Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
FBRSL1	57666	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	133102390	133102396	+	Frame_Shift_Del	DEL	CCCGGGA	CCCGGGA	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	CCCGGGA	CCCGGGA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001142641	exon3	c.559_565del	p.187_189del	CCAGCTCCCGGGA	.	92	10	105	0	.	.
PRKAA2	5563	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	1	57140104	57140107	+	Frame_Shift_Del	DEL	AGAC	AGAC	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	AGAC	AGAC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006252	exon2	c.144_147del	p.48_49del	TTAAATAGACAGA	.	273	40	173	0	.	.
HCN1	348980	hgsc.bcm.edu	37	5	45267285	45267286	+	Frame_Shift_Ins	INS	-	-	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_021072	exon7	c.1689_1690insC	p.S563fs	GGAAAGTGAGTAA	.	181	119	97	0	.	.
SMARCD1	6602	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	12	50482343	50482359	+	Frame_Shift_Del	DEL	AAGTTCTCTTCCTTTTT	AAGTTCTCTTCCTTTTT	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	AAGTTCTCTTCCTTTTT	AAGTTCTCTTCCTTTTT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003076	exon6	c.693_709del	p.231_237del	AAGAGGAAGTTCT	.	36	14	49	0	.	.
TRAPPC11	60684	hgsc.bcm.edu;bcgsc.ca	37	4	184588276	184588276	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_021942	exon4	c.G438T	p.L146F	CCCTTTGCCCCCA	.	67	4	87	0	.	.
C20orf194	25943	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	20	3240180	3240180	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001009984	exon33	c.C3001A	p.P1001T	GACTTGGCTTGAT	.	27	4	26	0	.	.
SMIM3	85027	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	150175154	150175154	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_032947	exon2	c.G152A	p.R51Q	GCATGCGGACTCA	.	20	9	25	0	.	.
KRT81	3887	hgsc.bcm.edu	37	12	52685191	52685191	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_002281	exon1	c.C59T	p.P20L	GGCCGCGGCCCGC	.	84	4	40	0	.	.
HSPA4L	22824	hgsc.bcm.edu	37	4	128743939	128743939	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	HSPA4L,colon,carcinoma,0,1	HSPA4L	NM_014278	exon15	c.C1828T	p.Q610X	ATCATGCAAGATA	.	41	2	76	0	.	0
CDC42BPG	55561	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	64597150	64597150	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017525	exon30	c.G3760A	p.E1254K	CAGCCTCGTTGAG	.	29	5	27	0	.	.
KIAA1586	57691	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	56918360	56918360	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020931	exon4	c.G1063C	p.V355L	GAATTGGTGTCAA	.	65	27	73	0	.	.
SLC41A3	54946	hgsc.bcm.edu	37	3	125725323	125725323	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SLC41A3_ENST00000315891,NS,carcinoma,0,1	SLC41A3_ENST00000315891	NM_001008485	exon12	c.G1451A	p.C484Y	TGAGTGCAGATGA	.	40	2	39	0	.	0
GTDC1	79712	hgsc.bcm.edu	37	2	144728223	144728223	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001006636	exon8	c.C982A	p.P328T	TACCTGGGACATC	.	88	4	87	0	.	.
ND6	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	14487	14487	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	ENST00000361681	exon1	c.A187G	p.M63V	CCATCATTCCCCC	.	445	427	341	0	.	.
CPXM1	56265	hgsc.bcm.edu	37	20	2777840	2777840	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CPXM1,NS,carcinoma,0,1	CPXM1	NM_001184699	exon6	c.C830A	p.S277X	CCACCTGAGACTG	.	50	2	39	0	.	0
CENPB	1059	hgsc.bcm.edu;broad.mit.edu	37	20	3765895	3765895	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CENPB,NS,carcinoma,0,1	CENPB	NM_001810	exon1	c.G1236A	p.E412E	TTCTTCCTCCTCC	.	24	3	12	0	.	0
BHMT2	23743	hgsc.bcm.edu	37	5	78376673	78376673	+	Missense_Mutation	SNP	G	G	T	rs373649954	alternate_allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	BHMT2,NS,NS,0,1	BHMT2	NM_017614	exon4	c.G422T	p.W141L	TTGCCTGGAAAAA	.	48	2	60	0	.	0
CACNG5	27091	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	64873577	64873577	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_145811	exon1	c.C127T	p.P43S	ATTGTGCCCCAGA	.	30	11	16	0	.	.
MYH7	4625	hgsc.bcm.edu	37	14	23896926	23896926	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MYH7,NS,carcinoma,0,1	MYH7	NM_000257	exon16	c.G1756A	p.V586M	AGTCCACGATGCC	.	37	2	56	0	.	0
TBC1D3P5	440419	hgsc.bcm.edu	37	17	25752452	25752452	+	RNA	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GCTCCACATCTTG	.	66	8	44	0	.	.
SLITRK2	84631	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	144904919	144904919	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001144005	exon5	c.C976T	p.P326S	TTTGGACCCATCA	.	44	5	77	0	.	.
T	6862	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	166580132	166580132	+	Missense_Mutation	SNP	G	G	A	rs368969464		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003181	exon3	c.C419T	p.P140L	GAGACGGGAGCCT	.	27	7	27	0	.	.
NEU4	129807	hgsc.bcm.edu	37	2	242757381	242757381	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001167599	exon4	c.G501A	p.W167X	AGACTGGGCCACA	.	23	6	7	0	.	.
POLR3C	10623	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	145601830	145601830	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006468	exon6	c.A701G	p.Y234C	TGCCAATAAATCC	.	51	22	41	0	.	.
SLC9A7	84679	hgsc.bcm.edu	37	X	46541898	46541898	+	Missense_Mutation	SNP	G	G	T	rs145339243	alternate_allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001257291	exon2	c.C398A	p.T133N	TCCTGAGTGCAGC	.	48	4	51	0	.	.
ADAM12	8038	hgsc.bcm.edu	37	10	127806650	127806650	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	ADAM12_ENST00000368679,colon,carcinoma,0,3	ADAM12_ENST00000368679	NM_021641	exon6	c.C569A	p.A190E	TTCTTTGCAGCGA	.	44	2	46	0	.	0
MYT1L	23040	hgsc.bcm.edu;bcgsc.ca	37	2	1926757	1926757	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015025	exon10	c.G784A	p.V262M	AGTCCACTGTTTC	.	86	4	81	0	.	.
MBNL3	55796	hgsc.bcm.edu	37	X	131526199	131526199	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018388	exon3	c.C506A	p.P169Q	AGTTTTGGGCCAA	.	99	3	117	0	.	.
OR5P2	120065	hgsc.bcm.edu	37	11	7818383	7818383	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.,7	.	NM_153444	exon1	c.C107G	p.S36C	TTACCAGATAGGA	.	27	2	13	1	.	68
RECQL4	9401	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	8	145739898	145739898	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004260	exon10	c.G1632A	p.L544L	CGGTGGCAGGCCA	.	31	16	27	0	.	.
PTCHD2	57540	hgsc.bcm.edu	37	1	11596598	11596598	+	Missense_Mutation	SNP	C	C	T	rs201820638	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PTCHD2,NS,carcinoma,0,1	PTCHD2	NM_020780	exon21	c.C4034T	p.A1345V	TCATGGCGCCCAG	.	19	2	22	0	0.001	0
OR2G3	81469	hgsc.bcm.edu	37	1	247769640	247769640	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	OR2G3,NS,carcinoma,0,1	OR2G3	NM_001001914	exon1	c.C753A	p.F251L	TATATTCTATGGC	.	45	2	27	0	.	0
EPPK1	83481	hgsc.bcm.edu	37	8	144940742	144940742	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_031308	exon1	c.C6680T	p.A2227V	ACGCCCGCGATGC	.	70	5	43	0	.	.
MAML2	84441	hgsc.bcm.edu;bcgsc.ca	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	39	4	51	0	.	0
FRY	10129	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	32753081	32753081	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_023037	exon22	c.C2782A	p.P928T	GCAAAACCCAGTA	.	77	21	77	0	.	.
KCNK17	89822	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	39278778	39278778	+	Silent	SNP	G	G	A	rs368724952		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135111	exon2	c.C243T	p.V81V	TTGGACGACATCC	.	30	4	27	0	.	.
DGKI	9162	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	137150763	137150763	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004717	exon27	c.A2527G	p.M843V	TCTCCATCACAAA	.	45	17	49	0	.	.
UBE2F-SCLY	0	hgsc.bcm.edu	37	2	238991562	238991562	+	RNA	SNP	T	T	C	rs367917223		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	TCTTTCTTTTTTT	.	16	4	8	1	.	.
PPM1G	5496	hgsc.bcm.edu	37	2	27605369	27605369	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PPM1G,NS,carcinoma,0,1	PPM1G	NM_177983	exon8	c.C1305A	p.F435L	GACCATGAATTCA	.	31	2	35	0	.	0
ZNF829	374899	hgsc.bcm.edu;bcgsc.ca	37	19	37382535	37382535	+	Silent	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001171979	exon6	c.G1401T	p.G467G	GGCCTTCCCACAT	.	62	4	66	0	.	.
XPNPEP2	7512	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	X	128881717	128881717	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003399	exon7	c.G625T	p.E209X	CTGCAGGAGGCAT	.	43	5	46	0	.	.
AIMP2	7965	hgsc.bcm.edu;bcgsc.ca	37	7	6062935	6062935	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006303	exon4	c.G576T	p.V192V	TTCAGTGCCGAAG	.	62	4	42	0	.	.
TINF2	26277	hgsc.bcm.edu	37	14	24710311	24710311	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TINF2_ENST00000267415,caecum,carcinoma,0,2	TINF2_ENST00000267415	NM_001099274	exon5	c.G519A	p.V173V	ACTCAGCACATCC	.	31	2	45	0	.	0
TMEM43	79188	hgsc.bcm.edu	37	3	14183116	14183116	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_024334	exon12	c.G1024T	p.D342Y	TTCCGAGACCTGG	.	45	3	52	0	.	.
SIDT1	54847	hgsc.bcm.edu	37	3	113321990	113321990	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SIDT1,mucosal,malignant_melanoma,0,1	SIDT1	NM_017699	exon12	c.G1256T	p.R419L	TCATCCGGACCAA	.	26	2	40	0	.	0
ARAF	369	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	47426127	47426127	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001256196	exon7	c.C656T	p.P219L	CCACTCCCAACGT	.	54	36	66	0	.	.
NFE2L2	4780	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	178098799	178098799	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	NFE2L2,NS,carcinoma,0,9	NFE2L2	NM_006164	exon2	c.A246T	p.E82D	GAGAAATTCACCT	.	94	45	68	0	.	0
HLA-B	3106	hgsc.bcm.edu	37	6	31324018	31324018	+	Missense_Mutation	SNP	G	G	A	rs41542712	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_005514	exon3	c.C545T	p.A182V	AGGTAGGCTCTCC	.	57	7	29	0	0.001	.
IL12RB2	3595	hgsc.bcm.edu	37	1	67787288	67787288	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IL12RB2,NS,carcinoma,0,1	IL12RB2	NM_001559	exon3	c.C80A	p.A27E	CAGATGCGTGCAA	.	67	3	40	0	.	0
EML4	27436	hgsc.bcm.edu	37	2	42483696	42483696	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001145076	exon3	c.T264C	p.G88G	AAGTGGTGCAAAC	.	110	5	93	0	.	.
ZMIZ2	83637	hgsc.bcm.edu	37	7	44806150	44806150	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_031449	exon18	c.T2543C	p.L848S	AGTCCTTGGGCCA	.	91	3	60	0	.	.
TOM1	10043	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	22	35719501	35719501	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135732	exon5	c.G379A	p.A127T	GCTGACGCGTTCC	.	14	4	10	0	.	.
IFITM3	10410	hgsc.bcm.edu	37	11	320723	320723	+	Missense_Mutation	SNP	C	C	T	rs56227617		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IFITM3,brain,glioma,0,1	IFITM3	NM_021034	exon1	c.G91A	p.V31M	CCAGCACAGCCAC	.	44	4	20	1	.	0
WHSC1	7468	hgsc.bcm.edu;bcgsc.ca	37	4	1918727	1918727	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_133335	exon4	c.G890T	p.S297I	AGGAAAGTGCCAA	.	74	4	98	0	.	.
JOSD1	9929	hgsc.bcm.edu	37	22	39085046	39085046	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	JOSD1,NS,lymphoid_neoplasm,+2,1	JOSD1	NM_014876	exon3	c.C403A	p.L135I	TTTTGAGGGGCAG	.	34	2	37	0	.	+2
ZNF676	163223	hgsc.bcm.edu	37	19	22363737	22363737	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001001411	exon3	c.G782C	p.G261A	CTAAATCCTTTGC	.	80	4	60	0	.	.
RBL1	5933	hgsc.bcm.edu	37	20	35651208	35651208	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	RBL1,NS,carcinoma,0,1	RBL1	NM_183404	exon17	c.C2404T	p.R802C	GTAAGCGTACACT	.	73	3	56	0	.	0
DNAAF3	352909	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	19	55672774	55672774	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001256714	exon7	c.C880T	p.H294Y	GGGGGTGAATGAC	.	74	19	60	0	.	.
HECW2	57520	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	197138745	197138745	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020760	exon16	c.G3238A	p.A1080T	ACATACCCACTGG	.	40	19	45	0	.	.
HEPH	9843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	65476101	65476101	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_138737	exon17	c.C2987T	p.T996I	TGGCAACCCATGG	.	55	15	70	0	.	.
SH3GLB1	51100	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	87200770	87200770	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001206651	exon8	c.C756G	p.H252Q	CCATCACCTTCGC	.	89	15	72	0	.	.
DSPP	1834	hgsc.bcm.edu	37	4	88537123	88537123	+	Silent	SNP	C	C	T	rs372453629		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	DSPP,NS,carcinoma,0,2	DSPP	NM_014208	exon5	c.C3309T	p.S1103S	CAGCAGCGACAGC	.	2	2	7	2	.	0
SLC9A3	6550	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	488540	488540	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004174	exon3	c.C566A	p.A189E	ACAGCCGCCATGA	.	169	39	74	0	.	.
SMC6	79677	hgsc.bcm.edu	37	2	17906563	17906563	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.,1	.	NM_001142286	exon9	c.G687A	p.T229T	TTCTTTCGTTTCC	.	60	3	35	0	.	102
C3P1	388503	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10157072	10157072	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GAGGCTGGGCTCC	.	36	19	21	0	.	.
C1orf112	55732	hgsc.bcm.edu;bcgsc.ca	37	1	169796306	169796306	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018186	exon11	c.G963A	p.Q321Q	ATTTCAGCCTTTC	.	86	4	65	0	.	.
ST3GAL3	6487	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	44290442	44290442	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_174963	exon5	c.C294T	p.D98D	CCTTGACTGCATA	.	99	18	83	0	.	.
AGAP2	116986	hgsc.bcm.edu	37	12	58131312	58131312	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	AGAP2_ENST00000547588,NS,carcinoma,0,1	AGAP2_ENST00000547588	NM_001122772	exon1	c.G718A	p.A240T	CGGCGGCGGTGGC	.	38	2	30	0	.	0
PPA1	5464	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	71978550	71978550	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_021129	exon3	c.A147G	p.E49E	TGGTACTTCAACT	.	38	6	43	0	.	.
EEF1E1	9521	hgsc.bcm.edu;bcgsc.ca	37	6	8097530	8097530	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001135650	exon2	c.C258A	p.S86S	TTTACTGGAGTGC	.	82	4	66	0	.	.
SGK2	10110	hgsc.bcm.edu;bcgsc.ca	37	20	42213625	42213625	+	Missense_Mutation	SNP	C	C	T	rs140923021		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_016276	exon12	c.C1253T	p.A418V	CTTATGCGCCAGA	.	62	4	57	0	0.000	.
TULP4	56995	hgsc.bcm.edu	37	6	158924680	158924680	+	Missense_Mutation	SNP	C	C	T	rs200432004		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TULP4,NS,malignant_melanoma,0,1	TULP4	NM_020245	exon13	c.C3985T	p.R1329W	CCCCAGCGGACAG	.	69	3	61	0	.	0
NEB	4703	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	152384096	152384096	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001271208	exon148	c.G21844C	p.D7282H	TATAGTCCAGCTG	.	38	8	51	0	.	.
TM4SF5	9032	hgsc.bcm.edu	37	17	4675353	4675353	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TM4SF5,NS,carcinoma,0,1	TM4SF5	NM_003963	exon1	c.C136T	p.Q46X	AGCTTGCAAGTCT	.	50	3	38	0	.	0
CCDC103	388389	hgsc.bcm.edu	37	17	42979874	42979874	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CCDC103,colon,carcinoma,0,1	CCDC103	NM_001258395	exon4	c.G418T	p.G140X	GATGTGGGATTTG	.	30	2	21	0	.	0
TDRD9	122402	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	14	104471611	104471611	+	Missense_Mutation	SNP	C	C	T	rs199531888		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TDRD9_ENST00000409874,NS,carcinoma,0,2	TDRD9_ENST00000409874	NM_153046	exon15	c.C1582T	p.R528C	TTTCAGCGTTGTC	.	41	4	51	0	0.001	0
CDHR2	54825	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	5	176002399	176002399	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017675	exon9	c.C740A	p.S247X	TTTACTCGGCCTC	.	33	14	16	0	.	.
ZC3H7B	23264	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	22	41723243	41723243	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_017590	exon5	c.A319G	p.K107E	AGCGAGAAGGCGC	.	35	11	37	0	.	.
GPR123	84435	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	10	134940752	134940752	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001083909	exon6	c.C417A	p.S139R	CGTCAGCGGAGGG	.	73	35	70	0	.	.
MGAM	8972	hgsc.bcm.edu	37	7	141794453	141794453	+	Missense_Mutation	SNP	A	A	T	rs202001107		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MGAM_ENST00000549489,NS,carcinoma,0,3	MGAM_ENST00000549489	NM_004668	exon39	c.A4652T	p.Y1551F	TATCCTATGTGAG	.	60	3	41	2	.	0
MICAL3	57553	hgsc.bcm.edu;bcgsc.ca	37	22	18370200	18370200	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015241	exon14	c.C1893A	p.D631E	CAAGGTGTCTGGG	.	57	4	41	0	.	.
MACF1	23499	hgsc.bcm.edu	37	1	39903515	39903515	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_012090	exon68	c.C11878T	p.P3960S	ATGCCACCACTGA	.	59	4	42	0	.	.
ZNF134	7693	hgsc.bcm.edu	37	19	58132757	58132757	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003435	exon3	c.G1270A	p.A424T	CACACTGCAGGCA	.	63	4	74	0	.	.
TCHH	7062	hgsc.bcm.edu	37	1	152082449	152082449	+	Missense_Mutation	SNP	T	T	C	rs199978971		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TCHH,NS,carcinoma,0,1	TCHH	NM_007113	exon3	c.A3244G	p.K1082E	CTTCCTTCCGATA	.	67	3	35	1	.	0
PAGE2B	389860	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	55102523	55102523	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001015038	exon2	c.G49A	p.D17N	GGAAATGACCAAG	.	73	45	109	0	.	.
TPT1-AS1	100190939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	13	45957312	45957312	+	RNA	SNP	A	A	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	TAAGGTACCTGCC	.	40	6	49	0	.	.
BAP1	8314	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	52442599	52442599	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_004656	exon4	c.T146C	p.L49P	TTGAACAGGAAGA	.	20	16	38	0	.	.
ZNF542	147947	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	19	56888251	56888251	+	RNA	SNP	A	A	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GTGCAGAGATTAA	.	21	8	24	0	.	.
SUPT7L	9913	hgsc.bcm.edu	37	2	27878431	27878431	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SUPT7L,NS,carcinoma,0,1	SUPT7L	NM_014860	exon5	c.C783A	p.V261V	AGGATTGACAATC	.	25	2	31	0	.	0
FAM50B	26240	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	3850817	3850817	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_012135	exon2	c.G772A	p.A258T	GCCAGGGCGAGGG	.	30	8	31	0	.	.
SLC9A9	285195	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	143567100	143567100	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_173653	exon1	c.T65C	p.V22A	AGCTCCACCGCTC	.	66	14	108	0	.	.
SNCG	6623	hgsc.bcm.edu;bcgsc.ca	37	10	88718478	88718478	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003087	exon1	c.C24A	p.F8L	GGGCTTCTCCATC	.	69	4	43	0	.	.
UNC79	57578	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	14	94088818	94088818	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020818	exon30	c.C4708T	p.R1570X	CAAAAACGAGACC	.	24	20	37	0	.	.
FAM71A	149647	hgsc.bcm.edu	37	1	212798528	212798528	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FAM71A,NS,carcinoma,0,1	FAM71A	NM_153606	exon1	c.G309T	p.Q103H	TGGCCAGGCCACC	.	54	3	28	0	.	0
TTN	7273	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	179437209	179437209	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001267550	exon326	c.A73650T	p.K24550N	CTTGATTTTTGAA	.	44	10	35	0	.	.
F2RL1	2150	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	76128777	76128777	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	F2RL1,NS,carcinoma,0,1	F2RL1	NM_005242	exon2	c.C345T	p.A115A	CATGGCCAATCTG	.	27	9	35	0	.	0
GSK3A	2931	hgsc.bcm.edu	37	19	42737289	42737289	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_019884	exon8	c.T1071C	p.P357P	AATCTGAGGGAAC	.	79	4	58	0	.	.
TEX2	55852	hgsc.bcm.edu;broad.mit.edu	37	17	62271115	62271115	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_018469	exon4	c.G1980A	p.P660P	AGCTGGCGGCTTC	.	81	4	69	0	.	.
MIR548N	100302152	hgsc.bcm.edu	37	2	179348065	179348065	+	RNA	SNP	A	A	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	AAAAGAATTAAAA	.	123	4	72	0	.	.
CHTF18	63922	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	16	845949	845949	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_022092	exon18	c.G2328A	p.V776V	CTAGGTGAGCACA	.	20	7	16	0	.	.
ZIC3	7547	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	X	136649399	136649399	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003413	exon1	c.G549A	p.Q183Q	CAACCAGGTCCAC	.	28	11	36	0	.	.
ATM	472	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	108121693	108121693	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_000051	exon10	c.C1501A	p.Q501K	CAAATACAAGCTG	.	56	37	100	0	.	.
HDGF	3068	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	156713449	156713449	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001126050	exon5	c.T759A	p.H253Q	CCTCTCATGATCT	.	50	10	37	0	.	.
GLTP	51228	hgsc.bcm.edu	37	12	110295408	110295408	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	GLTP,mouth,carcinoma,0,1	GLTP	NM_016433	exon3	c.C219A	p.I73I	CTCCAGGATGTTC	.	42	2	39	0	.	0
IRF9	10379	hgsc.bcm.edu	37	14	24632181	24632181	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	IRF9,caecum,carcinoma,0,1	IRF9	NM_006084	exon3	c.G187A	p.A63T	GCCTGGGCAATAT	.	44	2	49	0	.	0
SLC39A5	283375	hgsc.bcm.edu;bcgsc.ca	37	12	56630250	56630250	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_173596	exon9	c.C1016T	p.A339V	GGATGGCCCTTCA	.	71	4	74	0	.	.
PPM1D	8493	hgsc.bcm.edu	37	17	58740756	58740756	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_003620	exon6	c.G1661T	p.G554V	GAAATGGCTTAAG	.	66	3	51	0	.	.
BAI3	577	hgsc.bcm.edu	37	6	69665993	69665993	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	BAI3,colon,carcinoma,0,1	BAI3	NM_001704	exon7	c.C1273T	p.R425W	AGAAGCCGGCAGT	.	11	2	40	0	.	0
DENND4B	9909	hgsc.bcm.edu	37	1	153907303	153907303	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	DENND4B_ENST00000361217,bladder,carcinoma,0,2	DENND4B_ENST00000361217	NM_014856	exon18	c.G2706A	p.Q902Q	CTGCTGCTGTTGC	.	34	2	16	0	.	0
TRIM39	56658	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	30303613	30303613	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_172016	exon5	c.G641A	p.R214Q	TTTCACGACTGGA	.	32	14	26	0	.	.
LRRIQ4	344657	hgsc.bcm.edu	37	3	169555341	169555341	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	LRRIQ4,rectum,carcinoma,0,1	LRRIQ4	NM_001080460	exon5	c.G1605T	p.K535N	ACAAAAGAAAGGA	.	47	3	85	0	.	0
ARHGAP21	57584	hgsc.bcm.edu;bcgsc.ca	37	10	24889838	24889838	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_020824	exon14	c.C2869T	p.P957S	TCCATGGCCGAAT	.	81	4	84	0	.	.
EP400	57634	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	132504692	132504692	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_015409	exon22	c.C4376G	p.S1459C	CGGCCTCTGCTGC	.	16	15	24	0	.	.
MLL3	58508	hgsc.bcm.edu	37	7	151921114	151921114	+	Nonsense_Mutation	SNP	A	A	T	rs4024337		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MLL3_ENST00000355193,NS,carcinoma,0,10	MLL3_ENST00000355193	NM_170606	exon20	c.T3309A	p.C1103X	TTGTCTACATTGC	.	98	5	89	1	.	0
EGFLAM	133584	hgsc.bcm.edu	37	5	38407067	38407067	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001205301	exon8	c.T966C	p.A322A	GGTGGCTCCCCAG	.	80	4	30	0	.	.
KLRF1	51348	hgsc.bcm.edu	37	12	9985911	9985911	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_016523	exon3	c.T197C	p.V66A	AGGGAGTATTGCT	.	83	4	78	0	.	.
HLA-DMA	3108	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	32918505	32918505	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006120	exon2	c.C164A	p.P55H	ACACTGGGACTCC	.	25	11	20	0	.	.
ATAD5	79915	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	29220847	29220847	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_024857	exon21	c.T4976C	p.L1659S	CCTTCTTAGATGC	.	111	24	64	0	.	.
CKAP4	10970	hgsc.bcm.edu	37	12	106633701	106633701	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	CKAP4,NS,carcinoma,0,1	CKAP4	NM_006825	exon2	c.G910T	p.E304X	CCCACTCTCTGGA	.	55	3	40	0	.	0
TMEM110-MUSTN1	100526772	hgsc.bcm.edu	37	3	52876847	52876847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.,1	.	NM_001198974	exon7	c.C748A	p.H250N	CCTCGTGGGATGC	.	36	3	45	0	.	.
PCNT	5116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	47769730	47769730	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006031	exon8	c.T1340C	p.L447P	AACAGCTGGAGGT	.	52	34	79	0	.	.
KIAA0368	23392	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	114192870	114192870	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_001080398	exon10	c.T1421C	p.M474T	TTGTACATCTTAT	.	22	8	43	0	.	.
IPO5	3843	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	13	98652792	98652792	+	Splice_Site	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_002271	exon13	c.1056-1G>A	.	TGTTTAGCAATGC	.	38	10	30	0	.	.
CAMTA1	23261	broad.mit.edu	37	1	7811427	7811427	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	CAMTA1	NM_015215	exon20	c.G4858A	p.A1620T	CGGACGGCTGTGA	.	28	3	44	0	.	226
FMN2	56776	broad.mit.edu	37	1	240341360	240341360	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	FMN2	NM_020066	exon3	c.C1922T	p.A641V	AGGATGCTGAAAC	.	67	3	50	0	.	451
.	0	broad.mit.edu	37	1	202827070	202827071	+	RNA	DEL	TT	TT	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	TCTTTCTTTTTTT	.	6	2	5	0	.	.
.	0	broad.mit.edu	37	1	143663875	143663875	+	RNA	SNP	G	G	T	rs487704	by2hit2allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GACACAGACCTGA	.	79	4	59	1	G|1.000;|0.000	.
C10orf128	170371	broad.mit.edu	37	10	50396360	50396360	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	C10orf128	NM_001010863	exon1	c.C22T	p.L8L	TCCTCAGCATGCT	.	9	3	10	0	.	20
FAM35A	54537	broad.mit.edu	37	10	88911830	88911830	+	Missense_Mutation	SNP	C	C	A	rs3129516		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FAM35A,NS,carcinoma,0,3	FAM35A	NM_019054	exon3	c.C719A	p.T240K	CTGATACAGAATT	.	219	4	214	1	.	48
SKIDA1	387640	broad.mit.edu	37	10	21805720	21805720	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_207371	exon4	c.T1032C	p.H344H	GTGGTGATGGTGG	.	17	3	21	0	.	.
.	0	broad.mit.edu	37	14	22887281	22887281	+	RNA	SNP	C	C	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	AGTTCCCAGGCCT	.	14	6	23	0	.	.
.	0	broad.mit.edu	37	15	20563408	20563417	+	RNA	DEL	CCTCTCCCTT	CCTCTCCCTT	-	rs59811558		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	CCAGAGCCTCTCC	.	52	8	45	0	.	.
DOK4	0	broad.mit.edu;bcgsc.ca	37	16	57509842	57509842	+	Missense_Mutation	SNP	G	G	A	rs368504381		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	DOK4	NM_018110	exon3	c.C94T	p.R32W	ATTTCCGGAACAC	.	72	6	70	1	.	19
.	0	broad.mit.edu	37	16	32152597	32152597	+	RNA	DEL	A	A	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GCACATAATGAGC	.	44	7	43	1	.	.
.	0	broad.mit.edu	37	17	45125501	45125501	+	RNA	SNP	A	A	G	rs3175679		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	AGATGAAGAAAAA	.	57	3	39	0	A|1.000;|0.000	.
.	0	broad.mit.edu;ucsc.edu	37	17	7960608	7960608	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	TGTTTCCAACAGT	.	76	30	67	0	.	.
ZNF98	148198	broad.mit.edu	37	19	22586259	22586259	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	ZNF98_ENST00000357774,right_lower_lobe,carcinoma,+1,2	ZNF98	NM_001098626	exon2	c.G86A	p.C29Y	TCCAGGCATTGCC	.	84	5	87	1	.	230
ANKRD20A8P	0	broad.mit.edu	37	2	95518658	95518658	+	RNA	DEL	A	A	-	rs375429617		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	ATTAAGAAAAAAA	.	9	4	5	0	.	.
KIAA1715	80856	broad.mit.edu	37	2	176794915	176794915	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	KIAA1715	NM_030650	exon13	c.A1067G	p.H356R	ACATCGTGTTCTA	.	36	4	43	0	.	61
KIAA1715	80856	broad.mit.edu	37	2	176794918	176794918	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	KIAA1715	NM_030650	exon13	c.A1064G	p.E355G	TCGTGTTCTAAAG	.	35	4	40	0	.	61
FAM86JP	0	broad.mit.edu	37	3	125648088	125648088	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GCCTCCGGAAAAG	.	36	6	50	2	.	.
SOX2	6657	broad.mit.edu;bcgsc.ca	37	3	181430207	181430226	+	Frame_Shift_Del	DEL	GCGGCGGCGGCAACTCCACC	GCGGCGGCGGCAACTCCACC	-	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SOX2	NM_003106	exon1	c.59_78del	p.20_26del	CGGGGGGCGGCGG	.	12	8	25	0	.	28
RSPH10B	222967	broad.mit.edu;bcgsc.ca	37	7	6006556	6006556	+	Silent	SNP	A	A	G	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	RSPH10B,NS,carcinoma,-2,1	RSPH10B	NM_173565	exon3	c.T192C	p.V64V	CTGCTGAACGTTT	.	111	15	103	0	.	28
COX2	4513	broad.mit.edu;bcgsc.ca	37	MT	8251	8251	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	ENST00000361739	exon1	c.G666A	p.G222G	AATAGGGCCCGTA	.	40	37	37	0	.	.
.	0	ucsc.edu;bcgsc.ca	37	2	203055059	203055059	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	CCTTTGCCTCAGA	.	39	4	28	0	.	.
TMEM128	85013	ucsc.edu	37	4	4239589	4239589	+	Missense_Mutation	SNP	C	C	T	rs2433883	by2hit2allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	TMEM128,NS,carcinoma,+2,1	TMEM128	NM_032927	exon4	c.G400A	p.V134I	ACATGACAACCCC	.	91	10	96	2	.	12
ADIRF	119385	ucsc.edu	37	10	88730012	88730012	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	NM_006829	exon2	c.G117A	p.G39G	GGCGGGGCAGAAA	.	29	4	25	0	.	.
GPR133	283383	ucsc.edu	37	12	131456080	131456080	+	Missense_Mutation	SNP	T	T	G	rs201546462		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	GPR133	NM_198827	exon4	c.T265G	p.Y89D	GGCAGGTACAACA	.	52	17	61	16	.	136
ZNF276	92822	ucsc.edu	37	16	89805162	89805162	+	Nonstop_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	T					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ZNF276	.	.	.	.	TAGGCCTCAGACC	.	31	7	18	1	.	70
MYADM	91663	ucsc.edu	37	19	54376839	54376839	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	MYADM	NM_001020818	exon2	c.G56T	p.G19V	CTTCGGGCCTGGG	.	36	4	27	0	.	39
PI4KA	5297	ucsc.edu;bcgsc.ca	37	22	21150447	21150447	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PI4KA	NM_058004	exon18	c.G2264T	p.G755V	GCAGGGCCCTTCT	.	24	4	21	0	.	313
PER3	8863	bcgsc.ca	37	1	7890026	7890026	+	Missense_Mutation	SNP	A	G	G	rs199947375	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	PER3,NS,carcinoma,0,4	PER3	NM_016831	exon18	c.A2992G	p.K998E	CCCATGAAGAATC	.	25	6	48	0	.	95
PRAMEF14	729528	bcgsc.ca	37	1	13669138	13669138	+	Silent	SNP	A	G	G	rs55990133	bycluster	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PRAMEF14	NM_001099854	exon4	c.T1048C	p.L350L	GGCACAACAGGTC	.	13	4	70	3	A|0.500;G|0.500	9
.	0	bcgsc.ca	37	1	228637197	228637197	+	RNA	SNP	C	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GACATGCGGATCT	.	86	10	71	0	.	.
.	0	bcgsc.ca	37	2	91800780	91800780	+	RNA	SNP	T	C	C	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	ACTCTCTGAGGAC	.	282	25	192	0	.	.
.	1817	bcgsc.ca	37	2	91873835	91873835	+	RNA	SNP	A	G	G	rs9326662	bycluster;by2hit2allele	TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	CACGGCATTCCCC	.	88	39	68	17	.	.
.	440992	bcgsc.ca	37	3	186618070	186618070	+	RNA	SNP	C	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	CCGCAGCGTAAAA	.	39	27	65	0	.	.
MUC4	4585	bcgsc.ca	37	3	195509127	195509127	+	Silent	SNP	A	G	G	rs200879287		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4	NM_018406	exon2	c.T9324C	p.T3108T	AGGGCTAGTGACA	.	67	24	84	16	A|0.998;G|0.002	1505
BBS12	166379	bcgsc.ca	37	4	123663872	123663872	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	BBS12	NM_001178007	exon3	c.G825T	p.L275F	AGGCTTGAGTCAT	.	22	3	30	0	.	63
SPRY1	10252	bcgsc.ca	37	4	124322966	124322966	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SPRY1	NM_001258039	exon2	c.C220A	p.H74N	GAAAAGCATGAAA	.	18	3	32	0	.	28
SETD7	80854	bcgsc.ca	37	4	140454482	140454482	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	SETD7,colon,carcinoma,0,1	SETD7	NM_030648	exon3	c.G209A	p.G70D	CCCTGGCCCTGCA	.	63	4	74	0	.	35
FRG1	2483	bcgsc.ca	37	4	190876283	190876283	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	FRG1	NM_004477	exon5	c.C409A	p.Q137K	AGAGAACAATGGG	.	270	10	411	6	.	76
ATG10	83734	bcgsc.ca	37	5	81549163	81549163	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ATG10	NM_001131028	exon8	c.C582A	p.S194R	GCTGAGCATTGTA	.	52	4	83	0	.	23
GPR98	84059	bcgsc.ca	37	5	89969943	89969943	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	GPR98	NM_032119	exon23	c.G5002T	p.A1668S	GTTTCTGCAATTC	.	32	3	74	0	.	605
SECISBP2	79048	bcgsc.ca	37	9	91943787	91943787	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SECISBP2	NM_024077	exon5	c.G787T	p.A263S	CCAGCTGCAGTGT	.	19	3	42	0	.	64
SLC22A9	114571	bcgsc.ca	37	11	63149670	63149670	+	Missense_Mutation	SNP	C	A	A	rs201804022		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	SLC22A9	NM_080866	exon6	c.C994A	p.Q332K	GCAGCACAAAAAA	.	94	11	88	4	.	77
.	0	bcgsc.ca	37	14	19114464	19114464	+	RNA	SNP	T	C	C	rs71203526		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	GGCCTGTGCCAAT	.	142	17	233	6	T|0.500;C|0.500	.
LOC283922	0	bcgsc.ca	37	16	74372609	74372609	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	AAAAAGGAGCAAA	.	90	10	98	2	.	.
DHRS7C	201140	bcgsc.ca	37	17	9684863	9684863	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	DHRS7C	NM_001220493	exon2	c.G203T	p.G68V	TTCTTTCCACACA	.	54	4	42	0	.	34
ZNF254	9534	bcgsc.ca	37	19	24310210	24310210	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ZNF254	NM_203282	exon4	c.G1408T	p.A470S	GGCAAGGCATTTA	.	65	4	71	0	.	88
ICOSLG	23308	bcgsc.ca	37	21	45656893	45656893	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	ICOSLG	NM_015259	exon3	c.C263A	p.P88Q	CCGGCCGGTGACA	.	35	4	38	0	.	20
.	347363	bcgsc.ca	37	X	78579158	78579158	+	RNA	SNP	G	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	ATGGGAGGTGCAT	.	27	3	34	0	.	.
PRPS1	5631	bcgsc.ca	37	X	106888557	106888557	+	Silent	SNP	C	T	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	PRPS1	NM_002764	exon5	c.C681T	p.G227G	TTGTGGCACAATC	.	51	4	71	0	.	33
FLG	2312	hgsc.bcm.edu	37	1	152279697	152279698	+	Missense_Mutation	DNP	CT	CT	TG	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	CT	CT	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	FLG,caecum,carcinoma,0,1	FLG	NM_002016	exon3	c.A7664C	p.E2555A	GGCCCCTCTGATT	.	104	6	71	1	.	0
.	0	broad.mit.edu	37	2	38710046	38710047	+	RNA	DNP	TA	TA	AT	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	TA	TA						Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	.	.	.	.	.	.	AATAATAAATAAA	.	55	11	59	3	.	.
MAP3K14	9020	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	17	43351847	43351847	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y2-01A-11D-A417-09	TCGA-ZH-A8Y2-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	Phase_I	WXS	none	.	.	Illumina HiSeq	9443f09f-550c-4111-8a6d-6a74f267b0dc	581c6971-13b1-4bda-9ea8-c3dc3280aacc	MAP3K14,NS,carcinoma,0,1	MAP3K14	.	p.F467L	.	.	CTCCATGAAGATG	.	89	13	65	0	.	0
