Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ISL2	64843	hgsc.bcm.edu	37	15	76632660	76632661	+	Frame_Shift_Ins	INS	-	-	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_145805	exon4	c.555_556insA	p.H185fs	CGTGCACAAGCAG	.	39	15	76	0	.	.
EP400	57634	hgsc.bcm.edu	37	12	132514441	132514441	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015409	exon28	c.C5577T	p.F1859F	GCAGTTCGACTCA	.	51	4	86	0	.	.
HAPLN3	145864	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	89424838	89424838	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HAPLN3,colon,carcinoma,0,1	HAPLN3	NM_178232	exon3	c.G243A	p.P81P	ACGCCGCGGGGAG	.	17	9	43	0	.	0
SAMD9	54809	hgsc.bcm.edu	37	7	92733180	92733180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SAMD9,NS,carcinoma,0,1	SAMD9	NM_001193307	exon2	c.C2231A	p.T744N	AAGGTAGTTCCCC	.	60	3	125	0	.	0
PXDN	7837	hgsc.bcm.edu;broad.mit.edu	37	2	1670036	1670036	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PXDN,NS,carcinoma,0,1	PXDN	NM_012293	exon10	c.C1241T	p.A414V	TTGGTCGCAGAGC	.	49	3	66	0	.	0
AR	367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	66765910	66765910	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000044	exon1	c.G922A	p.E308K	ACTGCTGAGTATT	.	15	11	64	0	.	.
GAD1	2571	hgsc.bcm.edu	37	2	171702096	171702096	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GAD1,caecum,carcinoma,0,1	GAD1	NM_000817	exon8	c.G832A	p.A278T	ATGGCGGCTGTGC	.	64	3	81	0	.	0
NFATC2	4773	hgsc.bcm.edu	37	20	50092014	50092014	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NFATC2,right_upper_lobe,carcinoma,0,2	NFATC2	NM_012340	exon4	c.A1516C	p.K506Q	TGTTTTTGGGCTC	.	66	4	73	1	.	0
NEBL	10529	hgsc.bcm.edu;bcgsc.ca	37	10	21169808	21169808	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_006393	exon5	c.C395A	p.A132D	TTGGCAGCATCAT	.	62	4	127	0	.	.
VMO1	284013	hgsc.bcm.edu	37	17	4688807	4688807	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	VMO1,NS,carcinoma,0,1	VMO1	NM_182566	exon3	c.G459T	p.Q153H	AGGCCCCTGCAGT	.	52	3	55	0	.	0
GCNT4	51301	hgsc.bcm.edu	37	5	74325091	74325091	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GCNT4,NS,carcinoma,0,1	GCNT4	NM_016591	exon1	c.C772A	p.P258T	TGTTTGGGGGTTT	.	47	2	52	0	.	0
ZXDC	79364	hgsc.bcm.edu	37	3	126160731	126160731	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	ZXDC_ENST00000389709,NS,carcinoma,0,1	ZXDC_ENST00000389709	NM_025112	exon8	c.C2271A	p.F757L	TGCATGGAAATGG	.	31	2	83	0	.	0
USP35	57558	hgsc.bcm.edu	37	11	77921399	77921399	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,2	.	NM_020798	exon10	c.T2498C	p.L833P	TGCTGCTCCGCCT	.	312	29	21	2	.	179
NBAS	51594	hgsc.bcm.edu	37	2	15378717	15378717	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015909	exon45	c.G5818A	p.E1940K	GAGCTTCGTCTTC	.	76	3	165	0	.	.
PHACTR1	221692	hgsc.bcm.edu	37	6	13053670	13053670	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_030948	exon5	c.C324T	p.R108R	CATCCGCAGGAGA	.	100	3	127	0	.	.
CHRM3	1131	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	240072089	240072089	+	Silent	SNP	A	A	C	rs200157577	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000740	exon5	c.A1338C	p.S446S	CTCCTCAGTGGGT	.	59	20	55	0	.	.
KDELC2	143888	hgsc.bcm.edu	37	11	108361840	108361840	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	KDELC2,rectum,carcinoma,0,1	KDELC2	NM_153705	exon2	c.G257A	p.R86Q	TGTATCCGGACCA	.	29	2	66	0	.	0
TGFBRAP1	9392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	105897081	105897081	+	Silent	SNP	G	G	A	rs369009120		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TGFBRAP1,NS,carcinoma,0,1	TGFBRAP1	NM_004257	exon6	c.C1221T	p.Y407Y	GTCTGCGTACTCA	.	20	7	39	0	.	0
BICD1	636	hgsc.bcm.edu	37	12	32481467	32481467	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	BICD1,colon,carcinoma,0,1	BICD1	NM_001714	exon5	c.C2078T	p.A693V	TGAGGGCGGTGTT	.	21	2	36	0	.	0
TAS2R31	259290	hgsc.bcm.edu	37	12	11183296	11183296	+	Silent	SNP	A	A	G	rs370468039		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TAS2R31,NS,carcinoma,0,1	TAS2R31	NM_176885	exon1	c.T639C	p.G213G	TCCTTTACCATGG	.	73	3	82	1	.	0
LAIR2	3904	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	55019357	55019357	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_002288	exon3	c.G322A	p.G108R	CCCCCTGGATGGT	.	49	27	70	0	.	.
NPVF	64111	hgsc.bcm.edu	37	7	25266573	25266573	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NPVF,NS,carcinoma,+2,9	NPVF	NM_022150	exon2	c.A211G	p.I71V	TCTTAATAACATT	.	50	3	101	1	.	+2
TRIM55	84675	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	67039583	67039583	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_184086	exon1	c.C80T	p.P27L	TCTGTCCCATCTG	.	53	18	49	0	.	.
GPR31	2853	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167570387	167570387	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_005299	exon1	c.T933G	p.D311E	GTTGAAATCTGGG	.	21	16	50	0	.	.
MED13L	23389	hgsc.bcm.edu	37	12	116399131	116399131	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015335	exon31	c.C6573A	p.C2191X	GGGAAGGCAGGAA	.	50	4	69	0	.	.
DOCK11	139818	hgsc.bcm.edu	37	X	117777438	117777438	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_144658	exon40	c.G4279T	p.D1427Y	AATAATGATGGCC	.	97	4	231	0	.	.
ZNF831	128611	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	57769548	57769548	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	ZNF831,NS,carcinoma,0,1	ZNF831	NM_178457	exon1	c.G3474A	p.T1158T	AGGGACGTCCCGG	.	33	14	47	0	.	0
FKBP9L	360132	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	55750187	55750187	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TATATCAACCCAC	.	28	13	32	0	.	.
FAM24B-CUZD1	0	hgsc.bcm.edu	37	10	124595891	124595891	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	AAAAAAGAATGGT	.	47	4	48	0	.	.
UBASH3A	53347	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	43857670	43857670	+	Missense_Mutation	SNP	C	C	T	rs201756769	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018961	exon11	c.C1466T	p.T489M	TGCAGACGGCCAA	.	35	17	45	0	0.001	.
MOXD1	26002	hgsc.bcm.edu	37	6	132645229	132645229	+	Silent	SNP	T	T	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MOXD1_ENST00000336749,NS,carcinoma,0,2	MOXD1_ENST00000336749	NM_015529	exon7	c.A954T	p.I318I	ATTATCTATTAAG	.	24	2	54	0	.	0
TCHH	7062	hgsc.bcm.edu	37	1	152082269	152082269	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TCHH,NS,malignant_melanoma,0,1	TCHH	NM_007113	exon3	c.G3424A	p.E1142K	CTTCCTCCCGATA	.	74	3	55	0	.	0
ALMS1	7840	hgsc.bcm.edu	37	2	73800387	73800387	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_015120	exon16	c.G11380T	p.G3794C	GCTTTTGGCCATG	.	45	2	54	0	.	384
HS3ST1	9957	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	11401504	11401504	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_005114	exon2	c.C126T	p.R42R	GCCATCGCGGACG	.	24	10	33	0	.	.
BTN2A3P	54718	hgsc.bcm.edu	37	6	26422390	26422390	+	RNA	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	CCTCCCTCCTCCT	.	63	4	66	0	.	.
DTHD1	401124	hgsc.bcm.edu	37	4	36309926	36309926	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	DTHD1_ENST00000456874,NS,carcinoma,0,2	DTHD1_ENST00000456874	NM_001170700	exon6	c.G1531A	p.V511I	TGCATAGTACTGT	.	61	3	101	0	.	0
VRK3	51231	hgsc.bcm.edu	37	19	50519394	50519394	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	VRK3,NS,carcinoma,0,1	VRK3	NM_016440	exon3	c.G26A	p.G9D	CTTTTGCCACAGT	.	45	2	62	0	.	0
DNAH9	1770	hgsc.bcm.edu;bcgsc.ca	37	17	11774974	11774974	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001372	exon52	c.G10113T	p.Q3371H	CAAACAGCAGGAA	.	70	4	86	0	.	.
NCOA3	8202	hgsc.bcm.edu	37	20	46279833	46279833	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NCOA3,NS,carcinoma,0,3	NCOA3	NM_181659	exon20	c.G3759A	p.Q1253Q	GCAGCAGCAACAG	.	34	2	47	0	.	0
BNC2	54796	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	16419547	16419547	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	BNC2,NS,carcinoma,0,1	BNC2	NM_017637	exon7	c.G2740A	p.D914N	ATTCATCGCGGAG	.	28	25	83	0	.	0
NEIL3	55247	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	178256872	178256872	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018248	exon3	c.G309A	p.M103I	CATCATGATTAAT	.	141	68	189	0	.	.
ENPP2	5168	hgsc.bcm.edu;bcgsc.ca	37	8	120602791	120602791	+	Silent	SNP	A	A	G	rs372866542	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_006209	exon14	c.T1317C	p.P439P	AGTTCCAGGCACT	.	71	4	93	0	.	.
HAS1	3036	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	52222503	52222503	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001523	exon2	c.T658C	p.Y220H	CTGTGTACATGAC	.	24	13	21	0	.	.
ELL2	22936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	95242375	95242375	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_012081	exon5	c.G593T	p.S198I	GTGCTGCTGCTAT	.	49	25	74	0	.	.
PODN	127435	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	53535704	53535704	+	Silent	SNP	C	C	T	rs143779530		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_153703	exon2	c.C321T	p.P107P	GGAGCCCGGGCCT	.	81	44	102	0	0.000	.
COQ9	57017	hgsc.bcm.edu	37	16	57486813	57486813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	COQ9,NS,carcinoma,0,1	COQ9	NM_020312	exon3	c.G343T	p.G115W	GCCCACGGGTGGA	.	33	2	29	0	.	0
EAF2	55840	hgsc.bcm.edu	37	3	121575996	121575996	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	EAF2,colon,carcinoma,0,1	EAF2	NM_018456	exon4	c.C477A	p.I159I	TGATATCGAAAGA	.	37	2	79	0	.	0
LRRCC1	85444	hgsc.bcm.edu	37	8	86022348	86022348	+	Splice_Site	SNP	A	A	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	LRRCC1_ENST00000414626,NS,carcinoma,0,2	LRRCC1_ENST00000414626	NM_033402	exon3	c.311-2A>T	.	TTTTTTAGGACTT	.	42	2	33	0	.	0
ZNF223	7766	hgsc.bcm.edu	37	19	44564661	44564661	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_013361	exon3	c.G69T	p.G23G	GCTGGGGCTGCTG	.	94	4	92	0	.	.
DMXL1	1657	hgsc.bcm.edu	37	5	118485955	118485955	+	Missense_Mutation	SNP	C	C	A	rs376786107	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	DMXL1,NS,carcinoma,0,1	DMXL1	NM_005509	exon18	c.C4433A	p.P1478Q	ACAGTCCGACTTA	.	34	2	65	0	.	0
CHRM2	1129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	136699781	136699781	+	Missense_Mutation	SNP	G	G	A	rs143842239	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	CHRM2,NS,adenocarcinoma,0,2	CHRM2	NM_001006632	exon3	c.G169A	p.V57I	CAGACCGTCAACA	.	32	9	65	0	0.000	0
NCOA2	10499	hgsc.bcm.edu	37	8	71068239	71068239	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	NCOA2,NS,carcinoma,0,1	NCOA2	NM_006540	exon11	c.G2361A	p.E787E	CTCCTTCTCAGTT	.	47	2	54	0	.	0
ZAR1	326340	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	4	48494818	48494818	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_175619	exon2	c.G999T	p.K333N	CTGCAAGGACTGC	.	61	4	66	0	.	.
OPRD1	4985	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	29189631	29189631	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	OPRD1,colon,carcinoma,0,1	OPRD1	NM_000911	exon3	c.G955A	p.A319T	CTCTACGCTTTCC	.	14	10	46	0	.	0
SHPRH	257218	hgsc.bcm.edu	37	6	146256253	146256253	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SHPRH_ENST00000367505,NS,carcinoma,0,2	SHPRH_ENST00000367505	NM_173082	exon13	c.C2780A	p.S927Y	ACTGGAGAAAAGT	.	26	2	61	0	.	0
C6orf62	81688	hgsc.bcm.edu	37	6	24706388	24706388	+	Missense_Mutation	SNP	G	G	T	rs372450488	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	C6orf62,NS,carcinoma,0,2	C6orf62	NM_030939	exon5	c.C667A	p.L223I	GACGGAGGTGATC	.	33	2	51	0	.	0
SLFN12	55106	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	33749505	33749505	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_018042	exon2	c.C543T	p.A181A	AACCCCGGCCAAG	.	80	21	72	0	.	.
DIDO1	11083	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	61512147	61512147	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001193369	exon16	c.G5161C	p.G1721R	TGTCCCCCTCTGT	.	22	9	33	0	.	.
AHCTF1P1	285116	hgsc.bcm.edu	37	2	162360518	162360518	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TAAGTCGTTGAGG	.	59	27	78	0	.	.
FPGT-TNNI3K	100526835	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	74957851	74957851	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001112808	exon25	c.A2555G	p.N852S	TGGTGAACCGGGG	.	74	24	121	0	.	.
S100A4	6275	hgsc.bcm.edu	37	1	153516381	153516381	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_002961	exon3	c.G160A	p.A54T	GGAAAGCAGCTTC	.	63	4	50	0	.	.
SCUBE2	57758	hgsc.bcm.edu	37	11	9101052	9101052	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	SCUBE2_ENST00000457346,NS,carcinoma,0,2	SCUBE2_ENST00000457346	NM_001170690	exon3	c.C261T	p.I87I	TTCATCGATGTCT	.	34	2	65	1	.	0
PLA2G1B	5319	hgsc.bcm.edu	37	12	120765537	120765537	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PLA2G1B,caecum,carcinoma,0,1	PLA2G1B	NM_000928	exon1	c.C20A	p.A7D	AGCACAGCTAGCA	.	34	2	54	0	.	0
TAF1L	138474	hgsc.bcm.edu	37	9	32633786	32633786	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_153809	exon1	c.G1792T	p.G598C	GAAGACCCTGTTG	.	26	2	62	0	.	382
KLHL25	64410	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	15	86311759	86311759	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_022480	exon2	c.C1283T	p.A428V	AAGGGGGCCACCA	.	22	10	39	0	.	.
LGI1	9211	hgsc.bcm.edu	37	10	95557554	95557554	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	LGI1,NS,carcinoma,0,1	LGI1	NM_005097	exon8	c.C1668T	p.S556S	CTTAAGCGCATGA	.	45	2	50	0	.	0
HECW2	57520	hgsc.bcm.edu	37	2	197184391	197184391	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HECW2,NS,carcinoma,0,1	HECW2	NM_020760	exon9	c.C1223A	p.P408H	CTGGGAGGTGAGG	.	52	3	45	0	.	0
AKAP12	9590	hgsc.bcm.edu	37	6	151674611	151674611	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	AKAP12,face,carcinoma,+1,1	AKAP12	NM_005100	exon4	c.G5085T	p.P1695P	TGAACCGAAAGAA	.	30	2	58	0	.	+1
CYP4A11	1579	hgsc.bcm.edu;bcgsc.ca	37	1	47395907	47395907	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000778	exon12	c.G1440A	p.L480L	AGGCAGCAGCTCA	.	52	4	113	0	.	.
GPR161	23432	hgsc.bcm.edu	37	1	168073858	168073858	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	GPR161,NS,carcinoma,0,1	GPR161	NM_001267609	exon3	c.C291A	p.S97S	CAACACGGACAGC	.	47	2	38	0	.	0
GPR98	84059	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	90052799	90052799	+	Missense_Mutation	SNP	G	G	A	rs200576500	bycluster	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_032119	exon57	c.G11761A	p.A3921T	AAGGGCGCTGGGG	.	49	21	65	0	.	.
RBM25	58517	hgsc.bcm.edu	37	14	73538375	73538375	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	RBM25,NS,carcinoma,0,2	RBM25	NM_021239	exon2	c.G26T	p.R9L	TGAATCGCCCTCC	.	40	2	91	0	.	0
RNF5	6048	hgsc.bcm.edu	37	6	32147865	32147865	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	RNF5,NS,carcinoma,0,3	RNF5	NM_006913	exon5	c.C407T	p.T136I	TCACCACCGTCTT	.	26	2	25	0	.	0
MRPS27	23107	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	71519605	71519605	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015084	exon10	c.G910A	p.D304N	CTTCATCATTTTG	.	46	24	69	0	.	.
PREX2	80243	hgsc.bcm.edu	37	8	68984774	68984774	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_025170	exon14	c.C1538T	p.A513V	TCATGGCCAACAA	.	98	4	117	0	.	.
EML3	256364	hgsc.bcm.edu	37	11	62378802	62378802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.,1	.	NM_153265	exon3	c.C209A	p.P70Q	AGTCCTGGGGGGG	.	70	3	98	0	.	61
HNRNPUL2	221092	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	62490357	62490357	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001079559	exon5	c.A910G	p.M304V	CTTTCATTGGGAG	.	45	21	53	0	.	.
IZUMO2	126123	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	50657879	50657879	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_152358	exon6	c.G601A	p.V201I	CGAAGACAAAGAC	.	88	39	122	0	.	.
ARHGEF4	50649	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	131797699	131797699	+	Silent	SNP	C	C	G	rs138695820		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_032995	exon7	c.C858G	p.T286T	GCGGACCAACGTC	.	66	11	89	0	0.000	.
ALB	213	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	74276063	74276063	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000477	exon6	c.C650T	p.S217F	CTTCGTCTGCCAA	.	44	20	70	0	.	.
TTN	7273	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	179528071	179528071	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	TTN_ENST00000541862,NS,carcinoma,0,1	TTN_ENST00000541862	NM_001267550	exon173	c.G36622C	p.E12208Q	GCACCTCTGGGAC	.	305	140	454	0	.	0
ITPRIP	85450	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	106074385	106074385	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001272013	exon2	c.C1425T	p.H475H	GAAGTGGTGGAGC	.	15	8	21	0	.	.
MC3R	4159	hgsc.bcm.edu	37	20	54824818	54824818	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MC3R,colon,carcinoma,-1,2	MC3R	NM_019888	exon1	c.C919T	p.R307C	GAATTGCGCAACA	.	35	2	55	0	.	-1
ADCK4	79934	hgsc.bcm.edu	37	19	41197996	41197996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_024876	exon15	c.G1579A	p.A527T	TGGCTGCGTCTGG	.	46	4	44	0	.	.
NFE2L3	9603	hgsc.bcm.edu	37	7	26224872	26224872	+	Silent	SNP	G	G	T	rs373484767	alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_004289	exon4	c.G1554T	p.G518G	GCCTGGGAAGTCA	.	73	4	79	0	.	.
HCN2	610	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	613928	613928	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001194	exon7	c.C1902T	p.S634S	GCTGAGCGTGGAC	.	35	22	38	0	.	.
LINC00346	283487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	111522056	111522056	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TAATGGCGTGGTA	.	35	9	73	0	.	.
TPTE	7179	hgsc.bcm.edu;broad.mit.edu	37	21	10941922	10941922	+	Nonsense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_199261	exon14	c.A781T	p.R261X	GATTTCTATAGAA	.	112	10	224	0	.	.
COL5A1	1289	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	137710726	137710726	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000093	exon56	c.G4371A	p.P1457P	AGGCCCGGACGGT	.	15	11	80	0	.	.
DLD	1738	hgsc.bcm.edu;bcgsc.ca	37	7	107557754	107557754	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_000108	exon11	c.G1083A	p.M361I	TCCAATGCTGGCT	.	40	4	54	0	.	.
PRDM9	56979	hgsc.bcm.edu	37	5	23527220	23527220	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PRDM9,trunk,malignant_melanoma,0,1	PRDM9	NM_020227	exon11	c.T2023C	p.W675R	TTTAGCTGGCAGT	.	64	8	86	2	.	0
AHRR	57491	hgsc.bcm.edu	37	5	434622	434622	+	Silent	SNP	C	C	T	rs370473413		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	AHRR,caecum,carcinoma,0,1	AHRR	NM_020731	exon12	c.C1833T	p.H611H	GGGGCACGGCGTG	.	18	2	24	0	.	0
MARCH1	55016	hgsc.bcm.edu	37	4	164466875	164466875	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	MARCH1_ENST00000503008,NS,carcinoma,0,2	MARCH1_ENST00000503008	NM_001166373	exon7	c.C444A	p.T148T	ACTTGTGGTCATC	.	51	3	57	0	.	0
C19orf47	126526	hgsc.bcm.edu;bcgsc.ca	37	19	40847787	40847787	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_001256440	exon2	c.G89A	p.S30N	ACACTGCTCCCTG	.	53	4	47	0	.	.
HYOU1	10525	hgsc.bcm.edu	37	11	118926263	118926263	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	HYOU1,scalp,carcinoma,0,1	HYOU1	NM_006389	exon4	c.C206G	p.P69R	ATCACCGGTGTTT	.	12	2	16	0	.	0
KIAA0947	23379	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	5463258	5463258	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	NM_015325	exon13	c.C3811T	p.Q1271X	GAACTTCAAACAA	.	48	17	77	0	.	.
ASPM	259266	broad.mit.edu	37	1	197115508	197115508	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ASPM	NM_001206846	exon1	c.G60C	p.P20P	CGCGGGCGGCCTC	.	26	3	29	1	.	444
LRRC7	57554	broad.mit.edu	37	1	70504282	70504282	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	LRRC7	NM_020794	exon19	c.T2661C	p.P887P	TAGTCCTTTTTCT	.	43	3	41	0	.	400
BMS1	9790	broad.mit.edu	37	10	43318571	43318571	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	BMS1,NS,carcinoma,0,2	BMS1	NM_014753	exon20	c.G3138A	p.M1046I	GGGAATGTTTAAT	.	212	6	326	2	.	132
HSD17B7P2	0	broad.mit.edu	37	10	38654432	38654432	+	RNA	SNP	A	A	G	rs2257765	bysubmitter	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	CTCGCAATGCAAG	.	48	5	61	1	A|1.000;|0.000	.
FLJ46361	0	broad.mit.edu	37	10	124516407	124516407	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TTTCGGGCAGGCT	.	27	3	39	0	.	.
MED19	219541	broad.mit.edu	37	11	57472100	57472100	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	MED19	NM_153450	exon4	c.C579A	p.P193P	TTAACTGGGTTTA	.	47	4	79	0	.	15
.	0	broad.mit.edu	37	11	96514999	96514999	+	RNA	DEL	A	A	-	rs149392521	bycluster;alternate_allele	TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	GTTATTAAAAAAA	.	6	2	12	0	.	.
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	97041772	97041772	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	CCAAAAAAAGAAA	.	58	22	72	0	.	.
SNORD114-4	0	broad.mit.edu	37	14	101420763	101420763	+	RNA	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TAATGTGTGTCTA	.	60	3	140	0	.	.
.	0	broad.mit.edu	37	15	83014132	83014132	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	RP13-996F3.4_ENST00000557886,NS,carcinoma,0,14	.	.	.	.	.	GGGGCTCTGGGGC	.	95	6	98	1	.	.
.	4157	broad.mit.edu	37	16	89980314	89980315	+	Translation_Start_Site	DEL	TG	TG	-	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	AGCAGATGTGTGT	.	6	1	8	0	.	.
KRT16P3	0	broad.mit.edu	37	17	20407759	20407759	+	RNA	SNP	G	G	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	GTGAGCGAGCGAG	.	126	28	183	0	.	.
RYR1	6261	broad.mit.edu	37	19	38995497	38995497	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	RYR1	NM_001042723	exon51	c.A8177G	p.K2726R	AGAAAAAGGCCAC	.	44	3	70	0	.	708
SLC8A2	6543	broad.mit.edu	37	19	47935681	47935683	+	In_Frame_Del	DEL	TCC	TCC	-	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	SLC8A2	NM_015063	exon9	c.2130_2132del	p.710_711del	GACCCGTCCTCCT	.	12	4	14	0	.	77
RANBP2	5903	broad.mit.edu	37	2	109367844	109367844	+	Missense_Mutation	SNP	T	T	G	rs2693126		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	RANBP2_ENST00000283195,NS,carcinoma,0,6	RANBP2	NM_006267	exon10	c.T1398G	p.H466Q	GCCCCATGAAACC	.	370	5	570	1	.	488
REG3G	130120	broad.mit.edu;ucsc.edu	37	2	79253292	79253292	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	REG3G	NM_198448	exon2	c.C73A	p.Q25K	CAGGTTCAAGGTG	.	15	4	41	1	.	67
DBNDD2	55861	broad.mit.edu	37	20	44035225	44035225	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	DBNDD2	NM_018478	exon1	c.T134G	p.L45R	CGCCTCTTCCTCG	.	12	8	9	0	.	30
PCSK2	5126	broad.mit.edu	37	20	17462329	17462329	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	PCSK2,NS,carcinoma,0,1	PCSK2	NM_002594	exon12	c.A1531G	p.I511V	GCTGTCATCACGG	.	50	3	99	0	.	112
SDHAP2	0	broad.mit.edu	37	3	195412436	195412440	+	RNA	DEL	AAAGC	AAAGC	-	rs113074348		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TTTTGTAAAGCAA	.	10	5	22	0	AAAGC|0.500;-|0.500	.
.	0	broad.mit.edu	37	3	98031434	98031434	+	RNA	DEL	A	A	-	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	AATCTTAAAAAAA	.	6	2	21	0	.	.
GRK4	2868	broad.mit.edu	37	4	2965777	2965779	+	In_Frame_Del	DEL	CGG	CGG	-	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	GRK4	.	.	.	.	ATCCGCCGGCGGC	.	6	2	16	0	.	72
SMAD5	4090	broad.mit.edu;ucsc.edu	37	5	135498966	135498966	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	SMAD5	.	.	.	.	GCTGATACGCCTC	.	34	12	33	0	.	30
TYW1B	441250	broad.mit.edu	37	7	72040313	72040313	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	CCCAGGCCCTCTG	.	6	4	12	0	.	.
.	0	broad.mit.edu;ucsc.edu	37	8	57295125	57295125	+	RNA	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TGAAATACAAACC	.	66	17	115	0	.	.
CACFD1	11094	broad.mit.edu	37	9	136325237	136325237	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CACFD1	NM_001242370	exon1	c.49delC	p.P17fs	GCGCCGCCCGCGC	.	5	2	15	0	.	1
GRM6	2916	ucsc.edu	37	5	178413508	178413508	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	GRM6	NM_000843	exon8	c.T1747C	p.S583P	AGGGGGAGGACCA	.	40	6	29	3	.	149
CA9	768	ucsc.edu;bcgsc.ca	37	9	35676345	35676345	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CA9	NM_001216	exon5	c.G799T	p.G267W	GCCTTGGGGCGCC	.	27	4	58	0	.	48
CLNS1A	1207	ucsc.edu	37	11	77336767	77336767	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CLNS1A	NM_001293	exon3	c.C359A	p.S120X	CACGCTGATTTAT	.	25	4	49	0	.	18
USP8	9101	ucsc.edu	37	15	50785054	50785054	+	Silent	SNP	C	C	T	rs199814360		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	USP8	NM_001128610	exon15	c.C2391T	p.N797N	ATGTAACGCTCCA	.	36	4	56	4	.	90
ADIG	149685	ucsc.edu	37	20	37216803	37216803	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ADIG	.	.	.	.	AGACTTGCCAGGG	.	60	17	97	21	.	16
SEC16B	89866	bcgsc.ca	37	1	177917032	177917032	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	SEC16B	NM_033127	exon13	c.G1591A	p.V531M	GAATCACAGCCAA	.	46	4	52	0	.	92
.	0	bcgsc.ca	37	2	96212978	96212978	+	RNA	SNP	T	C	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	GGATCCTTTTGTC	.	78	4	90	0	.	.
LRP1B	53353	bcgsc.ca	37	2	141528562	141528562	+	Silent	SNP	G	A	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	LRP1B	NM_018557	exon34	c.C5514T	p.C1838C	TAGTTGGCAGGAA	.	65	4	145	0	.	1315
FN1	2335	bcgsc.ca	37	2	216242924	216242924	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	FN1	NM_212482	exon35	c.C5684A	p.A1895D	CCCTGAGCTGGTC	.	35	3	52	0	.	521
.	9430	bcgsc.ca	37	3	75385329	75385329	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	TCTGAAGCACCTC	.	27	4	70	0	.	.
MYLK	4638	bcgsc.ca	37	3	123339082	123339082	+	Silent	SNP	C	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	MYLK	NM_053025	exon32	c.G5340A	p.P1780P	ATTGAGCGGGCTG	.	49	4	101	0	.	224
.	0	bcgsc.ca	37	5	105751501	105751501	+	RNA	SNP	G	C	C	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	CCATAGGATGGGG	.	33	9	30	0	.	.
C7orf10	79783	bcgsc.ca	37	7	40277290	40277290	+	Missense_Mutation	SNP	G	A	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	C7orf10	NM_001193313	exon7	c.G562A	p.A188T	GCCTCGGCTGTTT	.	67	4	86	0	.	99
ZFHX4	79776	bcgsc.ca	37	8	77761880	77761880	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	ZFHX4	NM_024721	exon8	c.C3778T	p.H1260Y	AAAATGCATCTCC	.	39	4	43	0	.	878
.	353196	bcgsc.ca	37	17	20397346	20397346	+	RNA	SNP	G	A	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	.	.	.	GGGGGCGCGGCAG	.	140	34	136	0	.	.
CDKL5	6792	bcgsc.ca	37	X	18622316	18622316	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	CDKL5	NM_003159	exon12	c.G1272T	p.K424N	CCCAAAGCCTTCA	.	13	3	66	0	.	124
THSD7B	80731	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	137814609	137814609	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA2T-01A-12D-A417-09	TCGA-W5-AA2T-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	312fb948-3690-45ce-90c9-db75807f9057	5e4d4d66-a2aa-4ca7-8fed-e566fc80cbb5	.	.	.	p.L253L	.	.	CAGACTGCCTCAT	.	64	16	84	0	.	.
