Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
RSC1A1	6248	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	15987540	15987540	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006511	exon1	c.1176delT	p.I392fs	AGTATTAAAGACC	.	38	14	41	0	.	.
ELF3	1999	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	201980321	201980334	+	Frame_Shift_Del	DEL	CAGCTCGGAGGACT	CAGCTCGGAGGACT	-	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	CAGCTCGGAGGACT	CAGCTCGGAGGACT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004433	exon2	c.56_69del	p.19_23del	GATGTACAGCTCG	.	29	10	28	0	.	.
FNBP4	23360	hgsc.bcm.edu;broad.mit.edu	37	11	47754203	47754203	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015308	exon11	c.G1706A	p.R569Q	CCTTCCCGCCAGT	.	98	4	69	0	.	.
SLC26A7	115111	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	92346590	92346590	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_134266	exon6	c.G710A	p.S237N	TGCTGAGCATTGT	.	158	68	62	0	.	.
UNC45B	146862	hgsc.bcm.edu	37	17	33504088	33504088	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	UNC45B,NS,carcinoma,0,1	UNC45B	NM_173167	exon16	c.C2084T	p.A695V	AGGCAGCCCACGC	.	47	2	28	0	.	0
SF3A2	8175	hgsc.bcm.edu	37	19	2248134	2248134	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007165	exon9	c.G984A	p.G328G	CTCTGGGGTCCAC	.	23	4	12	0	.	.
KATNAL2	83473	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	44579415	44579415	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_031303	exon2	c.C71T	p.T24I	CAGACACAGGTAC	.	60	23	45	0	.	.
ADAM32	203102	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	8	39114753	39114753	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_145004	exon19	c.C2053A	p.L685I	TGGCTTCTAGGTT	.	98	10	38	0	.	.
LCN12	286256	hgsc.bcm.edu	37	9	139846784	139846784	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_178536	exon1	c.G5T	p.R2M	GGATGAGGCTGCT	.	65	3	55	0	.	.
FTH1	2495	hgsc.bcm.edu	37	11	61734852	61734852	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	FTH1,NS,malignant_melanoma,0,1	FTH1	NM_002032	exon1	c.G46T	p.D16Y	CTGAGTCCTGGTG	.	43	2	22	0	.	0
APPL1	26060	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	3	57272144	57272144	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_012096	exon4	c.G285T	p.E95D	AGATGAGGTAAAC	.	71	4	57	0	.	.
PRSS58	136541	hgsc.bcm.edu;ucsc.edu	37	7	141954901	141954901	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001001317	exon4	c.C410A	p.T137N	CTCCAGGTAGAGA	.	26	4	11	0	.	.
ISYNA1	51477	hgsc.bcm.edu	37	19	18548727	18548727	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001170938	exon2	c.C63T	p.I21I	CGCCTCGATGGCC	.	27	4	13	0	.	.
GCNT1	2650	hgsc.bcm.edu	37	9	79117954	79117954	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GCNT1,NS,malignant_melanoma,0,2	GCNT1	NM_001490	exon4	c.G657T	p.M219I	TGGTATGGATTTT	.	43	2	37	0	.	0
POLR3B	55703	hgsc.bcm.edu	37	12	106853126	106853126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_018082	exon22	c.G2550T	p.Q850H	ACCACAGTACAAA	.	88	4	31	0	.	.
KCNU1	157855	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	36793039	36793039	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001031836	exon27	c.G3051T	p.V1017V	GTTTGTGATCACC	.	57	9	24	0	.	.
CPT1C	126129	hgsc.bcm.edu	37	19	50214055	50214055	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CPT1C,caecum,carcinoma,-1,1	CPT1C	NM_001199752	exon16	c.C1807T	p.R603W	ACGGTGCGGTCTT	.	33	2	25	0	.	-1
BBS2	583	hgsc.bcm.edu	37	16	56535283	56535283	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	BBS2,NS,carcinoma,+1,1	BBS2	NM_031885	exon10	c.C1207T	p.R403C	AAATGCGTAATTC	.	73	3	30	0	.	+1
TTC9B	148014	hgsc.bcm.edu	37	19	40722126	40722126	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TTC9B,NS,carcinoma,0,1	TTC9B	NM_152479	exon3	c.A664G	p.S222G	GGAGGCTGCAACG	.	37	2	27	0	.	0
XIRP2	129446	hgsc.bcm.edu	37	2	168099965	168099965	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	XIRP2,NS,carcinoma,0,2	XIRP2	NM_152381	exon9	c.A2063G	p.D688G	GGGGGGATGTCAA	.	40	3	14	0	.	0
SHKBP1	92799	hgsc.bcm.edu	37	19	41086736	41086736	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_138392	exon9	c.G738T	p.R246R	AGCCCGGGTGCAT	.	65	4	42	0	.	.
FBN2	2201	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	127641262	127641262	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001999	exon44	c.G5615T	p.G1872V	TAACTACCAGGAC	.	45	22	23	0	.	.
SCP2D1	140856	hgsc.bcm.edu	37	20	18794574	18794574	+	Silent	SNP	C	C	T	rs142475609		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	C20orf79,NS,malignant_melanoma,0,1	C20orf79	NM_178483	exon1	c.C115T	p.L39L	CTAGAGCTGTCAG	.	36	3	15	0	.	0
PLCB1	23236	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	8703060	8703060	+	Missense_Mutation	SNP	A	A	C	rs138851178	bycluster;alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015192	exon15	c.G1573C	p.E525Q	TCTTCAATGGATG	.	104	42	62	0	.	.
MRPS35	60488	hgsc.bcm.edu	37	12	27863845	27863845	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MRPS35,NS,neuroblastoma,0,1	MRPS35	NM_001190864	exon1	c.C69T	p.S23S	ATTCTCCACTGCC	.	73	3	30	0	.	0
KCNB2	9312	hgsc.bcm.edu;broad.mit.edu	37	8	73849914	73849914	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	KCNB2,NS,carcinoma,0,1	KCNB2	NM_004770	exon3	c.C2324T	p.A775V	TTTCAGCGCCTTG	.	28	3	9	0	.	0
RHOBTB3	22836	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	95099223	95099223	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_014899	exon7	c.T1060G	p.W354G	TTTCAGTGGGAAG	.	128	7	46	0	.	.
PBRM1	55193	hgsc.bcm.edu;broad.mit.edu	37	3	52651496	52651496	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PBRM1_ENST00000296302,NS,carcinoma,0,1	PBRM1_ENST00000296302	NM_018313	exon15	c.C1600T	p.R534X	GCTCTCGAGCTTC	.	24	3	20	0	.	0
CCDC102B	79839	hgsc.bcm.edu	37	18	66721302	66721302	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CCDC102B,NS,malignant_melanoma,0,2	CCDC102B	NM_001093729	exon10	c.G1470T	p.Q490H	GCTCCAGAGGTCT	.	41	2	36	0	.	0
NPY1R	4886	hgsc.bcm.edu	37	4	164246817	164246817	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	NPY1R,NS,carcinoma,0,1	NPY1R	NM_000909	exon3	c.C793T	p.L265L	AGAGCAGCATGAT	.	28	2	17	0	.	0
FRG1B	284802	hgsc.bcm.edu	37	20	29628423	29628423	+	RNA	SNP	T	T	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TCACTTTAAAGAT	.	174	7	103	0	.	.
CYP4B1	1580	hgsc.bcm.edu	37	1	47264867	47264867	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CYP4B1,NS,carcinoma,0,1	CYP4B1	NM_000779	exon1	c.G114A	p.T38T	GCAGACGTTGGCT	.	29	2	20	0	.	0
DAOA	267012	hgsc.bcm.edu;ucsc.edu	37	13	106142521	106142521	+	RNA	SNP	G	G	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TGTCTGGGACCCA	.	24	12	10	0	.	.
DPYSL4	10570	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	134006179	134006179	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006426	exon3	c.T146C	p.L49P	AAAACCTCATCGT	.	45	5	37	0	.	.
SF3A2	8175	hgsc.bcm.edu	37	19	2248149	2248149	+	Silent	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SF3A2,colon,carcinoma,0,1	SF3A2	NM_007165	exon9	c.T999C	p.A333A	CCCAGCTCCTGGA	.	24	7	13	1	.	0
TMEFF2	23671	hgsc.bcm.edu	37	2	192815056	192815056	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TMEFF2,colon,carcinoma,0,1	TMEFF2	NM_016192	exon10	c.C1106A	p.A369E	GTGGACGCTCTTG	.	35	2	18	0	.	0
KIAA0922	23240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	154525556	154525556	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001131007	exon25	c.T3392G	p.L1131W	CAGACTTGCCAGA	.	60	6	42	0	.	.
GANC	2595	hgsc.bcm.edu	37	15	42644326	42644326	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GANC,colon,carcinoma,0,1	GANC	NM_198141	exon24	c.C2734T	p.R912C	GAGGTCCGCATCA	.	19	2	19	0	.	0
TTN-AS1	100506866	hgsc.bcm.edu;ucsc.edu	37	2	179448317	179448317	+	RNA	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TATAATACTCAGC	.	44	24	20	0	.	.
CHL1	10752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	440009	440009	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006614	exon25	c.C3194G	p.T1065S	TAATGACTAAGAA	.	57	40	35	0	.	.
NEURL2	140825	hgsc.bcm.edu	37	20	44518856	44518856	+	RNA	SNP	A	A	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	ACACTGAGCCAGG	.	19	6	11	0	.	.
UBE3B	89910	hgsc.bcm.edu	37	12	109927743	109927743	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	UBE3B,bladder,carcinoma,+1,1	UBE3B	NM_001270451	exon8	c.G564T	p.A188A	ACCAGCGATGAAC	.	46	2	19	0	.	+1
WIZ	58525	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	15536231	15536231	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_021241	exon5	c.T1430G	p.L477R	AGGCTGAGCTCAC	.	41	16	13	0	.	.
FAM86FP	653113	hgsc.bcm.edu	37	12	8388423	8388423	+	RNA	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	ATAAACCATGACA	.	68	9	49	0	.	.
SCN4A	6329	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	62020345	62020345	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_000334	exon23	c.C4129T	p.Q1377X	GGCTCTGGTTGTC	.	27	5	17	0	.	.
FMNL1	752	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	43322776	43322776	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_005892	exon22	c.C2885T	p.T962M	GCAAGACGGCTCA	.	37	9	26	0	.	.
MMACHC	25974	hgsc.bcm.edu	37	1	45966021	45966021	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015506	exon1	c.C17T	p.A6V	AAGTCGCAGAGCT	.	88	4	45	0	.	.
VCP	7415	hgsc.bcm.edu	37	9	35060888	35060888	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007126	exon12	c.G1392A	p.L464L	TTCCCGCAGTGCT	.	85	3	45	0	.	.
CAPN12	147968	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39229091	39229091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_144691	exon7	c.G857A	p.G286D	ACGCAGCCCCATG	.	74	8	62	0	.	.
CHD6	84181	hgsc.bcm.edu	37	20	40161871	40161871	+	Silent	SNP	C	C	T	rs61756303		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_032221	exon3	c.G372A	p.P124P	CTCTTTCGGTTCT	.	100	4	46	0	.	.
NLRX1	79671	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	119050623	119050623	+	Silent	SNP	C	C	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024618	exon7	c.C1893G	p.L631L	GCTTCTCTCTGCC	.	19	7	17	0	.	.
ME1	4199	hgsc.bcm.edu	37	6	84061833	84061833	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ME1,mucosal,malignant_melanoma,0,1	ME1	NM_002395	exon4	c.C388A	p.R130R	GCCCTCGATCGTG	.	25	2	12	0	.	0
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52439916	52439916	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004656	exon10	c.A796C	p.T266P	GCTGTGTTACTCT	.	18	11	17	0	.	.
ELANE	1991	hgsc.bcm.edu	37	19	853306	853306	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001972	exon3	c.C269T	p.S90L	ACCTCTCGCGGCG	.	9	5	6	0	.	.
RPS6KA2	6196	hgsc.bcm.edu	37	6	166918040	166918040	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	RPS6KA2_ENST00000503859,NS,carcinoma,+1,2	RPS6KA2_ENST00000503859	NM_001006932	exon7	c.C544A	p.H182N	GGAGATGGTCTAA	.	38	2	27	0	.	+1
TSG101	7251	hgsc.bcm.edu	37	11	18536390	18536390	+	Splice_Site	SNP	T	T	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TSG101,NS,carcinoma,0,1	TSG101	NM_006292	exon5	c.194-2A>T	.	ATTACCTGAAAAA	.	84	4	45	0	.	0
PLXNA4	91584	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	131888134	131888134	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020911	exon11	c.G2343C	p.L781F	GACTGTCAACTCC	.	48	11	32	0	.	.
CSN1S2AP	286828	hgsc.bcm.edu	37	4	70939774	70939774	+	RNA	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AATTATGTAGAGA	.	71	4	35	0	.	.
RNU5F-1	26828	hgsc.bcm.edu	37	1	220269438	220269438	+	RNA	SNP	T	T	A	rs201594568		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TTTTTTTAAAACA	.	84	4	31	0	0.001	.
SF3A2	8175	hgsc.bcm.edu	37	19	2248143	2248143	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_007165	exon9	c.C993T	p.P331P	CCACCCCCCAGCT	.	25	7	12	0	.	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	52439930	52439930	+	Splice_Site	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	BAP1,colon,carcinoma,0,3	BAP1	NM_004656	exon11	c.784-2A>G	.	ATCAGCTAACAAC	.	20	12	16	0	.	0
RNF14	9604	hgsc.bcm.edu	37	5	141353306	141353306	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	RNF14,NS,carcinoma,0,1	RNF14	NM_001201365	exon3	c.C153T	p.S51S	TGTGAGCGGTTAG	.	95	4	48	0	.	0
SSX6	280657	hgsc.bcm.edu	37	X	47972356	47972356	+	RNA	SNP	A	A	C	rs201636851	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	GGTTTAACCCCAT	.	37	0	15	0	.	.
SNED1	25992	hgsc.bcm.edu	37	2	241979571	241979571	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SNED1,NS,carcinoma,0,1	SNED1	NM_001080437	exon7	c.C1125T	p.C375C	TGTGTGCCAGGCC	.	39	2	24	0	.	0
CTTNBP2NL	55917	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	112999056	112999056	+	Silent	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_018704	exon6	c.A942G	p.T314T	CCAAACAGAGAGT	.	20	4	15	0	.	.
YAF2	10138	hgsc.bcm.edu;bcgsc.ca	37	12	42555512	42555512	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001190979	exon4	c.C280T	p.P94S	TAGGAGGCACAAA	.	85	5	32	0	.	.
ISLR2	57611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	74425467	74425467	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ISLR2,NS,carcinoma,0,1	ISLR2	NM_001130138	exon4	c.G372A	p.A124A	GAGCGCGCTGCAG	.	15	4	17	0	.	0
ZNF99	7652	hgsc.bcm.edu;bcgsc.ca	37	19	22952120	22952120	+	Silent	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001080409	exon2	c.T10C	p.L4L	ATGTCAACGATCC	.	91	4	52	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195506579	195506579	+	Missense_Mutation	SNP	T	T	C	rs71291866	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.A11872G	p.T3958A	AGGAAGTGTCGGT	.	15	5	12	1	.	0
SRPR	6734	hgsc.bcm.edu	37	11	126134923	126134923	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	SRPR,NS,carcinoma,0,1	SRPR	NM_003139	exon11	c.A1456G	p.M486V	GCACCATGGTGCG	.	43	2	36	0	.	0
COL5A1	1289	hgsc.bcm.edu	37	9	137582891	137582891	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	COL5A1,NS,carcinoma,0,1	COL5A1	NM_000093	exon2	c.G243A	p.A81A	AGACGCGCAGCTC	.	41	3	22	0	.	0
SNORA71B	26776	hgsc.bcm.edu	37	20	37053904	37053904	+	RNA	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	GGGAAGCGCTTTC	.	76	4	39	0	.	.
ZCWPW1	55063	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	7	100014767	100014767	+	Missense_Mutation	SNP	G	G	A	rs370621347		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ZCWPW1,NS,carcinoma,0,1	ZCWPW1	NM_001258008	exon6	c.C401T	p.A134V	GGCTGGGCACAAG	.	67	4	35	0	.	0
GNA15	2769	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	3157762	3157762	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002068	exon6	c.A781G	p.I261V	GGGACTATCCTGG	.	113	7	64	0	.	.
KIAA1751	85452	hgsc.bcm.edu	37	1	1920371	1920371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	KIAA1751,NS,carcinoma,0,1	KIAA1751	NM_001080484	exon3	c.C109A	p.L37I	GTAGAAGACATTT	.	64	2	67	0	.	0
TRAF3IP1	26146	hgsc.bcm.edu	37	2	239242655	239242655	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015650	exon7	c.C1042T	p.R348X	AAACGGCGATCCA	.	94	3	59	0	.	.
FLG	2312	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	152283924	152283924	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002016	exon3	c.C3438T	p.H1146H	CTGCTCGTGGTGG	.	110	44	51	0	.	.
RNU6-76	100873777	hgsc.bcm.edu	37	16	33504517	33504517	+	RNA	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CGACAAAGTCATA	.	137	24	76	0	.	.
ADK	132	hgsc.bcm.edu;bcgsc.ca	37	10	76285055	76285055	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_006721	exon7	c.G597T	p.V199V	AAAGGTGGCTCAC	.	49	4	26	0	.	.
NCKAP1L	3071	hgsc.bcm.edu	37	12	54917650	54917650	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_005337	exon20	c.C2066A	p.T689K	CACTGACAATGAA	.	64	4	26	0	.	.
NUP210	23225	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	13383292	13383292	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024923	exon23	c.A3184C	p.N1062H	CTTTATTGGTCAC	.	32	19	25	0	.	.
ASPHD1	253982	hgsc.bcm.edu	37	16	29912808	29912808	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_181718	exon1	c.C516T	p.G172G	GGGTGGCCCAGGC	.	117	7	36	0	.	.
TMEM206	55248	hgsc.bcm.edu	37	1	212538674	212538674	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	TMEM206,colon,carcinoma,0,1	TMEM206	NM_001198862	exon9	c.C1119A	p.G373G	GAAGGCGCCACAG	.	40	2	6	0	.	0
CCDC96	257236	hgsc.bcm.edu	37	4	7044539	7044539	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_153376	exon1	c.C127A	p.L43M	ACTCCAGCTCCCC	.	19	4	10	0	.	.
DCP1B	196513	hgsc.bcm.edu	37	12	2062323	2062323	+	Silent	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.,4	.	NM_152640	exon7	c.A783G	p.Q261Q	CTTCTCTTGCTGC	.	35	2	15	0	.	63
CAMK1G	57172	hgsc.bcm.edu	37	1	209785272	209785272	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	CAMK1G,NS,malignant_melanoma,0,1	CAMK1G	NM_020439	exon11	c.C1051A	p.P351T	AGCTCCCCTGAGA	.	42	2	37	0	.	0
FMN2	56776	hgsc.bcm.edu;broad.mit.edu	37	1	240371625	240371625	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020066	exon5	c.G3513A	p.A1171A	CGGAGCGGGCATA	.	124	5	69	0	.	.
FMN2	56776	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	240374462	240374462	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020066	exon6	c.T3992A	p.L1331X	AGGAATTATTTTC	.	56	22	26	0	.	.
POLA2	23649	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	65046272	65046272	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002689	exon6	c.A533G	p.Q178R	TAGCACAGGGAGT	.	56	4	50	0	.	.
LRP1	4035	hgsc.bcm.edu;ucsc.edu	37	12	57586977	57586977	+	Missense_Mutation	SNP	G	G	A	rs143045870		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002332	exon46	c.G7574A	p.R2525Q	CTTGCCGAGCACA	.	24	11	13	0	0.000	.
LTN1	26046	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	30332965	30332965	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015565	exon12	c.G2365A	p.E789K	ATTTCTCACCAAG	.	74	31	50	0	.	.
RYR1	6261	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	39006851	39006851	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001042723	exon65	c.C9679T	p.R3227W	CGGGAGCGGGCCA	.	89	42	56	0	.	.
TNFRSF14	8764	hgsc.bcm.edu	37	1	2493248	2493248	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_003820	exon6	c.C688T	p.P230S	AGAAAGCCAAGGG	.	76	4	73	0	.	.
SLC24A1	9187	hgsc.bcm.edu	37	15	65918176	65918176	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.,1	.	NM_004727	exon2	c.C1758T	p.S586S	GGAGAGCCTGCTG	.	33	3	23	0	.	58
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	5	89999578	89999578	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_032119	exon35	c.T8252A	p.F2751Y	TCAATTTTGCTAA	.	124	6	74	0	.	.
PHIP	55023	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	79679836	79679836	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_017934	exon26	c.C3052G	p.L1018V	AGCAAAGGGTAGG	.	67	47	43	0	.	.
SPAG16	79582	hgsc.bcm.edu	37	2	214794782	214794782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024532	exon12	c.C1313T	p.A438V	GCCGCGCAGTGTG	.	81	4	59	0	.	.
PAX3	5077	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	223161877	223161877	+	Missense_Mutation	SNP	G	G	T	rs104893652	bycluster;alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_181457	exon2	c.C141A	p.N47K	CCTGCCGTTGATA	.	43	25	23	0	.	.
TTC14	151613	hgsc.bcm.edu	37	3	180320910	180320910	+	Splice_Site	SNP	A	A	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001042601	exon3	c.287-2A>T	.	TTTTTTAGATCAT	.	75	6	40	0	.	.
CLTCL1	8218	hgsc.bcm.edu	37	22	19213069	19213069	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001835	exon13	c.C2035A	p.L679I	GCTGAAGGTTCTG	.	26	4	17	0	.	.
CACNA1G-AS1	253962	hgsc.bcm.edu	37	17	48639364	48639364	+	RNA	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AGCTGGACGCCCT	.	108	3	66	0	.	.
C1orf198	84886	hgsc.bcm.edu	37	1	230979495	230979495	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	C1orf198,NS,carcinoma,0,1	C1orf198	NM_032800	exon3	c.G532A	p.A178T	CCAGGGCGTCCAG	.	48	3	14	0	.	0
IREB2	3658	hgsc.bcm.edu	37	15	78765723	78765723	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004136	exon8	c.G1023T	p.K341N	TACAAAGGTAAGT	.	84	3	60	0	.	.
TICAM1	148022	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	4816516	4816516	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_182919	exon2	c.C1874T	p.P625L	CACCCCGGCCAAG	.	48	24	23	0	.	.
ZFP1	162239	hgsc.bcm.edu	37	16	75203971	75203971	+	Missense_Mutation	SNP	G	G	T	rs375737032	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ZFP1,NS,carcinoma,0,1	ZFP1	NM_153688	exon4	c.G963T	p.E321D	GGGGGAGAAACGC	.	84	4	41	0	.	0
NID1	4811	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	1	236205367	236205367	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_002508	exon4	c.C978T	p.Y326Y	CACACTGTATGTG	.	24	10	10	0	.	.
ECI2	10455	hgsc.bcm.edu;broad.mit.edu	37	6	4133832	4133832	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	ECI2_ENST00000380118,NS,malignant_melanoma,0,2	ECI2_ENST00000380118	NM_206836	exon2	c.A164G	p.K55R	GGATCCTTTTTCA	.	89	4	45	1	.	0
YTHDC1	91746	hgsc.bcm.edu	37	4	69179995	69179995	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	YTHDC1,caecum,carcinoma,0,1	YTHDC1	NM_001031732	exon17	c.C2006A	p.A669D	ACAACAGCTTGTG	.	30	2	13	0	.	0
TRIM36	55521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	114506912	114506912	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001017397	exon2	c.A71G	p.D24G	CTCCAATCCGGCA	.	38	4	30	0	.	.
MPDZ	8777	hgsc.bcm.edu	37	9	13176150	13176150	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MPDZ_ENST00000541718,NS,carcinoma,0,2	MPDZ_ENST00000541718	NM_003829	exon20	c.C2916A	p.P972P	TGAATCGGGTAGC	.	59	3	34	0	.	0
ZDHHC17	23390	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	77208948	77208948	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_015336	exon6	c.A566G	p.N189S	ATCAGAATGGAAT	.	109	18	44	0	.	.
HID1	283987	hgsc.bcm.edu;bcgsc.ca	37	17	72950350	72950350	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_030630	exon14	c.C1747T	p.R583W	GTGTCCGCCGGCG	.	57	4	36	0	.	.
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	226447614	226447614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_020864	exon4	c.C1481T	p.T494I	TGAACACCTACGG	.	45	17	25	0	.	.
GCM1	8521	hgsc.bcm.edu	37	6	52993290	52993290	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	GCM1,rectum,carcinoma,0,1	GCM1	NM_003643	exon6	c.C1025A	p.P342Q	TCCAATGGAAGCT	.	56	3	24	0	.	0
ACTB	60	hgsc.bcm.edu	37	7	5567663	5567663	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001101	exon5	c.C956T	p.A319V	GCCAGGGCAGTGA	.	53	4	37	0	.	.
PCDHA4	56144	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140188641	140188641	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PCDHA4_ENST00000530339,NS,carcinoma,0,4	PCDHA4_ENST00000530339	NM_031500	exon1	c.C1869T	p.R623R	GTTCCGCGTGGGG	.	80	8	44	0	.	0
SLC22A4	6583	hgsc.bcm.edu	37	5	131630429	131630429	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_003059	exon1	c.G120T	p.V40V	AGTCGTGTTCCTG	.	47	4	19	0	.	.
PIK3CA	5290	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	178952085	178952085	+	Missense_Mutation	SNP	A	A	T	rs121913279	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	PIK3CA_ENST00000263967,NS,adenocarcinoma,0,2044	PIK3CA_ENST00000263967	NM_006218	exon21	c.A3140T	p.H1047L	ATGCACATCATGG	.	30	12	12	0	.	0
YARS	8565	hgsc.bcm.edu	37	1	33246690	33246690	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	YARS,caecum,carcinoma,0,1	YARS	NM_003680	exon10	c.C1099A	p.R367R	CCAGCCGGGATGG	.	50	2	34	0	.	0
AMBRA1	55626	hgsc.bcm.edu	37	11	46564499	46564499	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	AMBRA1_ENST00000458649,colon,carcinoma,0,2	AMBRA1_ENST00000458649	NM_001267783	exon8	c.G798A	p.S266S	CGTTGACGAGGCC	.	32	2	24	0	.	0
ATP13A3	79572	hgsc.bcm.edu	37	3	194167665	194167665	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_024524	exon13	c.C1488T	p.C496C	GTCAAAGCAAACA	.	86	4	22	0	.	.
STAB2	55576	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	104126866	104126866	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_017564	exon51	c.C5366T	p.A1789V	TCCATGCCCTACC	.	15	8	14	0	.	.
VAPB	9217	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57016107	57016107	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004738	exon5	c.C541A	p.Q181K	GAAGTTCAGAGGC	.	56	27	38	0	.	.
HAL	3034	hgsc.bcm.edu	37	12	96379885	96379885	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	HAL,NS,malignant_melanoma,0,2	HAL	NM_001258334	exon13	c.C1105T	p.R369W	GTGACCGAAACCG	.	58	4	35	0	.	0
OR13F1	138805	hgsc.bcm.edu	37	9	107267255	107267255	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001004485	exon1	c.T712C	p.F238L	AAAGCCTTTTCAA	.	52	4	32	0	.	.
OR2G2	81470	hgsc.bcm.edu	37	1	247752208	247752208	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	OR2G2,NS,carcinoma,0,1	OR2G2	NM_001001915	exon1	c.G547T	p.E183X	ATCTGCGAGGTCC	.	42	2	24	0	.	0
FAM65A	79567	hgsc.bcm.edu	37	16	67572725	67572725	+	Silent	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001193523	exon3	c.G315T	p.L105L	GGGCCTGACGTGA	.	97	4	57	0	.	.
POU4F2	5458	hgsc.bcm.edu	37	4	147560457	147560457	+	Silent	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_004575	exon1	c.T165C	p.G55G	TGGTGGTGGCGGC	.	16	0	6	0	.	.
ARID1A	8289	broad.mit.edu	37	1	27099298	27099318	+	Splice_Site	DEL	TGGAGCAGGAGCAATTCAGTT	TGGAGCAGGAGCAATTCAGTT	-	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ARID1A	NM_139135	exon14	c.3540_3555del	p.1180_1185del	TCACTCTGGAGCA	.	17	3	12	0	.	842
NBPF1	55672	broad.mit.edu	37	1	16892237	16892237	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TGAATAACATCTA	.	48	6	50	0	.	.
MIR548AP	0	broad.mit.edu	37	1	84259365	84259366	+	RNA	DEL	TT	TT	-	rs142355605	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AGGTCATTTTTTT	.	12	5	4	0	.	.
ARFGAP2	84364	broad.mit.edu	37	11	47188426	47188426	+	Missense_Mutation	SNP	C	C	T	rs200794218		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ARFGAP2	NM_032389	exon13	c.G1217A	p.R406Q	TCCCTCCGGTTTG	.	28	3	13	0	.	43
FAM111B	374393	broad.mit.edu	37	11	58893430	58893430	+	Silent	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	FAM111B	NM_198947	exon4	c.A1860G	p.V620V	TAATGTATACTGT	.	75	3	43	1	.	84
ORAI1	84876	broad.mit.edu	37	12	122079347	122079347	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ORAI1	NM_032790	exon2	c.C710T	p.A237V	AGGCAGCTGCCAT	.	47	3	42	0	.	66
IRF2BPL	64207	broad.mit.edu	37	14	77493648	77493650	+	In_Frame_Del	DEL	GCG	GCG	-	rs371633333	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	IRF2BPL	NM_024496	exon1	c.486_488del	p.162_163del	ACCGCAGCGGCGG	.	16	6	4	0	.	40
KHNYN	23351	broad.mit.edu	37	14	24900976	24900976	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	KHNYN	NM_015299	exon3	c.509delC	p.S170fs	TGCAGTCCCCGGG	.	6	2	17	0	.	46
DVL2	1856	broad.mit.edu	37	17	7129307	7129307	+	Silent	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	DVL2	NM_004422	exon15	c.G2088A	p.V696V	AGGCTGCACTGCT	.	32	3	26	0	.	49
POTEC	388468	broad.mit.edu	37	18	14513734	14513734	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	POTEC,NS,carcinoma,0,2	POTEC	NM_001137671	exon10	c.G1460A	p.G487E	GATATTCCAGTGT	.	401	4	183	1	.	129
LOC728323	0	broad.mit.edu	37	2	243037116	243037116	+	RNA	SNP	T	T	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	GAAGAATTGTGAA	.	85	9	35	1	.	.
ANKRD30BL	554226	broad.mit.edu	37	2	132919070	132919070	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ANKRD30BL	.	.	.	.	TTCTTCGCATCTC	.	74	6	38	1	.	36
ANKRD36BP2	0	broad.mit.edu;ucsc.edu	37	2	89076054	89076054	+	RNA	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AAAGTAGCCATAA	.	86	9	41	1	.	.
ANKRD36BP2	0	broad.mit.edu	37	2	89076056	89076056	+	RNA	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AGTAGCCATAAGA	.	86	5	42	1	.	.
.	400986	broad.mit.edu	37	2	96555601	96555601	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CAGAATTTTCCTT	.	138	7	83	0	.	.
BAGE	85319	broad.mit.edu	37	21	11066244	11066249	+	RNA	DEL	CAAAAA	CAAAAA	-	rs201145462	alternate_allele	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CCATCTCAAAAAC	.	6	2	5	0	.	.
ETV5	2119	broad.mit.edu	37	3	185798929	185798929	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ETV5	NM_004454	exon6	c.C268T	p.R90W	GCTCCCGTTTGAT	.	39	3	22	0	.	106
DPY19L2P2	0	broad.mit.edu	37	7	102825947	102825947	+	RNA	SNP	A	A	G	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CTTGACACTTGCC	.	69	5	26	0	.	.
.	0	broad.mit.edu	37	7	65948385	65948387	+	RNA	DEL	AAA	AAA	-	rs370057886		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	AACAACAAAAAAA	.	9	5	4	0	.	.
TUBBP5	0	broad.mit.edu	37	9	141069495	141069495	+	RNA	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TGGCCACGAGGGA	.	41	7	43	2	.	.
COX1	4512	broad.mit.edu	37	MT	6825	6825	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	ENST00000361624	exon1	c.G922A	p.A308T	ACCTCCGCTACCA	.	14	12	27	0	.	.
CNKSR2	22866	broad.mit.edu	37	X	21534642	21534642	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	CNKSR2	NM_001168647	exon9	c.G850C	p.E284Q	CTACGAGAGGACC	.	109	4	45	1	.	158
OBSCN	84033	ucsc.edu	37	1	228503595	228503595	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	OBSCN	NM_001271223	exon61	c.G15931T	p.G5311C	CTGGAGGGCGGCG	.	40	4	39	0	.	2142
ITGA8	8516	ucsc.edu	37	10	15649688	15649688	+	Silent	SNP	G	G	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ITGA8	NM_003638	exon17	c.C1752T	p.I584I	GTAAACGATGAAA	.	37	4	17	0	.	230
C2CD4A	145741	ucsc.edu;bcgsc.ca	37	15	62359940	62359940	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	C2CD4A	NM_207322	exon2	c.C128T	p.P43L	TCACTCCGGACCG	.	42	4	28	0	.	3
.	647696	bcgsc.ca	37	2	133020576	133020576	+	RNA	SNP	G	A	A	rs78170507		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CTATTAGGGCGAG	.	89	9	47	1	G|0.500;A|0.500	.
STRADB	55437	bcgsc.ca	37	2	202344886	202344886	+	Silent	SNP	C	T	T	rs146098224		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	STRADB	NM_018571	exon12	c.C1245T	p.Y415Y	CTCATACTGGGAA	.	81	7	39	0	.	33
.	0	bcgsc.ca	37	4	49552258	49552258	+	RNA	SNP	A	G	G	rs10440605		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TAGTGAACTACAA	.	241	42	152	7	.	.
MUC21	394263	bcgsc.ca	37	6	30954572	30954572	+	Missense_Mutation	SNP	C	T	T	rs146037191	bycluster	TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	MUC21,NS,malignant_melanoma,0,2	MUC21	NM_001010909	exon2	c.C620T	p.A207V	GTGGGGCCAGCAC	.	99	8	72	2	C|0.998;T|0.002	98
GARS	2617	bcgsc.ca	37	7	30662040	30662040	+	Silent	SNP	C	T	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	GARS	NM_002047	exon12	c.C1575T	p.C525C	TGAGTGCTACATT	.	58	4	41	0	.	52
ABCB1	5243	bcgsc.ca	37	7	87229482	87229482	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	ABCB1	NM_000927	exon3	c.C19A	p.R7S	CATTGCGGTCCCC	.	54	4	28	0	.	263
LOC642236	0	bcgsc.ca	37	9	68433564	68433564	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	CATTTTCCCCTAA	.	207	9	141	3	.	.
MIA2	117153	bcgsc.ca	37	14	39703322	39703322	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	MIA2	NM_054024	exon1	c.G4A	p.A2T	AGCATGGCAAAAT	.	52	4	57	0	.	82
.	0	bcgsc.ca	37	17	67945017	67945017	+	RNA	SNP	C	A	A	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	.	.	.	.	TTGGTGCAAATGT	.	71	6	43	0	.	.
XBP1	7494	bcgsc.ca	37	22	29195030	29195030	+	Silent	SNP	C	T	T	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	XBP1	.	.	.	.	TTTGACCTTAAGT	.	22	4	27	0	.	37
KIAA0922	23240	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	154525558	154525559	+	Missense_Mutation	DNP	CC	CC	AA	novel		TCGA-4G-AAZT-01A-11D-A417-09	TCGA-4G-AAZT-10A-01D-A41A-09	CC	CC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	24c3dc90-d1f2-4256-9909-0d0c939c178f	e75e6102-170d-49e4-89e6-7687cad1f6b6	.	.	NM_001131007	exon25	c.C3395A	p.P1132K	ACTTGCCAGAAAT	.	58	6	39	0	.	.
