SNP	INTS6	ENST00000311234	human	ensembl	69_37n	-1	known	missense	c.108	p.M36I	1.000	pfam_VWF_A,pfscan_VWF_A	pfam_VWF_A,pfscan_VWF_A	-	no_errors	INTS6	HGNC	ENSG00000102786	26	0	0.00	10	6	37.50	-	-	-
LINC00521	0	genome.wustl.edu	37	14	94467722	94467722	+	RNA	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	14	94467722	94467722	C	T	SNP	LINC00521	ENST00000444118	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.001	-	-	-	no_errors	LINC00521	HGNC	ENSG00000175699	11	0	0.00	8	8	50.00	-	-	-
MAP2K4	0	genome.wustl.edu	37	17	12016647	12016648	+	Frame_Shift_Del	DEL	AA	AA	-			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	AA	AA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	12016647	12016648	AA	-	DEL	MAP2K4	ENST00000415385	human	ensembl	69_37n	+1	known	frame_shift_del	c.816_817	p.D274fs	0.986:1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	MAP2K4	HGNC	ENSG00000065559	33	0	0.00	8	9	50.00	-	-	-
MUC4	0	genome.wustl.edu	37	3	195510372	195510372	+	Missense_Mutation	SNP	G	G	C			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	195510372	195510372	G	C	SNP	MUC4	ENST00000463781	human	ensembl	69_37n	-1	known	missense	c.8079	p.D2693E	0.004	NULL	pfam_Nidogen_extracell_dom,pfam_AMOP,pfam_VWF_type-D,smart_Nidogen_extracell_dom,smart_AMOP,smart_VWF_type-D,smart_EGF-like,pfscan_AMOP,pfscan_EG-like_dom	-	no_errors	MUC4	HGNC	ENSG00000145113	27	0	0.00	15	4	20.00	-	-	-
OR5H1	0	genome.wustl.edu	37	3	97851916	97851916	+	Silent	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	97851916	97851916	C	T	SNP	OR5H1	ENST00000354565	human	ensembl	69_37n	+1	known	silent	c.375	p.A125	0.997	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_7TM_GPCR_Rhodpsn	pfam_7TM_GPCR_Rhodpsn,pfscan_GPCR_Rhodpsn_supfam,prints_Olfact_rcpt,prints_7TM_GPCR_Rhodpsn	-	no_errors	OR5H1	HGNC	ENSG00000231192	50	0	0.00	15	18	54.55	-	-	-
PHB2	0	genome.wustl.edu	37	12	7074852	7074852	+	Missense_Mutation	SNP	T	T	G			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	12	7074852	7074852	T	G	SNP	PHB2	ENST00000399433	human	ensembl	69_37n	-1	known	missense	c.896	p.K299T	0.982	NULL	pfam_Band_7,smart_Band_7,prints_Prohibitin	-	no_errors	PHB2	HGNC	ENSG00000215021	55	0	0.00	24	14	36.84	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178936094	178936094	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178936094	178936094	C	A	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.1636	p.Q546K	1.000	pfam_PInositide-3_kin_accessory_dom,superfamily_ARM-type_fold,smart_PInositide-3_kin_accessory_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	63	0	0.00	25	15	37.50	-	-	-
PIK3CA	0	genome.wustl.edu	37	3	178952018	178952018	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	3	178952018	178952018	A	G	SNP	PIK3CA	ENST00000263967	human	ensembl	69_37n	+1	known	missense	c.3073	p.T1025A	1.000	superfamily_Kinase-like_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	pfam_PInositide-3_kin_accessory_dom,pfam_PI3/4_kinase_cat_dom,pfam_PI3K_Ras-bd_dom,pfam_PI3K_C2_dom,pfam_PI3K_adapt-bd_dom,superfamily_Kinase-like_dom,superfamily_ARM-type_fold,superfamily_C2_Ca/lipid-bd_dom_CaLB,smart_PI3K_adapt-bd_dom,smart_PI3K_Ras-bd_dom,smart_PI3K_C2_dom,smart_PInositide-3_kin_accessory_dom,smart_PI3/4_kinase_cat_dom,pfscan_PI3/4_kinase_cat_dom	-	no_errors	PIK3CA	HGNC	ENSG00000121879	43	0	0.00	26	15	36.59	-	-	-
PRKACG	0	genome.wustl.edu	37	9	71628862	71628862	+	Silent	SNP	C	C	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	9	71628862	71628862	C	A	SNP	PRKACG	ENST00000377276	human	ensembl	69_37n	-1	known	silent	c.147	p.T49	0.984	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,smart_AGC-kinase_C,pfscan_Prot_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom	-	no_errors	PRKACG	HGNC	ENSG00000165059	57	0	0.00	36	15	29.41	-	-	-
PTGER4	0	genome.wustl.edu	37	5	40692393	40692393	+	Silent	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	40692393	40692393	C	T	SNP	PTGER4	ENST00000302472	human	ensembl	69_37n	+1	known	silent	c.1380	p.S460	0.000	NULL	pfam_7TM_GPCR_Rhodpsn,pfam_7TM_GPCR_serpentine_rcpt_Srx,pfscan_GPCR_Rhodpsn_supfam,prints_Prost_EP4_rcpt,prints_Prostanoid_rcpt,prints_7TM_GPCR_Rhodpsn,prints_Prostglndn_DP_rcpt	-	no_errors	PTGER4	HGNC	ENSG00000171522	21	0	0.00	11	10	47.62	-	-	-
RASGRF2	0	genome.wustl.edu	37	5	80338748	80338748	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	5	80338748	80338748	G	A	SNP	RASGRF2	ENST00000265080	human	ensembl	69_37n	+1	known	missense	c.341	p.R114H	1.000	pfam_Pleckstrin_homology,smart_Pleckstrin_homology,pfscan_Pleckstrin_homology	pfam_RasGRF_CDC25,pfam_Ras-like_Gua-exchang_fac_N,pfam_DH-domain,pfam_Pleckstrin_homology,superfamily_Ras_GEF_dom,superfamily_DH-domain,smart_Pleckstrin_homology,smart_DH-domain,smart_Ras-like_Gua-exchang_fac_N,smart_RasGRF_CDC25,pfscan_IQ_motif_EF-hand-BS,pfscan_Pleckstrin_homology,pfscan_DH-domain,pfscan_RasGRF_CDC25,pfscan_Ras-like_Gua-exchang_fac_N	-	no_errors	RASGRF2	HGNC	ENSG00000113319	80	0	0.00	39	22	36.07	-	-	-
RASIP1	0	genome.wustl.edu	37	19	49227977	49227977	+	Nonsense_Mutation	SNP	G	G	A			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	19	49227977	49227977	G	A	SNP	RASIP1	ENST00000222145	human	ensembl	69_37n	-1	known	nonsense	c.2368	p.R790*	1.000	pfam_Dil_domain,pfscan_Dilute	pfam_Dil_domain,pfam_Ras-assoc,superfamily_SMAD_FHA_domain,smart_Ras-assoc,pfscan_Dilute,pfscan_Ras-assoc	-	no_errors	RASIP1	HGNC	ENSG00000105538	41	0	0.00	13	12	46.15	-	-	-
SGSM2	0	genome.wustl.edu	37	17	2265513	2265513	+	Missense_Mutation	SNP	T	T	C			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	2265513	2265513	T	C	SNP	SGSM2	ENST00000268989	human	ensembl	69_37n	+1	known	missense	c.407	p.L136P	1.000	pfam_Run,smart_Run,pfscan_Run	pfam_Run,pfam_Rab-GTPase-TBC_dom,superfamily_Rab-GTPase-TBC_dom,smart_Run,smart_Rab-GTPase-TBC_dom,pfscan_Run,pfscan_Rab-GTPase-TBC_dom	-	no_errors	SGSM2	HGNC	ENSG00000141258	28	0	0.00	8	8	50.00	-	-	-
SNED1	0	genome.wustl.edu	37	2	241989250	241989250	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	2	241989250	241989250	C	T	SNP	SNED1	ENST00000401644	human	ensembl	69_37n	+1	novel	nonsense	c.724	p.R242*	0.960	pfam_EGF-like_dom,pfam_EGF_extracell,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	pfam_EGF-like_dom,pfam_EGF_extracell,pfam_EGF-like_Ca-bd,smart_EGF-like_Ca-bd,smart_EGF-like,pfscan_EG-like_dom	-	no_start_codon:pseudogene:no_stop_codon	SNED1	HGNC	ENSG00000162804	55	0	0.00	26	4	13.33	-	-	-
STX6	0	genome.wustl.edu	37	1	180971828	180971828	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	1	180971828	180971828	C	T	SNP	STX6	ENST00000258301	human	ensembl	69_37n	-1	known	missense	c.214	p.E72K	1.000	pfam_Syntaxin-6_N,superfamily_t-SNARE	pfam_Syntaxin-6_N,pfam_T_SNARE_dom,superfamily_t-SNARE,smart_T_SNARE_dom,pfscan_T_SNARE_dom	-	no_errors	STX6	HGNC	ENSG00000135823	76	0	0.00	56	25	30.86	-	-	-
TAOK1	0	genome.wustl.edu	37	17	27804712	27804712	+	Missense_Mutation	SNP	G	G	T			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	17	27804712	27804712	G	T	SNP	TAOK1	ENST00000261716	human	ensembl	69_37n	+1	known	missense	c.340	p.D114Y	1.000	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,superfamily_Kinase-like_dom,superfamily_Homeodomain-like,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	TAOK1	HGNC	ENSG00000160551	39	0	0.00	35	4	10.26	-	-	-
TNRC6B	0	genome.wustl.edu	37	22	40661715	40661715	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A1PE-01A-11D-A142-09	TCGA-EW-A1PE-10A-01D-A142-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	54377bac-8f52-4116-b7e5-b71a8a721ac4	e18ccc97-6ed5-48fb-85ce-6a9484ce18bd	22	40661715	40661715	A	G	SNP	TNRC6B	ENST00000454349	human	ensembl	69_37n	+1	known	missense	c.1481	p.N494S	1.000	NULL	pfam_Argonaute_hook_dom,superfamily_UBA-like	-	no_errors	TNRC6B	HGNC	ENSG00000100354	31	0	0.00	13	10	43.48	-	-	-
