Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	COSMIC_Codon	COSMIC_Gene	Transcript_Id	Exon	ChromChange	AAChange	Genome_Plus_Minus_10_Bp	Drug_Target	TTotCov_SOL	TVarCov_SOL	NTotCov_SOL	NVarCov_SOL	dbSNPPopFreq	COSMIC_Gene_Freq
TP53BP1	7158	hgsc.bcm.edu	37	15	43766909	43766910	+	Frame_Shift_Ins	INS	-	-	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	-	-	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001141979	exon10	c.1142_1143insA	p.I381fs	GGAACGATAAAAG	.	41	10	30	0	.	.
PXMP4	11264	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	20	32298495	32298502	+	Frame_Shift_Del	DEL	ACCGTGCC	ACCGTGCC	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	ACCGTGCC	ACCGTGCC	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_007238	exon3	c.235_242del	p.79_81del	ACACAAACCGTGC	.	55	12	45	0	.	.
ARID1B	57492	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	6	157517340	157517340	+	Frame_Shift_Del	DEL	C	C	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_020732	exon16	c.3903delG	p.M1301fs	CAGATGCCCAACA	.	32	11	41	0	.	.
RBM27	54439	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	145610369	145610369	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018989	exon6	c.C739G	p.H247D	CCTGCTCACCACT	.	29	9	40	0	.	.
EP400	57634	hgsc.bcm.edu;bcgsc.ca	37	12	132475225	132475225	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015409	exon9	c.G2595T	p.K865N	AAGGAAGAAGGCC	.	82	4	122	0	.	.
STX3	6809	hgsc.bcm.edu	37	11	59560628	59560628	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004177	exon7	c.G523A	p.A175T	AACCCGGCCATCT	.	45	4	37	0	.	.
CLDN7	1366	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	7164180	7164180	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001185023	exon2	c.C348T	p.A116A	TATACGGGCCTTC	.	44	14	62	0	.	.
OR2D3	120775	hgsc.bcm.edu	37	11	6942250	6942250	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR2D3,right_upper_lobe,carcinoma,0,1	OR2D3	NM_001004684	exon1	c.G18T	p.L6F	TTTCTTGTGCCAA	.	44	2	67	0	.	0
CEP68	23177	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	65305018	65305018	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015147	exon5	c.T2024C	p.I675T	AAGATATAGATGA	.	83	22	83	0	.	.
INF2	64423	hgsc.bcm.edu	37	14	105180791	105180791	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_022489	exon21	c.G3292T	p.E1098X	CCCTTGGAGGGGG	.	54	4	77	0	.	.
EMC2	9694	hgsc.bcm.edu	37	8	109482343	109482343	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TTC35,NS,carcinoma,0,1	TTC35	NM_014673	exon7	c.G502T	p.E168X	ATCAATGAACATG	.	33	2	31	0	.	0
KIAA1731	85459	hgsc.bcm.edu;bcgsc.ca	37	11	93417166	93417166	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_033395	exon9	c.A986G	p.E329G	AACCAGAGCCCTT	.	56	4	50	0	.	.
RAD54L2	23132	hgsc.bcm.edu	37	3	51624525	51624525	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	RAD54L2,NS,carcinoma,0,1	RAD54L2	NM_015106	exon2	c.A89T	p.E30V	AGGAGGAGGTGGC	.	43	3	59	0	.	0
KIAA1841	84542	hgsc.bcm.edu	37	2	61319611	61319611	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	KIAA1841_ENST00000402291,NS,carcinoma,0,4	KIAA1841_ENST00000402291	NM_032506	exon11	c.G1101A	p.W367X	GACATGGGATGTT	.	40	2	63	0	.	0
IFI16	3428	hgsc.bcm.edu	37	1	158985757	158985757	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	IFI16,bladder,carcinoma,0,1	IFI16	NM_001206567	exon3	c.G361T	p.E121X	GGAGCAGAGGCAA	.	36	2	23	0	.	0
TACR2	6865	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	10	71174776	71174776	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001057	exon2	c.C512A	p.T171N	GTGACGGTGGAGT	.	32	4	33	0	.	.
ZNF638	27332	hgsc.bcm.edu	37	2	71650945	71650945	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF638,NS,carcinoma,0,1	ZNF638	NM_014497	exon22	c.C4301A	p.A1434D	TTTCAGCCAAGGA	.	32	2	23	0	.	0
TENM2	57451	hgsc.bcm.edu	37	5	167675132	167675132	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ODZ2_ENST00000519204,NS,carcinoma,0,3	ODZ2_ENST00000519204	NM_001122679	exon27	c.G7161T	p.E2387D	TGGGGAGATTTAT	.	42	2	49	0	.	0
FAM73A	374986	hgsc.bcm.edu	37	1	78272787	78272787	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FAM73A,NS,carcinoma,0,1	FAM73A	NM_198549	exon5	c.637+1G>T	.	TAATGGGTAGGAA	.	50	2	46	1	.	0
PROS1	5627	hgsc.bcm.edu	37	3	93605180	93605180	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PROS1,NS,carcinoma,0,1	PROS1	NM_000313	exon11	c.G1323A	p.P441P	CATTACCGGTTTA	.	35	2	71	0	.	0
NAMPT	10135	hgsc.bcm.edu;bcgsc.ca	37	7	105894878	105894878	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_005746	exon9	c.C1162A	p.Q388K	ACTTCTGTAGCAA	.	66	4	60	0	.	.
MUC5B	727897	hgsc.bcm.edu	37	11	1258387	1258387	+	Missense_Mutation	SNP	G	G	A	rs202160055		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MUC5B,NS,carcinoma,+1,2	MUC5B	NM_002458	exon25	c.G3290A	p.R1097H	CCTGCCGCTCCCA	.	42	6	39	1	.	+1
PLCH2	9651	hgsc.bcm.edu	37	1	2430086	2430086	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,6	.	NM_014638	exon17	c.G2349C	p.E783D	TGGGGAGGTGGGG	.	5	2	7	1	.	131
ZNF521	25925	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	18	22669523	22669523	+	Nonsense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015461	exon7	c.T3812A	p.L1271X	TGCTGCAACTTGT	.	49	9	58	0	.	.
ZNF709	163051	hgsc.bcm.edu;bcgsc.ca	37	19	12575678	12575678	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_152601	exon4	c.G1058A	p.R353K	ATATGTCTTCGAT	.	63	4	70	0	.	.
HMCN1	83872	hgsc.bcm.edu;bcgsc.ca	37	1	186158652	186158652	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_031935	exon107	c.T16550C	p.L5517P	TCTGCCTCAAGAA	.	83	4	70	0	.	.
ANKRD30B	374860	hgsc.bcm.edu	37	18	14757844	14757844	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ANKRD30B_ENST00000358984,NS,carcinoma,0,2	ANKRD30B_ENST00000358984	NM_001145029	exon5	c.C648T	p.G216G	TGAAGGCTCATCA	.	57	2	75	0	.	0
ESRP1	54845	hgsc.bcm.edu	37	8	95653675	95653675	+	Missense_Mutation	SNP	G	G	T	rs371931710	alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ESRP1_ENST00000433389,NS,carcinoma,0,2	ESRP1_ENST00000433389	NM_001122827	exon1	c.G129T	p.K43N	CAACAAGAAGGTA	.	44	2	38	0	.	0
CWF19L2	143884	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	107325251	107325251	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_152434	exon3	c.A264G	p.K88K	CTTTGCTTTTTTT	.	43	11	56	0	.	.
MLLT10P1	140678	hgsc.bcm.edu	37	20	29638070	29638070	+	RNA	SNP	T	T	G	rs2313018		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TAACATTTTGATT	.	55	8	48	0	.	.
ZNF682	91120	hgsc.bcm.edu	37	19	20117004	20117004	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF682,NS,carcinoma,0,1	ZNF682	NM_033196	exon4	c.G1307T	p.R436L	GAGCACCGATTAA	.	54	3	60	0	.	0
ZFR	51663	hgsc.bcm.edu	37	5	32407029	32407029	+	Silent	SNP	A	A	T	rs139769264		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZFR,NS,carcinoma,0,2	ZFR	NM_016107	exon6	c.T882A	p.A294A	AGCAGCAGCTGCT	.	28	2	22	0	0.000	0
ZNF254	9534	hgsc.bcm.edu	37	19	24289441	24289441	+	Silent	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_203282	exon3	c.C249A	p.P83P	TGAACCCCCAGGT	.	90	3	88	0	.	.
ZNF792	126375	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	35450228	35450228	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_175872	exon4	c.G531A	p.R177R	CTGTTTCCGGGGA	.	59	11	53	0	.	.
RPF1	80135	hgsc.bcm.edu	37	1	84948633	84948633	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_025065	exon3	c.C321T	p.N107N	TGACAACCAGCGA	.	95	4	102	0	.	.
PRKG1	5592	hgsc.bcm.edu	37	10	53893621	53893621	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PRKG1,rectum,carcinoma,0,1	PRKG1	NM_006258	exon8	c.C957T	p.N319N	AGCAAACGTAATT	.	34	2	43	0	.	0
PHLPP1	23239	hgsc.bcm.edu	37	18	60612431	60612431	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PHLPP,NS,carcinoma,0,1	PHLPP	NM_194449	exon12	c.G3251A	p.R1084H	GCAGGCGCATGCA	.	47	2	34	0	.	0
PIK3C2G	5288	hgsc.bcm.edu	37	12	18524178	18524178	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,2	.	NM_004570	exon12	c.G1690T	p.G564W	CTGTTTGGGATTG	.	40	2	55	0	.	315
CAMK2B	816	hgsc.bcm.edu;bcgsc.ca	37	7	44302636	44302636	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_172081	exon3	c.G188T	p.R63L	CAGATCCGAGCCT	.	55	5	80	0	.	.
POPDC3	64208	hgsc.bcm.edu	37	6	105609709	105609709	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	POPDC3,NS,NS,0,2	POPDC3	NM_022361	exon2	c.G76A	p.E26K	CTCCTTCGGCCTC	.	36	2	39	0	.	0
NGEF	25791	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	233756101	233756101	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_019850	exon8	c.C1239T	p.F413F	CCTCTGGAAAGGC	.	34	8	33	0	.	.
ITIH5	80760	hgsc.bcm.edu	37	10	7608296	7608296	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ITIH5,NS,adenocarcinoma,+1,1	ITIH5	NM_030569	exon13	c.C2224T	p.R742C	TAGTGCGCAAGTA	.	36	2	36	0	.	+1
DUSP12	11266	hgsc.bcm.edu;bcgsc.ca	37	1	161726605	161726605	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_007240	exon6	c.G891T	p.L297F	CAAGTTGGGTTCC	.	62	4	49	0	.	.
TLL1	7092	hgsc.bcm.edu;bcgsc.ca	37	4	166981259	166981259	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012464	exon15	c.G1926T	p.K642N	TAATAAGAACTGT	.	51	4	66	0	.	.
CD22	933	hgsc.bcm.edu	37	19	35832642	35832642	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CD22,NS,carcinoma,0,1	CD22	NM_001185100	exon9	c.G1809T	p.G603G	CCCGGGGGACCAA	.	49	2	48	0	.	0
ANKRD17	26057	hgsc.bcm.edu	37	4	74019647	74019647	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ANKRD17,brain,primitive_neuroectodermal_tumour-medulloblastoma,0,1	ANKRD17	NM_198889	exon6	c.C1184A	p.T395K	GAATGCGTATTAA	.	35	2	70	0	.	0
TRIM5	85363	hgsc.bcm.edu	37	11	5686556	5686556	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRIM5_ENST00000380034,NS,carcinoma,0,2	TRIM5_ENST00000380034	NM_033034	exon8	c.C965A	p.S322Y	TTCGGAGAGCTCA	.	35	2	47	0	.	0
GABRA4	2557	hgsc.bcm.edu	37	4	46930465	46930465	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000809	exon9	c.C1442A	p.S481X	AGTCTTGATCCAA	.	53	4	83	0	.	.
ALS2CR11	151254	hgsc.bcm.edu	37	2	202359173	202359173	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ALS2CR11_ENST00000439140,NS,carcinoma,0,1	ALS2CR11_ENST00000439140	NM_001168221	exon15	c.C1891A	p.L631I	TTGGTAGATTTTC	.	47	3	76	0	.	0
GJA5	2702	hgsc.bcm.edu	37	1	147231066	147231066	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	GJA5,NS,carcinoma,0,1	GJA5	NM_005266	exon2	c.G281T	p.G94V	GCGTGGCCCATGT	.	29	2	29	0	.	0
CAPN14	440854	hgsc.bcm.edu	37	2	31428272	31428272	+	Silent	SNP	C	C	T	rs374924641		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CAPN14,NS,carcinoma,0,1	CAPN14	NM_001145122	exon2	c.G42A	p.A14A	CCTTGGCGCCAGC	.	38	2	58	0	.	0
BIRC6	57448	hgsc.bcm.edu	37	2	32774511	32774511	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	BIRC6_ENST00000421745,NS,carcinoma,0,2	BIRC6_ENST00000421745	NM_016252	exon65	c.C13107T	p.L4369L	CTGCCTCATCCCA	.	47	2	51	0	.	0
COL6A3	1293	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	2	238268788	238268788	+	Silent	SNP	C	C	T	rs368711215		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	COL6A3,colon,carcinoma,0,1	COL6A3	NM_004369	exon17	c.G6225A	p.P2075P	ACCAGGCGGACCA	.	33	6	35	0	.	0
PRB2	653247	hgsc.bcm.edu	37	12	11546444	11546444	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_006248	exon3	c.C568A	p.Q190K	GGGGCTGGTTGCC	.	122	6	105	1	.	.
ARHGAP44	9912	hgsc.bcm.edu	37	17	12852466	12852466	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ARHGAP44,extremity,malignant_melanoma,0,1	ARHGAP44	NM_014859	exon11	c.C871T	p.R291X	CTCTTCCGAGTAG	.	52	3	41	0	.	0
TDH	157739	hgsc.bcm.edu	37	8	11213601	11213601	+	RNA	SNP	C	C	T	rs75194683	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TCTGCTCTTTTCT	.	76	0	97	0	.	.
POLR2F	5435	hgsc.bcm.edu	37	22	38363154	38363154	+	Silent	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	POLR2F,NS,carcinoma,0,1	POLR2F	NM_021974	exon4	c.G270T	p.L90L	TCCTCTGCTCATT	.	40	2	49	0	.	0
TYR	7299	hgsc.bcm.edu	37	11	89017970	89017970	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000372	exon4	c.G1214A	p.R405H	GGCACCGTCCTCT	.	96	5	93	0	.	.
DSE	29940	hgsc.bcm.edu	37	6	116756770	116756770	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	DSE,NS,carcinoma,0,1	DSE	NM_001080976	exon6	c.C1139T	p.S380L	TGAAATCGGTTCC	.	54	3	39	0	.	0
OR51F2	119694	hgsc.bcm.edu	37	11	4842747	4842747	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR51F2,NS,carcinoma,0,1	OR51F2	NM_001004753	exon1	c.T132C	p.P44P	CATCCCTTTTTGT	.	48	2	55	0	.	0
ADCY10	55811	hgsc.bcm.edu;bcgsc.ca	37	1	167779005	167779005	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018417	exon33	c.G4743T	p.W1581C	TTTTTCCCATGAT	.	74	4	62	0	.	.
TRPM5	29850	hgsc.bcm.edu	37	11	2443523	2443523	+	Missense_Mutation	SNP	G	G	T	rs200361945	bycluster;alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRPM5,bladder,carcinoma,0,1	TRPM5	NM_014555	exon2	c.C146A	p.P49Q	ACAGACGGGGCCA	.	49	3	53	0	.	0
PARD3	56288	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	34671618	34671618	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001184788	exon9	c.T1249G	p.S417A	AGTGAGAGTCTAT	.	41	6	58	0	.	.
ENGASE	64772	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	17	77073889	77073889	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001042573	exon3	c.G359A	p.S120N	TGAGCAGCCAGAG	.	26	8	20	0	.	.
HNRNPK	3190	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	9	86592623	86592623	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_031262	exon4	c.G137A	p.R46H	AGAATGCGTAATT	.	30	5	37	0	.	.
EYS	346007	hgsc.bcm.edu	37	6	66005908	66005908	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	EYS_ENST00000370621,caecum,carcinoma,0,2	EYS_ENST00000370621	NM_001142800	exon12	c.C1871A	p.S624X	TTGTGCGAAAGGG	.	21	2	51	0	.	0
CADM4	199731	hgsc.bcm.edu	37	19	44127517	44127517	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CADM4,colon,carcinoma,+2,1	CADM4	NM_145296	exon9	c.G1132A	p.D378N	GTCCGTCGCTGCC	.	45	2	50	0	.	+2
PPFIA3	8541	hgsc.bcm.edu	37	19	49651449	49651449	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PPFIA3,colon,carcinoma,0,1	PPFIA3	NM_003660	exon24	c.G2945T	p.R982L	ACGCTCGAATGTT	.	48	2	68	0	.	0
WAPAL	23063	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	10	88230836	88230836	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_015045	exon8	c.T2055G	p.C685W	CATGGCACATTTA	.	32	6	44	0	.	.
SLC9B2	133308	hgsc.bcm.edu;bcgsc.ca	37	4	103988622	103988622	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_178833	exon2	c.C86A	p.A29E	ACCTGTGCTTCTT	.	74	4	104	0	.	.
PCSK2	5126	hgsc.bcm.edu	37	20	17338992	17338992	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.,1	.	NM_002594	exon3	c.G303T	p.Q101H	GCAGCAGGAAGGA	.	75	3	58	1	.	112
SDHAF2	54949	hgsc.bcm.edu	37	11	61205106	61205106	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SDHAF2,colon,carcinoma,-1,1	SDHAF2	NM_017841	exon2	c.C46A	p.L16M	CTTGCTCTGTCAA	.	26	2	19	0	.	-1
SEMA5A	9037	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	9063091	9063091	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_003966	exon18	c.G2426A	p.R809H	CAAACACGCTTCC	.	49	10	47	0	.	.
CCDC83	220047	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	11	85597249	85597249	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CCDC83,NS,carcinoma,0,4	CCDC83	NM_173556	exon5	c.G350T	p.R117L	ATATGCGCATGCA	.	53	4	67	0	.	0
ZNF408	79797	hgsc.bcm.edu	37	11	46724728	46724728	+	Missense_Mutation	SNP	A	A	C	rs376220307	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZNF408,caecum,carcinoma,0,1	ZNF408	NM_024741	exon4	c.A587C	p.E196A	TGACAGAAGTGGA	.	18	2	15	0	.	0
KLK4	9622	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	19	51412609	51412609	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004917	exon2	c.G123A	p.S41S	GGGCTGCGAGTGC	.	37	4	48	0	.	.
SPG21	51324	hgsc.bcm.edu	37	15	65267060	65267060	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001127889	exon5	c.G332T	p.G111V	AAGCCTCCCAAAG	.	85	4	71	0	.	.
CD5L	922	hgsc.bcm.edu	37	1	157803043	157803043	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CD5L,NS,carcinoma,-1,1	CD5L	NM_005894	exon5	c.G978T	p.Q326H	TCTGTGCTGGCAC	.	37	2	19	0	.	-1
SLAMF6	114836	hgsc.bcm.edu	37	1	160458958	160458958	+	Nonsense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001184714	exon6	c.G799T	p.E267X	CGGACTCTGCTGT	.	70	4	40	0	.	.
CCDC66	285331	hgsc.bcm.edu	37	3	56653888	56653888	+	Nonsense_Mutation	SNP	C	C	T	rs374852204		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CCDC66_ENST00000394672,NS,carcinoma,0,2	CCDC66_ENST00000394672	NM_001141947	exon17	c.C2719T	p.R907X	AGGGATCGACAGC	.	28	2	43	0	.	0
PRDM6	93166	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	5	122506475	122506475	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001136239	exon6	c.C1169T	p.T390M	CTTCAACGGTAAT	.	47	10	59	0	.	.
ABCB4	5244	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	7	87053267	87053267	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018850	exon17	c.G2166A	p.G722G	AAGCCCCCCATTG	.	42	10	60	0	.	.
BRDT	676	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	92428423	92428423	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001242806	exon2	c.G112C	p.V38L	CAAAAAGTTGTCC	.	109	19	84	0	.	.
NPHP3-ACAD11	0	hgsc.bcm.edu	37	3	132436902	132436902	+	RNA	SNP	T	T	A	rs200159916		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	CCTTCATTTTTTT	.	79	5	103	0	.	.
FBXL4	26235	hgsc.bcm.edu	37	6	99323408	99323408	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FBXL4,colon,carcinoma,0,1	FBXL4	NM_012160	exon8	c.G1585A	p.A529T	GGTGTGCCAGTCT	.	40	2	53	0	.	0
TMEM69	51249	hgsc.bcm.edu	37	1	46159032	46159032	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TMEM69,NS,carcinoma,0,1	TMEM69	NM_016486	exon3	c.T199C	p.S67P	CATACATCCCCCT	.	40	2	44	0	.	0
FITM1	161247	hgsc.bcm.edu	37	14	24600887	24600887	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FITM1,face,carcinoma,0,1	FITM1	NM_203402	exon1	c.G115T	p.G39X	TACTTTGGAAGCG	.	46	2	69	0	.	0
SMIM17	147670	hgsc.bcm.edu	37	19	57157057	57157057	+	Nonsense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001193628	exon2	c.C22T	p.Q8X	CCTGAGCAGACAC	.	51	4	49	0	.	.
MAML2	84441	hgsc.bcm.edu	37	11	95825254	95825254	+	Silent	SNP	C	C	T	rs61749250	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MAML2,caecum,carcinoma,0,2	MAML2	NM_032427	exon2	c.G1941A	p.Q647Q	CTGCTGCTGTTGT	.	45	2	44	1	.	0
ERBB4	2066	hgsc.bcm.edu	37	2	212566887	212566887	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ERBB4,caecum,carcinoma,0,1	ERBB4	NM_001042599	exon12	c.C1294A	p.L432M	AGGACAGGCCACT	.	41	2	52	0	.	0
ND1	10625	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	MT	3850	3850	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	ENST00000361390	exon1	c.G544A	p.A182T	CCCTTGGCCATAA	.	66	11	17	0	.	.
ZFP64	55734	hgsc.bcm.edu	37	20	50768700	50768700	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_018197	exon6	c.C2031A	p.D677E	AATGGAGTCGGCG	.	53	4	42	0	.	.
KRBA2	124751	hgsc.bcm.edu	37	17	8274670	8274670	+	Nonsense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_213597	exon1	c.C183A	p.Y61X	GTCTCTGTAGCAA	.	76	3	70	0	.	.
TPM3	7170	hgsc.bcm.edu	37	1	154144580	154144580	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001043352	exon5	c.C456T	p.S152S	GCAACGGCTGTTA	.	58	3	61	0	.	.
PYURF	100996939	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	4	89443125	89443125	+	Missense_Mutation	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_032906	exon2	c.A259G	p.I87V	CAATGATTGGATA	.	32	12	50	0	.	.
DEFA1	1667	hgsc.bcm.edu	37	8	6873578	6873578	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	DEFA3,NS,carcinoma,0,1	DEFA3	NM_004084	exon3	c.C219T	p.C73C	TGCAATGCACGCT	.	69	3	70	0	.	0
COL4A3	1285	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	2	228148934	228148934	+	Silent	SNP	T	T	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	T	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_000091	exon34	c.T2754C	p.P918P	GAGCCCTGGAATT	.	62	4	71	0	.	.
LRIT3	345193	hgsc.bcm.edu	37	4	110788871	110788871	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	LRIT3,ear,carcinoma,0,1	LRIT3	NM_198506	exon3	c.G664A	p.A222T	GACCCTGCTATAG	.	34	3	46	1	.	0
IL9R	3581	hgsc.bcm.edu	37	X	155232673	155232673	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_176786	exon3	c.G272T	p.G91V	TCACAGGGGAAGG	.	81	4	79	0	.	.
CTSW	1521	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	65647690	65647690	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001335	exon2	c.G105A	p.P35P	CCAGCCGCTAGAG	.	104	30	96	0	.	.
ST5	6764	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	11	8752429	8752429	+	Missense_Mutation	SNP	C	C	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_005418	exon6	c.G408C	p.Q136H	CGTGCTCTGGGCA	.	31	9	34	0	.	.
A2MP1	3	hgsc.bcm.edu	37	12	9384345	9384345	+	RNA	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	GGAATTCATTCAA	.	92	4	97	0	.	.
SHC4	399694	hgsc.bcm.edu	37	15	49255141	49255141	+	Missense_Mutation	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SHC4,NS,carcinoma,0,1	SHC4	NM_203349	exon1	c.G72A	p.M24I	GTGCAGCATCCCG	.	59	3	50	0	.	0
PRSS37	136242	hgsc.bcm.edu	37	7	141536247	141536247	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PRSS37,NS,carcinoma,0,1	PRSS37	NM_001008270	exon5	c.C656A	p.T219N	ACATTGGTGTAGA	.	44	2	47	0	.	0
FUT6	2528	hgsc.bcm.edu	37	19	5831808	5831808	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FUT6,NS,carcinoma,0,1	FUT6	NM_000150	exon3	c.G771T	p.E257D	CAGCTTCTCGGTG	.	58	4	44	0	.	0
TRIM29	23650	hgsc.bcm.edu	37	11	120008077	120008077	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	TRIM29,NS,carcinoma,0,1	TRIM29	NM_012101	exon1	c.G663T	p.E221D	GCGGGCCTCAAAG	.	28	2	38	0	.	0
CIAO1	9391	hgsc.bcm.edu	37	2	96933103	96933103	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_004804	exon2	c.C184A	p.R62S	CACCAGCGCACCG	.	28	4	35	0	.	.
KIF1B	23095	hgsc.bcm.edu;bcgsc.ca	37	1	10351202	10351202	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_183416	exon14	c.G1359T	p.E453D	AACAGAGGCCATC	.	85	4	97	0	.	.
NUFIP1	26747	hgsc.bcm.edu	37	13	45563441	45563441	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012345	exon1	c.C131T	p.P44L	GGTGGCGGCAGCA	.	53	4	66	0	.	.
MUC4	4585	hgsc.bcm.edu	37	3	195505863	195505863	+	Silent	SNP	G	G	A	rs113561118		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MUC4_ENST00000463781,NS,carcinoma,0,1	MUC4_ENST00000463781	NM_018406	exon2	c.C12588T	p.T4196T	AGTGTCGGTGACA	.	81	4	73	1	.	0
CTSL3P	392360	hgsc.bcm.edu;broad.mit.edu;bcgsc.ca	37	9	90388066	90388066	+	RNA	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	AGCACAGGAAGGG	.	53	4	88	0	.	.
WNT10B	7480	hgsc.bcm.edu;broad.mit.edu;ucsc.edu	37	12	49360090	49360090	+	Nonsense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	WNT10B,NS,carcinoma,0,2	WNT10B	NM_003394	exon5	c.C958T	p.R320X	GGTCTCGCTCACA	.	104	21	124	0	.	0
KEAP1	9817	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	19	10610426	10610426	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_012289	exon2	c.C284T	p.A95V	TTGTGGGCCATGA	.	20	5	22	0	.	.
OLFM3	118427	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	1	102290693	102290693	+	Missense_Mutation	SNP	A	A	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_058170	exon4	c.T481C	p.S161P	CAGCAGACAGATT	.	69	10	67	0	.	.
PADI2	11240	hgsc.bcm.edu	37	1	17422416	17422416	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	PADI2,NS,carcinoma,0,1	PADI2	NM_007365	exon4	c.C399A	p.N133K	TGGGTTGTTCTTC	.	27	2	74	0	.	0
NCOA4	8031	hgsc.bcm.edu	37	10	51582263	51582263	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	NCOA4_ENST00000452682,NS,carcinoma,0,1	NCOA4_ENST00000452682	NM_001145261	exon7	c.G609T	p.M203I	CTCCATGCCAGAG	.	47	2	49	0	.	0
MLLT10P1	140678	hgsc.bcm.edu	37	20	29638065	29638065	+	RNA	SNP	A	A	G	rs2313019		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	AATTGTAACATTT	.	64	8	47	0	.	.
RSU1P2	100133308	hgsc.bcm.edu	37	10	45622894	45622894	+	RNA	SNP	A	A	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	A	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	GCTTCAATGCATC	.	38	5	35	0	.	.
CDH1	999	hgsc.bcm.edu	37	16	68835581	68835581	+	Missense_Mutation	SNP	G	G	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	CDH1,caecum,carcinoma,-2,1	CDH1	NM_004360	exon3	c.G172C	p.E58Q	AATTTTGAAGATT	.	48	2	43	0	.	-2
ACIN1	22985	hgsc.bcm.edu;ucsc.edu	37	14	23549704	23549704	+	Silent	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ACIN1,caecum,carcinoma,0,1	ACIN1	NM_001164814	exon6	c.G1014T	p.G338G	AAATCTCCCTCCT	.	41	4	72	0	.	0
NEB	4703	hgsc.bcm.edu	37	2	152426643	152426643	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	NEB_ENST00000427231,NS,carcinoma,0,3	NEB_ENST00000427231	NM_001271208	exon109	c.C17382A	p.D5794E	GTTCTGGTCGGGC	.	35	2	38	0	.	0
SVEP1	79987	hgsc.bcm.edu	37	9	113166721	113166721	+	Silent	SNP	C	C	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	SVEP1,NS,carcinoma,0,1	SVEP1	NM_153366	exon39	c.G9552A	p.P3184P	GTTTTCCGGGAGA	.	46	2	66	1	.	0
RYR3	6263	hgsc.bcm.edu;ucsc.edu;bcgsc.ca	37	15	33923424	33923424	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001243996	exon23	c.C2797A	p.L933M	TTGGCCCTGGGGT	.	44	4	34	0	.	.
OR2AG1	144125	hgsc.bcm.edu	37	11	6806283	6806283	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	C	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	OR2AG1,NS,carcinoma,0,1	OR2AG1	NM_001004489	exon1	c.C15A	p.N5K	CTGGAACTTCACC	.	26	2	44	0	.	0
LINC00303	0	broad.mit.edu	37	1	204005963	204005963	+	RNA	DEL	A	A	-	rs11462565	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TGTCTCAAAAAAA	.	6	2	5	0	A|0.750;-|0.250	.
ADAM21P1	0	broad.mit.edu;ucsc.edu	37	14	70713782	70713782	+	RNA	SNP	A	A	G	rs200469187		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	CCAGCAAATTTTG	.	38	8	53	1	A|0.994;G|0.006	.
CCDC88C	440193	broad.mit.edu	37	14	91744298	91744298	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	CCDC88C	NM_001080414	exon29	c.C5026A	p.L1676M	CCTCCAGGAACTC	.	38	3	72	0	.	192
.	0	broad.mit.edu	37	14	35390923	35390923	+	RNA	DEL	A	A	-	rs151058177	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	ACTCTGAAAAAAA	.	8	2	5	0	.	.
.	0	broad.mit.edu	37	15	102292811	102292811	+	RNA	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	Q3ZCN4_HUMAN,NS,carcinoma,0,3	.	.	.	.	.	CACTCGCGTGGGA	.	99	7	75	1	.	.
.	0	broad.mit.edu	37	15	102294715	102294715	+	RNA	SNP	C	C	T	rs377395363		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	GGCAGACCAAGGA	.	63	13	59	2	.	.
.	0	broad.mit.edu	37	15	102299958	102299958	+	RNA	SNP	C	C	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TCAGAGCTGCTGT	.	161	7	95	1	.	.
UBE2Q2P2	0	broad.mit.edu	37	15	82664400	82664400	+	RNA	DEL	T	T	-	rs200314743	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	AAAATCTTTTTTT	.	12	5	8	0	.	.
.	0	broad.mit.edu	37	17	60365420	60365429	+	RNA	DEL	CCTTTGGTCT	CCTTTGGTCT	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	AGTGTACCTTTGG	.	6	2	7	0	.	.
EMILIN2	84034	broad.mit.edu	37	18	2884988	2884988	+	Missense_Mutation	SNP	A	A	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	EMILIN2	NM_032048	exon3	c.A284T	p.Y95F	CTAGATATGTCAC	.	52	5	70	0	.	97
ZNF234	10780	broad.mit.edu	37	19	44661838	44661838	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ZNF234	NM_006630	exon6	c.G1669T	p.A557S	CTTCAAGCCCATC	.	44	3	51	0	.	132
LOC440905	0	broad.mit.edu	37	2	130805493	130805496	+	RNA	DEL	TTCT	TTCT	-	rs57595740	bycluster	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	CACACATTCTCAC	.	18	7	9	0	.	.
PLGLA	0	broad.mit.edu	37	2	107003270	107003270	+	RNA	DEL	A	A	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	AATGTTAAAAAAA	.	8	3	4	0	.	.
FAM182B	0	broad.mit.edu	37	20	25755549	25755549	+	Missense_Mutation	SNP	C	C	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	FAM182B,colon,carcinoma,0,1	FAM182B	.	.	.	.	CTGCAGCCTTCCT	.	101	11	102	2	.	6
TRPC4AP	26133	broad.mit.edu	37	20	33632325	33632325	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TRPC4AP	NM_199368	exon7	c.C848T	p.A283V	TCAGCTGCAGAAG	.	67	4	68	0	.	64
KIAA0226	9711	broad.mit.edu	37	3	197403835	197403835	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	KIAA0226	NM_014687	exon18	c.C2567A	p.T856N	GTCGCAGTCAGGT	.	31	3	48	0	.	136
PMCHL2	0	broad.mit.edu	37	5	70673207	70673207	+	RNA	DEL	A	A	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TCACTTAAAAAAA	.	7	3	6	0	.	.
ESYT2	57488	broad.mit.edu;bcgsc.ca	37	7	158560431	158560435	+	Frame_Shift_Del	DEL	ATATT	ATATT	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ESYT2	NM_020728	exon8	c.978_982del	p.326_328del	AGTTTGATATTAT	.	72	9	83	0	.	70
CSMD3	114788	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	113988300	113988300	+	Missense_Mutation	SNP	C	C	T	rs112359948		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	CSMD3	NM_198123	exon7	c.G1108A	p.V370I	TAGCAACAGCAAT	.	44	7	39	0	C|0.500;T|0.500	2325
SMIM19	114926	broad.mit.edu;ucsc.edu;bcgsc.ca	37	8	42403821	42403821	+	Missense_Mutation	SNP	A	A	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_001135675	exon3	c.A157C	p.I53L	ATGAGGATATTCA	.	68	11	84	0	.	.
MLLT3	4300	broad.mit.edu;bcgsc.ca	37	9	20414379	20414379	+	Silent	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	MLLT3,NS,carcinoma,0,8	MLLT3	NM_004529	exon5	c.C465T	p.S155S	GCTACTGCTGCTG	.	74	5	72	0	.	125
CYTB	4519	broad.mit.edu	37	MT	14900	14900	+	Missense_Mutation	SNP	G	G	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	ENST00000361789	exon1	c.G154A	p.A52T	TTCCTAGCCATGC	.	315	5	96	1	.	.
POLA1	5422	broad.mit.edu;ucsc.edu	37	X	24712122	24712122	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	POLA1	.	.	.	.	CGAGTGGTGAGGG	.	41	4	37	0	.	117
TMLHE-AS1	0	broad.mit.edu	37	X	154578865	154578865	+	RNA	DEL	G	G	-	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09								Untested	Somatic	Phase_I	WXS	none			Illumina GAIIx	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	CTCTCTGTTTTTT	.	24	6	19	0	.	.
NAV2	89797	ucsc.edu;bcgsc.ca	37	11	20101694	20101694	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	NAV2	NM_001244963	exon27	c.G5432T	p.S1811I	CCACCAGCCACTC	.	26	4	27	0	.	255
TICRR	90381	ucsc.edu;bcgsc.ca	37	15	90138623	90138623	+	Splice_Site	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	NM_152259	exon7	c.1682-1G>T	.	TTGGTAGGAGGGG	.	40	4	36	0	.	.
TCEA2	6919	ucsc.edu	37	20	62699440	62699440	+	Missense_Mutation	SNP	G	G	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	G					Unknown	Untested	Somatic		WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TCEA2	NM_003195	exon4	c.G282T	p.M94I	GGGCATGCCTCTG	.	37	4	20	0	.	22
TCEB3	6924	bcgsc.ca	37	1	24082492	24082492	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	TCEB3	NM_003198	exon8	c.G2029T	p.A677S	CAGTTCGCACATG	.	50	4	45	0	.	61
ZC3H8	84524	bcgsc.ca	37	2	112991747	112991747	+	Missense_Mutation	SNP	G	T	T	rs371803574	alternate_allele	TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	ZC3H8,NS,carcinoma,0,1	ZC3H8	NM_032494	exon5	c.C571A	p.R191S	CCTTGCGTTCCAC	.	66	4	60	0	.	17
SPATS2L	26010	bcgsc.ca	37	2	201337558	201337558	+	Missense_Mutation	SNP	C	G	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	SPATS2L	NM_001100423	exon12	c.C1064G	p.T355R	CAGTTACACATCC	.	18	3	24	0	.	88
.	0	bcgsc.ca	37	3	82856647	82856647	+	RNA	SNP	A	G	G	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	A	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	TTTTCAATTATAG	.	30	12	48	0	.	.
UGT2B15	7366	bcgsc.ca	37	4	69519938	69519938	+	Missense_Mutation	SNP	C	A	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	UGT2B15	NM_001076	exon5	c.G1130T	p.G377V	TTGGTTCCACCAT	.	81	4	135	0	.	48
GIGYF1	64599	bcgsc.ca	37	7	100285182	100285182	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	GIGYF1	NM_022574	exon4	c.G319A	p.A107T	GGCCAGCCCCTTT	.	12	3	24	0	.	113
MPZL2	10205	bcgsc.ca	37	11	118133264	118133264	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	MPZL2	NM_005797	exon3	c.C325A	p.L109I	AGAGAAGGATGGA	.	46	4	52	0	.	20
MAPK6	5597	bcgsc.ca	37	15	52338592	52338592	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	MAPK6	.	.	.	.	TTTGATGCCAGTT	.	65	4	61	0	.	70
GRIN2A	2903	bcgsc.ca	37	16	9943747	9943747	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	GRIN2A	NM_000833	exon6	c.C1194A	p.D398E	CTCACAGTCGGAG	.	36	4	25	0	.	366
ATP2A3	489	bcgsc.ca	37	17	3832041	3832041	+	Missense_Mutation	SNP	G	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	ATP2A3	NM_174956	exon20	c.C2896A	p.Q966K	CCCACTGGCGCCC	.	56	4	51	0	.	148
C17orf51	339263	bcgsc.ca	37	17	21438800	21438800	+	Splice_Site	SNP	C	A	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	C17orf51	NM_001113434	exon3	c.428-1G>T	.	ATGATTCTGTAGA	.	52	4	60	0	.	24
.	390844	bcgsc.ca	37	18	26232046	26232046	+	RNA	SNP	G	A	A	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	G	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	CTGCTCGTTGAGG	.	22	6	18	0	.	.
FCGBP	8857	bcgsc.ca	37	19	40360905	40360905	+	Missense_Mutation	SNP	C	T	T	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	C	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	FCGBP	NM_003890	exon33	c.G15503A	p.C5168Y	GGGATGCAGACAC	.	59	4	71	0	.	416
.	0	bcgsc.ca	37	22	16402217	16402217	+	RNA	SNP	T	C	C	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	T	-	-	-	-	-	Unknown	Untested	Somatic	Phase_1	WXS	none			Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	.	.	.	.	.	.	GCCTTATGATGGC	.	109	11	116	1	.	.
KRAS	3845	hgsc.bcm.edu;broad.mit.edu;ucsc.edu;bcgsc.ca	37	12	25380277	25380278	+	Missense_Mutation	DNP	GA	GA	TT	novel		TCGA-ZH-A8Y8-01A-51D-A417-09	TCGA-ZH-A8Y8-10A-01D-A41A-09	GA	GA	.	.	.	.	Unknown	Untested	Somatic	.	WXS	none	.	.	Illumina HiSeq	0d81bfe5-4f95-43dd-9849-9201dae94d08	91c49302-1a35-47b6-b352-db1a5a128928	KRAS_ENST00000256078,caecum,carcinoma,0,10	KRAS_ENST00000256078	NM_004985	exon3	c.T180A	p.Q61K	CTCTTGACCTGCT	.	40	8	39	0	.	0
