Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
ANKRD17	26057	hgsc.bcm.edu	37	4	73943167	73943167	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	ANKRD17,NS,carcinoma,0,1	ANKRD17	NM_032217	exon32	c.C7492A	p.Q2498K	TTGCTTGATGTTG	.	46	2	45	0	.	0
NONO	4841	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	70516449	70516449	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001145408	exon7	c.C685T	p.Q229X	ATGGACCAGTTAG	.	26	11	31	0	.	.
MAML3	55534	hgsc.bcm.edu	37	4	140811971	140811971	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	MAML3_ENST00000509479,NS,carcinoma,0,2	MAML3_ENST00000509479	NM_018717	exon2	c.C619T	p.P207S	TACTGGGCAAATT	.	61	3	54	0	.	0
DENND2A	27147	hgsc.bcm.edu	37	7	140246698	140246698	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DENND2A,right_upper_lobe,carcinoma,0,1	DENND2A	NM_015689	exon11	c.C2079A	p.A693A	AACCAGGGCAGGA	.	26	2	33	0	.	0
HPSE2	60495	hgsc.bcm.edu	37	10	100481428	100481428	+	Silent	SNP	G	G	A	rs142810016	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	HPSE2_ENST00000370546,NS,carcinoma,0,1	HPSE2_ENST00000370546	NM_001166246	exon5	c.C942T	p.I314I	GAGGGCGATGACA	.	57	4	78	0	.	0
SLC32A1	140679	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	20	37353459	37353459	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SLC32A1,lower_third,carcinoma,0,1	SLC32A1	NM_080552	exon1	c.T92A	p.M31K	CCAGGATGGGTTT	.	29	5	29	0	.	0
ABL2	27	hgsc.bcm.edu;ucsc.edu	37	1	179077425	179077425	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_007314	exon12	c.C2977T	p.L993L	GCTGCAGTAGTCT	.	32	4	19	0	.	.
DENND4B	9909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	153907309	153907309	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DENND4B_ENST00000361217,NS,carcinoma,0,6	DENND4B_ENST00000361217	NM_014856	exon18	c.G2700A	p.Q900Q	CTGTTGCTGCTGC	.	24	4	19	0	.	0
TEX15	56154	hgsc.bcm.edu	37	8	30690813	30690813	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_031271	exon4	c.C8359A	p.P2787T	GTCCTGGATGAAA	.	72	3	130	0	.	.
SLC7A2	6542	hgsc.bcm.edu	37	8	17401015	17401015	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SLC7A2,NS,carcinoma,0,1	SLC7A2	NM_001164771	exon2	c.C287T	p.A96V	TCCTCGCTGGGGA	.	31	2	49	0	.	0
ZYX	7791	hgsc.bcm.edu;broad.mit.edu	37	7	143079401	143079401	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_003461	exon3	c.G269A	p.G90E	CTCTGGGAGGTGC	.	26	4	35	0	.	.
CNDP1	84735	hgsc.bcm.edu	37	18	72251796	72251796	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CNDP1,NS,carcinoma,0,1	CNDP1	NM_032649	exon12	c.T1522A	p.X508K	CTCCATTAATCAC	.	30	2	27	0	.	0
DARS	1615	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	136664945	136664945	+	Silent	SNP	A	A	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001349	exon16	c.T1447C	p.L483L	TATGCAATCCCAG	.	64	16	70	0	.	.
GAS7	8522	hgsc.bcm.edu	37	17	9862568	9862568	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	GAS7,NS,carcinoma,0,1	GAS7	NM_201433	exon5	c.T476C	p.L159P	GATCCCAGGTTCT	.	35	2	41	0	.	0
CYP4A22	284541	hgsc.bcm.edu	37	1	47608985	47608985	+	Silent	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP4A22,colon,carcinoma,0,1	CYP4A22	NM_001010969	exon5	c.C555A	p.V185V	GGAGGTCTTTCAG	.	38	2	53	0	.	0
DDHD1	80821	hgsc.bcm.edu	37	14	53619480	53619480	+	Missense_Mutation	SNP	T	T	C	rs200797826	bycluster	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.,102	.	NM_001160147	exon1	c.A337G	p.S113G	AGGAGCTGCCGCC	.	10	0	11	2	.	202
ZNF547	284306	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	57888623	57888623	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_173631	exon4	c.C279T	p.S93S	ATGTAGCTCACTT	.	24	7	22	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2449	2449	+	RNA	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	CATAAGGAAAGGT	.	586	161	176	0	.	.
CYP11B1	1584	hgsc.bcm.edu	37	8	143957206	143957206	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP11B1,NS,carcinoma,0,1	CYP11B1	NM_000497	exon6	c.C1043A	p.A348E	CTGGCTGCGGCGG	.	33	2	53	0	.	0
SPHKAP	80309	hgsc.bcm.edu	37	2	228996762	228996762	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SPHKAP_ENST00000392056,NS,carcinoma,0,2	SPHKAP_ENST00000392056	NM_030623	exon2	c.G72A	p.P24P	CTGCTGCGGTTCC	.	41	2	46	0	.	0
DAB1	1600	hgsc.bcm.edu	37	1	57480714	57480714	+	Missense_Mutation	SNP	C	C	T	rs144347021		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DAB1,colon,carcinoma,0,3	DAB1	NM_021080	exon14	c.G1286A	p.R429H	GGTTTGCGGGAGG	.	39	3	26	0	0.000	0
PTPRG	5793	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	62268423	62268423	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_002841	exon28	c.C3934T	p.R1312W	GAAGTTCGGCACT	.	53	8	64	0	.	.
TRUB1	142940	hgsc.bcm.edu	37	10	116702491	116702491	+	Missense_Mutation	SNP	G	G	T	rs143607039	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	TRUB1,bladder,carcinoma,0,3	TRUB1	NM_139169	exon2	c.G374T	p.R125L	CAGCCCGAGGAGT	.	38	2	49	0	.	0
CNTNAP5	129684	hgsc.bcm.edu	37	2	125175026	125175026	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CNTNAP5,right_upper_lobe,carcinoma,0,1	CNTNAP5	NM_130773	exon4	c.G388T	p.A130S	ACCTTTGCAGGAA	.	28	2	36	0	.	0
DNAH5	1767	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	13919410	13919410	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DNAH5,NS,carcinoma,0,1	DNAH5	NM_001369	exon7	c.C850T	p.R284X	CCGCTCGTGGCCC	.	14	6	37	0	.	0
CST1	1469	hgsc.bcm.edu;ucsc.edu	37	20	23728528	23728528	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CST1,NS,carcinoma,0,2	CST1	NM_001898	exon3	c.G351A	p.L117L	AGAGCACAACTGT	.	32	4	63	1	.	0
RPSAP58	388524	hgsc.bcm.edu	37	19	24010294	24010294	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	RPSAP58_ENST00000496398,NS,carcinoma,0,40	RPSAP58_ENST00000496398	.	.	.	.	ACTAACCAGATCC	.	30	2	34	0	.	0
MFAP5	8076	hgsc.bcm.edu	37	12	8814663	8814663	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	MFAP5,NS,adenoma,0,1	MFAP5	NM_003480	exon2	c.C38A	p.A13D	AATGCAGCAAGAA	.	31	2	33	0	.	0
IFNGR1	3459	hgsc.bcm.edu	37	6	137525607	137525607	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	IFNGR1,NS,carcinoma,0,1	IFNGR1	NM_000416	exon4	c.G408T	p.K136N	CTCCTCCTTTCTG	.	39	3	42	0	.	0
CACNA1E	777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	181701852	181701852	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001205293	exon20	c.G2630A	p.G877D	CCCTGGGCCAGCG	.	62	20	39	0	.	.
FZD1	8321	hgsc.bcm.edu	37	7	90896134	90896134	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	FZD1,bladder,carcinoma,-2,1	FZD1	NM_003505	exon1	c.G1939T	p.V647F	ACTACAGTCTGAG	.	37	2	56	0	.	-2
MPDZ	8777	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	13168539	13168539	+	Missense_Mutation	SNP	T	T	C	rs372981122	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_003829	exon22	c.A3080G	p.D1027G	AAGCCATCTTTAT	.	54	11	50	0	.	.
CYP46A1	10858	hgsc.bcm.edu	37	14	100158142	100158142	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CYP46A1,NS,carcinoma,0,1	CYP46A1	NM_006668	exon3	c.C226T	p.R76W	GTTGTGCGGGTCA	.	51	3	63	0	.	0
PIGS	94005	hgsc.bcm.edu	37	17	26898495	26898495	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_033198	exon1	c.C20T	p.A7V	GTAGCCGCAGCCC	.	89	4	73	0	.	.
MYH15	22989	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	108147371	108147371	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_014981	exon28	c.C3730A	p.L1244M	GGGTCAGGAGGTC	.	42	4	44	0	.	.
ABCA6	23460	hgsc.bcm.edu;bcgsc.ca	37	17	67080420	67080420	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_080284	exon34	c.C4337T	p.T1446I	TGCCCTGTGGGGT	.	26	4	34	0	.	.
C11orf52	91894	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	11	111796803	111796803	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_080659	exon4	c.C252A	p.C84X	AGTGTGCAGCCGT	.	25	5	25	0	.	.
C6orf70	55780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	170179308	170179308	+	Silent	SNP	G	G	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	C6orf70,NS,carcinoma,0,1	C6orf70	NM_018341	exon17	c.G1770C	p.L590L	CAGCCTGATACTG	.	19	5	40	0	.	0
JMJD7	100137047	hgsc.bcm.edu	37	15	42129066	42129066	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	JMJD7-PLA2G4B_ENST00000542534,NS,carcinoma,0,2	JMJD7-PLA2G4B_ENST00000542534	NM_001114632	exon7	c.C790T	p.R264W	ACGGTGCGGGCCG	.	40	2	44	0	.	0
DNAAF2	55172	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	50092315	50092315	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_018139	exon3	c.A2459C	p.H820P	GTCACATGATCTT	.	84	14	77	0	.	.
ZNF415	55786	hgsc.bcm.edu	37	19	53612346	53612346	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	ZNF415,NS,carcinoma,0,1	ZNF415	NM_018355	exon4	c.C952A	p.H318N	TCTGATGTAGTGC	.	37	2	36	0	.	0
CDH20	28316	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	59174732	59174732	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_031891	exon5	c.C956A	p.A319E	ATGGTGCAGATGC	.	37	9	39	0	.	.
PCDHA5	56143	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	140202795	140202795	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_018908	exon1	c.C1435T	p.R479W	TCTGCACGGGACG	.	90	17	99	0	.	.
URB2	9816	hgsc.bcm.edu	37	1	229779333	229779333	+	Silent	SNP	T	T	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	URB2,colon,carcinoma,0,1	URB2	NM_014777	exon5	c.T3688C	p.L1230L	GGAGCCTTGTTCA	.	39	2	41	0	.	0
SMG6	23293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	1972077	1972077	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_017575	exon16	c.T3830G	p.L1277R	CCGATGAGGGGCA	.	22	6	17	0	.	.
USP9X	8239	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	41043819	41043819	+	Missense_Mutation	SNP	A	A	G	rs377036436		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001039591	exon23	c.A3449G	p.N1150S	ACCTCAATGCTCT	.	34	10	28	0	.	.
MFSD1	64747	hgsc.bcm.edu	37	3	158538046	158538046	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_022736	exon9	c.C941T	p.P314L	CCTTACCCCTGTG	.	78	3	89	0	.	.
CLIP4	79745	hgsc.bcm.edu;bcgsc.ca	37	2	29397281	29397281	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_024692	exon15	c.A1766G	p.K589R	CCCAAAAGGAGAT	.	90	4	102	0	.	.
FAM111B	374393	hgsc.bcm.edu	37	11	58891964	58891964	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.,2	.	NM_198947	exon4	c.T394A	p.Y132N	ATTGTTTATGAAG	.	48	2	45	1	.	84
STK31	56164	hgsc.bcm.edu	37	7	23826512	23826512	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	STK31,NS,carcinoma,0,1	STK31	NM_031414	exon20	c.C2456T	p.A819V	TGAATGCTGTTCA	.	49	2	57	0	.	0
CCT8L2	150160	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	17072592	17072592	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_014406	exon1	c.C849A	p.G283G	TAGCTGGCCTACT	.	30	7	42	0	.	.
PI15	51050	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	75737614	75737614	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015886	exon2	c.C130A	p.L44M	GCAGCTCTGAAAG	.	31	8	38	0	.	.
CDH13	1012	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	16	83520260	83520260	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001220488	exon8	c.G1101A	p.E367E	CCGAGAGGTGAGC	.	25	7	22	0	.	.
GLTSCR1	29998	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	48198732	48198732	+	Splice_Site	SNP	G	G	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015711	exon10	c.3186+1G>C	.	CTGCAGGTAAGGG	.	59	22	37	0	.	.
CTR9	9646	hgsc.bcm.edu	37	11	10794117	10794117	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CTR9,NS,carcinoma,0,1	CTR9	NM_014633	exon20	c.G2495T	p.R832L	GGGCACGCAAACA	.	37	2	52	0	.	0
CMA1	1215	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	24974805	24974805	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001836	exon5	c.C661T	p.R221W	CCGACCGTCCATA	.	29	7	23	0	.	.
ZC3H6	376940	hgsc.bcm.edu;bcgsc.ca	37	2	113069514	113069514	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_198581	exon5	c.G747T	p.E249D	TCAAGAGGTACTA	.	81	4	75	0	.	.
DLX5	1749	hgsc.bcm.edu	37	7	96653802	96653802	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	DLX5,colon,carcinoma,0,1	DLX5	NM_005221	exon1	c.C134A	p.S45Y	TAGTCAGAATCGG	.	43	2	56	0	.	0
SSPO	23145	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	7	149473162	149473162	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_198455	exon1	c.C32T	p.A11V	GGATGGCGTGGGC	.	26	4	31	0	.	.
SMARCC1	6599	hgsc.bcm.edu	37	3	47702803	47702803	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SMARCC1,mouth,carcinoma,0,1	SMARCC1	NM_003074	exon21	c.C2301A	p.P767P	CTCATCGGGCCCT	.	25	2	30	0	.	0
NUP50	10762	hgsc.bcm.edu	37	22	45574136	45574136	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_007172	exon5	c.G358T	p.G120C	GCAAATGGCCCTA	.	72	4	110	0	.	.
CACNA1F	778	hgsc.bcm.edu;broad.mit.edu	37	X	49079211	49079211	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_005183	exon16	c.C2205A	p.C735X	ATAGATGCACACC	.	9	6	7	0	.	.
PLCL2	23228	hgsc.bcm.edu	37	3	17084422	17084422	+	Silent	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015184	exon4	c.C2697T	p.I899I	AAAGATCGTACAT	.	69	3	77	0	.	.
KIAA1407	57577	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	3	113724730	113724730	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_020817	exon10	c.C1493A	p.T498K	GTTGTTGTTCTTC	.	17	4	8	0	.	.
STAB1	23166	hgsc.bcm.edu;ucsc.edu	37	3	52536050	52536050	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_015136	exon4	c.C360A	p.C120X	CCCATGCAATGGC	.	20	4	37	0	.	.
OR4M1	441670	hgsc.bcm.edu	37	14	20248958	20248958	+	Missense_Mutation	SNP	G	G	T	rs373976062	alternate_allele	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	OR4M1,NS,carcinoma,0,1	OR4M1	NM_001005500	exon1	c.G477T	p.Q159H	AATACAGGTGGCT	.	60	3	95	0	.	0
SOX6	55553	hgsc.bcm.edu	37	11	16208345	16208345	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	SOX6_ENST00000527619,NS,malignant_melanoma,0,2	SOX6_ENST00000527619	NM_001145819	exon5	c.G731T	p.R244L	TGTTGGCGAGCAA	.	29	2	31	0	.	0
C1orf173	127254	hgsc.bcm.edu	37	1	75039126	75039126	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	C1orf173,right_upper_lobe,carcinoma,0,1	C1orf173	NM_001002912	exon14	c.C2268A	p.N756K	TTCCTTGTTTGAG	.	21	2	38	0	.	0
CDC27	996	hgsc.bcm.edu	37	17	45214623	45214623	+	Missense_Mutation	SNP	G	G	A	rs75637741	bycluster	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	CDC27_ENST00000531206,rectum,carcinoma,0,2	CDC27_ENST00000531206	NM_001114091	exon14	c.C1826T	p.A609V	GTATAGGCATAAG	.	88	8	71	2	.	0
TENM2	57451	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	167674541	167674541	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001122679	exon27	c.G6570A	p.T2190T	TACCACGAAGTAC	.	31	8	34	0	.	.
TENM1	10178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	123839042	123839042	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	NM_001163278	exon5	c.A836G	p.N279S	GGGTAGTTCTGAC	.	31	10	25	0	.	.
OR1C1	26188	hgsc.bcm.edu	37	1	247920861	247920861	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	OR1C1,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	OR1C1	NM_012353	exon1	c.C848T	p.P283L	AGCATCGGAGCCA	.	21	3	38	0	.	0
.	0	broad.mit.edu	37	1	142727005	142727005	+	RNA	DEL	T	T	-	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	CATATATTTTATA	.	343	48	414	0	.	.
DSCAML1	57453	broad.mit.edu;ucsc.edu	37	11	117375684	117375684	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	DSCAML1	NM_020693	exon10	c.G2317A	p.V773M	CGTCCACCGAGCA	.	22	5	15	0	.	286
ATN1	1822	broad.mit.edu	37	12	7045653	7045653	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ATN1	NM_001007026	exon5	c.A1223C	p.Y408S	CCAGCTACCCCCA	.	38	7	45	2	.	95
CHEK2P2	0	broad.mit.edu	37	15	20488770	20488770	+	RNA	SNP	A	A	G	rs74751600		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	CACTCCAAGATTT	.	159	4	213	2	.	.
PKD1L2	114780	broad.mit.edu	37	16	81198502	81198502	+	RNA	DEL	C	C	-	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	PKD1L2	.	.	.	.	TTGATTCCCATAG	.	6	2	5	0	.	361
LOC541471	0	broad.mit.edu	37	2	112252464	112252464	+	RNA	SNP	G	G	A	rs1128295	bycluster	TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	TCACCAGGGAGAG	.	54	3	70	1	G|0.500;A|0.500	.
OTOF	9381	broad.mit.edu	37	2	26693554	26693556	+	In_Frame_Del	DEL	CTT	CTT	-	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	OTOF	NM_194248	exon32	c.3928_3930del	p.1310_1310del	AGTGCCCTTCTTC	.	6	2	5	0	.	524
SLC5A1	6523	broad.mit.edu	37	22	32500775	32500775	+	Silent	SNP	C	C	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SLC5A1	NM_000343	exon14	c.C1668G	p.L556L	GCAGCTCTACCGT	.	27	5	20	0	.	80
BOC	91653	broad.mit.edu	37	3	113002290	113002290	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	BOC	NM_033254	exon16	c.C2464T	p.P822S	CGACTGCCACCCC	.	28	3	39	0	.	139
.	0	broad.mit.edu;bcgsc.ca	37	3	159818606	159818606	+	RNA	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	GCCTGGCGCGGGG	.	30	10	36	0	.	.
SEMA6A	57556	broad.mit.edu;bcgsc.ca	37	5	115782915	115782915	+	Silent	SNP	G	G	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SEMA6A	NM_020796	exon19	c.C2487T	p.Y829Y	GTCCACGTACTCA	.	19	3	22	0	.	93
.	0	broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	142020924	142020924	+	RNA	SNP	C	C	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	GTGCTGCTTTGTC	.	25	5	25	0	.	.
CD72	971	broad.mit.edu;bcgsc.ca	37	9	35615948	35615948	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	CD72	NM_001782	exon5	c.G680A	p.G227D	GCTGAGCCGCATG	.	13	3	19	0	.	20
ID3	3399	ucsc.edu;bcgsc.ca	37	1	23885891	23885891	+	Silent	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ID3	NM_002167	exon1	c.C27A	p.G9G	GTAGCAGCCGCGC	.	27	4	40	0	.	29
PLCXD3	345557	ucsc.edu;bcgsc.ca	37	5	41510580	41510580	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	PLCXD3	NM_001005473	exon1	c.G49A	p.A17T	GAGTTGCCATCCA	.	24	4	29	0	.	86
NAV2	89797	ucsc.edu	37	11	19970265	19970265	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	NAV2	NM_001244963	exon11	c.G2353T	p.V785F	ACCAATGTCACCA	.	39	4	46	0	.	255
SLC38A6	145389	ucsc.edu;bcgsc.ca	37	14	61504396	61504396	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	SLC38A6	NM_153811	exon8	c.C619A	p.L207I	TTTGCTCTTGTGG	.	34	4	53	0	.	87
.	0	bcgsc.ca	37	2	27789781	27789781	+	Missense_Mutation	SNP	T	G	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	CTCATCTTCCTGT	.	19	7	28	0	.	.
.	440915	bcgsc.ca	37	2	132369152	132369152	+	RNA	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	ACTCATGTGGGAT	.	145	5	195	0	.	.
ECM2	1842	bcgsc.ca	37	9	95264897	95264897	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	ECM2	NM_001393	exon8	c.C1502A	p.T501N	ATTTCAGTTATTT	.	33	3	39	0	.	147
KIAA1958	158405	bcgsc.ca	37	9	115337025	115337025	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	KIAA1958	NM_133465	exon2	c.G665T	p.G222V	CAGGAGGAGTAGA	.	14	3	22	0	.	52
TPP1	1200	bcgsc.ca	37	11	6638859	6638859	+	Silent	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	TPP1	NM_000391	exon4	c.C378A	p.I126I	TCACCGGATGCTC	.	13	3	18	0	.	71
.	81136	bcgsc.ca	37	13	68476737	68476737	+	RNA	SNP	C	A	A	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	TGACTGCGATGGC	.	52	17	75	0	.	.
TSHZ2	128553	bcgsc.ca	37	20	51872335	51872335	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	TSHZ2,NS,carcinoma,-1,1	TSHZ2	NM_173485	exon2	c.G2338T	p.A780S	TCGCAAGCACAAT	.	20	3	28	0	.	209
TTC3	7267	bcgsc.ca	37	21	38470262	38470262	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	TTC3	.	.	.	.	TAAAAAGAAGAAA	.	24	4	32	0	.	182
LOC388849	0	bcgsc.ca	37	22	20137749	20137749	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	.	.	.	.	.	GCTGCTCCCGAAG	.	44	7	44	0	.	.
MAGED1	9500	bcgsc.ca	37	X	51640347	51640347	+	Missense_Mutation	SNP	A	G	G	novel		TCGA-W5-AA33-01A-11D-A417-09	TCGA-W5-AA33-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	f23b3d0d-26a5-4adf-8aec-4994d094465b	02e2d8b9-8b5a-4bae-8615-76c46d68f44c	.	MAGED1	NM_001005333	exon6	c.A1634G	p.K545R	ACACAAAGGTGCC	.	22	3	33	0	.	84
