Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
MAGEC1	9947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	140994602	140994602	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005462	exon4	c.A1412T	p.E471V	CTTTTGAGGGTTT	.	95	21	76	0	.	.
GPS1	2873	hgsc.bcm.edu	37	17	80012466	80012466	+	Missense_Mutation	SNP	C	C	T	rs139982509		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_212492	exon4	c.C509T	p.T170M	AGGCCACGCGGAA	.	97	4	83	0	0.000	.
PI4KA	5297	hgsc.bcm.edu;bcgsc.ca	37	22	21153979	21153979	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_058004	exon15	c.C1800T	p.Y600Y	AGAGATGTAGAGC	.	45	4	29	0	.	.
DLL1	28514	hgsc.bcm.edu	37	6	170597856	170597856	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005618	exon3	c.G373T	p.E125X	GAGCTTCAATAAT	.	105	4	91	0	.	.
GREB1	9687	hgsc.bcm.edu	37	2	11735403	11735403	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014668	exon12	c.G1723T	p.E575X	CTTTCCGAGAGCC	.	99	4	57	0	.	.
CAV1	857	hgsc.bcm.edu	37	7	116199003	116199003	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CAV1,NS,neuroblastoma,0,1	CAV1	NM_001753	exon3	c.G199T	p.D67Y	TAGATTGACTTTG	.	42	3	29	0	.	0
SLC13A3	64849	hgsc.bcm.edu	37	20	45192078	45192078	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC13A3,NS,carcinoma,0,1	SLC13A3	NM_022829	exon12	c.C1607A	p.S536Y	TGTCCAGAGGCGA	.	43	2	45	0	.	0
MICALL1	85377	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	38323501	38323501	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_033386	exon9	c.G1549C	p.E517Q	TCGTCTGAGAGCG	.	54	5	41	0	.	.
ZNF208	7757	hgsc.bcm.edu;broad.mit.edu	37	19	22157034	22157034	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_007153	exon4	c.C802T	p.Q268X	CAGATTGGTTAAA	.	55	5	45	0	.	.
SCNN1A	6337	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	6471245	6471245	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001159576	exon3	c.C1024A	p.R342S	TGAAGCGGCAGGC	.	41	6	30	0	.	.
SHPRH	257218	hgsc.bcm.edu	37	6	146268687	146268687	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_173082	exon6	c.C1154A	p.A385D	ATCAGAGCCAAAA	.	52	3	67	0	.	.
TBC1D2B	23102	hgsc.bcm.edu	37	15	78305220	78305220	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TBC1D2B_ENST00000300584,colon,carcinoma,0,2	TBC1D2B_ENST00000300584	NM_144572	exon9	c.C2215A	p.L739I	CGAGGAGGACATT	.	36	2	22	0	.	0
CDK15	65061	hgsc.bcm.edu;bcgsc.ca	37	2	202672307	202672307	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001261435	exon2	c.A214G	p.R72G	AGTAAAAGGCCAC	.	79	4	59	0	.	.
GABRB3	2562	hgsc.bcm.edu	37	15	26812850	26812850	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GABRB3_ENST00000541819,rectum,carcinoma,-1,3	GABRB3_ENST00000541819	NM_021912	exon7	c.G713T	p.R238L	TTCAACCGAAAGC	.	46	2	36	0	.	-1
MAP3K1	4214	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	56178366	56178366	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005921	exon14	c.C3339T	p.F1113F	AGTGTTCACCCCA	.	57	6	41	0	.	.
KRTAP4-3	85290	hgsc.bcm.edu	37	17	39324095	39324095	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_033187	exon1	c.C330T	p.C110C	AGGCCTGCAGCAA	.	87	4	88	0	.	.
CCDC15	80071	hgsc.bcm.edu	37	11	124862504	124862504	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_025004	exon10	c.G2060T	p.R687I	AAGAAAGAGTGAG	.	82	4	48	0	.	.
CLDN16	10686	hgsc.bcm.edu	37	3	190106072	190106072	+	Missense_Mutation	SNP	G	G	A	rs201380153		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_006580	exon1	c.G164A	p.R55K	GGGCCAGGGCTGG	.	38	5	24	0	.	59
FAM193A	8603	hgsc.bcm.edu	37	4	2698243	2698243	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FAM193A,NS,NS,0,1	FAM193A	NM_001256667	exon17	c.C2623T	p.Q875X	TTGTTGCAGTTTA	.	80	4	70	0	.	0
SIGLEC16	400709	hgsc.bcm.edu	37	19	50475311	50475311	+	RNA	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	ACGCTCGGCACCC	.	68	8	34	0	.	.
NUMBL	9253	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	41183174	41183174	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_004756	exon7	c.G693A	p.G231G	AGGCCGCCCACCC	.	71	5	65	0	.	.
HLA-F	3134	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	29693309	29693309	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001098479	exon5	c.C972T	p.V324V	TGTGGTCGCTGCT	.	76	5	42	0	.	.
XIRP2	129446	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	168115754	168115754	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199143	exon11	c.G2797C	p.D933H	GGTTTTGATGCTC	.	56	8	58	0	.	.
ENTPD1-AS1	0	hgsc.bcm.edu	37	10	97582886	97582886	+	RNA	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	TTTAATCTGTCTC	.	77	4	49	0	.	.
SLC19A3	80704	hgsc.bcm.edu	37	2	228564115	228564115	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC19A3,NS,carcinoma,0,1	SLC19A3	NM_025243	exon3	c.A316G	p.M106V	CCTGCATGGTCTT	.	58	4	41	0	.	0
DNAJC2	27000	hgsc.bcm.edu;bcgsc.ca	37	7	102953518	102953518	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014377	exon16	c.C1667A	p.T556K	TCTTCTGTTGTCC	.	57	4	52	0	.	.
EML5	161436	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	89220900	89220900	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_183387	exon2	c.C313A	p.H105N	GTGTATGAACATC	.	110	11	89	0	.	.
CHRNB1	1140	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7357773	7357773	+	Silent	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_000747	exon8	c.T978C	p.S326S	CCTTAGTGTCGTG	.	39	5	27	0	.	.
PTPN14	5784	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	214557314	214557314	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005401	exon13	c.C1884T	p.L628L	GGCCGTGAGGGGC	.	33	7	16	0	.	.
SLC6A18	348932	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	1232354	1232354	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SLC6A18,NS,carcinoma,0,1	SLC6A18	NM_182632	exon2	c.G181A	p.V61I	CCCTACGTCATCG	.	53	4	46	0	.	0
CYTB	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	15591	15591	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	ENST00000361789	exon1	c.G845A	p.R282Q	TTCTCCGATCCGT	.	7	4	18	0	.	.
KYNU	8942	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	143799625	143799625	+	Missense_Mutation	SNP	C	C	G	rs147475752	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199241	exon15	c.C1282G	p.R428G	GACAAGCGGAATC	.	107	20	86	0	.	.
RNU6-76	100873777	hgsc.bcm.edu	37	16	33503759	33503759	+	RNA	SNP	T	T	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GCTTTCTCCTTCA	.	527	30	395	0	.	.
MUC1	4582	hgsc.bcm.edu	37	1	155161733	155161733	+	Missense_Mutation	SNP	G	G	C	rs113445744	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC1_ENST00000368395,extremity,malignant_melanoma,0,3	MUC1_ENST00000368395	NM_001204286	exon2	c.C427G	p.P143A	GGGCTGGGGGGGC	.	12	3	10	1	.	0
DOCK7	85440	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	63018485	63018485	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001271999	exon22	c.G2684A	p.R895Q	AGGCTTCGAGAAC	.	83	10	70	0	.	.
IL12RB2	3595	hgsc.bcm.edu	37	1	67787288	67787288	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	IL12RB2,NS,carcinoma,0,1	IL12RB2	NM_001559	exon3	c.C80T	p.A27V	CAGATGCGTGCAA	.	57	3	43	0	.	0
AFF4	27125	hgsc.bcm.edu	37	5	132228047	132228047	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	AFF4,right_upper_lobe,carcinoma,0,1	AFF4	NM_014423	exon13	c.G2446T	p.A816S	GCCCAGCGGGAGA	.	40	2	35	0	.	0
NFKB2	4791	hgsc.bcm.edu	37	10	104157319	104157319	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	NFKB2,NS,carcinoma,0,1	NFKB2	NM_001077494	exon8	c.G538T	p.E180X	GCCAAAGAACTGA	.	33	2	27	0	.	0
HYDIN	54768	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	71015307	71015307	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001270974	exon29	c.C4497T	p.P1499P	GTTCCTGGGGAGA	.	71	9	47	0	.	.
MAP3K11	4296	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65373425	65373425	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MAP3K11,NS,carcinoma,0,1	MAP3K11	NM_002419	exon7	c.G1731C	p.Q577H	CCCATTCTGGGCT	.	62	5	30	0	.	0
HTT	3064	hgsc.bcm.edu;bcgsc.ca	37	4	3213728	3213728	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002111	exon48	c.G6487T	p.A2163S	AAGAGTGCCCTTT	.	56	4	54	0	.	.
ADAMTS17	170691	hgsc.bcm.edu;bcgsc.ca	37	15	100802574	100802574	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_139057	exon5	c.C856A	p.L286M	GTAGCAGGACAAG	.	59	4	48	0	.	.
GSTK1	373156	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142960620	142960620	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GSTK1_ENST00000479303,NS,haematopoietic_neoplasm,0,4	GSTK1_ENST00000479303	NM_001143681	exon1	c.C14T	p.P5L	CCCTGCCGCGCAC	.	44	5	41	0	.	0
FAM205B	389715	hgsc.bcm.edu	37	9	34834808	34834808	+	RNA	SNP	A	A	G	rs525385	by2hit2allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	C9orf144,NS,carcinoma,0,1	C9orf144	.	.	.	.	CACCCAATTTGGC	.	46	3	57	2	.	0
KIAA0195	9772	hgsc.bcm.edu	37	17	73482012	73482012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014738	exon4	c.G205T	p.G69W	TGGCCGGGGGCCT	.	100	4	75	0	.	.
MUC5B	727897	hgsc.bcm.edu	37	11	1255536	1255536	+	Splice_Site	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002458	exon20	c.2478+1G>T	.	GGCTGTGTGAGTT	.	62	5	38	0	.	.
ZUFSP	221302	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	116957009	116957009	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_145062	exon10	c.G1723A	p.E575K	TCTTCTCGGCTGT	.	42	4	33	0	.	.
ADC	113451	hgsc.bcm.edu	37	1	33583665	33583665	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_052998	exon11	c.T1192C	p.F398L	TCCCCCTTTTGGG	.	96	4	46	0	.	.
RUNX2	860	hgsc.bcm.edu	37	6	45390463	45390463	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	RUNX2_ENST00000352853,NS,carcinoma,0,2	RUNX2_ENST00000352853	NM_001024630	exon3	c.G192A	p.Q64Q	GCAGCAGCAACAG	.	48	3	41	0	.	0
SSPO	23145	hgsc.bcm.edu	37	7	149503932	149503932	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_198455	exon60	c.C8756T	p.T2919M	AGTGTACGGGCTT	.	67	4	61	0	.	.
PCSK9	255738	hgsc.bcm.edu	37	1	55505552	55505552	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,7	.	NM_174936	exon1	c.A42G	p.P14P	GCTGCCACTGCTG	.	69	3	63	0	.	76
RSG1	79363	hgsc.bcm.edu	37	1	16563182	16563182	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_030907	exon1	c.C56T	p.A19V	CCCTCGGCACTCT	.	70	4	55	0	.	.
PCDHB8	56128	hgsc.bcm.edu	37	5	140559572	140559572	+	Missense_Mutation	SNP	T	T	C	rs17844504	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PCDHB8,NS,malignant_melanoma,0,1	PCDHB8	NM_019120	exon1	c.T1957C	p.C653R	CCTCCGTGCTCGG	.	98	5	72	0	.	0
GALNTL5	168391	hgsc.bcm.edu	37	7	151680104	151680104	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GALNTL5,NS,carcinoma,0,1	GALNTL5	NM_145292	exon4	c.G402A	p.P134P	CCTCCCGACTGCC	.	64	3	57	0	.	0
MGST1	4257	hgsc.bcm.edu	37	12	16516728	16516728	+	Splice_Site	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_145792	exon4	c.222-1G>T	.	TCCACAGAGCCCA	.	95	4	67	0	.	.
KIF21A	55605	hgsc.bcm.edu;bcgsc.ca	37	12	39752014	39752014	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001173463	exon8	c.C1181A	p.T394K	AGTCGTGTGATTT	.	90	4	72	0	.	.
DPF3	8110	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	73140954	73140954	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_012074	exon8	c.C865T	p.R289C	CAGAGCGTCCACA	.	58	5	48	0	.	.
RASA1	5921	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	86672323	86672323	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	RASA1_ENST00000456692,NS,carcinoma,0,2	RASA1_ENST00000456692	NM_002890	exon16	c.C2125T	p.R709X	CGTGTTCGAGCAC	.	123	25	114	0	.	0
DOCK1	1793	hgsc.bcm.edu;bcgsc.ca	37	10	128817096	128817096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001380	exon13	c.C1261T	p.P421S	ATCATGCCTGGTA	.	67	4	40	0	.	.
ABCC9	10060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	22089573	22089573	+	Silent	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005691	exon1	c.A36G	p.S12S	ATTATATGAAGAA	.	74	7	58	0	.	.
PKHD1	5314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	51921499	51921499	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_170724	exon18	c.C1690T	p.R564X	CACCTCGTTCAAA	.	82	13	55	0	.	.
SLC2A10	81031	hgsc.bcm.edu	37	20	45358084	45358084	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_030777	exon4	c.G1504T	p.G502C	ACAAAAGGCCAGT	.	75	4	41	0	.	.
TRUB1	142940	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	116734973	116734973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TRUB1,NS,carcinoma,0,1	TRUB1	NM_139169	exon8	c.G885A	p.W295X	CAAATGGACAATT	.	60	8	54	0	.	0
MLF1IP	79682	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	185638302	185638302	+	Silent	SNP	A	A	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_024629	exon5	c.T369A	p.I123I	TGCACTAATTTTT	.	48	4	46	0	.	.
CHID1	66005	hgsc.bcm.edu	37	11	884165	884165	+	Missense_Mutation	SNP	C	C	A	rs143837907	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CHID1,NS,carcinoma,0,1	CHID1	NM_001142676	exon10	c.G781T	p.D261Y	GCTGGTCGGTCCT	.	36	3	26	0	.	0
CXCR1	3577	hgsc.bcm.edu	37	2	219029811	219029811	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CXCR1,NS,carcinoma,0,1	CXCR1	NM_000634	exon2	c.G124A	p.V42M	TGATCACAACATA	.	29	2	24	0	.	0
PBK	55872	hgsc.bcm.edu	37	8	27690596	27690596	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PBK_ENST00000301905,colon,carcinoma,0,2	PBK_ENST00000301905	NM_018492	exon2	c.A35T	p.K12I	GATAATTTGCTTG	.	35	2	36	0	.	0
TSPAN16	26526	hgsc.bcm.edu;bcgsc.ca	37	19	11408920	11408920	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_012466	exon2	c.G172T	p.G58C	CACGTTGGCAACC	.	64	4	48	0	.	.
ZNF610	162963	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52852438	52852438	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001161427	exon3	c.G13A	p.E5K	TGTGATGAAGAAG	.	50	8	28	0	.	.
MUC12	10071	hgsc.bcm.edu	37	7	100634194	100634194	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC12,tonsil,carcinoma,0,1	MUC12	NM_001164462	exon2	c.C350G	p.A117G	CTTCAGCCTCAAT	.	118	6	84	0	.	0
CEL	1056	hgsc.bcm.edu	37	9	135947131	135947131	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CEL,caecum,carcinoma,0,1	CEL	NM_001807	exon11	c.C2251A	p.P751T	CAGATGCCTGCAG	.	48	2	51	0	.	0
AAK1	22848	hgsc.bcm.edu	37	2	69741753	69741753	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_014911	exon13	c.G1626A	p.Q542Q	CTGTTGCTGTTGT	.	41	4	40	0	.	.
BTN3A1	11119	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	26411341	26411341	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_007048	exon8	c.A969G	p.G323G	AGGGGGAGAGAGA	.	74	4	52	0	.	.
AKAP1	8165	hgsc.bcm.edu	37	17	55195744	55195744	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	AKAP1,middle_lobe,carcinoma,0,2	AKAP1	NM_001242902	exon10	c.G2503A	p.D835N	GAAGACGATGACC	.	46	2	26	0	.	0
CSF1R	1436	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	149450020	149450020	+	Silent	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005211	exon8	c.A1197G	p.R399R	CTCACATCGAAGG	.	38	5	30	0	.	.
PIP4K2C	79837	hgsc.bcm.edu	37	12	57994636	57994636	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_001146258	exon8	c.G856T	p.G286C	CTGCTAGGCATCC	.	43	2	23	0	.	50
SRSF6	6431	hgsc.bcm.edu	37	20	42088724	42088724	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SRSF6_ENST00000244020,caecum,carcinoma,0,3	SRSF6_ENST00000244020	NM_006275	exon4	c.C433T	p.R145X	AAGGAACGAACAA	.	38	2	43	0	.	0
ASCC1	51008	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	10	73956736	73956736	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001198799	exon6	c.C406T	p.Q136X	GATGCTGGCCAGT	.	108	11	75	0	.	.
SUPT6H	6830	hgsc.bcm.edu	37	17	27008381	27008381	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SUPT6H,NS,carcinoma,0,1	SUPT6H	NM_003170	exon12	c.G1457A	p.R486H	CTAGCCGCAAGAA	.	46	2	35	0	.	0
XIRP2	129446	hgsc.bcm.edu	37	2	168104887	168104887	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_152381	exon9	c.C6985T	p.L2329L	CCCTCACTGTCCA	.	93	4	51	0	.	.
FLNB	2317	hgsc.bcm.edu;bcgsc.ca	37	3	58095323	58095323	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001457	exon15	c.C2220T	p.S740S	AGGTAGCCATCCT	.	78	5	80	0	.	.
TTF1	7270	hgsc.bcm.edu	37	9	135277219	135277219	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TTF1,NS,lymphoid_neoplasm,0,1	TTF1	NM_007344	exon2	c.C990A	p.N330K	AGACTTGTTTTTA	.	40	10	22	1	.	0
SNX29	92017	hgsc.bcm.edu	37	16	12093200	12093200	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_032167	exon2	c.G54T	p.L18L	ACTGCTGGATGCA	.	63	3	46	0	.	.
SCN7A	6332	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	167269613	167269613	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_002976	exon21	c.A3433G	p.I1145V	TAGTGATCCATCC	.	94	11	84	0	.	.
DST	667	hgsc.bcm.edu	37	6	56464980	56464980	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_015548	exon26	c.C3712A	p.Q1238K	TCCCTTGGAGTTT	.	107	5	73	0	.	.
PKD1L1	168507	hgsc.bcm.edu	37	7	47876572	47876572	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PKD1L1,NS,carcinoma,0,1	PKD1L1	NM_138295	exon37	c.C5890A	p.L1964M	CGCACAGCAGGGA	.	45	2	36	0	.	0
N4BP2	55728	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	40122733	40122733	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_018177	exon9	c.A3002G	p.Q1001R	AAGAGCAAATGCC	.	52	11	55	0	.	.
PDE4DIP	9659	hgsc.bcm.edu	37	1	144879561	144879561	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PDE4DIP_ENST00000369356,NS,carcinoma,0,7	PDE4DIP_ENST00000369356	NM_014644	exon27	c.T3889C	p.C1297R	CCTCACACTCTGA	.	92	6	60	2	.	0
FBN2	2201	hgsc.bcm.edu	37	5	127714472	127714472	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FBN2_ENST00000508053,NS,carcinoma,0,1	FBN2_ENST00000508053	NM_001999	exon12	c.C1715A	p.A572E	ATGCATGCTTGCT	.	44	2	51	0	.	0
C20orf26	26074	hgsc.bcm.edu	37	20	20056250	20056250	+	Missense_Mutation	SNP	G	G	T	rs200143211	alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	C20orf26,caecum,carcinoma,0,1	C20orf26	NM_015585	exon6	c.G557T	p.R186L	ACGTTCGCAAAGC	.	46	2	44	0	.	0
PCDH20	64881	hgsc.bcm.edu	37	13	61986532	61986532	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	PCDH20_ENST00000409186,NS,carcinoma,0,2	PCDH20_ENST00000409186	NM_022843	exon2	c.G1700A	p.R567K	TGGCCTCTCTCCT	.	40	2	27	0	.	0
GALNT14	79623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	31168695	31168695	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001253826	exon8	c.C711T	p.N237N	GTCCAGGTTAATG	.	68	10	79	0	.	.
KCNJ14	3770	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	48967866	48967866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_013348	exon3	c.G1143T	p.Q381H	TAGTTTCCCCGGC	.	24	6	24	0	.	.
ANKRD32	84250	hgsc.bcm.edu	37	5	93966366	93966366	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ANKRD32_ENST00000265140,colon,carcinoma,0,1	ANKRD32_ENST00000265140	NM_032290	exon4	c.C349T	p.R117C	CTGAAACGCACTG	.	46	2	50	0	.	0
EZH2	2146	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	148523609	148523609	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001203247	exon8	c.C844A	p.H282N	GCGTATGAAAGGA	.	69	5	44	0	.	.
PRR11	55771	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	57247159	57247159	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_018304	exon2	c.G46A	p.E16K	AAAGCCGAAAGAT	.	138	11	101	0	.	.
MAN1C1	57134	hgsc.bcm.edu	37	1	26079974	26079974	+	Splice_Site	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MAN1C1,NS,carcinoma,0,1	MAN1C1	NM_020379	exon5	c.835-1G>T	.	TTTACAGGTGTTC	.	47	2	39	1	.	0
RNF212	285498	hgsc.bcm.edu	37	4	1087255	1087255	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001193318	exon4	c.C794A	p.A265E	CACCCTGCGTTTG	.	109	4	112	0	.	.
TMED8	283578	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	14	77810058	77810058	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_213601	exon4	c.C436T	p.L146L	CCCCCAGAAGATC	.	69	7	62	0	.	.
ELK1	2002	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47496463	47496463	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001114123	exon6	c.G1137C	p.W379C	GGTGCTCCAGAAG	.	55	6	30	0	.	.
CLCA2	9635	hgsc.bcm.edu	37	1	86913194	86913194	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CLCA2,NS,carcinoma,0,1	CLCA2	NM_006536	exon11	c.G1717T	p.G573W	CAGCCTGGGCACT	.	69	3	58	0	.	0
PIWIL2	55124	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	22145050	22145050	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001135721	exon7	c.G753T	p.V251V	CAATGTGGAGTGC	.	61	6	47	0	.	.
SV2A	9900	hgsc.bcm.edu	37	1	149879665	149879665	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	SV2A,colon,carcinoma,0,1	SV2A	NM_014849	exon9	c.C1473A	p.R491R	CTCTACGCGCTCC	.	41	2	32	0	.	0
ALPK3	57538	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	15	85401487	85401487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_020778	exon6	c.G4124C	p.R1375T	AGGTCAGAGCAGC	.	187	15	120	0	.	.
PRG4	10216	hgsc.bcm.edu	37	1	186276262	186276262	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_005807	exon7	c.A1411C	p.T471P	CCCACCACCAAGG	.	63	0	56	0	.	259
OR7A5	26659	hgsc.bcm.edu	37	19	14938184	14938184	+	Silent	SNP	A	A	G	rs200531878		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	OR7A5,NS,carcinoma,0,1	OR7A5	NM_017506	exon1	c.T870C	p.Y290Y	CAGACTATAGATA	.	75	3	53	0	0.001	0
ACACB	32	hgsc.bcm.edu	37	12	109644547	109644547	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ACACB,right_upper_lobe,carcinoma,0,1	ACACB	NM_001093	exon19	c.G2946T	p.Q982H	TGCCCAGCAGACA	.	50	2	48	0	.	0
ADAMTS18	170692	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	77353780	77353780	+	Missense_Mutation	SNP	G	G	A	rs147816593		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ADAMTS18,rectum,carcinoma,0,3	ADAMTS18	NM_199355	exon16	c.C2498T	p.A833V	CCTGGCGCGTACA	.	70	6	49	0	0.000	0
LFNG	3955	hgsc.bcm.edu	37	7	2552881	2552881	+	Silent	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	LFNG_ENST00000402506,caecum,carcinoma,0,2	LFNG_ENST00000402506	NM_001166355	exon2	c.A138G	p.T46T	ATGGACAGATGGA	.	38	5	28	0	.	0
TRHDE	29953	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	73015434	73015434	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_013381	exon15	c.A2443G	p.R815G	CTACGTAGAGAAG	.	47	7	46	0	.	.
RNR1	6052	hgsc.bcm.edu	37	MT	689	689	+	RNA	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GTAAGATTACACA	.	490	118	495	0	.	.
NES	10763	hgsc.bcm.edu	37	1	156642556	156642556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	NES,NS,haematopoietic_neoplasm,+1,1	NES	NM_006617	exon4	c.C1424A	p.S475Y	AAACTGGAGTGGT	.	39	3	49	0	.	+1
CEP95	90799	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	17	62533848	62533848	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_138363	exon20	c.C2417G	p.S806C	TCAGATCTCGGCT	.	76	6	75	0	.	.
TOX3	27324	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	16	52473515	52473515	+	Silent	SNP	C	C	T	rs374335680		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001080430	exon7	c.G1353A	p.Q451Q	TTGTTGCTGCTGC	.	48	4	34	0	.	.
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	167675119	167675119	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001122679	exon27	c.C7148T	p.T2383M	AGTACACGGCCTA	.	58	4	32	0	.	.
ZNF292	23036	hgsc.bcm.edu	37	6	87964852	87964852	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_015021	exon8	c.G1505T	p.G502V	GAGTTGGTGCTAA	.	64	3	38	0	.	.
TARBP1	6894	hgsc.bcm.edu	37	1	234569297	234569297	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_005646	exon14	c.C2253A	p.C751X	TAAATGGCAACGA	.	99	4	58	0	.	.
C2CD2	25966	hgsc.bcm.edu	37	21	43327232	43327232	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.,1	.	NM_015500	exon10	c.C1187A	p.P396H	GGGGGAGGGATGG	.	35	3	36	0	.	47
DFNB59	494513	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179318221	179318221	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001042702	exon2	c.G85A	p.D29N	GAAGCTGACAAAT	.	94	5	68	0	.	.
CDC27	996	hgsc.bcm.edu	37	17	45234357	45234357	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001114091	exon7	c.C764A	p.S255Y	TGTTTAGATAATA	.	120	4	79	0	.	.
DMXL2	23312	hgsc.bcm.edu	37	15	51809289	51809289	+	Missense_Mutation	SNP	C	C	T	rs199866251	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	DMXL2,colon,carcinoma,0,2	DMXL2	NM_001174117	exon14	c.G2512A	p.A838T	TTATTGCGTCGAG	.	87	3	80	0	.	0
TCHH	7062	hgsc.bcm.edu	37	1	152084627	152084627	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TCHH,NS,carcinoma,0,2	TCHH	NM_007113	exon3	c.G1066C	p.E356Q	CCTCCTCCTGCTC	.	36	4	19	1	.	0
TMEM178A	130733	hgsc.bcm.edu	37	2	39944386	39944386	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TMEM178,NS,malignant_melanoma,0,1	TMEM178	NM_152390	exon4	c.G889T	p.V297L	TCCACGGTATGAC	.	31	2	26	0	.	0
BGN	633	hgsc.bcm.edu;bcgsc.ca	37	X	152771327	152771327	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001711	exon4	c.G358T	p.V120F	GCCCTCGTCCTGG	.	53	4	35	0	.	.
SPTBN1	6711	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	54858390	54858390	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_003128	exon16	c.G3206T	p.R1069L	TCCTACGGGACTT	.	35	7	39	0	.	.
ARHGEF38	54848	hgsc.bcm.edu;broad.mit.edu	37	4	106552107	106552107	+	Nonsense_Mutation	SNP	C	C	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001242729	exon4	c.C561G	p.Y187X	AATCTACTGCTAT	.	50	5	43	0	.	.
CLNK	116449	hgsc.bcm.edu;bcgsc.ca	37	4	10560060	10560060	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_052964	exon8	c.C416A	p.S139Y	TCCTTGGAAATGG	.	91	4	82	0	.	.
PRMT7	54496	hgsc.bcm.edu	37	16	68355328	68355328	+	Splice_Site	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001184824	exon3	c.96-1G>T	.	TTTTTAGGTCATC	.	99	4	100	0	.	.
FCRLA	84824	hgsc.bcm.edu	37	1	161682007	161682007	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	FCRLA_ENST00000367959,NS,carcinoma,0,2	FCRLA_ENST00000367959	NM_001184866	exon5	c.G852T	p.Q284H	AGTGCAGGGTGAG	.	22	2	12	0	.	0
MARK4	57787	hgsc.bcm.edu;bcgsc.ca	37	19	45790748	45790748	+	Silent	SNP	G	G	T	rs112982501	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001199867	exon13	c.G1320T	p.T440T	CCCGACGAGCACG	.	70	4	63	0	.	.
LRRC71	149499	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156901798	156901798	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_144702	exon13	c.C1420T	p.L474F	AAGGTCCTTTTGC	.	76	8	52	0	.	.
KHK	3795	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	27310211	27310211	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_006488	exon1	c.G84A	p.S28S	GGACTCGGAGATA	.	61	18	59	0	.	.
APOB	338	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	21246522	21246522	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	APOB,NS,carcinoma,0,1	APOB	NM_000384	exon17	c.C2479A	p.L827I	AGTGAAGAAAAAA	.	84	10	64	0	.	0
LAMA4	3910	hgsc.bcm.edu	37	6	112510361	112510361	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	NM_001105206	exon7	c.C765A	p.C255X	TTCCAAGCATTCT	.	87	3	57	0	.	.
GLG1	2734	hgsc.bcm.edu	37	16	74502875	74502875	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	GLG1,NS,carcinoma,0,1	GLG1	NM_001145667	exon17	c.G2405A	p.R802H	TGCCTGCGGCACT	.	42	3	39	0	.	0
CROCCP2	0	broad.mit.edu	37	1	16957311	16957311	+	RNA	SNP	A	A	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GCCCCCACCCCCA	.	53	7	44	2	.	.
CROCCP3	0	broad.mit.edu	37	1	16812982	16812982	+	RNA	SNP	A	A	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CCTTCTAGTGGAG	.	51	8	38	1	.	.
OR2T12	127064	broad.mit.edu;bcgsc.ca	37	1	248458309	248458309	+	Missense_Mutation	SNP	G	G	A	rs138674715		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	OR2T12	NM_001004692	exon1	c.C572T	p.S191L	AAGACTGAAGTGT	.	83	12	64	0	G|1.000;A|0.000	113
.	0	broad.mit.edu	37	1	112810518	112810518	+	RNA	DEL	G	G	-	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	TTTTTTGACTGGT	.	159	14	101	0	.	.
OR10A5	144124	broad.mit.edu	37	11	6867462	6867462	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	OR10A5,NS,carcinoma,0,3	OR10A5	NM_178168	exon1	c.G549A	p.P183P	CAGCCCGCCTGTG	.	57	4	42	0	.	48
OR51A4	401666	broad.mit.edu	37	11	4967834	4967834	+	Missense_Mutation	SNP	C	C	G	rs201205025		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	OR51A4,colon,carcinoma,-1,1	OR51A4	NM_001005329	exon1	c.G497C	p.R166T	AAGTTTCTTAAAG	.	70	3	54	1	.	73
SLC43A3	29015	broad.mit.edu	37	11	57177487	57177487	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SLC43A3	NM_017611	exon12	c.C1168G	p.L390V	ACTGGAGAGGGAG	.	55	3	31	0	.	54
ANKRD33	341405	broad.mit.edu	37	12	52284827	52284827	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ANKRD33	NM_182608	exon5	c.C1097T	p.S366F	AGAGGTCCCCGTG	.	20	3	21	0	.	33
NAP1L1	4673	broad.mit.edu	37	12	76444323	76444323	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	NAP1L1	NM_004537	exon12	c.T1047A	p.D349E	ATCATCATCTTCA	.	70	3	60	0	.	33
ENOX1	55068	broad.mit.edu	37	13	43930059	43930059	+	Silent	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ENOX1_ENST00000261488,NS,carcinoma,-1,2	ENOX1	NM_017993	exon8	c.G819A	p.L273L	ACCTTTCAGCTTT	.	39	4	34	0	.	158
MIR548F5	26960	broad.mit.edu	37	13	36220028	36220028	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	TCATTAGAGACCC	.	44	3	35	0	.	.
.	0	broad.mit.edu	37	14	106304711	106304711	+	RNA	SNP	C	C	T	rs377697988		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GAGTGGCGGGTGT	.	81	7	89	0	.	.
JAG2	3714	broad.mit.edu	37	14	105612177	105612177	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	JAG2	NM_002226	exon23	c.A2843G	p.E948G	CCGCACTCCCCCC	.	94	3	73	1	.	69
OTX2	5015	broad.mit.edu	37	14	57269033	57269033	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	OTX2	NM_001270525	exon3	c.A314T	p.Q105L	TGTTGCTGTTGTT	.	54	5	44	0	.	47
.	0	broad.mit.edu	37	15	102304262	102304264	+	RNA	DEL	GCT	GCT	-	rs373408686		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CTCAGAGCTGCTG	.	85	9	57	8	.	.
WASH3P	0	broad.mit.edu	37	15	102506815	102506816	+	RNA	DEL	CC	CC	-	rs113122596		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	WASH3P	.	.	.	.	TCTCCACCTGGAG	.	121	18	103	10	CC|0.500;-|0.500	56
RRN3P2	0	broad.mit.edu	37	16	29088010	29088010	+	RNA	SNP	T	T	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	TGATTTTTTCAAT	.	198	6	152	0	.	.
KIF19	124602	broad.mit.edu	37	17	72340424	72340424	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	KIF19	NM_153209	exon6	c.G519T	p.E173D	GCGGGAGGACTCT	.	34	3	21	0	.	102
LRRC37A4P	0	broad.mit.edu	37	17	43587569	43587569	+	RNA	SNP	G	G	C	rs2667851		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CCGTCTGAAAAGA	.	100	3	70	1	G|1.000;|0.000	.
ROCK1	6093	broad.mit.edu	37	18	18608854	18608854	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ROCK1	NM_005406	exon10	c.C1094G	p.T365S	TTACTAGTATCAA	.	67	3	39	0	.	162
PRR22	163154	broad.mit.edu	37	19	5784655	5784655	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PRR22	NM_001134316	exon1	c.C17T	p.P6L	CAGAACGGTTTGG	.	30	3	14	0	.	25
CRIM1	51232	broad.mit.edu	37	2	36583501	36583503	+	In_Frame_Del	DEL	GCT	GCT	-	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	CRIM1	NM_016441	exon1	c.66_68del	p.22_23del	GCTGGGGCTGCTG	.	10	3	9	0	.	88
FAM126B	285172	broad.mit.edu	37	2	201846200	201846200	+	Silent	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	FAM126B	NM_173822	exon12	c.C1386A	p.G462G	TTGACTGCCATTT	.	52	3	44	1	.	34
RPL23AP7	0	broad.mit.edu	37	2	114369811	114369811	+	RNA	SNP	G	G	A	rs373861612		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	TCCTTCGCTTTCG	.	165	5	102	0	.	.
RPL23AP7	0	broad.mit.edu	37	2	114369818	114369818	+	RNA	SNP	G	G	A	rs201486476	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CTTTCGGTGCCAT	.	168	7	98	1	.	.
USP34	9736	broad.mit.edu	37	2	61484067	61484067	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	USP34	NM_014709	exon47	c.C6067A	p.Q2023K	CAGTTTGACTAAC	.	148	4	125	0	.	334
MUC4	4585	broad.mit.edu	37	3	195506007	195506007	+	Silent	SNP	G	G	A	rs71635085		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC4_ENST00000463781,NS,carcinoma,0,2	MUC4	NM_018406	exon2	c.C12444T	p.T4148T	AGGGATGGTGACA	.	134	10	79	1	G|1.000;|0.000	1505
LARP1B	55132	broad.mit.edu	37	4	129121738	129121738	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	LARP1B	NM_018078	exon17	c.T2227C	p.F743L	TGGTCCTTTTTCC	.	300	6	278	0	.	120
GTF2H2B	0	broad.mit.edu	37	5	69719461	69719461	+	RNA	DEL	T	T	-	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CTTTCCTTTTTTT	.	32	4	19	0	.	.
TRIO	7204	broad.mit.edu	37	5	14399006	14399006	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TRIO	NM_007118	exon30	c.G4441T	p.E1481X	AACATTGAGTCTC	.	82	3	70	0	.	305
ZDHHC11	79844	broad.mit.edu	37	5	825360	825360	+	Silent	SNP	T	T	C	rs201174878		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ZDHHC11	NM_024786	exon8	c.A942G	p.K314K	CTTGGCTTTGACT	.	47	4	48	1	T|0.999;C|0.001	97
C8orf34	116328	broad.mit.edu;bcgsc.ca	37	8	69621314	69621314	+	Splice_Site	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	C8orf34	NM_052958	exon9	c.G1327A	p.D443N	TCATTCGGTAAGT	.	34	4	39	0	.	170
NBN	4683	broad.mit.edu	37	8	90983510	90983510	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	NBN	NM_002485	exon6	c.C593A	p.P198Q	AGAGGTGGGTAAA	.	173	5	158	0	.	86
PCM1	5108	broad.mit.edu	37	8	17797227	17797227	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PCM1	NM_006197	exon6	c.G640A	p.D214N	ATTCGCGATTATA	.	101	4	106	0	.	120
PDP1	54704	broad.mit.edu;ucsc.edu	37	8	94935050	94935050	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PDP1	NM_001161780	exon3	c.G838A	p.D280N	GTTGGTGATCCTA	.	29	4	13	0	.	97
SCRIB	23513	broad.mit.edu	37	8	144887183	144887183	+	Splice_Site	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SCRIB	NM_015356	exon20	c.G2672A	p.G891D	AAGATGCCCTGCA	.	25	3	15	0	.	192
KCNV2	169522	broad.mit.edu	37	9	2718784	2718784	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	KCNV2	NM_133497	exon1	c.C1045T	p.Q349X	TACCTTCAGCTGC	.	51	3	36	0	.	72
MLLT3	4300	broad.mit.edu	37	9	20414346	20414346	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MLLT3,NS,carcinoma,0,7	MLLT3	NM_004529	exon5	c.C498T	p.S166S	GCTACTGCTGCTG	.	61	10	53	1	.	125
.	0	broad.mit.edu	37	9	66457314	66457314	+	RNA	SNP	G	G	C	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GTTGTGGAGCGAC	.	51	5	39	1	.	.
BCOR	54880	broad.mit.edu	37	X	39933623	39933623	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	BCOR	NM_001123385	exon4	c.C976A	p.P326T	CCCCCGGCAGGCC	.	32	4	21	0	.	351
FEN1	2237	ucsc.edu	37	11	61563066	61563066	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	FEN1	NM_004111	exon2	c.G233A	p.G78D	AGAACGGCATCAA	.	42	4	21	0	.	15
GXYLT1	283464	ucsc.edu;bcgsc.ca	37	12	42512938	42512938	+	Missense_Mutation	SNP	T	T	A	rs200822565		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	Q8IXV1_HUMAN,NS,carcinoma,0,4	GXYLT1	NM_173601	exon3	c.A350T	p.H117L	GCTAGATGCATTT	.	87	12	71	1	.	47
ADAMTS10	81794	ucsc.edu	37	19	8651483	8651483	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ADAMTS10	NM_030957	exon20	c.C2362A	p.L788I	CTTCGAGGCTCTG	.	32	4	23	0	.	132
MAGEC3	139081	ucsc.edu;bcgsc.ca	37	X	140984709	140984709	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MAGEC3	NM_138702	exon7	c.C1165A	p.Q389K	CTTCCCCAGAGTC	.	34	4	26	0	.	228
.	0	bcgsc.ca	37	2	202938380	202938380	+	Silent	SNP	C	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	CCGGGGCCACGGG	.	72	4	89	0	.	.
ABCA12	26154	bcgsc.ca	37	2	215851337	215851337	+	Silent	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	ABCA12,NS,carcinoma,0,1	ABCA12	NM_173076	exon28	c.C4092A	p.L1364L	CAGATTGAGGTTA	.	72	4	63	0	.	368
ANKRD28	23243	bcgsc.ca	37	3	15749477	15749477	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ANKRD28	NM_015199	exon14	c.G1411T	p.G471C	TGCAGCCTCTTTC	.	31	4	29	0	.	121
TLR9	54106	bcgsc.ca	37	3	52255277	52255277	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TLR9	NM_017442	exon2	c.C3055A	p.H1019N	AGAAGTGGTGGTT	.	23	4	36	0	.	72
ADAM29	11086	bcgsc.ca	37	4	175898005	175898005	+	Silent	SNP	C	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ADAM29	NM_001130703	exon4	c.C1329T	p.C443C	TTGTTGCAAAGAC	.	50	4	39	0	.	262
MUC21	394263	bcgsc.ca	37	6	30954572	30954572	+	Missense_Mutation	SNP	C	T	T	rs146037191	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC21,NS,malignant_melanoma,0,2	MUC21	NM_001010909	exon2	c.C620T	p.A207V	GTGGGGCCAGCAC	.	151	13	86	2	C|0.998;T|0.002	98
POLH	5429	bcgsc.ca	37	6	43581551	43581551	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	POLH	NM_006502	exon11	c.G1399T	p.G467C	GGAAGTGGCCCAG	.	44	4	36	0	.	54
AIG1	51390	bcgsc.ca	37	6	143382350	143382350	+	Splice_Site	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	AIG1	.	.	.	.	TCCCCAGTGATTG	.	58	4	42	0	.	24
MUC6	4588	bcgsc.ca	37	11	1016916	1016916	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MUC6	NM_005961	exon31	c.T5885C	p.L1962P	GTGGGTAGCCTGC	.	292	14	213	3	.	408
MUC6	4588	bcgsc.ca	37	11	1017307	1017307	+	Missense_Mutation	SNP	G	A	A	rs372717767	bycluster	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	MUC6_ENST00000421673,NS,carcinoma,0,2	MUC6	NM_005961	exon31	c.C5494T	p.P1832S	TGTGAGGGTGTGA	.	203	11	142	2	.	408
MUC2	4583	bcgsc.ca	37	11	1092845	1092845	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	MUC2	NM_002457	exon30	c.C4664T	p.T1555I	CCGGCACACAGAC	.	628	17	325	3	.	614
TMED2	10959	bcgsc.ca	37	12	124069354	124069354	+	Silent	SNP	C	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TMED2	NM_006815	exon1	c.C171T	p.I57I	GGACATCGACGTG	.	44	4	33	0	.	19
.	28446	bcgsc.ca	37	14	106653388	106653388	+	RNA	SNP	C	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	AATACACAGCCAT	.	61	8	56	0	.	.
ZCCHC14	23174	bcgsc.ca	37	16	87446484	87446484	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	ZCCHC14	NM_015144	exon12	c.C1432A	p.P478T	GCACAGGGAGAAC	.	41	4	30	0	.	87
TUBB1	81027	bcgsc.ca	37	20	57594614	57594614	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	TUBB1	NM_030773	exon1	c.G37A	p.G13S	CAGTGTGGCAACC	.	53	4	36	0	.	42
.	0	bcgsc.ca	37	22	16402212	16402212	+	RNA	SNP	C	T	T	rs201359212		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	.	.	.	.	.	GGAGGGCCTTATG	.	77	21	68	0	.	.
PKDREJ	10343	bcgsc.ca	37	22	46653730	46653730	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	PKDREJ	NM_006071	exon1	c.C5490A	p.D1830E	TTCTGGGTCAATG	.	48	4	50	0	.	195
SRPX2	27286	bcgsc.ca	37	X	99925824	99925824	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	.	SRPX2	NM_014467	exon11	c.G1238T	p.R413L	TCACTCGCTCCTA	.	50	4	32	0	.	41
CPXM2	119587	hgsc.bcm.edu	37	10	125601975	125601975	+	Missense_Mutation	SNP	G	G	T	rs17679897	bycluster;byfrequency;byhapmap;by1000genomes;alternate_allele	TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	CPXM2,NS,carcinoma,0,1	CPXM2	NM_198148	exon4	c.C543A	p.D181E	CGCTCCGTCATAA	.	52	3	36	0	.	0
TXNRD2	10587	hgsc.bcm.edu	37	22	19865952	19865952	+	Silent	SNP	G	G	A	novel		TCGA-3X-AAV9-01A-72D-A417-09	TCGA-3X-AAV9-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	dd621b60-9752-48be-967c-43ee49990150	0c81b1b7-c24e-4b40-a844-bf702966e4a1	TXNRD2,NS,carcinoma,0,1	TXNRD2	.	p.H428H	.	.	ATGGGCGTGATAG	.	31	2	34	0	.	0
