Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_Position	End_Position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	chromosome_name_WU	start_WU	stop_WU	reference_WU	variant_WU	type_WU	gene_name_WU	transcript_name_WU	transcript_species_WU	transcript_source_WU	transcript_version_WU	strand_WU	transcript_status_WU	trv_type_WU	c_position_WU	amino_acid_change_WU	ucsc_cons_WU	domain_WU	all_domains_WU	deletion_substructures_WU	transcript_error_WU	default_gene_name_WU	gene_name_source_WU	ensembl_gene_id	normal_ref_reads	normal_var_reads	normal_vaf	tumor_ref_reads	tumors_var_reads	tumor_vaf	EVS_EA	EVS_AA	EVS_All
AR	0	genome.wustl.edu	37	X	66943562	66943562	+	Missense_Mutation	SNP	T	T	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	X	66943562	66943562	T	A	SNP	AR	ENST00000374690	human	ensembl	69_37n	+1	known	missense	c.2642	p.L881Q	1.000	pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd	pfam_Andrgn_rcpt,pfam_Znf_hrmn_rcpt,pfam_Nucl_hrmn_rcpt_lig-bd_core,superfamily_Nucl_hormone_rcpt_ligand-bd,smart_Znf_hrmn_rcpt,smart_Nucl_hrmn_rcpt_lig-bd_core,prints_Andrgn_rcpt,prints_Znf_hrmn_rcpt,pfscan_Znf_hrmn_rcpt	-	no_errors	AR	HGNC	ENSG00000169083	39	0	0.00	35	8	18.60	-	-	-
ATP11C	0	genome.wustl.edu	37	X	138897073	138897073	+	Silent	SNP	A	A	G			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	X	138897073	138897073	A	G	SNP	ATP11C	ENST00000327569	human	ensembl	69_37n	-1	known	silent	c.399	p.N133	0.998	pfam_ATPase_P-typ_ATPase-assoc-dom,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	pfam_ATPase_P-typ_ATPase-assoc-dom,pfam_Dehalogen-like_hydro,superfamily_HAD-like_dom,superfamily_ATPase_cation_domN,tigrfam_ATPase_P-typ_Plipid-transl,tigrfam_ATPase_P-typ_ion-transptr	-	no_errors	ATP11C	HGNC	ENSG00000101974	94	0	0.00	41	24	36.92	-	-	-
C17orf99	0	genome.wustl.edu	37	17	76157073	76157073	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	76157073	76157073	G	A	SNP	C17orf99	ENST00000586999	human	ensembl	69_37n	+1	novel	missense	c.295	p.G99R	0.293	NULL	NULL	-	no_stop_codon:bad_bp_length_for_coding_region	C17orf99	HGNC	ENSG00000187997	46	0	0.00	34	29	46.03	-	-	-
CACNA1C	0	genome.wustl.edu	37	12	2797847	2797847	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	12	2797847	2797847	G	A	SNP	CACNA1C	ENST00000399634	human	ensembl	69_37n	+1	known	missense	c.6232	p.A2078T	0.193	NULL	pfam_Ion_trans_dom,pfam_VDCC_a1su_IQ,pfam_PKD1_2_channel,prints_VDCC_L_a1csu,prints_VDCCAlpha1,prints_VDCC_L_a1su	-	no_errors	CACNA1C	HGNC	ENSG00000151067	64	0	0.00	46	17	26.56	-	-	-
CARD14	0	genome.wustl.edu	37	17	78157880	78157880	+	Missense_Mutation	SNP	T	T	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	78157880	78157880	T	A	SNP	CARD14	ENST00000344227	human	ensembl	69_37n	+1	known	missense	c.518	p.L173Q	0.991	NULL	pfam_CARD,superfamily_DEATH-like,superfamily_PDZ,pfscan_CARD,pfscan_PDZ,pfscan_Guanylate_kin	-	no_errors	CARD14	HGNC	ENSG00000141527	37	0	0.00	41	34	45.33	-	-	-
CCDC60	0	genome.wustl.edu	37	12	119968836	119968836	+	Silent	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	12	119968836	119968836	C	T	SNP	CCDC60	ENST00000327554	human	ensembl	69_37n	+1	known	silent	c.1519	p.L507	0.972	NULL	NULL	-	no_errors	CCDC60	HGNC	ENSG00000183273	46	0	0.00	47	13	21.67	-	-	-
CD93	0	genome.wustl.edu	37	20	23066315	23066315	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	20	23066315	23066315	C	T	SNP	CD93	ENST00000246006	human	ensembl	69_37n	-1	known	missense	c.515	p.G172E	0.001	superfamily_C-type_lectin_fold,smart_C-type_lectin,pirsf_CD93/CD141	pfam_EGF-like_Ca-bd,pfam_EGF-like_dom,pfam_C-type_lectin,superfamily_C-type_lectin_fold,superfamily_MFS_dom_general_subst_transpt,smart_C-type_lectin,smart_EGF-like,smart_EGF-like_Ca-bd,pirsf_CD93/CD141,pfscan_EG-like_dom,pfscan_C-type_lectin	-	no_errors	CD93	HGNC	ENSG00000125810	48	0	0.00	24	11	31.43	-	-	-
CDH1	0	genome.wustl.edu	37	16	68855914	68855915	+	Frame_Shift_Ins	INS	-	-	G			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	16	68855914	68855915	-	G	INS	CDH1	ENST00000261769	human	ensembl	69_37n	+1	known	frame_shift_ins	c.1722_1723	p.A574fs	0.004:0.998	pfam_Cadherin,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin	pfam_Cadherin,pfam_Cadherin_cytoplasmic-dom,pfam_Cadherin_pro_dom,superfamily_Cadherin-like,smart_Cadherin,pfscan_Cadherin,prints_Cadherin	-	no_errors	CDH1	HGNC	ENSG00000039068	53	0	0.00	23	18	43.90	-	-	-
CHEK2	0	genome.wustl.edu	37	22	29130481	29130481	+	Missense_Mutation	SNP	C	C	G			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	22	29130481	29130481	C	G	SNP	CHEK2	ENST00000382580	human	ensembl	69_37n	-1	known	missense	c.229	p.D77H	1.000	superfamily_SMAD_FHA_domain	pfam_Prot_kinase_cat_dom,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_FHA_dom,superfamily_Kinase-like_dom,superfamily_SMAD_FHA_domain,smart_FHA_dom,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,pfscan_FHA_dom,pfscan_Prot_kinase_cat_dom	-	no_errors	CHEK2	HGNC	ENSG00000183765	40	0	0.00	18	12	40.00	-	-	-
CYP4X1	0	genome.wustl.edu	37	1	47497137	47497137	+	Missense_Mutation	SNP	T	T	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	1	47497137	47497137	T	A	SNP	CYP4X1	ENST00000371901	human	ensembl	69_37n	+1	known	missense	c.349	p.S117T	0.006	pfam_Cyt_P450,superfamily_Cyt_P450	pfam_Cyt_P450,superfamily_Cyt_P450,prints_Cyt_P450_E_grp-I,prints_Cyt_P450_E_grp-IV,prints_Cyt_P450,prints_Cyt_P450_E_grp-II	-	no_errors	CYP4X1	HGNC	ENSG00000186377	54	0	0.00	48	7	12.73	-	-	-
DBH	0	genome.wustl.edu	37	9	136509403	136509403	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	136509403	136509403	C	T	SNP	DBH	ENST00000393056	human	ensembl	69_37n	+1	known	missense	c.985	p.R329C	1.000	pfam_Cu2_ascorb_mOase_N,superfamily_PHM/PNGase_F_dom	pfam_Cu2_ascorb_mOase_N,pfam_DOMON_domain,superfamily_PHM/PNGase_F_dom,smart_DOMON_domain,pfscan_DOMON_domain,prints_Dopamine_b_mOase	-	no_errors	DBH	HGNC	ENSG00000123454	40	0	0.00	24	9	27.27	-	-	-
DPYD	0	genome.wustl.edu	37	1	98144721	98144721	+	Missense_Mutation	SNP	G	G	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	1	98144721	98144721	G	T	SNP	DPYD	ENST00000370192	human	ensembl	69_37n	-1	known	missense	c.780	p.S260R	1.000	pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD	pfam_Dihydroorotate_DH_1_2,pfam_Pyr_nucl-diS_OxRdtase_FAD/NAD,pfam_tRNA_hU_synthase,superfamily_Helical_ferredxn,prints_FAD_pyr_nucl-diS_OxRdtase,tigrfam_Dihydroorotate_DH	-	no_errors	DPYD	HGNC	ENSG00000188641	102	0	0.00	36	4	10.00	-	-	-
DST	0	genome.wustl.edu	37	6	56484354	56484354	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	6	56484354	56484354	G	A	SNP	DST	ENST00000370765	human	ensembl	69_37n	-1	known	missense	c.4478	p.A1493V	0.062	NULL	pfam_Plectin_repeat,pfam_Spectrin_repeat,superfamily_Ig/albumin-bd,smart_Spectrin/alpha-actinin,smart_Plectin_repeat	-	no_errors	DST	HGNC	ENSG00000151914	99	0	0.00	37	18	32.73	-	-	-
FLOT2	0	genome.wustl.edu	37	17	27207860	27207860	+	Silent	SNP	G	G	C			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	27207860	27207860	G	C	SNP	FLOT2	ENST00000394908	human	ensembl	69_37n	-1	known	silent	c.1119	p.A373	0.153	NULL	pfam_Band_7,smart_Band_7	-	no_errors	FLOT2	HGNC	ENSG00000132589	64	0	0.00	70	55	44.00	-	-	-
FREM2	0	genome.wustl.edu	37	13	39448667	39448667	+	Frame_Shift_Del	DEL	C	C	-			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	13	39448667	39448667	C	-	DEL	FREM2	ENST00000280481	human	ensembl	69_37n	+1	known	frame_shift_del	c.8225	p.V2743fs	0.997	NULL	pfam_Calx_beta,superfamily_Cadherin-like,smart_Calx_beta	-	no_errors	FREM2	HGNC	ENSG00000150893	62	0	0.00	17	2	10.53	-	-	-
GATA3	0	genome.wustl.edu	37	10	8111433	8111434	+	Splice_Site	DEL	CA	CA	-			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	CA	CA					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	10	8111433	8111434	CA	-	DEL	GATA3	ENST00000379328	human	ensembl	69_37n	+1	known	splice_site_del	c.925-3_925-2	e4-2	1.000:1.000	-	-	-	no_errors	GATA3	HGNC	ENSG00000107485	64	0	0	59	10	14.49	-	-	-
GFM1	0	genome.wustl.edu	37	3	158364565	158364565	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	3	158364565	158364565	C	T	SNP	GFM1	ENST00000486715	human	ensembl	69_37n	+1	known	missense	c.401	p.A134V	1.000	pfam_ProtSyn_GTP-bd,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	pfam_ProtSyn_GTP-bd,pfam_Transl_elong_EFG/EF2_IV,pfam_Transl_elong_EFG/EF2_C,pfam_Transl_elong_EFTu/EF1A_2,superfamily_Ribosomal_S5_D2-typ_fold,superfamily_Transl_elong_init/rib_B-barrel,superfamily_Elongation_fac_G/III/V,smart_Transl_elong_EFG/EF2_IV,smart_Transl_elong_EFG/EF2_C,prints_ProtSyn_GTP-bd,tigrfam_Transl_elong_EFG/EF2,tigrfam_Small_GTP-bd_dom	-	no_errors	GFM1	HGNC	ENSG00000168827	71	0	0.00	52	11	17.46	-	-	-
GRIA4	0	genome.wustl.edu	37	11	105769081	105769081	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	11	105769081	105769081	G	A	SNP	GRIA4	ENST00000282499	human	ensembl	69_37n	+1	known	missense	c.813	p.M271I	1.000	pfam_ANF_lig-bd_rcpt	pfam_ANF_lig-bd_rcpt,pfam_Iontro_glu_rcpt,pfam_Glu_rcpt_Glu/Gly-bd,pfam_SBP_bac_3,smart_Iontro_glu_rcpt,smart_Glu_rcpt_Glu/Gly-bd,prints_NMDA_rcpt	-	no_errors	GRIA4	HGNC	ENSG00000152578	130	0	0.00	49	10	16.95	-	-	-
HN1	0	genome.wustl.edu	37	17	73132263	73132263	+	Nonsense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	17	73132263	73132263	C	T	SNP	HN1	ENST00000356033	human	ensembl	69_37n	-1	known	nonsense	c.380	p.W127*	0.976	NULL	NULL	-	no_errors	HN1	HGNC	ENSG00000189159	47	0	0.00	46	7	13.21	-	-	-
MLXIPL	0	genome.wustl.edu	37	7	73021500	73021501	+	Frame_Shift_Del	DEL	TG	TG	-			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	TG	TG					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	7	73021500	73021501	TG	-	DEL	MLXIPL	ENST00000456640	human	ensembl	69_37n	-1	putative	frame_shift_del	c.425_424	p.Q142fs	0.001:0.040	NULL	NULL	-	no_start_codon:no_stop_codon:bad_bp_length_for_coding_region	MLXIPL	HGNC	ENSG00000009950	22	0	0.00	28	6	17.14	-	-	-
NBPF1	0	genome.wustl.edu	37	1	16889985	16889985	+	RNA	SNP	T	T	C			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	1	16889985	16889985	T	C	SNP	NBPF1	ENST00000392963	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.040	-	-	-	no_errors	NBPF1	HGNC	ENSG00000219481	18	0	0.00	17	5	22.73	-	-	-
NEFM	0	genome.wustl.edu	37	8	24771948	24771948	+	Silent	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	8	24771948	24771948	G	A	SNP	NEFM	ENST00000221166	human	ensembl	69_37n	+1	known	silent	c.642	p.S214	0.996	pfam_F,prints_Keratin_I	pfam_F,pfam_Intermed_filament_DNA-bd,superfamily_Prefoldin,prints_Keratin_I	-	no_errors	NEFM	HGNC	ENSG00000104722	20	0	0.00	25	19	43.18	-	-	-
PAPLN	0	genome.wustl.edu	37	14	73720553	73720553	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	14	73720553	73720553	G	A	SNP	PAPLN	ENST00000427855	human	ensembl	69_37n	+1	known	missense	c.1186	p.G396S	0.188	pfam_Thrombospondin_1_rpt,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,pfscan_Thrombospondin_1_rpt	pfam_Ig_I-set,pfam_ADAM_spacer1,pfam_Thrombospondin_1_rpt,pfam_Ig_V-set,pfam_Immunoglobulin,pfam_Prot_inh_Kunz-m,pfam_PLAC,superfamily_Prot_inh_Kunz-m,superfamily_Thrombospondin_1_rpt,smart_Thrombospondin_1_rpt,smart_Prot_inh_Kunz-m,smart_Ig_sub,smart_Ig_sub2,smart_Ig_V-set_subgr,prints_Peptidase_M12B_ADAM-TS,prints_Prot_inh_Kunz-m,pfscan_PLAC,pfscan_Thrombospondin_1_rpt,pfscan_Prot_inh_Kunz-m,pfscan_Ig-like	-	no_errors	PAPLN	HGNC	ENSG00000100767	68	0	0.00	46	10	17.86	-	-	-
PKD2L2	0	genome.wustl.edu	37	5	137230184	137230184	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	5	137230184	137230184	G	A	SNP	PKD2L2	ENST00000508883	human	ensembl	69_37n	+1	known	missense	c.410	p.R137H	0.986	pfam_PKD1_2_channel,prints_PKD_2	pfam_PKD1_2_channel,pfam_Ion_trans_dom,prints_PKD_2	-	no_errors	PKD2L2	HGNC	ENSG00000078795	69	0	0.00	53	9	14.52	-	-	-
PLCXD2	0	genome.wustl.edu	37	3	111432830	111432830	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	3	111432830	111432830	C	T	SNP	PLCXD2	ENST00000477665	human	ensembl	69_37n	+1	known	missense	c.721	p.R241C	0.150	superfamily_PLC-like_Pdiesterase_TIM-brl	pfam_PLipase_C_PInositol-sp_X_dom,superfamily_PLC-like_Pdiesterase_TIM-brl,smart_PLipase_C_PInositol-sp_X_dom,pfscan_PLipase_C_PInositol-sp_X_dom	-	no_errors	PLCXD2	HGNC	ENSG00000240891	42	0	0.00	27	7	20.59	-	-	-
RIN3	0	genome.wustl.edu	37	14	93118714	93118714	+	Silent	SNP	C	C	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	14	93118714	93118714	C	A	SNP	RIN3	ENST00000216487	human	ensembl	69_37n	+1	known	silent	c.1320	p.A440	0.000	NULL	pfam_VPS9,smart_SH2,smart_VPS9_subgr,pfscan_Ras-assoc,pfscan_SH2,pfscan_VPS9	-	no_errors	RIN3	HGNC	ENSG00000100599	37	0	0.00	19	4	17.39	-	-	-
ROR2	0	genome.wustl.edu	37	9	94495597	94495597	+	Silent	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	94495597	94495597	C	T	SNP	ROR2	ENST00000375708	human	ensembl	69_37n	-1	known	silent	c.744	p.P248	0.668	pirsf_Tyr_kinase_rcpt_ROR,pfam_Frizzled_dom,superfamily_Frizzled_dom,pfscan_Frizzled_dom	pirsf_Tyr_kinase_rcpt_ROR,pfam_Ser-Thr/Tyr_kinase_cat_dom,pfam_Prot_kinase_cat_dom,pfam_Kringle,pfam_Frizzled_dom,pfam_Ig_I-set,pfam_Immunoglobulin,pfam_Ig_V-set,superfamily_Kinase-like_dom,superfamily_Kringle-like,superfamily_Frizzled_dom,smart_Ig_sub,smart_Ig_sub2,smart_Kringle,smart_Ser/Thr_dual-sp_kinase_dom,smart_Tyr_kinase_cat_dom,prints_Ser-Thr/Tyr_kinase_cat_dom,pfscan_Frizzled_dom,pfscan_Kringle,pfscan_Prot_kinase_cat_dom,pfscan_Ig-like	-	no_errors	ROR2	HGNC	ENSG00000169071	59	0	0.00	57	35	38.04	-	-	-
SCAF8	0	genome.wustl.edu	37	6	155153526	155153526	+	Missense_Mutation	SNP	G	G	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	G	G					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	6	155153526	155153526	G	A	SNP	SCAF8	ENST00000367186	human	ensembl	69_37n	+1	known	missense	c.3011	p.R1004K	1.000	NULL	pfam_RNA_pol_II-bd,pfam_RRM_dom,superfamily_ENTH_VHS,smart_RNA_polymerase_II_lsu_CTD,smart_RRM_dom,pfscan_RRM_dom	-	no_errors	SCAF8	HGNC	ENSG00000213079	24	0	0.00	17	10	35.71	-	-	-
SDHAP2	0	genome.wustl.edu	37	3	195393030	195393030	+	RNA	SNP	A	A	G			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	A	A					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	3	195393030	195393030	A	G	SNP	SDHAP2	ENST00000429897	human	ensembl	69_37n	+1	known	rna	NULL	NULL	1.000	-	-	-	no_errors	SDHAP2	HGNC	ENSG00000215837	61	0	0.00	39	6	13.33	-	-	-
SLC7A5P1	0	genome.wustl.edu	37	16	21458336	21458337	+	RNA	INS	-	-	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	-	-					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	16	21458336	21458337	-	A	INS	SLC7A5P1	ENST00000520823	human	ensembl	69_37n	-1	known	rna	NULL	NULL	0.847:0.918	-	-	-	no_errors	SLC7A5P1	HGNC	ENSG00000180747	42	0	0.00	7	3	30.00	-	-	-
STRBP	0	genome.wustl.edu	37	9	125909224	125909224	+	Silent	SNP	T	T	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	T	T					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	9	125909224	125909224	T	A	SNP	STRBP	ENST00000348403	human	ensembl	69_37n	-1	known	silent	c.1248	p.P416	0.996	pfam_Ds-RNA-bd,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	pfam_DZF,pfam_Ds-RNA-bd,smart_DZF,smart_Ds-RNA-bd,pfscan_Ds-RNA-bd	-	no_errors	STRBP	HGNC	ENSG00000165209	110	0	0.00	76	9	10.59	-	-	-
USP8	0	genome.wustl.edu	37	15	50784950	50784950	+	Missense_Mutation	SNP	C	C	T			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	15	50784950	50784950	C	T	SNP	USP8	ENST00000307179	human	ensembl	69_37n	+1	known	missense	c.2287	p.R763W	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	27	0	0.00	30	9	23.08	-	-	-
USP8	0	genome.wustl.edu	37	15	50784955	50784955	+	Missense_Mutation	SNP	C	C	A			TCGA-OL-A66K-01A-11D-A29N-09	TCGA-OL-A66K-10A-01D-A29N-09	C	C					Unknown	Untested	Somatic	Phase_IV	WXS	none	1	dbGAP	Illumina GAIIx	6fc9000d-e958-4d57-aeef-fe948dfbd927	fa188ef9-cd0b-4db0-bd54-6a544ecef685	15	50784955	50784955	C	A	SNP	USP8	ENST00000307179	human	ensembl	69_37n	+1	known	missense	c.2292	p.N764K	1.000	NULL	pfam_Peptidase_C19,pfam_DUF1873,pfam_Rhodanese-like_dom,superfamily_Rhodanese-like_dom,superfamily_WW_Rsp5_WWP,pfscan_Rhodanese-like_dom,pfscan_Peptidase_C19	-	no_errors	USP8	HGNC	ENSG00000138592	26	0	0.00	24	13	35.14	-	-	-
