Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
NXPE3	91775	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	101540335	101540335	+	Missense_Mutation	SNP	G	G	T	rs149452985		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_145037	exon8	c.G1217T	p.R406L	AATACCGCTGCCA	.	26	11	27	0	0.000	.
TSC1	7248	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	135786449	135786449	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_000368	exon11	c.T1081G	p.S361A	CAGGAGAAGTTGG	.	38	15	48	0	.	.
VPS26B	112936	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	134113055	134113055	+	Silent	SNP	G	G	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_052875	exon4	c.G588C	p.L196L	CTTCCTGCTGGTG	.	34	9	52	0	.	.
SETD2	29072	hgsc.bcm.edu	37	3	47129614	47129614	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SETD2_ENST00000409792,NS,carcinoma,0,2	SETD2_ENST00000409792	NM_014159	exon10	c.G5266A	p.E1756K	TGAGTTCCAGACA	.	47	2	44	0	.	0
KCNN3	3782	hgsc.bcm.edu	37	1	154842333	154842333	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001204087	exon1	c.G108A	p.Q36Q	CTGTTGCTGCTGC	.	90	4	32	0	.	.
TXNDC16	57544	hgsc.bcm.edu;bcgsc.ca	37	14	52922163	52922163	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020784	exon18	c.C1721A	p.A574E	AGACTTGCAGCAT	.	49	4	38	0	.	.
USP6NL	9712	hgsc.bcm.edu	37	10	11505503	11505503	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001080491	exon14	c.C1475A	p.A492D	GAAGTGGCGTTGC	.	50	4	44	0	.	.
KBTBD12	166348	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	3	127703108	127703108	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_207335	exon5	c.G1859T	p.G620V	AAGAAGGCAATGA	.	36	4	30	0	.	.
LTN1	26046	hgsc.bcm.edu	37	21	30339206	30339206	+	Missense_Mutation	SNP	T	T	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	LTN1,colon,carcinoma,+1,6	LTN1	NM_015565	exon10	c.A1745T	p.N582I	TTACCATTTTTTT	.	45	2	47	1	.	+1
LIM2	3982	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	51890594	51890594	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001161748	exon2	c.G104A	p.G35E	AAGGACCCTGACA	.	23	8	20	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195508450	195508450	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,7	.	NM_018406	exon2	c.C10001T	p.P3334L	GAGGAAGGGCTGG	.	20	2	18	2	.	1505
C3orf17	25871	hgsc.bcm.edu	37	3	112727076	112727076	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_015412	exon8	c.C1177A	p.L393M	TACCCAGAAAAAT	.	63	3	99	0	.	.
PRMT3	10196	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	20448337	20448337	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005788	exon10	c.A919G	p.T307A	ACTATTACACTAA	.	85	32	105	0	.	.
ATP13A3	79572	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	3	194168696	194168696	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_024524	exon12	c.A1193G	p.Y398C	TTGGGATACAATA	.	73	30	141	0	.	.
CENPC1	1060	hgsc.bcm.edu	37	4	68396538	68396538	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001812	exon5	c.G326A	p.R109K	CCTGATCTGTTTG	.	76	4	77	0	.	.
ANKRD12	23253	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	18	9254584	9254584	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_015208	exon9	c.C1319G	p.S440C	AGATTTCTACTTC	.	34	26	141	0	.	.
ADRA2A	150	hgsc.bcm.edu	37	10	112838330	112838330	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ADRA2A,colon,carcinoma,0,1	ADRA2A	NM_000681	exon1	c.C576T	p.G192G	GGGCGGCGGCGGC	.	33	2	34	0	.	0
MIR548N	100302152	hgsc.bcm.edu	37	2	179363925	179363925	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	TTTTTTCCAAAAT	.	59	4	79	0	.	.
C12orf5	57103	hgsc.bcm.edu	37	12	4458991	4458991	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020375	exon4	c.C199T	p.H67Y	ACCATGCATGGAA	.	79	4	58	0	.	.
PINX1	54984	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	10677706	10677706	+	Silent	SNP	G	G	A	rs368778352	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_017884	exon6	c.C468T	p.P156P	TACCTCGGGAGTC	.	65	58	90	0	.	.
UGT2B17	7367	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	69403575	69403575	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001077	exon6	c.C1361T	p.P454L	TTCACCGGTTGAT	.	58	48	59	0	.	.
EP400	57634	hgsc.bcm.edu	37	12	132547144	132547144	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	EP400,NS,carcinoma,0,1	EP400	NM_015409	exon47	c.G8232A	p.Q2744Q	ACAGCAGCAGCAG	.	12	3	34	1	.	0
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	2681	2681	+	RNA	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GAAATTGACCTGC	.	1316	83	1862	0	.	.
DOCK10	55619	hgsc.bcm.edu	37	2	225637968	225637968	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	DOCK10_ENST00000373702,NS,carcinoma,0,2	DOCK10_ENST00000373702	NM_014689	exon53	c.C6110A	p.S2037Y	TTCTTGGACATCT	.	33	2	37	0	.	0
CUBN	8029	hgsc.bcm.edu	37	10	17026203	17026203	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001081	exon30	c.C4426T	p.Q1476X	AGACCTGCATGGG	.	72	4	39	0	.	.
PIP4K2B	8396	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	17	36925956	36925956	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_003559	exon10	c.C1239A	p.N413K	CAGGATGTTGGAC	.	42	4	67	0	.	.
NDUFA9	4704	hgsc.bcm.edu;bcgsc.ca	37	12	4763523	4763523	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005002	exon2	c.G115T	p.A39S	CATCATGCCCTCA	.	72	4	48	0	.	.
LAMA5	3911	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	20	60887332	60887332	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005560	exon69	c.G9401T	p.R3134L	GCCAGGCGAAGGA	.	22	7	15	0	.	.
MAGEL2	54551	hgsc.bcm.edu	37	15	23892486	23892486	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_019066	exon1	c.C404A	p.P135H	GCTCCGGGAGCTG	.	70	34	94	0	.	.
MAPKAPK2	9261	hgsc.bcm.edu	37	1	206858675	206858675	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,2	.	NM_004759	exon1	c.A101C	p.Q34P	CGGCGCAGCCGCC	.	21	2	12	0	.	45
CLIP4	79745	hgsc.bcm.edu	37	2	29404628	29404628	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_024692	exon16	c.G1987T	p.G663X	GCCAAGGGAAAAA	.	20	3	38	0	.	.
MAPKBP1	23005	hgsc.bcm.edu	37	15	42113096	42113096	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	MAPKBP1,colon,carcinoma,0,1	MAPKBP1	NM_001128608	exon24	c.C2566T	p.R856C	AGAGGGCGCTGGG	.	24	2	22	0	.	0
GNPDA1	10007	hgsc.bcm.edu	37	5	141384672	141384672	+	Missense_Mutation	SNP	G	G	C	rs11557798	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005471	exon5	c.C419G	p.P140R	CCATCAGGGCCGA	.	19	9	8	0	.	.
PRDM10	56980	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	11	129784863	129784863	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_020228	exon18	c.C2589A	p.L863L	GTTGGAGAGCTGG	.	19	4	22	0	.	.
USH2A	7399	hgsc.bcm.edu	37	1	216591858	216591858	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_007123	exon3	c.C649T	p.Q217X	TCACCTGCACACT	.	92	4	51	0	.	.
ZNF30	90075	hgsc.bcm.edu	37	19	35434870	35434870	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZNF30,colon,carcinoma,0,1	ZNF30	NM_001099438	exon5	c.C1003T	p.H335Y	ACTCGACATCAGA	.	35	2	41	0	.	0
FGFR1OP	11116	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	167447400	167447400	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_007045	exon12	c.G1066A	p.G356S	AGTATTGGTGAAG	.	33	26	67	0	.	.
ZNF195	7748	hgsc.bcm.edu;bcgsc.ca	37	11	3381489	3381489	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001130520	exon6	c.G749A	p.G250D	GATTTGCCACATT	.	51	4	60	0	.	.
ABCA13	154664	hgsc.bcm.edu	37	7	48318114	48318114	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ABCA13_ENST00000435803,NS,carcinoma,0,2	ABCA13_ENST00000435803	NM_152701	exon18	c.G7323T	p.L2441F	TGCTTTGTATCCT	.	32	2	56	0	.	0
VENTX	27287	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	135053262	135053262	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_014468	exon2	c.C324T	p.G108G	GGAGGGCGTCTTC	.	33	11	26	0	.	.
MAB21L1	4081	hgsc.bcm.edu;ucsc.edu	37	13	36048562	36048562	+	RNA	SNP	T	T	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GCAATATTTGAAA	.	123	56	149	0	.	.
CENPF	1063	hgsc.bcm.edu;bcgsc.ca	37	1	214818019	214818019	+	Silent	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CENPF,right_lower_lobe,carcinoma,0,1	CENPF	NM_016343	exon13	c.C5106A	p.L1702L	GGACCTCAATCTA	.	88	4	41	0	.	0
IFT122	55764	hgsc.bcm.edu	37	3	129218838	129218838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	IFT122,colon,carcinoma,0,3	IFT122	NM_052985	exon20	c.G2455T	p.V819L	GCCGCCGTGGAGA	.	45	3	51	0	.	0
TP53	7157	hgsc.bcm.edu	37	17	7579316	7579316	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	TP53_ENST00000413465,NS,carcinoma,+1,4	TP53_ENST00000413465	NM_000546	exon4	c.G371A	p.C124Y	ACCGTGCAAGTCA	.	47	2	94	0	.	+1
ARHGAP19	84986	hgsc.bcm.edu	37	10	99024582	99024582	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARHGAP19_ENST00000358531,NS,carcinoma,0,1	ARHGAP19_ENST00000358531	NM_032900	exon4	c.403+1G>A	.	GTCTTACTTTTGT	.	50	2	35	0	.	0
DMRTA1	63951	hgsc.bcm.edu	37	9	22451584	22451584	+	Nonsense_Mutation	SNP	G	G	T	rs150162716	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	DMRTA1,arm,malignant_melanoma,0,1	DMRTA1	NM_022160	exon2	c.G1189T	p.G397X	CTTGCTGGAATTG	.	49	3	57	0	.	0
WRAP53	55135	hgsc.bcm.edu;broad.mit.edu	37	17	7606344	7606344	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	WRAP53,NS,carcinoma,0,1	WRAP53	NM_001143991	exon10	c.C1302T	p.S434S	CACGAGCGGGGCT	.	23	3	16	0	.	0
ARID2	196528	hgsc.bcm.edu	37	12	46245336	46245336	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARID2,NS,carcinoma,0,1	ARID2	NM_152641	exon15	c.C3430T	p.P1144S	ACTGTGCCCATTT	.	33	2	43	0	.	0
SLC5A12	159963	hgsc.bcm.edu;bcgsc.ca	37	11	26725205	26725205	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_178498	exon6	c.C694A	p.P232T	TGAGAGGATCTAC	.	56	4	60	0	.	.
ND4	0	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	11988	11988	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	ENST00000361381	exon1	c.T1229C	p.M410T	TCTACATATTTAC	.	78	73	25	0	.	.
U2AF1L4	199746	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	36233568	36233568	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_144987	exon6	c.G540A	p.Q180Q	GAGGTCCTGCCAG	.	41	16	31	0	.	.
ITGAV	3685	hgsc.bcm.edu	37	2	187511445	187511445	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ITGAV,caecum,carcinoma,0,1	ITGAV	NM_002210	exon13	c.G1192T	p.D398Y	GGTGAAGATAAAA	.	26	2	25	0	.	0
ACTN2	88	hgsc.bcm.edu	37	1	236882229	236882229	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001103	exon3	c.C277T	p.R93W	AAAATGCGGTTCC	.	87	4	51	0	.	.
FOXF1	2294	hgsc.bcm.edu	37	16	86544554	86544554	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	FOXF1_ENST00000262426,NS,carcinoma,0,2	FOXF1_ENST00000262426	NM_001451	exon1	c.G379A	p.A127T	GACCCGGCCAGCG	.	49	3	40	0	.	0
FREM2	341640	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	13	39454561	39454561	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_207361	exon24	c.C9147T	p.S3049S	CAAGAGCCGGAAG	.	29	4	41	0	.	.
SESTD1	91404	hgsc.bcm.edu;bcgsc.ca	37	2	180016103	180016103	+	Missense_Mutation	SNP	C	C	T	rs377062896		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_178123	exon6	c.G385A	p.A129T	TGTTGGCGGACAC	.	59	5	108	0	.	.
PRDM1	639	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	6	106553700	106553700	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001198	exon5	c.C1665A	p.N555K	AAGAAACATGACC	.	22	17	25	0	.	.
CLRN1	7401	hgsc.bcm.edu	37	3	150690293	150690293	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CLRN1,NS,carcinoma,0,1	CLRN1	NM_001256819	exon1	c.G203A	p.G68E	CCCTCTCCGTGGA	.	28	2	24	0	.	0
DKKL1	27120	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	49878126	49878126	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_014419	exon5	c.C570T	p.L190L	CTGGCTCAGCGAG	.	29	11	49	0	.	.
SALL1	6299	hgsc.bcm.edu	37	16	51173912	51173912	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SALL1,NS,carcinoma,0,2	SALL1	NM_002968	exon2	c.C2221A	p.R741R	AAGCCCGGCCACA	.	41	2	40	0	.	0
PASK	23178	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	242051786	242051786	+	Silent	SNP	G	G	A	rs200314136	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001252119	exon15	c.C3423T	p.I1141I	GATCACGATGTTC	.	22	8	22	0	0.001	.
PKD1	5310	hgsc.bcm.edu	37	16	2160404	2160404	+	Silent	SNP	G	G	A	rs376144237		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_000296	exon15	c.C4764T	p.C1588C	GGGCGTGCAGCGG	.	52	4	61	0	.	.
RNR2	6053	hgsc.bcm.edu;broad.mit.edu	37	MT	1964	1964	+	RNA	SNP	T	T	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GCAAAATAGTGGG	.	89	25	14	0	.	.
GIGYF2	26058	hgsc.bcm.edu	37	2	233708929	233708929	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	GIGYF2_ENST00000409451,NS,carcinoma,0,2	GIGYF2_ENST00000409451	NM_001103147	exon26	c.G3126A	p.Q1042Q	GCAGCAGCAACAC	.	26	2	26	0	.	0
MLL	4297	hgsc.bcm.edu	37	11	118344932	118344932	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001197104	exon3	c.G3058T	p.D1020Y	ATGACTGACAAGA	.	35	3	29	0	.	.
CACNA1B	774	hgsc.bcm.edu	37	9	140773613	140773613	+	Splice_Site	SNP	T	T	A	rs201604190		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CACNA1B,colon,carcinoma,0,8	CACNA1B	NM_001243812	exon2	c.390+2T>A	.	GGCTGGTGAGTGC	.	27	4	39	2	.	0
OR6P1	128366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	158533186	158533186	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001160325	exon1	c.A209G	p.E70G	CATAGCTCCAGGA	.	138	77	54	0	.	.
MANBA	4126	hgsc.bcm.edu	37	4	103560932	103560932	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	MANBA,colon,carcinoma,0,1	MANBA	NM_005908	exon14	c.C1952T	p.T651M	CCCATCGTGTGCC	.	33	2	29	0	.	0
TMEM44	93109	hgsc.bcm.edu	37	3	194337847	194337847	+	Missense_Mutation	SNP	C	C	T	rs369611318		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001166305	exon7	c.G905A	p.R302H	GCCGCACGGCCGA	.	75	4	89	0	.	.
C18orf25	147339	hgsc.bcm.edu	37	18	43833705	43833705	+	Missense_Mutation	SNP	G	G	C	rs370787556		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.,1	.	NM_145055	exon4	c.G941C	p.G314A	CATCTGGCAATGC	.	101	5	90	1	.	27
COX1	5742	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	6510	6510	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	ENST00000361624	exon1	c.G607A	p.A203T	GTCCTAGCTGCTG	.	82	77	22	0	.	.
PABPC3	5042	hgsc.bcm.edu	37	13	25671456	25671456	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PABPC3,colon,carcinoma,-1,1	PABPC3	NM_030979	exon1	c.C1120T	p.R374C	GAAGAGCGCCAGG	.	39	2	74	0	.	-1
NUP210P1	255330	hgsc.bcm.edu	37	3	126385744	126385744	+	RNA	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	AACCAGCACTGTG	.	30	10	24	0	.	.
ZNF85	7639	hgsc.bcm.edu	37	19	21132556	21132556	+	Silent	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZNF85,NS,carcinoma,0,1	ZNF85	NM_001256171	exon5	c.C1326A	p.T442T	TTCAACCCTTACT	.	39	3	61	0	.	0
PTPRS	5802	hgsc.bcm.edu	37	19	5218452	5218452	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PTPRS,colon,carcinoma,+1,1	PTPRS	NM_002850	exon25	c.C4027A	p.R1343S	TAATGCGTCTCAT	.	32	2	39	1	.	+1
CACNA1G	8913	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	48684279	48684279	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001256360	exon24	c.G4441A	p.V1481I	CTGTTCGTTTTGG	.	33	9	28	0	.	.
PDE9A	5152	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	21	44189140	44189140	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_002606	exon17	c.G1465A	p.D489N	CAGAGCGACCGTG	.	28	15	40	0	.	.
DPY19L3	147991	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	32930122	32930122	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001172774	exon7	c.A701G	p.N234S	GACCAAACTTACA	.	80	11	118	0	.	.
PGGT1B	5229	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	5	114566719	114566719	+	Splice_Site	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_005023	exon7	c.613-1G>A	.	ATAGGACTGAAAA	.	26	4	36	0	.	.
ROCK1P1	727758	hgsc.bcm.edu	37	18	109926	109926	+	RNA	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	ACTGATCACCCAG	.	83	7	17	0	.	.
PLA2G4F	255189	hgsc.bcm.edu	37	15	42446614	42446614	+	Missense_Mutation	SNP	G	G	T	rs142310375	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	PLA2G4F,right_lower_lobe,carcinoma,0,1	PLA2G4F	NM_213600	exon3	c.C227A	p.A76E	GGGGACGCCGTGG	.	26	2	31	0	.	0
ELOVL7	79993	hgsc.bcm.edu	37	5	60060157	60060157	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ELOVL7,NS,carcinoma,0,1	ELOVL7	NM_001104558	exon6	c.C396A	p.I132I	AAAAAAGATCTGA	.	44	2	73	0	.	0
ANO7	50636	hgsc.bcm.edu;ucsc.edu	37	2	242135132	242135132	+	Missense_Mutation	SNP	G	G	A	rs149691575	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_001001891	exon4	c.G343A	p.V115I	GTCCTCGTTTGGG	.	20	11	11	0	0.000	.
ZBTB7A	51341	hgsc.bcm.edu	37	19	4053996	4053996	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ZBTB7A,colon,carcinoma,0,1	ZBTB7A	NM_015898	exon2	c.G1235A	p.C412Y	ATGTTGCACTCGT	.	34	2	36	0	.	0
SMAP1	60682	hgsc.bcm.edu	37	6	71567931	71567931	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	SMAP1_ENST00000370455,NS,carcinoma,0,2	SMAP1_ENST00000370455	NM_001044305	exon10	c.A1268G	p.Q423R	TCTCACAGGTAGG	.	50	2	63	0	.	0
AHNAK2	113146	hgsc.bcm.edu	37	14	105415064	105415064	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	NM_138420	exon7	c.C6724T	p.P2242S	AACTGGGCATCTG	.	51	4	79	0	.	.
ARFGEF2	10564	hgsc.bcm.edu	37	20	47569405	47569405	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	ARFGEF2,NS,carcinoma,-1,1	ARFGEF2	NM_006420	exon5	c.G587A	p.R196H	TCACCCGCATGGA	.	62	3	25	0	.	-1
RHBDL3	162494	hgsc.bcm.edu	37	17	30621346	30621346	+	Missense_Mutation	SNP	G	G	T	rs138890553		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	RHBDL3,NS,carcinoma,0,1	RHBDL3	NM_138328	exon5	c.G553T	p.G185C	TCACTAGGTCAAT	.	50	2	55	0	0.000	0
CR1	1378	broad.mit.edu	37	1	207787753	207787753	+	Nonsense_Mutation	SNP	C	C	T	rs55749440	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	CR1_ENST00000367049,NS,carcinoma,0,15	CR1	NM_000651	exon40	c.C6580T	p.R2194X	AGGTTCCGATTAA	.	223	8	153	1	.	354
LRRC71	149499	broad.mit.edu	37	1	156893876	156893876	+	Frame_Shift_Del	DEL	A	A	-	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	LRRC71	NM_144702	exon2	c.296delA	p.E99fs	TGTCGGAAAAGGC	.	187	6	47	0	.	33
ART5	116969	broad.mit.edu;ucsc.edu	37	11	3661209	3661209	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ART5	NM_001079536	exon3	c.C450A	p.C150X	CCTGCTGCAGCCC	.	52	9	82	1	.	38
ADAM21P1	0	broad.mit.edu	37	14	70714144	70714144	+	RNA	SNP	A	A	G	rs3751522		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	CTTCTTAACCCTC	.	21	5	47	1	.	.
WDR25	79446	broad.mit.edu;bcgsc.ca	37	14	100847912	100847916	+	Frame_Shift_Del	DEL	GTCTG	GTCTG	-	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	WDR25	NM_001161476	exon2	c.651_655del	p.217_219del	GGGAGTGTCTGAG	.	18	8	66	0	.	37
WDR25	79446	broad.mit.edu;bcgsc.ca	37	14	100847918	100847924	+	Frame_Shift_Del	DEL	GTTTATT	GTTTATT	-	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	WDR25,colon,carcinoma,+2,2	WDR25	NM_001161476	exon2	c.657_663del	p.219_221del	GTCTGAGTTTATT	.	15	9	65	0	.	37
KIAA1024	23251	broad.mit.edu	37	15	79749365	79749365	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	KIAA1024	NM_015206	exon2	c.G876T	p.K292N	TCGAAAGGAACCC	.	32	3	32	0	.	146
C16orf90	0	broad.mit.edu	37	16	3546141	3546141	+	RNA	DEL	A	A	-	rs200618809		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	C16orf90	.	.	.	.	CGTCTCAAAAAAA	.	7	1	7	0	.	16
.	0	broad.mit.edu	37	16	32118199	32118200	+	RNA	DEL	AT	AT	-	rs144117991	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	AATAACATAAACC	.	10	3	4	0	.	.
TTC25	83538	broad.mit.edu	37	17	40101598	40101598	+	RNA	DEL	A	A	-	rs35481109	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	TTC25	.	.	.	.	CTCTACAAAAAAA	.	6	1	7	0	-|1.000;|0.000	37
LPIN2	9663	broad.mit.edu	37	18	2937759	2937759	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	LPIN2	NM_014646	exon7	c.G1099T	p.A367S	AGGCTGCGTTGGG	.	22	3	49	0	.	75
FFAR3	2865	broad.mit.edu;bcgsc.ca	37	19	35850647	35850647	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	FFAR3	NM_005304	exon2	c.C855T	p.A285A	CCAAGCCGACTTT	.	91	28	113	1	.	40
NLRP8	126205	broad.mit.edu	37	19	56467321	56467321	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	NLRP8	NM_176811	exon3	c.G1897T	p.V633F	AAAGTTGTCTTGA	.	57	3	57	1	.	225
ZNF649	65251	broad.mit.edu	37	19	52395140	52395140	+	Missense_Mutation	SNP	T	T	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ZNF649	NM_023074	exon5	c.A249C	p.K83N	ATCAGCTTTCTCA	.	34	3	35	0	.	72
BAGE2	85319	broad.mit.edu	37	21	11048049	11048049	+	RNA	DEL	A	A	-	rs147865622		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GTCACTAAACAAC	.	7	3	4	0	.	.
FLJ22763	0	broad.mit.edu	37	3	108868962	108868962	+	RNA	DEL	A	A	-	rs57306274	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	AGAACTAAAAAAA	.	15	5	5	0	.	.
VPRBP	9730	broad.mit.edu;bcgsc.ca	37	3	51449832	51449832	+	Splice_Site	SNP	C	C	G	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	VPRBP	NM_001171904	exon22	c.4050+1G>C	.	CACTGACCTGGTC	.	14	10	24	0	.	107
.	0	broad.mit.edu	37	4	190805401	190805401	+	RNA	DEL	T	T	-	rs60889582	bycluster	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	TAATAATTTTAGA	.	8	2	4	0	T|0.500;-|0.500	.
CENPE	1062	broad.mit.edu	37	4	104032141	104032141	+	Missense_Mutation	SNP	G	G	T	rs373836132	alternate_allele	TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	CENPE	NM_001813	exon47	c.C7568A	p.P2523H	TTTGAAGGCTGAG	.	45	3	43	0	.	253
MARCH6	10299	broad.mit.edu	37	5	10415711	10415711	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	MARCH6	NM_005885	exon21	c.C2078T	p.T693M	CTGTGACGGTGAT	.	37	3	55	0	.	89
LINC00340	0	broad.mit.edu	37	6	22086023	22086023	+	RNA	DEL	A	A	-	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GCATGCAAAACCT	.	5	1	5	0	.	.
ADCK5	203054	broad.mit.edu	37	8	145617535	145617549	+	Splice_Site	DEL	GGGGGTGCAAGGTGA	GGGGGTGCAAGGTGA	-	rs11270020		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ADCK5	NM_174922	exon12	c.1257_1267del	p.419_423del	CGCACTGGGGGTG	.	7	2	4	0	.	36
LRRC2	79442	ucsc.edu;bcgsc.ca	37	3	46563075	46563075	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	LRRC2,NS,carcinoma,+1,3	LRRC2	NM_024512	exon8	c.C1003A	p.R335R	GATCCCGTTCACT	.	38	4	40	0	.	37
SLC3A2	6520	ucsc.edu;bcgsc.ca	37	11	62648550	62648550	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SLC3A2	NM_001012662	exon4	c.C361T	p.P121S	TTAGAGCCCGAGA	.	40	4	47	0	.	55
ANO1	55107	ucsc.edu;bcgsc.ca	37	11	69950201	69950201	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	A	A					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	ANO1	NM_018043	exon4	c.A637T	p.R213W	GAGCACAGGCCCC	.	15	4	27	0	.	156
SLC7A10	56301	ucsc.edu	37	19	33701909	33701909	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	C					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SLC7A10	.	.	.	.	GCCCAGCAGCCCC	.	35	4	23	0	.	43
RPAP2	79871	bcgsc.ca	37	1	92789386	92789386	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	RPAP2	NM_024813	exon8	c.C909A	p.S303R	AAATAGCACTTTG	.	20	3	53	0	.	48
.	28891	bcgsc.ca	37	2	90248911	90248911	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	CAGTCAGGACACA	.	64	27	84	0	.	.
MUC12	10071	bcgsc.ca	37	7	100643832	100643832	+	Missense_Mutation	SNP	C	G	G	rs57050353		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	MUC12	NM_001164462	exon2	c.C9988G	p.H3330D	ACCTACCACAGCA	.	537	28	550	33	.	140
MUC12	10071	bcgsc.ca	37	7	100643876	100643876	+	Silent	SNP	C	T	T	rs55930823		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	MUC12	NM_001164462	exon2	c.C10032T	p.S3344S	TGAAAGCGACACA	.	502	26	485	27	.	140
.	0	bcgsc.ca	37	8	55667427	55667427	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	TGTCTCGGATTCA	.	75	42	72	2	.	.
.	79515	bcgsc.ca	37	11	123880424	123880424	+	RNA	SNP	G	T	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	CTGGACGCCCCAC	.	27	11	40	0	.	.
.	0	bcgsc.ca	37	12	6588416	6588416	+	RNA	SNP	T	C	C	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	TGGATGTCTAAGA	.	32	9	21	0	.	.
SOAT2	8435	bcgsc.ca	37	12	53509269	53509269	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	SOAT2	NM_003578	exon6	c.C539T	p.A180V	TGTTGGCGCCGTA	.	15	3	18	0	.	44
.	144	bcgsc.ca	37	13	111591134	111591134	+	RNA	SNP	G	T	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	GATGTGGAAAGTA	.	28	13	18	0	.	.
.	100129631	bcgsc.ca	37	16	32859392	32859392	+	RNA	SNP	C	T	T	novel		TCGA-ZH-A8Y5-01A-11D-A417-09	TCGA-ZH-A8Y5-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	85df6bba-88a3-4a2a-9233-157b59947c23	14be0260-55ec-4801-b29f-15ddeb9b79bb	.	.	.	.	.	.	CATCTCCAAGGAC	.	122	22	137	0	.	.
