Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
CCDC87	0	genome.wustl.edu	37	11	66359044	66359044	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	66359044	66359044	C	A	SNP	CCDC87	ENST00000333861	human	ensembl	69_37n	-1	known	missense	c.1443	p.M481I	0.988	NULL	pfam_Microtubule-assoc_MAP65_ASE1	-	no_errors	CCDC87	HGNC	ENSG00000182791	17	0	0.00	21	16	43.24	-	-	-
CRLS1	0	genome.wustl.edu	37	20	6017787	6017787	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	6017787	6017787	C	T	SNP	CRLS1	ENST00000378863	human	ensembl	69_37n	+1	known	nonsense	c.889	p.Q297*	1.000	NULL	pfam_CDP-OH_P_trans	-	no_errors	CRLS1	HGNC	ENSG00000088766	54	0	0.00	19	29	60.42	-	-	-
DYNC2H1	0	genome.wustl.edu	37	11	103090738	103090738	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	103090738	103090738	A	T	SNP	DYNC2H1	ENST00000398093	human	ensembl	69_37n	+1	known	missense	c.8927	p.D2976V	1.000	NULL	pfam_Dynein_heavy,pfam_Dynein_heavy_dom-2,pfam_Dynein_heavy_dom-1,pfam_ATPase_dyneun-rel_AAA,smart_AAA+_ATPase	-	no_errors	DYNC2H1	HGNC	ENSG00000187240	30	0	0.00	2	15	88.24	-	-	-
EFNB3	0	genome.wustl.edu	37	17	7611493	7611493	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	17	7611493	7611493	A	G	SNP	EFNB3	ENST00000226091	human	ensembl	69_37n	+1	known	missense	c.340	p.T114A	1.000	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	pfam_Ephrin,superfamily_Cupredoxin,prints_Ephrin	-	no_errors	EFNB3	HGNC	ENSG00000108947	8	0	0.00	16	9	36.00	-	-	-
FBXW10	0	genome.wustl.edu	37	17	18682399	18682399	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	17	18682399	18682399	A	G	SNP	FBXW10	ENST00000308799	human	ensembl	69_37n	+1	known	missense	c.2974	p.T992A	0.609	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_F-box_dom_cyclin-like,smart_WD40_repeat,prints_G-protein_beta_WD-40_rep,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	FBXW10	HGNC	ENSG00000171931	31	0	0.00	39	5	11.36	-	-	-
GARS	0	genome.wustl.edu	37	7	30662033	30662033	+	Missense_Mutation	SNP	A	A	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	7	30662033	30662033	A	T	SNP	GARS	ENST00000389266	human	ensembl	69_37n	+1	known	missense	c.1568	p.D523V	1.000	pfscan_aa-tRNA-synth_II,tigrfam_tRNA-synt_gly	pfam_aa-tRNA-synt_IIb_cons-dom,pfam_Anticodon-bd,pfam_WHEP-TRS,superfamily_Anticodon-bd,superfamily_S15_NS1_RNA-bd,pfscan_aa-tRNA-synth_II,pfscan_WHEP-TRS,prints_tRNA-synt_gly,tigrfam_tRNA-synt_gly	-	no_errors	GARS	HGNC	ENSG00000106105	41	0	0.00	37	32	46.38	-	-	-
GATA3	0	genome.wustl.edu	37	10	8115871	8115872	+	Frame_Shift_Del	DEL	TC	TC	-			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	TC	TC					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	10	8115871	8115872	TC	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	frame_shift_del	c.1220_1221	p.S408fs	1.000:0.767	pirsf_TF_GATA-1/2/3	pfam_Znf_GATA,smart_Znf_GATA,pirsf_TF_GATA-1/2/3,pfscan_Znf_GATA,prints_Znf_GATA	-	no_errors	GATA3	HGNC	ENSG00000107485	40	0	0.00	32	22	40.74	-	-	-
IFT140	0	genome.wustl.edu	37	16	1575310	1575310	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	16	1575310	1575310	G	A	SNP	IFT140	ENST00000426508	human	ensembl	69_37n	-1	known	missense	c.2786	p.T929M	1.000	NULL	pfam_WD40_repeat,superfamily_WD40_repeat_dom,superfamily_ARM-type_fold,smart_WD40_repeat,pfscan_WD40_repeat,pfscan_WD40_repeat_dom	-	no_errors	IFT140	HGNC	ENSG00000187535	12	0	0.00	8	8	50.00	-	-	-
LILRB3	0	genome.wustl.edu	37	19	54746380	54746380	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	19	54746380	54746380	C	T	SNP	LILRB3	ENST00000407860	human	ensembl	69_37n	-1	known	missense	c.61	p.V21M	0.000	NULL	smart_Ig_sub,smart_Ig_sub2,pfscan_Ig-like	-	no_errors	LILRB3	HGNC	ENSG00000204577	13	0	0.00	36	15	29.41	-	-	-
LRP1B	0	genome.wustl.edu	37	2	141259275	141259275	+	Missense_Mutation	SNP	T	T	G			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	2	141259275	141259275	T	G	SNP	LRP1B	ENST00000389484	human	ensembl	69_37n	-1	known	missense	c.8831	p.D2944A	1.000	superfamily_Growth_fac_rcpt,smart_EGF-like_Ca-bd,smart_EGF-like	pfam_LDrepeatLR_classA_rpt,pfam_LDLR_classB_rpt,pfam_EGF-like_dom,superfamily_Growth_fac_rcpt,superfamily_LDrepeatLR_classA_rpt,smart_LDrepeatLR_classA_rpt,smart_EGF-like,smart_EGF-like_Ca-bd,smart_LDLR_classB_rpt,pfscan_EG-like_dom,pfscan_LDrepeatLR_classA_rpt,pfscan_LDLR_classB_rpt	-	no_errors	LRP1B	HGNC	ENSG00000168702	57	0	0.00	13	51	78.46	-	-	-
NRCAM	0	genome.wustl.edu	37	7	107823285	107823285	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	7	107823285	107823285	C	T	SNP	NRCAM	ENST00000379028	human	ensembl	69_37n	-1	known	nonsense	c.2384	p.W795*	1.000	pfam_Fibronectin_type3,superfamily_Fibronectin_type3,smart_Fibronectin_type3,pfscan_Fibronectin_type3	pfam_Ig_I-set,pfam_Fibronectin_type3,pfam_Immunoglobulin,superfamily_Fibronectin_type3,smart_Ig_sub,smart_Ig_sub2,smart_Fibronectin_type3,pfscan_Fibronectin_type3,pfscan_Ig-like	-	no_errors	NRCAM	HGNC	ENSG00000091129	28	0	0.00	39	15	27.78	-	-	-
PLCG1	0	genome.wustl.edu	37	20	39795424	39795424	+	Silent	SNP	G	G	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	39795424	39795424	G	A	SNP	PLCG1	ENST00000244007	human	ensembl	69_37n	+1	known	silent	c.2226	p.E742	1.000	superfamily_PLC-like_Pdiesterase_TIM-brl,smart_SH2,pirsf_PLC-gamma,pfscan_SH2,prints_SH2	pfam_PLipase_C_PInositol-sp_X_dom,pfam_SH2,pfam_PLipase_C_Pinositol-sp_Y,pfam_Pleckstrin_homology,pfam_C2_Ca-dep,pfam_SH3_domain,pfam_SH3_2,pfam_PLipase_C_EF-hand-like,superfamily_PLC-like_Pdiesterase_TIM-brl,superfamily_C2_Ca/lipid-bd_dom_CaLB,superfamily_SH3_domain,smart_Pleckstrin_homology,smart_PLipase_C_PInositol-sp_X_dom,smart_SH2,smart_SH3_domain,smart_PLipase_C_Pinositol-sp_Y,smart_C2_Ca-dep,pirsf_PLC-gamma,pfscan_EF_HAND_2,pfscan_C2_membr_targeting,pfscan_Pleckstrin_homology,pfscan_SH2,pfscan_SH3_domain,pfscan_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_Pinositol-sp_Y,prints_Pinositol_PLipase_C,prints_SH2	-	no_errors	PLCG1	HGNC	ENSG00000124181	40	0	0.00	87	59	40.41	-	-	-
SAMSN1	0	genome.wustl.edu	37	21	15870837	15870837	+	Missense_Mutation	SNP	A	A	G			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	21	15870837	15870837	A	G	SNP	SAMSN1	ENST00000400566	human	ensembl	69_37n	-1	known	missense	c.845	p.I282T	1.000	pfam_SAM_2,pfam_SAM_type1,superfamily_SAM/pointed,smart_SAM,pfscan_SAM	pfam_rSAM/SH3_domain-containing,pfam_SAM_2,pfam_SAM_type1,pfam_SH3_2,superfamily_SAM/pointed,superfamily_SH3_domain,smart_SH3_domain,smart_SAM,pfscan_SAM	-	no_errors	SAMSN1	HGNC	ENSG00000155307	85	0	0.00	57	46	44.66	-	-	-
SEC61A2	0	genome.wustl.edu	37	10	12209886	12209886	+	RNA	SNP	G	G	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	10	12209886	12209886	G	A	SNP	SEC61A2	ENST00000495368	human	ensembl	69_37n	+1	known	rna	NULL	NULL	0.000	-	-	-	no_errors	SEC61A2	HGNC	ENSG00000065665	21	0	0.00	18	17	48.57	-	-	-
SERPING1	0	genome.wustl.edu	37	11	57365774	57365776	+	In_Frame_Del	DEL	CTG	CTG	-			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	CTG	CTG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	11	57365774	57365776	CTG	-	DEL	SERPING1	ENST00000278407	human	ensembl	69_37n	+1	known	in_frame_del	c.31_33	p.L14in_frame_del	1.000:1.000:1.000	NULL	pfam_Sepin_dom,superfamily_Sepin_dom,smart_Sepin_dom	-	no_errors	SERPING1	HGNC	ENSG00000149131	12	0	0.00	4	2	33.33	-	-	-
SHROOM4	0	genome.wustl.edu	37	X	50378351	50378351	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	X	50378351	50378351	C	T	SNP	SHROOM4	ENST00000289292	human	ensembl	69_37n	-1	known	missense	c.722	p.R241Q	0.000	NULL	pfam_ASD2,pfam_PDZ,superfamily_PDZ,smart_PDZ,pfscan_PDZ	-	no_errors	SHROOM4	HGNC	ENSG00000158352	28	0	0.00	19	11	36.67	-	-	-
TMC2	0	genome.wustl.edu	37	20	2591102	2591102	+	Missense_Mutation	SNP	C	C	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	2591102	2591102	C	A	SNP	TMC2	ENST00000358864	human	ensembl	69_37n	+1	known	missense	c.1451	p.P484H	1.000	NULL	pfam_TMC	-	no_errors	TMC2	HGNC	ENSG00000149488	63	0	0.00	74	53	41.73	-	-	-
TUBB1	0	genome.wustl.edu	37	20	57597974	57597974	+	Silent	SNP	G	G	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	57597974	57597974	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	+1	known	silent	c.132	p.L44	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,prints_Beta_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	25	0	0.00	279	48	14.68	-	-	-
TUBB1	0	genome.wustl.edu	37	20	57598598	57598598	+	Missense_Mutation	SNP	G	G	A			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	20	57598598	57598598	G	A	SNP	TUBB1	ENST00000217133	human	ensembl	69_37n	+1	known	missense	c.220	p.D74N	1.000	pfam_Tubulin_FtsZ_GTPase,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,smart_Tubulin_FtsZ_GTPase,prints_Epsilon_tubulin	pfam_Tubulin_FtsZ_GTPase,pfam_Tubulin/FtsZ_2-layer-sand-dom,pfam_Misato_II_myosin-like,superfamily_Tubulin_FtsZ_GTPase,superfamily_Tub_FtsZ_C,smart_Tubulin_FtsZ_GTPase,smart_Tubulin/FtsZ_2-layer-sand-dom,prints_Beta_tubulin,prints_Tubulin,prints_Epsilon_tubulin,prints_Delta_tubulin,prints_Gamma_tubulin,prints_Alpha_tubulin	-	no_errors	TUBB1	HGNC	ENSG00000101162	63	0	0.00	445	88	16.51	-	-	-
TYW3	0	genome.wustl.edu	37	1	75198992	75198992	+	Missense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	1	75198992	75198992	C	T	SNP	TYW3	ENST00000370867	human	ensembl	69_37n	+1	known	missense	c.64	p.R22W	1.000	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	pfam_tRNA_yW-synthesising,superfamily_tRNA_yW-synthesising	-	no_errors	TYW3	HGNC	ENSG00000162623	49	0	0.00	15	49	76.56	-	-	-
ZNF512	0	genome.wustl.edu	37	2	27822524	27822524	+	Nonsense_Mutation	SNP	C	C	T			TCGA-EW-A2FW-01A-11D-A17D-09	TCGA-EW-A2FW-10A-01D-A17D-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	b8b57c49-55b8-49e7-872f-c17f61f91560	a6331793-635f-4ef4-9dd6-38762efed301	2	27822524	27822524	C	T	SNP	ZNF512	ENST00000355467	human	ensembl	69_37n	+1	known	nonsense	c.352	p.Q118*	1.000	NULL	smart_Znf_C2H2-like,pfscan_Znf_C2H2	-	no_errors	ZNF512	HGNC	ENSG00000243943	62	0	0.00	69	10	12.66	-	-	-
