Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
MLL2	8085	hgsc.bcm.edu	37	12	49426576	49426578	+	In_Frame_Del	DEL	TGC	TGC	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TGC	TGC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11911_11913del	p.3971_3971del	TGCTGTTGCTGCT	.	49	10	24	0	.	.
TP53	7157	hgsc.bcm.edu	37	17	7577579	7577580	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TP53_ENST00000545858,colon,carcinoma,0,21	TP53_ENST00000545858	NM_001126112	exon7	c.702_703insA	p.Y234_N235delinsX	GTAGTTGTAGTGG	.	18	10	33	0	.	0
FGFR2	2263	hgsc.bcm.edu	37	10	123278298	123278299	+	In_Frame_Ins	INS	-	-	GAA	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022970	exon8	c.985_986insTTC	p.N329delinsFN	TCACATTGAACAG	.	60	44	28	0	.	.
MLL2	8085	hgsc.bcm.edu	37	12	49426590	49426592	+	In_Frame_Del	DEL	AAA	AAA	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	AAA	AAA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11897_11899del	p.3966_3967del	CTGTTGAAACTGC	.	43	11	20	0	.	.
MLL2	8085	hgsc.bcm.edu	37	12	49426567	49426632	+	In_Frame_Del	DEL	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	TGCTGCTGTTGCTGCTGCTGTTGAAACTGCTGCTGTTGTTGTTGCTGTTGCTGTTGTAGCTGCTGT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003482	exon39	c.11857_11922del	p.3953_3974del	CCCATCTGCTGCT	.	54	0	24	0	.	.
ERBB4	2066	hgsc.bcm.edu	37	2	212251586	212251586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005235	exon27	c.C3473A	p.P1158H	TGTTTGGGTTTGT	.	94	4	72	0	.	.
C2CD3	26005	hgsc.bcm.edu;bcgsc.ca	37	11	73805030	73805030	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_015531	exon18	c.C3175A	p.P1059T	TGAAGGGCTTCAG	.	54	5	45	0	.	.
TBX1	6899	hgsc.bcm.edu	37	22	19752563	19752563	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TBX1_ENST00000359500,brain,atypical_teratoid-rhabdoid_tumour,0,3	TBX1_ENST00000359500	NM_080647	exon6	c.C767T	p.A256V	AATATGCCGAGGA	.	52	3	30	0	.	0
ADAMTS20	80070	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	43770341	43770341	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_025003	exon33	c.G5111A	p.C1704Y	GCATAACATTTCT	.	68	21	30	0	.	.
DAW1	164781	hgsc.bcm.edu	37	2	228771962	228771962	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_178821	exon10	c.G967T	p.A323S	GCTTCAGCTGATG	.	90	4	56	0	.	.
HOXB2	3212	hgsc.bcm.edu	37	17	46622342	46622342	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CCCCCCTCCTGCA	.	78	7	41	0	.	.
COX2	5743	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	7805	7805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	ENST00000361739	exon1	c.G220A	p.V74I	ATCCTAGTCCTCA	.	2179	787	355	1	.	.
NLRP5	126206	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	56515295	56515295	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_153447	exon2	c.C276T	p.T92T	ATCGACCACATGC	.	91	29	48	0	.	.
DNAJC3	5611	hgsc.bcm.edu	37	13	96412357	96412357	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DNAJC3,NS,carcinoma,0,1	DNAJC3	NM_006260	exon6	c.C610A	p.P204T	GGAGAACCTAGGA	.	46	2	55	0	.	0
MTSS1	9788	hgsc.bcm.edu	37	8	125568538	125568538	+	Missense_Mutation	SNP	C	C	T	rs371399134		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MTSS1,lower_third,carcinoma,0,1	MTSS1	NM_014751	exon12	c.G1339A	p.G447S	GTGGGCCGCTGGC	.	37	3	32	0	.	0
FBN3	84467	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	8191217	8191217	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_032447	exon20	c.C2569T	p.R857W	AGCCCCGGGCACA	.	110	44	60	0	.	.
TG	7038	hgsc.bcm.edu;bcgsc.ca	37	8	133885348	133885348	+	Missense_Mutation	SNP	G	G	T	rs370188499	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003235	exon5	c.G520T	p.G174W	CTCCACGGGGTGG	.	46	4	29	0	.	.
KLK14	43847	hgsc.bcm.edu;bcgsc.ca	37	19	51585890	51585890	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022046	exon3	c.C30A	p.T10T	GGGCCAGGTCCTG	.	83	5	56	0	.	.
ATN1	1822	hgsc.bcm.edu	37	12	7043191	7043191	+	Silent	SNP	G	G	T	rs147637415	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001007026	exon2	c.G27T	p.S9S	AGACTCGGTGAGT	.	69	4	47	0	.	.
PSORS1C1	170679	hgsc.bcm.edu	37	6	31106500	31106500	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,2	.	NM_014068	exon5	c.T111C	p.R37R	AACTCGTCCCCCC	.	66	4	54	0	.	11
ZNF329	79673	hgsc.bcm.edu	37	19	58639391	58639391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024620	exon4	c.C1480A	p.Q494K	AGTTCTGCTTGAA	.	75	4	29	0	.	.
OR6C3	254786	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	55725675	55725675	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_054104	exon1	c.C191A	p.S64Y	ACTTCTCTTTCTT	.	81	33	36	0	.	.
CNTNAP2	26047	hgsc.bcm.edu	37	7	147964169	147964169	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_014141	exon21	c.C3426T	p.S1142S	TTCATCCGACACC	.	69	4	38	0	.	.
VAV3	10451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	108247684	108247684	+	Splice_Site	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006113	exon17	c.1503-1G>T	.	TTAGACCTAAAAA	.	65	25	34	0	.	.
GALNT11	63917	hgsc.bcm.edu	37	7	151818669	151818669	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022087	exon12	c.C1734T	p.C578C	ACAGTGCCTGAGA	.	64	5	20	0	.	.
IDH1	3417	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	209113113	209113113	+	Missense_Mutation	SNP	G	G	A	rs121913499	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	IDH1,NS,haematopoietic_neoplasm,0,788	IDH1	NM_005896	exon4	c.C394T	p.R132C	CATGACGACCTAT	.	79	41	35	0	.	0
WNT5A	7474	hgsc.bcm.edu	37	3	55504231	55504231	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	WNT5A,NS,carcinoma,0,1	WNT5A	NM_003392	exon5	c.C1032A	p.Y344X	CTGGTCGTAGCCA	.	45	2	52	1	.	0
LAMC3	10319	hgsc.bcm.edu	37	9	133942411	133942411	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	LAMC3,NS,carcinoma,0,1	LAMC3	NM_006059	exon14	c.C2412A	p.P804P	GCACCCCCAGCCC	.	47	3	39	0	.	0
ZNRD1-AS1	80862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	6	30025956	30025956	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GATGTACCCCAGG	.	56	28	69	0	.	.
MUC16	94025	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	9072960	9072960	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024690	exon3	c.A14486G	p.N4829S	ACTGTGTTTATGG	.	110	38	20	0	.	.
POTEF	728378	hgsc.bcm.edu	37	2	130832762	130832762	+	Silent	SNP	T	T	C	rs2599797		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	POTEF,NS,carcinoma,0,1	POTEF	NM_001099771	exon17	c.A2283G	p.K761K	GCCTCTTTTGCTC	.	98	8	51	0	.	0
ZNF547	284306	hgsc.bcm.edu	37	19	57888521	57888521	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_173631	exon4	c.G177T	p.E59D	GGATGAGGAGGCA	.	58	4	31	0	.	.
VCAM1	7412	hgsc.bcm.edu;bcgsc.ca	37	1	101186235	101186235	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	VCAM1,NS,carcinoma,0,1	VCAM1	NM_001078	exon2	c.G268A	p.E90K	GGGAACGAACACT	.	75	4	45	0	.	0
HLA-B	3106	hgsc.bcm.edu	37	6	31322910	31322910	+	Missense_Mutation	SNP	G	G	A	rs74189305	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HLA-B,NS,carcinoma,-1,4	HLA-B	NM_005514	exon5	c.C986T	p.A329V	ATCACAGCAGCGA	.	54	3	46	2	.	-1
RPUSD4	84881	hgsc.bcm.edu;bcgsc.ca	37	11	126079517	126079517	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001144827	exon3	c.G456A	p.L152L	CTTGTCCAGCCGG	.	47	4	40	0	.	.
ZMYM6	9204	hgsc.bcm.edu	37	1	35472571	35472571	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_007167	exon12	c.C1794A	p.D598E	AAGACAGTCATTC	.	94	4	104	0	.	.
ATM	472	hgsc.bcm.edu	37	11	108205808	108205808	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	ATM_ENST00000278616,colon,carcinoma,0,2	ATM_ENST00000278616	NM_000051	exon55	c.A8123T	p.D2708V	GTTCCGATGGCAA	.	73	3	53	0	.	0
FRY	10129	hgsc.bcm.edu	37	13	32653148	32653148	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_023037	exon2	c.G248T	p.R83L	AGATTCGTATCAT	.	54	4	70	0	.	.
TMED2	10959	hgsc.bcm.edu;bcgsc.ca	37	12	124071376	124071376	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006815	exon2	c.G263T	p.G88V	TGGATGGAACATA	.	91	4	55	0	.	.
MLLT10P1	140678	hgsc.bcm.edu	37	20	29637755	29637755	+	RNA	SNP	A	A	G	rs138209891	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CTATTAATATTAT	.	73	3	31	0	.	.
PPL	5493	hgsc.bcm.edu	37	16	4935049	4935049	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PPL,NS,carcinoma,0,2	PPL	NM_002705	exon22	c.C3607A	p.R1203R	CACCCCGGTACTT	.	18	2	15	0	.	0
MRGPRX1	259249	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	18955600	18955600	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_147199	exon1	c.G732A	p.V244V	CCTGTCCACGTGG	.	92	27	55	0	.	.
MLLT10P1	140678	hgsc.bcm.edu	37	20	29638070	29638070	+	RNA	SNP	T	T	G	rs2313018		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TAACATTTTGATT	.	77	5	36	0	.	.
C3P1	388503	hgsc.bcm.edu	37	19	10153492	10153492	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ATCGAAGTAAAGA	.	48	4	37	0	.	.
SLFN11	91607	hgsc.bcm.edu;bcgsc.ca	37	17	33690820	33690820	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_152270	exon2	c.G7A	p.A3T	GATTTGCCTCCAT	.	84	4	35	0	.	.
AAK1	22848	hgsc.bcm.edu	37	2	69741780	69741780	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	AAK1_ENST00000409085,NS,carcinoma,0,2	AAK1_ENST00000409085	NM_014911	exon13	c.G1599C	p.Q533H	CTGCTGCTGGTAG	.	72	6	47	0	.	0
TSNARE1	203062	hgsc.bcm.edu	37	8	143436077	143436077	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_145003	exon2	c.C9A	p.Y3X	GGATCCGTATGAC	.	61	4	47	0	.	.
LINC00473	90632	hgsc.bcm.edu	37	6	166355810	166355810	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ATGCGCACACACA	.	55	6	48	0	.	.
C1orf172	126695	hgsc.bcm.edu	37	1	27278443	27278443	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,1	.	NM_152365	exon2	c.C429A	p.P143P	CCGGCTGGGGGGT	.	17	2	24	0	.	38
MUC4	4585	hgsc.bcm.edu	37	3	195507064	195507064	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C11387G	p.T3796S	GTGTCGGTGACAG	.	255	10	95	1	.	0
SLCO1B3	28234	hgsc.bcm.edu	37	12	21033923	21033923	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_019844	exon12	c.G1466A	p.C489Y	CAGGATGCAAATC	.	98	5	57	0	.	.
MUSK	4593	hgsc.bcm.edu	37	9	113449410	113449410	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUSK,NS,carcinoma,0,1	MUSK	NM_001166281	exon3	c.C220A	p.R74R	GACACCCGGTACA	.	46	2	47	0	.	0
AKNA	80709	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	117105995	117105995	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_030767	exon19	c.G3750A	p.Q1250Q	CGCATCCTGGGTC	.	50	17	17	0	.	.
ASPHD2	57168	hgsc.bcm.edu	37	22	26830408	26830408	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020437	exon2	c.C827A	p.P276H	TGAGCCCTGGGAC	.	78	4	54	0	.	.
RMST	196475	hgsc.bcm.edu	37	12	97908556	97908556	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ACCTTGGGACTTA	.	42	4	16	0	.	.
NSUN2	54888	hgsc.bcm.edu	37	5	6622195	6622195	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_017755	exon6	c.G556A	p.A186T	CAGGTGCTGCACA	.	81	4	43	0	.	.
HNRNPCL1	343069	hgsc.bcm.edu	37	1	12907275	12907275	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HNRNPCL1,NS,neuroblastoma,0,1	HNRNPCL1	NM_001013631	exon2	c.C868G	p.Q290E	CATCCTGGCCATT	.	75	4	60	0	.	0
TTN	7273	hgsc.bcm.edu	37	2	179650369	179650369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001267550	exon15	c.C2471A	p.P824H	GTCTTAGGAACAG	.	94	4	43	0	.	.
EP300	2033	hgsc.bcm.edu	37	22	41547849	41547849	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001429	exon15	c.G2830A	p.A944T	CAGCCAGCTGTAA	.	73	5	29	0	.	.
LRRC37A3	374819	hgsc.bcm.edu	37	17	62856687	62856687	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_199340	exon11	c.G3577T	p.A1193S	CCTGGGCACCCTG	.	176	7	64	0	.	.
SQRDL	58472	hgsc.bcm.edu;broad.mit.edu	37	15	45954270	45954270	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_021199	exon3	c.G352T	p.V118L	GCTAGAGTGACTG	.	98	4	54	0	.	.
EP400	57634	hgsc.bcm.edu	37	12	132547144	132547144	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	EP400,NS,carcinoma,0,1	EP400	NM_015409	exon47	c.G8232A	p.Q2744Q	ACAGCAGCAGCAG	.	55	7	22	1	.	0
PRR21	643905	hgsc.bcm.edu	37	2	240981683	240981683	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PRR21,NS,carcinoma,0,2	PRR21	NM_001080835	exon1	c.T717C	p.H239H	AGAGGCATGGACG	.	22	5	7	0	.	0
FAM122C	159091	hgsc.bcm.edu;bcgsc.ca	37	X	133938244	133938244	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001170780	exon3	c.G17T	p.G6V	TCCCTGGAACTGG	.	52	4	38	0	.	.
NRXN1	9378	hgsc.bcm.edu	37	2	50699451	50699451	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	NRXN1_ENST00000536085,NS,carcinoma,0,3	NRXN1_ENST00000536085	NM_001135659	exon17	c.G3349T	p.E1117X	CTCTCTCGATCTG	.	70	4	41	0	.	0
ZNF85	7639	hgsc.bcm.edu	37	19	21131993	21131993	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001256171	exon5	c.A763G	p.T255A	ATTCATACGGGAG	.	78	4	51	0	.	.
EMR3	84658	hgsc.bcm.edu	37	19	14736408	14736408	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_032571	exon15	c.C1816A	p.Q606K	GTTTCTGGACCTG	.	84	4	33	0	.	.
UBAC1	10422	hgsc.bcm.edu	37	9	138836946	138836946	+	Missense_Mutation	SNP	C	C	A	rs200169387		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	UBAC1,caecum,adenoma,0,1	UBAC1	NM_016172	exon7	c.G804T	p.E268D	GGCCTCCTCATCG	.	31	4	14	0	.	0
CPNE1	8904	hgsc.bcm.edu	37	20	34218396	34218396	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003915	exon13	c.C1082T	p.A361V	TTCAAGGCAAATT	.	98	4	56	0	.	.
KRTDAP	388533	hgsc.bcm.edu	37	19	35978354	35978354	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_207392	exon6	c.G276A	p.R92R	TGCGCTCCTCAGT	.	84	4	28	0	.	.
CA6	765	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	9027751	9027751	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001270500	exon6	c.A605G	p.Q202R	ACGTTCAGGACAT	.	31	25	28	0	.	.
BBX	56987	hgsc.bcm.edu	37	3	107435575	107435575	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001142568	exon5	c.G284T	p.R95L	GCCATCGCTCTCT	.	83	4	54	0	.	.
CPXM1	56265	hgsc.bcm.edu	37	20	2776024	2776024	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CPXM1,NS,carcinoma,0,1	CPXM1	NM_019609	exon12	c.G1759T	p.E587X	TGACCTCAAAGCA	.	32	2	17	0	.	0
FANCD2	2177	hgsc.bcm.edu	37	3	10108913	10108913	+	Missense_Mutation	SNP	G	G	T	rs80258959	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	FANCD2,NS,carcinoma,0,2	FANCD2	NM_001018115	exon26	c.G2406T	p.Q802H	CTGCCAGGAAACA	.	38	2	45	0	.	0
MUC4	4585	hgsc.bcm.edu	37	3	195513782	195513782	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_018406	exon2	c.G4669A	p.D1557N	AAGCGTCGGTGAC	.	242	16	66	0	.	.
XRCC6BP1	91419	hgsc.bcm.edu	37	12	58340779	58340779	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_033276	exon3	c.G235T	p.A79S	TTTAGTGCTGTTA	.	80	4	34	0	.	.
STAU2-AS1	100128126	hgsc.bcm.edu	37	8	74334955	74334955	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	AACAAACAGAGAG	.	36	4	40	0	.	.
ZNF750	79755	hgsc.bcm.edu	37	17	80788577	80788577	+	Missense_Mutation	SNP	G	G	T	rs142714888	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024702	exon3	c.C1613A	p.A538E	GTTTCCGCCTGGG	.	82	4	44	0	.	.
EIF4G2	1982	hgsc.bcm.edu	37	11	10821765	10821765	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001172705	exon18	c.C1991A	p.P664Q	TCTAGTGGTTGAG	.	71	4	30	0	.	.
SEMA6C	10500	hgsc.bcm.edu;broad.mit.edu	37	1	151109372	151109372	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	SEMA6C,NS,carcinoma,0,1	SEMA6C	NM_001178061	exon11	c.G935A	p.R312H	GCAGAGCGGCCAT	.	59	4	54	0	.	0
RNU6-71	100873774	hgsc.bcm.edu	37	6	56327829	56327829	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GACTCTGGGGCCT	.	49	4	43	0	.	.
RBM47	54502	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	4	40434693	40434693	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001098634	exon6	c.C1517A	p.T506N	GACACAGTGGGAA	.	40	4	39	0	.	.
BLOC1S5-TXNDC5	100526836	hgsc.bcm.edu	37	6	8027745	8027745	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TAATGATAACCAC	.	34	19	19	0	.	.
STARD9	57519	hgsc.bcm.edu;bcgsc.ca	37	15	42981584	42981584	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020759	exon23	c.C7808T	p.S2603L	AGTCATCATCAGA	.	50	18	29	0	.	.
MARCH6	10299	hgsc.bcm.edu;bcgsc.ca	37	5	10411446	10411446	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005885	exon19	c.G1693T	p.D565Y	CACAGGGATCTTC	.	86	5	42	0	.	.
MYO15B	80022	hgsc.bcm.edu	37	17	73616212	73616212	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ATCCCTGGAAGTC	.	29	4	8	0	.	.
SOS1	6654	hgsc.bcm.edu	37	2	39222277	39222277	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005633	exon20	c.C3333A	p.S1111R	AAAAGGGCTCGAA	.	91	5	68	0	.	.
C21orf90	114043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	21	45938574	45938574	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TCATTCGTTAGAT	.	24	11	15	0	.	.
PIK3CB	5291	hgsc.bcm.edu	37	3	138407796	138407796	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006219	exon14	c.C2057T	p.A686V	GAGACAGCAGGAA	.	55	4	43	0	.	.
MVD	4597	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	88721635	88721635	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_002461	exon7	c.G869A	p.R290H	TTGAAGCGGTGCA	.	42	12	25	0	.	.
NYAP2	57624	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	2	226447575	226447575	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020864	exon4	c.C1442A	p.S481X	CCGTGTCGCAAGA	.	71	24	37	0	.	.
LAMA3	3909	hgsc.bcm.edu	37	18	21513818	21513818	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_198129	exon67	c.C8781T	p.C2927C	AGGCTGCAGTTTA	.	90	5	44	0	.	.
CSNK1A1L	122011	hgsc.bcm.edu	37	13	37678436	37678436	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CSNK1A1L,NS,carcinoma,0,1	CSNK1A1L	NM_145203	exon1	c.C958A	p.Q320K	GGGTTTGGGCCTG	.	43	2	30	0	.	0
MACF1	23499	hgsc.bcm.edu	37	1	39766025	39766025	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_012090	exon23	c.G2640T	p.R880S	CTACAGGCAGATC	.	66	5	19	0	.	.
NDST4	64579	hgsc.bcm.edu	37	4	115858480	115858480	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_022569	exon5	c.C1401A	p.S467R	CATGATGCTATTG	.	58	3	49	0	.	.
DDHD1	80821	hgsc.bcm.edu	37	14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	rs200797826	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	22	0	13	0	.	202
RNR1	6052	hgsc.bcm.edu	37	MT	762	762	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CATCAAGCACGCA	.	876	117	143	0	.	.
CLGN	1047	hgsc.bcm.edu	37	4	141321605	141321605	+	Silent	SNP	G	G	T	rs138156952		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	CLGN,hand,malignant_melanoma,0,1	CLGN	NM_001130675	exon8	c.C600A	p.P200P	AGTTTTGGGATGT	.	45	2	31	0	.	0
tRNA-Pro	0	hgsc.bcm.edu	37	MT	15961	15961	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ATCAGAGAAAAAG	.	35	8	7	0	.	.
TAF1L	138474	hgsc.bcm.edu	37	9	32631851	32631851	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TAF1L,NS,carcinoma,+2,2	TAF1L	NM_153809	exon1	c.C3727T	p.R1243W	TCCGCCGTTCTTT	.	79	3	37	0	.	+2
ZFP106	64397	hgsc.bcm.edu	37	15	42740764	42740764	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	ZFP106,caecum,carcinoma,0,1	ZFP106	NM_022473	exon3	c.C2572A	p.R858R	GGCTTCGCTTTCT	.	59	4	50	0	.	0
ANKRD20A5P	440482	hgsc.bcm.edu	37	18	14214318	14214318	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TATTAGGTTTTTT	.	141	6	138	0	.	.
PDCL	5082	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	9	125588973	125588973	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PDCL,NS,carcinoma,0,1	PDCL	NM_005388	exon2	c.C94T	p.R32X	TGCCTCGGTCCTT	.	57	19	29	0	.	0
TMPRSS11A	339967	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	68777188	68777188	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_182606	exon10	c.C1138A	p.L380M	CTTTCAGATCCCT	.	52	5	41	0	.	.
WNK1	65125	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	966367	966367	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001184985	exon5	c.A1352G	p.E451G	TTCCTGAAGTGAA	.	131	49	100	0	.	.
KRT1	3848	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	53070970	53070970	+	Splice_Site	SNP	T	T	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006121	exon7	c.1129-2A>C	.	TCATACTAAAGAT	.	52	19	22	0	.	.
MED12L	116931	hgsc.bcm.edu;bcgsc.ca	37	3	150876586	150876586	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_053002	exon6	c.G837T	p.Q279H	GCTGCAGGTATAG	.	117	5	41	0	.	.
KCNH3	23416	hgsc.bcm.edu	37	12	49935525	49935525	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	KCNH3,NS,carcinoma,+2,1	KCNH3	NM_012284	exon3	c.C423T	p.G141G	AGGGGGCCCCGAC	.	68	3	40	0	.	+2
C3orf52	79669	hgsc.bcm.edu	37	3	111828389	111828389	+	Splice_Site	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_024616	exon4	c.397-1G>A	.	TGTTTAGCTCACA	.	119	5	41	0	.	.
OR1B1	347169	hgsc.bcm.edu	37	9	125391702	125391702	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	OR1B1,NS,lymphoid_neoplasm,0,1	OR1B1	NM_001004450	exon1	c.T113G	p.L38R	GTGGTCAGGTAAA	.	41	2	24	0	.	0
ALS2	57679	hgsc.bcm.edu	37	2	202593249	202593249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_020919	exon15	c.C2827A	p.L943M	GGACCAGGGCATC	.	72	3	34	0	.	.
DDHD2	23259	hgsc.bcm.edu	37	8	38117622	38117622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DDHD2,colon,carcinoma,0,2	DDHD2	NM_001164232	exon17	c.G2119T	p.D707Y	TTCCTTGATCAGC	.	49	2	31	0	.	0
DNAJC28	54943	hgsc.bcm.edu	37	21	34860754	34860754	+	Nonsense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DNAJC28,NS,carcinoma,0,2	DNAJC28	NM_001040192	exon2	c.T947G	p.L316X	ACAATTAAATTAA	.	91	4	47	0	.	0
ANKRD18DP	348840	hgsc.bcm.edu	37	3	197794345	197794345	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	AACTTTCGTTCTT	.	44	4	22	0	.	.
ZNF729	100287226	hgsc.bcm.edu	37	19	22487565	22487565	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001242680	exon3	c.A233T	p.E78V	GACATGAGATGGT	.	57	5	73	0	.	.
SGOL2	151246	hgsc.bcm.edu	37	2	201407335	201407335	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001160046	exon5	c.A421T	p.K141X	GCTAGCAAGAAGA	.	83	4	42	0	.	.
TIGD4	201798	hgsc.bcm.edu	37	4	153691681	153691681	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TIGD4,colon,carcinoma,+1,3	TIGD4	NM_145720	exon2	c.C476A	p.S159X	ACAGTCGAAGGGT	.	46	2	11	0	.	+1
PTTG1IP	754	hgsc.bcm.edu	37	21	46271541	46271541	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PTTG1IP_ENST00000445724,NS,carcinoma,0,2	PTTG1IP_ENST00000445724	NM_004339	exon6	c.C498T	p.G166G	AAACAGGCCTGAA	.	74	3	48	1	.	0
SAA3P	6290	hgsc.bcm.edu	37	11	18134347	18134347	+	RNA	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	AGTGAGCAACAGC	.	32	13	29	0	.	.
C6orf203	51250	hgsc.bcm.edu	37	6	107361230	107361230	+	Missense_Mutation	SNP	G	G	T	rs373305216	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	C6orf203,caecum,carcinoma,0,1	C6orf203	NM_001142470	exon3	c.G281T	p.R94M	ATATAAGGTCTAC	.	35	2	48	0	.	0
MGAT1	4245	hgsc.bcm.edu;bcgsc.ca	37	5	180219933	180219933	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001114617	exon3	c.C39A	p.G13G	GATAGCGCCCCAC	.	51	4	35	0	.	.
MIR558	693143	hgsc.bcm.edu	37	2	32757240	32757240	+	RNA	SNP	T	T	G	rs199863671		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GTGTGGTTATTTT	.	73	6	33	0	.	.
TOP2B	7155	hgsc.bcm.edu	37	3	25675377	25675377	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TOP2B,right_upper_lobe,carcinoma,0,1	TOP2B	NM_001068	exon8	c.A966G	p.K322K	GAATCCTTTTTCA	.	49	2	63	0	.	0
ZCCHC3	85364	hgsc.bcm.edu	37	20	278688	278688	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,4	.	NM_033089	exon1	c.C461A	p.P154Q	ATGAGCCGGCGGC	.	15	2	10	0	.	20
FAT1	2195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	4	187542176	187542176	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_005245	exon10	c.C5564T	p.P1855L	AAACGTGGGGTTC	.	20	15	12	0	.	.
PRPF18	8559	hgsc.bcm.edu	37	10	13629126	13629126	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_003675	exon1	c.C40T	p.L14L	CGGCAGCTGGTGG	.	95	3	66	0	.	.
HDGFRP2	0	hgsc.bcm.edu	37	19	4493798	4493798	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.,1	.	NM_032631	exon7	c.T777C	p.S259S	CTCCTCTTCCTCC	.	59	3	30	0	.	.
PKD1L1	168507	hgsc.bcm.edu	37	7	47894505	47894505	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_138295	exon30	c.G4834A	p.A1612T	GAAATGCCCTTGT	.	92	4	31	0	.	.
GOLPH3L	55204	hgsc.bcm.edu	37	1	150667291	150667291	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_018178	exon2	c.C24A	p.A8A	GCGACGGGCCCGG	.	76	4	47	0	.	.
MYO9A	4649	hgsc.bcm.edu	37	15	72338441	72338441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_006901	exon2	c.C464T	p.P155L	AAATCAGGTAAAC	.	95	4	44	0	.	.
SRFBP1	153443	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	121362644	121362644	+	Silent	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_152546	exon8	c.A1113T	p.P371P	TTTTCCACAGAAT	.	61	29	34	0	.	.
UHRF1BP1	54887	hgsc.bcm.edu	37	6	34803196	34803196	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_017754	exon7	c.G795T	p.E265D	CATGGAGAAGTCA	.	45	4	24	0	.	.
MIR548F1	100302192	hgsc.bcm.edu	37	1	186075931	186075931	+	RNA	SNP	A	A	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GGGGTTATTTACA	.	24	8	14	0	.	.
AKAP11	11215	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	13	42873939	42873939	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_016248	exon8	c.A1057C	p.S353R	GAAGTAAGTGAAT	.	86	49	55	0	.	.
ACOX1	51	hgsc.bcm.edu	37	17	73944443	73944443	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_007292	exon13	c.T1824A	p.D608E	AAATGCATCAACC	.	94	4	40	0	.	.
NAV1	89796	hgsc.bcm.edu	37	1	201709171	201709171	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001167738	exon1	c.C20A	p.P7H	CCCTGCCCAGATC	.	93	4	106	0	.	.
BPIFB4	149954	hgsc.bcm.edu	37	20	31685468	31685468	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	C20orf186,scalp,carcinoma,0,1	C20orf186	NM_182519	exon11	c.C1444T	p.Q482X	AGGATCCAGGTGC	.	38	2	7	0	.	0
ACO2	50	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41911822	41911822	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	NM_001098	exon6	c.G736A	p.D246N	CCCAAAGATGTGA	.	60	14	39	0	.	.
.	9181	broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	155952897	155952897	+	Splice_Site	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CTCCTACCTTGGC	.	43	17	19	0	.	.
CLCNKB	1188	broad.mit.edu	37	1	16383402	16383402	+	Silent	SNP	C	C	T	rs6698427	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CLCNKB	NM_000085	exon20	c.C2055T	p.A685A	GCCAGCCCCAAAG	.	111	4	102	0	.	50
FAT3	120114	broad.mit.edu	37	11	92532860	92532860	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	FAT3_ENST00000409404,NS,carcinoma,+1,2	FAT3	NM_001008781	exon9	c.T6681C	p.P2227P	GGACCCTTTTAAA	.	50	4	44	0	.	1822
SAP18	10284	broad.mit.edu	37	13	21714709	21714709	+	Silent	SNP	C	C	T	rs368287644		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	SAP18	NM_005870	exon1	c.C18T	p.V6V	AGGGGTCGGAGGT	.	15	4	21	0	.	12
OTX2-AS1	0	broad.mit.edu	37	14	57280005	57280005	+	RNA	DEL	T	T	-	rs375495685	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GGGGGGTGAAAGA	.	7	3	4	0	.	.
.	0	broad.mit.edu	37	14	20098927	20098927	+	RNA	DEL	A	A	-	rs373530853		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TGGGAGAAAAAAA	.	90	5	79	3	.	.
CDAN1	146059	broad.mit.edu	37	15	43028860	43028860	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CDAN1	NM_138477	exon2	c.209delC	p.P70fs	GGGGTCGGGGGCC	.	9	3	6	0	.	70
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	28975450	28975450	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	GAACAGACAAACC	.	47	7	33	0	.	.
TP53	7157	broad.mit.edu;bcgsc.ca	37	17	7577554	7577573	+	Frame_Shift_Del	DEL	TGCAGGAACTGTTACACATG	TGCAGGAACTGTTACACATG	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TP53,NS,carcinoma,0,28	TP53	NM_000546	exon7	c.708_727del	p.236_243del	CGCCCATGCAGGA	.	17	7	28	0	.	33396
.	0	broad.mit.edu	37	19	19944580	19944580	+	RNA	DEL	T	T	-	rs200238177		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TTAATCTTTTTTT	.	21	6	9	0	.	.
LOC728323	0	broad.mit.edu	37	2	243072696	243072696	+	RNA	DEL	T	T	-	rs377762947		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ACAATATATATTA	.	8	3	4	0	.	.
HOXD4	3233	broad.mit.edu	37	2	177016418	177016418	+	Silent	SNP	G	G	T	rs376860683	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	HOXD4	NM_014621	exon1	c.G57T	p.P19P	CCCTCCGTGCGAG	.	140	5	102	0	.	32
HOXD8	0	broad.mit.edu	37	2	176993750	176993750	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	HOXD8	.	.	.	.	GAGCCCTTTTTCC	.	52	3	41	0	.	24
STON1-GTF2A1L	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	48896871	48896871	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	STON1-GTF2A1L	NM_001198593	exon9	c.C3101T	p.S1034F	CTAATTCTCAGGT	.	95	42	56	1	.	180
CYP21A2	0	broad.mit.edu	37	6	31975463	31975463	+	RNA	SNP	T	T	C	rs370433041		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	CYP21A2	.	.	.	.	CGACTGTAGGAGG	.	59	4	59	0	.	42
RREB1	6239	broad.mit.edu;bcgsc.ca	37	6	7189542	7189542	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	RREB1	NM_001003700	exon6	c.G412T	p.G138W	ACCAATGGGAACA	.	14	7	19	0	.	242
DPY19L2P1	0	broad.mit.edu	37	7	35131480	35131480	+	RNA	SNP	A	A	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TCGTAAAGTGGAT	.	156	11	60	1	.	.
PEX1	5189	broad.mit.edu	37	7	92146721	92146721	+	Frame_Shift_Del	DEL	T	T	-	rs61750406	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	PEX1	NM_000466	exon5	c.1108delA	p.I370fs	ACCTAATTTTTTT	.	136	7	41	0	.	102
ADCK5	203054	broad.mit.edu	37	8	145617535	145617549	+	Splice_Site	DEL	GGGGGTGCAAGGTGA	GGGGGTGCAAGGTGA	-	rs11270020		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ADCK5	NM_174922	exon12	c.1257_1267del	p.419_423del	CGCACTGGGGGTG	.	6	2	4	0	.	36
PXDNL	137902	broad.mit.edu;ucsc.edu	37	8	52321348	52321348	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	PXDNL_ENST00000356297,NS,carcinoma,0,6	PXDNL	NM_144651	exon17	c.C2836T	p.R946X	CCTGTCGCGCGCA	.	18	4	10	0	.	414
KDM4C	23081	broad.mit.edu	37	9	7170012	7170012	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	KDM4C	NM_001146694	exon21	c.G3116T	p.C1039F	GCCAATGCAACAT	.	104	4	58	0	.	186
PLXNA3	55558	broad.mit.edu	37	X	153688565	153688565	+	Frame_Shift_Del	DEL	G	G	-	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	PLXNA3	NM_017514	exon2	c.42delG	p.V14fs	TGCCGTGGGGGGG	.	9	3	6	0	.	156
HNRNPCL1	343069	ucsc.edu;bcgsc.ca	37	1	12907358	12907358	+	Missense_Mutation	SNP	T	T	C	rs74587302	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	HNRNPCL1,NS,neuroblastoma,0,1	HNRNPCL1	NM_001013631	exon2	c.A785G	p.Q262R	TCCCCCTGATCTT	.	62	10	49	0	.	68
OR2T12	127064	ucsc.edu	37	1	248458419	248458419	+	Silent	SNP	G	G	C	rs35294053	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	OR2T12	NM_001004692	exon1	c.C462G	p.G154G	CAGGAGGCCGTCA	.	39	7	22	0	G|0.833;C|0.167	113
ALPP	250	ucsc.edu	37	2	233246249	233246249	+	Missense_Mutation	SNP	A	A	G	rs1048994	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ALPP	NM_001632	exon11	c.A1352G	p.E451G	TGGACGAAGAGAC	.	65	13	52	2	A|1.000;|0.000	53
DSPP	1834	ucsc.edu;bcgsc.ca	37	4	88537327	88537327	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	DSPP,colon,carcinoma,+1,1	DSPP	NM_014208	exon5	c.C3513T	p.S1171S	CGACAGCAGCGAT	.	34	4	42	0	.	174
TRAF4	9618	ucsc.edu	37	17	27075650	27075650	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	TRAF4	NM_004295	exon6	c.T746C	p.L249P	TGGTGCTCTGCCC	.	41	4	13	0	.	20
KRTAP9-9	81870	ucsc.edu	37	17	39412093	39412093	+	Silent	SNP	C	C	A	rs368292401	alternate_allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	KRTAP9-9	NM_030975	exon1	c.C456A	p.T152T	CAGGACCACTTGC	.	147	16	53	2	.	24
PLXNB1	5364	bcgsc.ca	37	3	48461494	48461494	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	PLXNB1	NM_001130082	exon11	c.G2201T	p.S734I	CAGGGGCTGAGCA	.	43	4	42	0	.	150
.	644063	bcgsc.ca	37	3	96069164	96069164	+	RNA	SNP	C	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CCCATGCGGGGAA	.	91	5	56	0	.	.
SEC24B	10427	bcgsc.ca	37	4	110453888	110453888	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	SEC24B	NM_006323	exon21	c.G3484T	p.D1162Y	CTTATGGACTGTG	.	24	3	38	0	.	186
ZDHHC11	79844	bcgsc.ca	37	5	825293	825293	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ZDHHC11	NM_024786	exon8	c.G1009A	p.D337N	TCGAATCCCCATC	.	34	4	33	0	.	97
.	0	bcgsc.ca	37	5	110283910	110283910	+	RNA	SNP	T	C	C	rs80293008	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TTTTGGTCTAATA	.	37	8	26	1	.	.
.	0	bcgsc.ca	37	5	110283912	110283912	+	RNA	SNP	T	C	C	rs74826826	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TTGGTCTAATAAT	.	38	7	23	1	.	.
.	0	bcgsc.ca	37	5	110283938	110283938	+	RNA	SNP	A	G	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TCTGTCATGATGC	.	40	8	22	1	.	.
.	0	bcgsc.ca	37	5	110283940	110283940	+	RNA	SNP	G	C	C	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	TGTCATGATGCAA	.	39	7	21	1	.	.
.	0	bcgsc.ca	37	5	110283944	110283944	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	ATGATGCAAGAAA	.	37	7	19	0	.	.
MUC2	4583	bcgsc.ca	37	11	1092843	1092843	+	Silent	SNP	C	G	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC2_ENST00000441003,trunk,malignant_melanoma,+1,2	MUC2	NM_002457	exon30	c.C4662G	p.G1554G	CACCGGCACACAG	.	375	12	238	1	.	614
MUC2	4583	bcgsc.ca	37	11	1092890	1092890	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	MUC2_ENST00000441003,NS,carcinoma,-1,2	MUC2	NM_002457	exon30	c.C4709T	p.T1570I	CGGTGACCCCAAC	.	589	17	405	2	.	614
ME3	10873	bcgsc.ca	37	11	86157510	86157510	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	ME3	NM_006680	exon13	c.G1400T	p.S467I	CTTCCACTGGCAA	.	18	3	39	0	.	70
DGKA	1606	bcgsc.ca	37	12	56347156	56347156	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	DGKA	NM_201554	exon23	c.C2086A	p.Q696K	CCCATGCAAATTG	.	71	4	31	0	.	70
.	0	bcgsc.ca	37	15	23128413	23128413	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CTTTAAGAGTTCA	.	187	53	86	0	.	.
.	0	bcgsc.ca	37	15	102305011	102305011	+	RNA	SNP	T	C	C	rs368196195		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CAGGCATAGCGGC	.	55	7	34	0	.	.
MYH2	4620	bcgsc.ca	37	17	10436657	10436657	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	MYH2	NM_017534	exon21	c.G2386A	p.A796T	ACCTGGCCTGGGT	.	57	5	66	0	.	390
MKS1	54903	bcgsc.ca	37	17	56293485	56293485	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	MKS1	NM_017777	exon4	c.C381A	p.T127T	AGTGTAGGTAAAG	.	142	5	50	0	.	100
FRG1B	284802	bcgsc.ca	37	20	29628263	29628263	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	FRG1B,NS,carcinoma,0,20	FRG1B	.	.	.	.	TGCTTTATTAGAT	.	727	28	404	6	.	181
FRG1B	284802	bcgsc.ca	37	20	29632707	29632707	+	Silent	SNP	G	A	A	rs6057187	bycluster;by2hit2allele	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	FRG1B,NS,malignant_melanoma,0,4	FRG1B	.	.	.	.	GCATGAGACGCTT	.	387	19	198	6	G|0.500;A|0.500	181
GART	2618	bcgsc.ca	37	21	34889332	34889332	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	GART	NM_001136005	exon16	c.C2071A	p.P691T	CTCTGGGGATGTT	.	57	4	36	0	.	81
.	23751	bcgsc.ca	37	22	22578444	22578444	+	RNA	SNP	G	C	C	rs75673893	bycluster	TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	.	.	.	.	.	.	CTCCCGGGGCAGC	.	25	11	21	0	G|0.500;C|0.500	.
TMEM132D	121256	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	130184567	130184568	+	Missense_Mutation	DNP	TG	TG	CC	novel		TCGA-W5-AA2O-01A-11D-A417-09	TCGA-W5-AA2O-10A-01D-A41A-09	TG	TG	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	61057f6c-7608-4c67-8381-6df68fe11d37	3ff81ee1-202a-49fd-b64b-7ad86894fc5e	TMEM132D,right_lower_lobe,carcinoma,0,1	TMEM132D	NM_133448	exon2	c.C755G	p.T252R	TGGCCTGTCCGGA	.	40	13	30	0	.	0
