Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
LOXL4	84171	hgsc.bcm.edu	36	10	100010844	100010844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032211	exon4	c.C487T	p.P163S	.	.	.
CPN1	1369	hgsc.bcm.edu	36	10	101813455	101813455	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001308	exon5	c.C777T	p.S259S	.	.	.
CNNM2	54805	hgsc.bcm.edu	36	10	104669587	104669587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_199077	exon1	c.C1360T	p.R454W	.	.	.
MXI1	4601	hgsc.bcm.edu	36	10	112034659	112034659	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_130439	exon6	c.A812G	p.D271G	.	.	.
VTI1A	143187	hgsc.bcm.edu	36	10	114418735	114418735	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145206	exon7	c.G548T	p.G183V	.	.	.
NSMCE4A	54780	hgsc.bcm.edu	36	10	123717209	123717209	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001167865	exon4	c.G604A	p.G202S	.	.	.
CPXM2	119587	hgsc.bcm.edu	36	10	125548622	125548622	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198148	exon5	c.T737C	p.M246T	.	.	.
FANK1	92565	hgsc.bcm.edu	36	10	127686972	127686972	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145235	exon8	c.G712A	p.V238I	.	.	.
C10orf90	118611	hgsc.bcm.edu	36	10	128182684	128182684	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001004298	exon3	c.G1075A	p.A359T	.	.	.
CUBN	8029	hgsc.bcm.edu	36	10	17007390	17007390	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001081	exon43	c.C6502T	p.P2168S	.	.	.
YME1L1	10730	hgsc.bcm.edu	36	10	27449426	27449426	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014263	exon13	c.T1355C	p.V452A	.	.	.
ZEB1	6935	hgsc.bcm.edu	36	10	31849254	31849254	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001174093	exon6	c.C925T	p.R309W	.	.	.
DIP2C	22982	hgsc.bcm.edu	36	10	450003	450003	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014974	exon8	c.C907A	p.L303M	.	.	.
C10orf72	196740	hgsc.bcm.edu	36	10	49981831	49981831	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_144984	exon3	c.G538A	p.A180T	.	.	.
CSTF2T	23283	hgsc.bcm.edu	36	10	53128371	53128371	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015235	exon1	c.T945G	p.P315P	.	.	.
HERC4	26091	hgsc.bcm.edu	36	10	69463766	69463766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022079	exon6	c.G647A	p.R216H	.	.	.
MYPN	84665	hgsc.bcm.edu	36	10	69572847	69572847	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032578	exon3	c.A1047T	p.T349T	.	.	.
DDX50	79009	hgsc.bcm.edu	36	10	70340885	70340885	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024045	exon4	c.T516C	p.Y172Y	.	.	.
SAMD8	142891	hgsc.bcm.edu	36	10	76580653	76580653	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001174156	exon2	c.G361A	p.G121R	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7661900	7661900	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_030569	exon9	c.G1242A	p.T414T	.	.	.
COMTD1	118881	hgsc.bcm.edu	36	10	76663896	76663896	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_144589	exon7	c.A730C	p.R244R	.	.	.
MAT1A	4143	hgsc.bcm.edu	36	10	82026225	82026225	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000429	exon6	c.C655T	p.R219C	.	.	.
GRID1	2894	hgsc.bcm.edu	36	10	87397021	87397021	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017551	exon13	c.C2111T	p.T704M	.	.	.
IFIT5	24138	hgsc.bcm.edu	36	10	91167106	91167106	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012420	exon2	c.T170C	p.L57S	.	.	.
MARCH5	54708	hgsc.bcm.edu	36	10	94100855	94100855	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017824	exon6	c.G748T	p.G250X	.	.	.
SORBS1	10580	hgsc.bcm.edu	36	10	97086768	97086768	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001034954	exon28	c.C3139T	p.R1047X	.	.	.
DIP2C	22982	hgsc.bcm.edu	36	10	380977	380979	+	In_Frame_Del	DEL	GCC	GCC	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	GCC	GCC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014974	exon27	c.3303_3305del	p.1101_1102del	.	.	.
KIAA1826	84437	hgsc.bcm.edu	36	11	105385816	105385816	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032424	exon3	c.C694T	p.R232C	.	.	.
RAB39	54734	hgsc.bcm.edu	36	11	107304640	107304640	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017516	exon1	c.G136A	p.G46S	.	.	.
BACE1	23621	hgsc.bcm.edu	36	11	116666910	116666910	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138973	exon7	c.C801T	p.T267T	.	.	.
MLL	4297	hgsc.bcm.edu	36	11	117879795	117879795	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005933	exon27	c.G7969T	p.G2657C	.	.	.
USP2	9099	hgsc.bcm.edu	36	11	118733149	118733149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_171997	exon11	c.G1061A	p.R354H	.	.	.
ROBO4	54538	hgsc.bcm.edu	36	11	124272113	124272113	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_019055	exon2	c.C325T	p.L109L	.	.	.
KCNJ1	3758	hgsc.bcm.edu	36	11	128215164	128215164	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153765	exon3	c.T185C	p.M62T	.	.	.
CYP2R1	120227	hgsc.bcm.edu	36	11	14858297	14858297	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024514	exon3	c.T961C	p.W321R	.	.	.
KCNC1	3746	hgsc.bcm.edu	36	11	17749934	17749934	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004976	exon2	c.C717T	p.A239A	.	.	.
ODF3	113746	hgsc.bcm.edu	36	11	187383	187383	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_053280	exon2	c.G79T	p.G27X	.	.	.
ANO5	203859	hgsc.bcm.edu	36	11	22254269	22254269	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001142649	exon21	c.T2465C	p.M822T	.	.	.
GAS2	2620	hgsc.bcm.edu	36	11	22653114	22653114	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001143830	exon2	c.C123A	p.A41A	.	.	.
MUC15	143662	hgsc.bcm.edu	36	11	26541363	26541363	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145650	exon3	c.C720T	p.F240F	.	.	.
WT1	7490	hgsc.bcm.edu	36	11	32370141	32370141	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001198551	exon9	c.G749A	p.R250Q	 WT1,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,0 	.	.
CAPRIN1	4076	hgsc.bcm.edu	36	11	34057852	34057852	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_203364	exon7	c.T790C	p.S264P	.	.	.
CAT	847	hgsc.bcm.edu	36	11	34446479	34446479	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001752	exon11	c.C1395T	p.G465G	.	.	.
PRR5L	79899	hgsc.bcm.edu	36	11	36381494	36381494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001160169	exon2	c.G235A	p.E79K	.	.	.
B4GALNT4	338707	hgsc.bcm.edu	36	11	370881	370881	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_178537	exon19	c.C2926T	p.R976W	.	.	.
LRRC4C	57689	hgsc.bcm.edu	36	11	40093522	40093522	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020929	exon2	c.T897C	p.H299H	.	.	.
APLNR	187	hgsc.bcm.edu	36	11	56760512	56760512	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005161	exon1	c.C543T	p.C181C	.	.	.
CD6	923	hgsc.bcm.edu	36	11	60542419	60542419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006725	exon12	c.G1920A	p.S640S	.	.	.
VWCE	220001	hgsc.bcm.edu	36	11	60805060	60805060	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152718	exon8	c.G1011A	p.L337L	.	.	.
AHNAK	79026	hgsc.bcm.edu	36	11	62041138	62041138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001620	exon5	c.C17327T	p.P5776L	.	.	.
MTA2	9219	hgsc.bcm.edu	36	11	62118084	62118084	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004739	exon18	c.C1846A	p.L616I	.	.	.
INTS5	80789	hgsc.bcm.edu	36	11	62172450	62172450	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_030628	exon2	c.C1678T	p.R560W	.	.	.
DPF2	5977	hgsc.bcm.edu	36	11	64872956	64872956	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006268	exon10	c.G1077A	p.P359P	.	.	.
YIF1A	10897	hgsc.bcm.edu	36	11	65811682	65811682	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020470	exon4	c.C390T	p.P130P	.	.	.
BBS1	582	hgsc.bcm.edu	36	11	66035107	66035107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024649	exon2	c.C95T	p.A32V	.	.	.
SPTBN2	6712	hgsc.bcm.edu	36	11	66217252	66217252	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006946	exon23	c.T4835C	p.M1612T	.	.	.
LRP5	4041	hgsc.bcm.edu	36	11	67961028	67961028	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002335	exon19	c.G4096A	p.D1366N	.	.	.
NLRP14	338323	hgsc.bcm.edu	36	11	7020349	7020349	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_176822	exon4	c.C516T	p.T172T	.	.	.
DHCR7	1717	hgsc.bcm.edu	36	11	70832848	70832848	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001360	exon4	c.G160A	p.V54I	.	.	.
NUMA1	4926	hgsc.bcm.edu	36	11	71411067	71411067	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006185	exon7	c.C338A	p.P113H	.	.	.
NUMA1	4926	hgsc.bcm.edu	36	11	71413027	71413027	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006185	exon5	c.A149G	p.Q50R	.	.	.
DNAJB13	374407	hgsc.bcm.edu	36	11	73357053	73357053	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153614	exon6	c.C622T	p.P208S	.	.	.
SLCO2B1	11309	hgsc.bcm.edu	36	11	74581925	74581925	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001145212	exon6	c.C658T	p.L220L	.	.	.
WNT11	7481	hgsc.bcm.edu	36	11	75575770	75575770	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004626	exon5	c.A1052G	p.Y351C	.	.	.
ME3	10873	hgsc.bcm.edu	36	11	85945305	85945305	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001161586	exon4	c.C405T	p.I135I	.	.	.
DENND5A	23258	hgsc.bcm.edu	36	11	9182265	9182265	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015213	exon4	c.T467C	p.M156T	.	.	.
UTP20	27340	hgsc.bcm.edu	36	12	100288458	100288458	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014503	exon50	c.T6673G	p.F2225V	.	.	.
STAB2	55576	hgsc.bcm.edu	36	12	102668544	102668544	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017564	exon60	c.C6496T	p.P2166S	.	.	.
NT5DC3	51559	hgsc.bcm.edu	36	12	102703268	102703268	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001031701	exon12	c.T1304C	p.L435S	.	.	.
UBE3B	89910	hgsc.bcm.edu	36	12	108432597	108432597	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_130466	exon17	c.G1807A	p.E603K	.	.	.
ACAD10	80724	hgsc.bcm.edu	36	12	110669263	110669263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_025247	exon15	c.G2284A	p.G762S	.	.	.
RBM19	9904	hgsc.bcm.edu	36	12	112745475	112745475	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016196	exon24	c.C2820T	p.D940D	.	.	.
TBX5	6910	hgsc.bcm.edu	36	12	113316992	113316992	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000192	exon6	c.G600A	p.A200A	.	.	.
ETV6	2120	hgsc.bcm.edu	36	12	11913936	11913936	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001987	exon5	c.C775G	p.R259G	.	.	.
UNQ1887	121665	hgsc.bcm.edu	36	12	119732995	119732995	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_139015	exon2	c.G101A	p.R34K	.	.	.
B3GNT4	79369	hgsc.bcm.edu	36	12	121257620	121257620	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_030765	exon3	c.G869A	p.R290H	.	.	.
PITPNM2	57605	hgsc.bcm.edu	36	12	122038104	122038104	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020845	exon21	c.C3170T	p.T1057M	.	.	.
PITPNM2	57605	hgsc.bcm.edu	36	12	122051315	122051315	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020845	exon9	c.G1187T	p.R396M	.	.	.
CCDC92	80212	hgsc.bcm.edu	36	12	122988154	122988154	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_025140	exon5	c.C400A	p.L134M	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128132448	128132448	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_133448	exon7	c.C1732T	p.R578W	.	.	.
EP400	57634	hgsc.bcm.edu	36	12	131063549	131063549	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015409	exon17	c.T3481C	p.Y1161H	.	.	.
ZNF605	90462	hgsc.bcm.edu	36	12	132012505	132012505	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_183238	exon5	c.A1453G	p.T485A	.	.	.
PPFIBP1	8496	hgsc.bcm.edu	36	12	27736823	27736823	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001198915	exon26	c.A2457G	p.I819M	.	.	.
CNTN1	1272	hgsc.bcm.edu	36	12	39598758	39598758	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_175038	exon3	c.A112G	p.N38D	.	.	.
PDZRN4	29951	hgsc.bcm.edu	36	12	40253801	40253801	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001164595	exon10	c.A2953C	p.I985L	.	.	.
IRAK4	51135	hgsc.bcm.edu	36	12	42457790	42457790	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016123	exon7	c.A807G	p.S269S	.	.	.
DBX2	440097	hgsc.bcm.edu	36	12	43703886	43703886	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001004329	exon3	c.C558A	p.G186G	.	.	.
ARID2	196528	hgsc.bcm.edu	36	12	44531785	44531785	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152641	exon15	c.C3612T	p.S1204S	.	.	.
RAPGEF3	10411	hgsc.bcm.edu	36	12	46419214	46419214	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001098532	exon23	c.T2314C	p.F772L	.	.	.
HDAC7	51564	hgsc.bcm.edu	36	12	46477469	46477469	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001098416	exon6	c.G542A	p.S181N	.	.	.
DIP2B	57609	hgsc.bcm.edu	36	12	49398839	49398839	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_173602	exon24	c.C2932T	p.Q978X	.	.	.
METTL7A	25840	hgsc.bcm.edu	36	12	49610007	49610007	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014033	exon2	c.C542T	p.S181L	.	.	.
TFCP2	7024	hgsc.bcm.edu	36	12	49779780	49779780	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001173452	exon12	c.T1201A	p.L401M	.	.	.
KRT80	144501	hgsc.bcm.edu	36	12	50853735	50853735	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182507	exon5	c.C747T	p.S249S	.	.	.
KRT85	3891	hgsc.bcm.edu	36	12	51041034	51041034	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002283	exon9	c.G1394A	p.R465H	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51963472	51963472	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012291	exon16	c.T2960C	p.V987A	.	.	.
ESPL1	9700	hgsc.bcm.edu	36	12	51971863	51971863	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012291	exon26	c.G5643T	p.Q1881H	.	.	.
PCBP2	5094	hgsc.bcm.edu	36	12	52142552	52142552	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001128911	exon8	c.G525A	p.P175P	.	.	.
DGKA	1606	hgsc.bcm.edu	36	12	54620212	54620212	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001345	exon10	c.G789T	p.K263N	.	.	.
SILV	6490	hgsc.bcm.edu	36	12	54635545	54635545	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006928	exon9	c.G1732A	p.A578T	.	.	.
SCNN1A	6337	hgsc.bcm.edu	36	12	6333874	6333874	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001159576	exon7	c.A1528C	p.S510R	.	.	.
NINJ2	4815	hgsc.bcm.edu	36	12	642792	642792	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016533	exon1	c.G134A	p.S45N	.	.	.
HELB	92797	hgsc.bcm.edu	36	12	64984894	64984894	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033647	exon2	c.T304C	p.Y102H	.	.	.
CAND1	55832	hgsc.bcm.edu	36	12	65987452	65987452	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018448	exon11	c.T2938A	p.Y980N	.	.	.
BEST3	144453	hgsc.bcm.edu	36	12	68335742	68335742	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152439	exon6	c.A580G	p.S194G	.	.	.
FGD6	55785	hgsc.bcm.edu	36	12	94026257	94026257	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018351	exon11	c.C3262T	p.R1088W	.	.	.
TSPAN8	7103	hgsc.bcm.edu	36	12	69837695	69837697	+	In_Frame_Del	DEL	AAT	AAT	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	AAT	AAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004616	exon2	c.29_31del	p.10_11del	.	.	.
PSMD9	5715	hgsc.bcm.edu	36	12	120811285	120811285	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	.	.	.	.	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100553546	100553546	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_052867	exon26	c.G3035A	p.S1012N	.	.	.
NALCN	259232	hgsc.bcm.edu	36	13	100554754	100554754	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_052867	exon25	c.T2782A	p.F928I	.	.	.
TPP2	7174	hgsc.bcm.edu	36	13	102080530	102080530	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003291	exon10	c.T1228C	p.S410P	.	.	.
ERCC5	2073	hgsc.bcm.edu	36	13	102317154	102317154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000123	exon11	c.T2491C	p.F831L	.	.	.
ABHD13	84945	hgsc.bcm.edu	36	13	107680413	107680413	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032859	exon2	c.C846T	p.L282L	.	.	.
COL4A1	1282	hgsc.bcm.edu	36	13	109605645	109605645	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001845	exon50	c.T4741C	p.Y1581H	.	.	.
COL4A1	1282	hgsc.bcm.edu	36	13	109636877	109636877	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001845	exon26	c.C1753T	p.R585C	.	.	.
ING1	3621	hgsc.bcm.edu	36	13	110169924	110169924	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198219	exon2	c.G484A	p.A162T	.	.	.
ATP4B	496	hgsc.bcm.edu	36	13	113351759	113351759	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000705	exon7	c.C807T	p.H269H	.	.	.
CDX2	1045	hgsc.bcm.edu	36	13	27435485	27435485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001265	exon3	c.C709T	p.R237C	.	.	.
FLT3	2322	hgsc.bcm.edu	36	13	27534174	27534174	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004119	exon3	c.G198A	p.A66A	.	.	.
DCLK1	9201	hgsc.bcm.edu	36	13	35265572	35265572	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001195416	exon12	c.A1068G	p.G356G	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38164192	38164192	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_207361	exon1	c.A4711G	p.T1571A	.	.	.
NARG1L	79612	hgsc.bcm.edu	36	13	40830476	40830476	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024561	exon11	c.G1124T	p.W375L	.	.	.
MLNR	2862	hgsc.bcm.edu	36	13	48694457	48694457	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001507	exon2	c.T1182C	p.T394T	.	.	.
EIF5	1983	hgsc.bcm.edu	36	14	102875876	102875876	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_183004	exon9	c.A1054G	p.I352V	.	.	.
CDCA4	55038	hgsc.bcm.edu	36	14	104548782	104548782	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017955	exon2	c.T530C	p.M177T	.	.	.
SALL2	6297	hgsc.bcm.edu	36	14	21061639	21061639	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005407	exon2	c.G2063A	p.R688Q	.	.	.
SLC7A8	23428	hgsc.bcm.edu	36	14	22682221	22682221	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012244	exon4	c.C541T	p.R181W	.	.	.
ADCY4	196883	hgsc.bcm.edu	36	14	23861157	23861157	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001198592	exon21	c.T2541G	p.P847P	.	.	.
G2E3	55632	hgsc.bcm.edu	36	14	30125762	30125762	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017769	exon3	c.A125G	p.Y42C	.	.	.
SOS2	6655	hgsc.bcm.edu	36	14	49686509	49686509	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006939	exon14	c.G2351A	p.R784H	.	.	.
FERMT2	10979	hgsc.bcm.edu	36	14	52409289	52409289	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001134999	exon10	c.A1251G	p.P417P	.	.	.
KTN1	3895	hgsc.bcm.edu	36	14	55192596	55192596	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004986	exon29	c.T2885G	p.L962R	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64337335	64337335	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001024858	exon7	c.C768A	p.V256V	.	.	.
SLC8A3	6547	hgsc.bcm.edu	36	14	69703269	69703269	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033262	exon2	c.A1624G	p.S542G	.	.	.
TMED10	10972	hgsc.bcm.edu	36	14	74712869	74712869	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006827	exon1	c.G167A	p.G56D	.	.	.
NRXN3	9369	hgsc.bcm.edu	36	14	78502411	78502411	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004796	exon9	c.T1567C	p.F523L	.	.	.
CATSPERB	79820	hgsc.bcm.edu	36	14	91144477	91144477	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024764	exon22	c.A2623G	p.M875V	.	.	.
KIAA1409	57578	hgsc.bcm.edu	36	14	93074148	93074148	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020818	exon12	c.C652T	p.R218C	.	.	.
TCL1A	8115	hgsc.bcm.edu	36	14	95247845	95247845	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021966	exon3	c.A345G	p.X115W	.	.	.
PAPOLA	10914	hgsc.bcm.edu	36	14	96092306	96092306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032632	exon19	c.G1807A	p.A603T	.	.	.
CYFIP1	23191	hgsc.bcm.edu	36	15	20509716	20509716	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014608	exon17	c.A1918G	p.I640V	.	.	.
THBS1	7057	hgsc.bcm.edu	36	15	37671012	37671012	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003246	exon16	c.C2428T	p.R810W	.	.	.
HAUS2	55142	hgsc.bcm.edu	36	15	40640869	40640869	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001130447	exon3	c.A273G	p.L91L	.	.	.
B2M	567	hgsc.bcm.edu	36	15	42791037	42791037	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004048	exon1	c.A1C	p.M1L	.	.	.
DUOX1	53905	hgsc.bcm.edu	36	15	43223595	43223595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017434	exon18	c.G2006A	p.R669H	.	.	.
SECISBP2L	9728	hgsc.bcm.edu	36	15	47080431	47080431	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014701	exon14	c.A2048G	p.H683R	.	.	.
CYP19A1	1588	hgsc.bcm.edu	36	15	49290326	49290326	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031226	exon11	c.A1483T	p.R495X	.	.	.
WDR72	256764	hgsc.bcm.edu	36	15	51796124	51796124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182758	exon4	c.C311T	p.T104I	.	.	.
USP3	9960	hgsc.bcm.edu	36	15	61649737	61649737	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006537	exon9	c.C814A	p.L272I	.	.	.
ANKDD1A	348094	hgsc.bcm.edu	36	15	63001217	63001217	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182703	exon4	c.A312G	p.L104L	.	.	.
CYP1A2	1544	hgsc.bcm.edu	36	15	72832632	72832632	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000761	exon6	c.C1221A	p.V407V	.	.	.
KIAA1024	23251	hgsc.bcm.edu	36	15	77537069	77537069	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015206	exon2	c.G1525T	p.D509Y	.	.	.
MESDC2	23184	hgsc.bcm.edu	36	15	79061496	79061496	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015154	exon2	c.G296A	p.S99N	.	.	.
ZSCAN2	54993	hgsc.bcm.edu	36	15	82965535	82965535	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_181877	exon3	c.G1105A	p.E369K	.	.	.
AKAP13	11214	hgsc.bcm.edu	36	15	83919507	83919507	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006738	exon6	c.T804C	p.P268P	.	.	.
C15orf42	90381	hgsc.bcm.edu	36	15	87969388	87969388	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152259	exon20	c.A4843C	p.S1615R	.	.	.
BLM	641	hgsc.bcm.edu	36	15	89113410	89113410	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000057	exon11	c.A2351G	p.Y784C	.	.	.
MAN2A2	4122	hgsc.bcm.edu	36	15	89262494	89262494	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006122	exon20	c.G3061A	p.A1021T	.	.	.
TTC23	64927	hgsc.bcm.edu	36	15	97586420	97586420	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001040659	exon2	c.C21T	p.T7T	.	.	.
ADAMTS17	170691	hgsc.bcm.edu	36	15	98474587	98474587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_139057	exon13	c.G1876A	p.V626M	.	.	.
EIF3J	8669	hgsc.bcm.edu	36	15	42630391	42630392	+	Frame_Shift_Del	DEL	AA	AA	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	AA	AA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003758	exon3	c.173_174del	p.58_58del	.	.	.
NUBP1	4682	hgsc.bcm.edu	36	16	10759271	10759271	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002484	exon7	c.G492T	p.E164D	.	.	.
ZC3H7A	29066	hgsc.bcm.edu	36	16	11780637	11780637	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014153	exon4	c.C192T	p.S64S	.	.	.
ABCA3	21	hgsc.bcm.edu	36	16	2290121	2290121	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001089	exon13	c.G1497T	p.A499A	.	.	.
CCNF	899	hgsc.bcm.edu	36	16	2428102	2428102	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001761	exon6	c.G571A	p.G191S	.	.	.
SEZ6L2	26470	hgsc.bcm.edu	36	16	29815693	29815693	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001114100	exon3	c.G462A	p.T154T	.	.	.
ITGAL	3683	hgsc.bcm.edu	36	16	30417963	30417963	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001114380	exon14	c.G1651A	p.V551M	.	.	.
PRR14	78994	hgsc.bcm.edu	36	16	30573548	30573548	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024031	exon8	c.C756T	p.S252S	.	.	.
CREBBP	1387	hgsc.bcm.edu	36	16	3840431	3840431	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004380	exon2	c.T666C	p.A222A	.	.	.
PHKB	5257	hgsc.bcm.edu	36	16	46171764	46171764	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001031835	exon9	c.C747T	p.G249G	.	.	.
N-PAC	84656	hgsc.bcm.edu	36	16	4801285	4801285	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032569	exon15	c.G1474T	p.G492X	.	.	.
PPL	5493	hgsc.bcm.edu	36	16	4880237	4880237	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002705	exon18	c.C2262A	p.P754P	.	.	.
CES1	1066	hgsc.bcm.edu	36	16	54410997	54410997	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001266	exon7	c.G854A	p.C285Y	.	.	.
CNOT1	23019	hgsc.bcm.edu	36	16	57170193	57170193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_206999	exon13	c.C1495T	p.R499C	.	.	.
CDH11	1009	hgsc.bcm.edu	36	16	63590114	63590114	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001797	exon4	c.G375A	p.T125T	.	.	.
CDH16	1014	hgsc.bcm.edu	36	16	65504616	65504616	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004062	exon9	c.C973T	p.L325L	.	.	.
CTCF	10664	hgsc.bcm.edu	36	16	66220907	66220907	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001191022	exon8	c.C823T	p.R275C	.	.	.
CTRL	1506	hgsc.bcm.edu	36	16	66521483	66521483	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001907	exon7	c.C650A	p.P217H	.	.	.
ZNF23	7571	hgsc.bcm.edu	36	16	70040265	70040265	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145911	exon6	c.T1164C	p.G388G	.	.	.
CHST4	10164	hgsc.bcm.edu	36	16	70128851	70128851	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001166395	exon2	c.A770G	p.Y257C	.	.	.
DHX38	9785	hgsc.bcm.edu	36	16	70695014	70695014	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014003	exon13	c.C1650T	p.I550I	.	.	.
A2BP1	54715	hgsc.bcm.edu	36	16	7508327	7508327	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145893	exon2	c.G265A	p.A89T	.	.	.
ADAMTS18	170692	hgsc.bcm.edu	36	16	75911280	75911280	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_199355	exon16	c.G2499A	p.A833A	.	.	.
MBTPS1	8720	hgsc.bcm.edu	36	16	82651864	82651864	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003791	exon20	c.G2628A	p.P876P	.	.	.
MYO1C	4641	hgsc.bcm.edu	36	17	1329650	1329650	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001080950	exon8	c.A949G	p.K317E	.	.	.
NCOR1	9611	hgsc.bcm.edu	36	17	15901735	15901735	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001190440	exon39	c.G5901A	p.S1967S	.	.	.
TRPV2	51393	hgsc.bcm.edu	36	17	16279000	16279000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016113	exon14	c.G2186A	p.G729D	.	.	.
TAOK1	57551	hgsc.bcm.edu	36	17	24826831	24826831	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020791	exon4	c.T222C	p.I74I	.	.	.
LIG3	3980	hgsc.bcm.edu	36	17	30352410	30352410	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013975	exon17	c.A2353G	p.T785A	.	.	.
UNC45B	146862	hgsc.bcm.edu	36	17	30519343	30519343	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_173167	exon10	c.C1302T	p.R434R	.	.	.
IGFBP4	3487	hgsc.bcm.edu	36	17	35863838	35863838	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Sanger_PCR_WGA			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001552	exon3	c.C640T	p.Q214X	.	.	.
KRT13	3860	hgsc.bcm.edu	36	17	36914919	36914919	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153490	exon1	c.G410A	p.R137H	.	.	.
KRT9	3857	hgsc.bcm.edu	36	17	36977071	36977071	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000226	exon7	c.G1852A	p.G618R	.	.	.
ETV4	2118	hgsc.bcm.edu	36	17	38966804	38966804	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001986	exon6	c.G332A	p.S111N	.	.	.
G6PC3	92579	hgsc.bcm.edu	36	17	39508221	39508221	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138387	exon5	c.C553T	p.L185L	.	.	.
FZD2	2535	hgsc.bcm.edu	36	17	39991721	39991721	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001466	exon1	c.C1139T	p.P380L	.	.	.
SPOP	8405	hgsc.bcm.edu	36	17	45040237	45040237	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001007229	exon8	c.A712G	p.K238E	.	.	.
MYCBPAP	84073	hgsc.bcm.edu	36	17	45956069	45956069	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032133	exon12	c.T1689C	p.G563G	.	.	.
ABCC3	8714	hgsc.bcm.edu	36	17	46101536	46101536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003786	exon16	c.C1974T	p.A658A	.	.	.
CHRNE	1145	hgsc.bcm.edu	36	17	4746340	4746340	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000080	exon4	c.C295T	p.R99X	.	.	.
GPR172B	55065	hgsc.bcm.edu	36	17	4877633	4877633	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017986	exon3	c.T875C	p.V292A	.	.	.
ZFP3	124961	hgsc.bcm.edu	36	17	4935672	4935672	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153018	exon2	c.A149G	p.H50R	.	.	.
STXBP4	252983	hgsc.bcm.edu	36	17	50505297	50505297	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_178509	exon13	c.G1049A	p.R350H	.	.	.
ABCA10	10349	hgsc.bcm.edu	36	17	64659790	64659790	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_080282	exon37	c.T4386G	p.A1462A	.	.	.
ABCA10	10349	hgsc.bcm.edu	36	17	64698988	64698988	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_080282	exon18	c.T1935C	p.P645P	.	.	.
C17orf49	124944	hgsc.bcm.edu	36	17	6860676	6860676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001142798	exon4	c.C357T	p.S119S	.	.	.
DNAI2	64446	hgsc.bcm.edu	36	17	69789573	69789573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_023036	exon2	c.G22A	p.V8I	.	.	.
TMEM104	54868	hgsc.bcm.edu	36	17	70293254	70293254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017728	exon3	c.G84A	p.T28T	.	.	.
QRICH2	84074	hgsc.bcm.edu	36	17	71798827	71798827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032134	exon4	c.G3078A	p.T1026T	.	.	.
RHBDF2	79651	hgsc.bcm.edu	36	17	71979486	71979486	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024599	exon19	c.T2395C	p.Y799H	.	.	.
ST6GALNAC2	10610	hgsc.bcm.edu	36	17	72075138	72075138	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006456	exon8	c.T949C	p.C317R	.	.	.
SLC26A11	284129	hgsc.bcm.edu	36	17	75816265	75816265	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001166349	exon6	c.A647C	p.K216T	.	.	.
RNF213	57674	hgsc.bcm.edu	36	17	75956532	75956532	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020914	exon45	c.C12296T	p.A4099V	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7661400	7661400	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020877	exon64	c.T9962C	p.M3321T	.	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7661404	7661404	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020877	exon64	c.A9966G	p.G3322G	.	.	.
FAM38B	63895	hgsc.bcm.edu	36	18	10686188	10686188	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022068	exon43	c.G6735T	p.V2245V	.	.	.
DSC2	1824	hgsc.bcm.edu	36	18	26920572	26920572	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004949	exon7	c.G907A	p.V303M	.	.	.
CDH20	28316	hgsc.bcm.edu	36	18	57372500	57372500	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031891	exon11	c.C1998T	p.D666D	.	.	.
CDH19	28513	hgsc.bcm.edu	36	18	62369423	62369423	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021153	exon5	c.G663T	p.W221C	.	.	.
DOK6	220164	hgsc.bcm.edu	36	18	65557318	65557318	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152721	exon6	c.G737A	p.R246Q	.	.	.
LAMA1	284217	hgsc.bcm.edu	36	18	6972566	6972566	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005559	exon41	c.C5820T	p.N1940N	.	.	.
MBP	4155	hgsc.bcm.edu	36	18	72858146	72858146	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001025100	exon4	c.G206A	p.R69H	.	.	.
ATP9B	374868	hgsc.bcm.edu	36	18	75168216	75168216	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198531	exon15	c.G1767A	p.P589P	.	.	.
C18orf22	79863	hgsc.bcm.edu	36	18	75905220	75905220	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001171967	exon5	c.C512T	p.S171L	.	.	.
KANK2	25959	hgsc.bcm.edu	36	19	11147619	11147619	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001136191	exon8	c.A1807C	p.K603Q	.	.	.
C19orf39	126074	hgsc.bcm.edu	36	19	11347473	11347473	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_175871	exon2	c.G471A	p.L157L	.	.	.
NACC1	112939	hgsc.bcm.edu	36	19	13110059	13110059	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_052876	exon6	c.T1423G	p.W475G	.	.	.
IL27RA	9466	hgsc.bcm.edu	36	19	14020987	14020987	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004843	exon10	c.G1263A	p.T421T	.	.	.
SLC5A5	6528	hgsc.bcm.edu	36	19	17855505	17855505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000453	exon11	c.A1258G	p.M420V	.	.	.
BRUNOL5	60680	hgsc.bcm.edu	36	19	3244431	3244431	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021938	exon12	c.G1445T	p.G482V	.	.	.
ANKRD27	84079	hgsc.bcm.edu	36	19	37787167	37787167	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032139	exon25	c.G2497A	p.G833R	.	.	.
SLC7A10	56301	hgsc.bcm.edu	36	19	38393318	38393318	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_019849	exon9	c.G1158A	p.T386T	.	.	.
APLP1	333	hgsc.bcm.edu	36	19	41061879	41061879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001024807	exon16	c.G1777A	p.G593R	.	.	.
ALKBH6	84964	hgsc.bcm.edu	36	19	41196973	41196973	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198867	exon1	c.G3T	p.M1I	.	.	.
ACTN4	81	hgsc.bcm.edu	36	19	43887425	43887425	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004924	exon4	c.G409A	p.G137S	.	.	.
SUPT5H	6829	hgsc.bcm.edu	36	19	44642385	44642385	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003169	exon9	c.G569A	p.R190Q	.	.	.
TEX101	83639	hgsc.bcm.edu	36	19	48614245	48614245	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031451	exon9	c.C660A	p.P220P	.	.	.
PVRL2	5819	hgsc.bcm.edu	36	19	50067005	50067005	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002856	exon3	c.G534A	p.T178T	.	.	.
DMWD	1762	hgsc.bcm.edu	36	19	50986127	50986127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004943	exon2	c.G500A	p.C167Y	.	.	.
DMWD	1762	hgsc.bcm.edu	36	19	50987460	50987460	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004943	exon1	c.G395A	p.R132H	.	.	.
TEAD2	8463	hgsc.bcm.edu	36	19	54542272	54542272	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003598	exon9	c.T896C	p.L299P	.	.	.
SCAF1	58506	hgsc.bcm.edu	36	19	54849796	54849796	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021228	exon9	c.C3475A	p.P1159T	.	.	.
KLK5	25818	hgsc.bcm.edu	36	19	56138781	56138781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001077492	exon6	c.C800T	p.A267V	.	.	.
SIGLEC8	27181	hgsc.bcm.edu	36	19	56653067	56653067	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014442	exon1	c.A387G	p.G129G	.	.	.
HAS1	3036	hgsc.bcm.edu	36	19	56908971	56908971	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001523	exon5	c.C1258T	p.L420L	.	.	.
HAS1	3036	hgsc.bcm.edu	36	19	56914287	56914287	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001523	exon2	c.C686T	p.S229L	.	.	.
ZNF432	9668	hgsc.bcm.edu	36	19	57229235	57229235	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014650	exon5	c.T1509C	p.H503H	.	.	.
PPP2R1A	5518	hgsc.bcm.edu	36	19	57406366	57406366	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014225	exon4	c.G312A	p.V104V	.	.	.
ZNF677	342926	hgsc.bcm.edu	36	19	58433460	58433460	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182609	exon5	c.A332G	p.D111G	.	.	.
PRKCG	5582	hgsc.bcm.edu	36	19	59077628	59077628	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002739	exon1	c.G68A	p.G23E	.	.	.
LILRB4	11006	hgsc.bcm.edu	36	19	59867263	59867263	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006847	exon3	c.G310A	p.V104I	.	.	.
ZSCAN22	342945	hgsc.bcm.edu	36	19	63541598	63541598	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_181846	exon3	c.A570G	p.S190S	.	.	.
SLC25A23	79085	hgsc.bcm.edu	36	19	6403332	6403332	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024103	exon8	c.C1062A	p.A354A	.	.	.
ATF6	22926	hgsc.bcm.edu	36	1	160002776	160002777	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_007348	exon1	c.2_3insG	p.M1fs	.	.	.
CASZ1	54897	hgsc.bcm.edu	36	1	10638403	10638403	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001079843	exon9	c.G1555A	p.D519N	.	.	.
VAV3	10451	hgsc.bcm.edu	36	1	107961722	107961722	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006113	exon21	c.C1970A	p.P657H	.	.	.
MASP2	10747	hgsc.bcm.edu	36	1	11009903	11009903	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006610	exon11	c.A1687G	p.R563G	.	.	.
CD53	963	hgsc.bcm.edu	36	1	111236678	111236678	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000560	exon3	c.G252A	p.S84S	.	.	.
PHTF1	10745	hgsc.bcm.edu	36	1	114050182	114050182	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006608	exon12	c.T1524C	p.I508I	.	.	.
TRIM45	80263	hgsc.bcm.edu	36	1	117457609	117457609	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001145635	exon5	c.G1435A	p.V479M	.	.	.
MTHFR	4524	hgsc.bcm.edu	36	1	11782915	11782915	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005957	exon4	c.T527C	p.V176A	.	.	.
MTHFR	4524	hgsc.bcm.edu	36	1	11783837	11783837	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005957	exon3	c.T443G	p.L148R	.	.	.
PRDM2	7799	hgsc.bcm.edu	36	1	13979777	13979777	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001007257	exon3	c.C2297A	p.P766H	.	.	.
ZNF687	57592	hgsc.bcm.edu	36	1	149529306	149529306	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020832	exon7	c.G3049A	p.E1017K	.	.	.
HRNR	388697	hgsc.bcm.edu	36	1	150459017	150459017	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001009931	exon3	c.G1712A	p.R571H	.	.	.
SLC39A1	27173	hgsc.bcm.edu	36	1	152201662	152201662	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014437	exon3	c.C154T	p.L52L	.	.	.
CHRNB2	1141	hgsc.bcm.edu	36	1	152810616	152810616	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000748	exon5	c.C693T	p.R231R	.	.	.
DCST2	127579	hgsc.bcm.edu	36	1	153272581	153272581	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_144622	exon1	c.G221A	p.R74H	.	.	.
SMG5	23381	hgsc.bcm.edu	36	1	154487358	154487358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015327	exon21	c.C2882T	p.A961V	.	.	.
C1orf61	10485	hgsc.bcm.edu	36	1	154651071	154651071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006365	exon4	c.C170T	p.A57V	.	.	.
ARHGEF11	9826	hgsc.bcm.edu	36	1	155173893	155173893	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198236	exon39	c.C4212T	p.S1404S	.	.	.
NCSTN	23385	hgsc.bcm.edu	36	1	158586060	158586060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015331	exon4	c.G412A	p.V138I	.	.	.
EPHA2	1969	hgsc.bcm.edu	36	1	16334782	16334782	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004431	exon6	c.G1383A	p.P461P	.	.	.
RCSD1	92241	hgsc.bcm.edu	36	1	165930075	165930075	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_052862	exon5	c.G386A	p.G129D	.	.	.
ADCY10	55811	hgsc.bcm.edu	36	1	166081477	166081477	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001167749	exon18	c.C2496T	p.N832N	.	.	.
ATP1B1	481	hgsc.bcm.edu	36	1	167367210	167367210	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001677	exon6	c.C705T	p.S235S	.	.	.
GORAB	92344	hgsc.bcm.edu	36	1	168787864	168787864	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152281	exon5	c.T822C	p.T274T	.	.	.
PADI1	29943	hgsc.bcm.edu	36	1	17438803	17438803	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013358	exon14	c.A1570C	p.K524Q	.	.	.
PAX7	5081	hgsc.bcm.edu	36	1	18934919	18934919	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013945	exon8	c.G1356A	p.V452V	.	.	.
AKR7A2	8574	hgsc.bcm.edu	36	1	19505171	19505171	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003689	exon6	c.C846T	p.A282A	.	.	.
ADIPOR1	51094	hgsc.bcm.edu	36	1	201177951	201177951	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001127687	exon8	c.G824A	p.G275D	.	.	.
ADORA1	134	hgsc.bcm.edu	36	1	201401593	201401593	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001048230	exon3	c.G923A	p.R308H	.	.	.
CHIT1	1118	hgsc.bcm.edu	36	1	201461559	201461559	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003465	exon3	c.C118T	p.R40C	.	.	.
NUAK2	81788	hgsc.bcm.edu	36	1	203539698	203539698	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_030952	exon7	c.G1390A	p.E464K	.	.	.
ELK4	2005	hgsc.bcm.edu	36	1	203855705	203855705	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021795	exon3	c.G1092A	p.S364S	.	.	.
SLC45A3	85414	hgsc.bcm.edu	36	1	203895146	203895146	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033102	exon5	c.C1501T	p.L501L	.	.	.
HHAT	55733	hgsc.bcm.edu	36	1	208704617	208704617	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018194	exon8	c.G1002A	p.M334I	.	.	.
TMEM206	55248	hgsc.bcm.edu	36	1	210605297	210605297	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001198862	exon9	c.C1119A	p.G373G	.	.	.
KCNK2	3776	hgsc.bcm.edu	36	1	213474928	213474928	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001017424	exon7	c.G1086A	p.S362S	.	.	.
ESRRG	2104	hgsc.bcm.edu	36	1	214808058	214808058	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_206595	exon5	c.C526T	p.R176C	.	.	.
C1orf115	79762	hgsc.bcm.edu	36	1	218936607	218936607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024709	exon2	c.C340T	p.R114C	.	.	.
CDC42BPA	8476	hgsc.bcm.edu	36	1	225328681	225328681	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014826	exon17	c.G2245A	p.D749N	.	.	.
TRIM17	51127	hgsc.bcm.edu	36	1	226663505	226663505	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016102	exon6	c.G874T	p.G292C	.	.	.
RPS6KA1	6195	hgsc.bcm.edu	36	1	26754243	26754243	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001006665	exon9	c.G798A	p.T266T	.	.	.
AHDC1	27245	hgsc.bcm.edu	36	1	27750754	27750754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001029882	exon6	c.C460T	p.R154C	.	.	.
PTPRU	10076	hgsc.bcm.edu	36	1	29519879	29519879	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005704	exon27	c.C3813A	p.T1271T	.	.	.
PHC2	1912	hgsc.bcm.edu	36	1	33605322	33605322	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198040	exon6	c.C958T	p.H320Y	.	.	.
DFFB	1677	hgsc.bcm.edu	36	1	3772253	3772253	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004402	exon3	c.C259T	p.R87C	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39538505	39538505	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012090	exon23	c.G2533A	p.V845I	.	.	.
MACF1	23499	hgsc.bcm.edu	36	1	39597434	39597434	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012090	exon43	c.C5969A	p.P1990H	.	.	.
IPO13	9670	hgsc.bcm.edu	36	1	44199461	44199461	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014652	exon14	c.C2284T	p.P762S	.	.	.
ATP6V0B	533	hgsc.bcm.edu	36	1	44214867	44214867	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004047	exon5	c.T297G	p.A99A	.	.	.
MKNK1	8569	hgsc.bcm.edu	36	1	46818799	46818799	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198973	exon4	c.A224G	p.Y75C	.	.	.
SCP2	6342	hgsc.bcm.edu	36	1	53216614	53216614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001193617	exon8	c.G569T	p.S190I	.	.	.
FAM151A	338094	hgsc.bcm.edu	36	1	54848069	54848069	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_176782	exon8	c.C1218T	p.P406P	.	.	.
CACHD1	57685	hgsc.bcm.edu	36	1	64902866	64902866	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020925	exon15	c.G2039A	p.R680H	.	.	.
TNNI3K	51086	hgsc.bcm.edu	36	1	74591621	74591621	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001199327	exon12	c.A1319G	p.D440G	.	.	.
CAMTA1	23261	hgsc.bcm.edu	36	1	7646517	7646517	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015215	exon9	c.G1323C	p.K441N	.	.	.
IFI44	10561	hgsc.bcm.edu	36	1	78901137	78901137	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006417	exon8	c.C1274A	p.P425H	.	.	.
SLC2A7	155184	hgsc.bcm.edu	36	1	8992844	8992844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_207420	exon9	c.G1061A	p.G354D	.	.	.
ZNF644	84146	hgsc.bcm.edu	36	1	91178378	91178378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_201269	exon3	c.G1121A	p.S374N	.	.	.
CDC7	8317	hgsc.bcm.edu	36	1	91753956	91753956	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003503	exon10	c.C1115T	p.P372L	.	.	.
ABCA4	24	hgsc.bcm.edu	36	1	94263159	94263159	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000350	exon31	c.C4573A	p.L1525M	.	.	.
SIRPB1	10326	hgsc.bcm.edu	36	20	1500407	1500408	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006065	exon3	c.710_711insG	p.D237fs	.	.	.
CST9	128822	hgsc.bcm.edu	36	20	23532163	23532163	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001008693	exon2	c.G464T	p.R155M	.	.	.
C20orf39	79953	hgsc.bcm.edu	36	20	24472119	24472119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024893	exon2	c.C386T	p.P129L	.	.	.
ACSS1	84532	hgsc.bcm.edu	36	20	24959504	24959504	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032501	exon3	c.G522A	p.V174V	.	.	.
ProSAPiP1	9762	hgsc.bcm.edu	36	20	3094762	3094762	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014731	exon2	c.G704A	p.S235N	.	.	.
CDK5RAP1	51654	hgsc.bcm.edu	36	20	31430965	31430965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016082	exon8	c.G800A	p.R267H	.	.	.
FAM83C	128876	hgsc.bcm.edu	36	20	33338443	33338443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_178468	exon4	c.G1553A	p.R518Q	.	.	.
KIAA1219	57148	hgsc.bcm.edu	36	20	36550531	36550531	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020336	exon2	c.T42C	p.N14N	.	.	.
CDC25B	994	hgsc.bcm.edu	36	20	3733493	3733493	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004358	exon16	c.G1586T	p.R529L	.	.	.
GTSF1L	149699	hgsc.bcm.edu	36	20	41788483	41788483	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001008901	exon1	c.A266G	p.D89G	.	.	.
MMP9	4318	hgsc.bcm.edu	36	20	44071940	44071940	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004994	exon2	c.G167A	p.R56Q	.	.	.
SLC2A10	81031	hgsc.bcm.edu	36	20	44787726	44787726	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_030777	exon2	c.G644A	p.R215Q	.	.	.
ANKRD5	63926	hgsc.bcm.edu	36	20	9984251	9984251	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198798	exon10	c.T2274C	p.P758P	.	.	.
C21orf66	94104	hgsc.bcm.edu	36	21	33054147	33054147	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013329	exon6	c.T1005C	p.N335N	.	.	.
PRDM15	63977	hgsc.bcm.edu	36	21	42155169	42155169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022115	exon6	c.G636A	p.K212K	.	.	.
BACE2	25825	hgsc.bcm.edu	36	21	41569283	41569286	+	Frame_Shift_Del	DEL	TGCG	TGCG	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	TGCG	TGCG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138991	exon8	c.1269_1272del	p.423_424del	.	.	.
PPIL2	23759	hgsc.bcm.edu	36	22	20365646	20365646	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_148176	exon7	c.T354C	p.A118A	.	.	.
RTDR1	27156	hgsc.bcm.edu	36	22	21812535	21812535	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014433	exon2	c.C73A	p.H25N	.	.	.
BCR	613	hgsc.bcm.edu	36	22	21940614	21940614	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021574	exon5	c.A1772G	p.Y591C	.	.	.
SEC14L4	284904	hgsc.bcm.edu	36	22	29221942	29221942	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001161368	exon3	c.G147A	p.L49L	.	.	.
TCN2	6948	hgsc.bcm.edu	36	22	29343374	29343374	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001184726	exon7	c.C917T	p.T306M	.	.	.
L3MBTL2	83746	hgsc.bcm.edu	36	22	39952671	39952671	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031488	exon13	c.G1564A	p.A522T	.	.	.
PPARA	5465	hgsc.bcm.edu	36	22	44973150	44973150	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005036	exon4	c.C206T	p.T69M	.	.	.
PKDREJ	10343	hgsc.bcm.edu	36	22	45034767	45034767	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006071	exon1	c.C3117T	p.S1039S	.	.	.
TBC1D22A	25771	hgsc.bcm.edu	36	22	45886110	45886110	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014346	exon12	c.G1372A	p.A458T	.	.	.
SLC9A4	389015	hgsc.bcm.edu	36	2	102462129	102462129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001011552	exon2	c.G656A	p.R219H	.	.	.
NCK2	8440	hgsc.bcm.edu	36	2	105838162	105838162	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001004720	exon2	c.C211T	p.L71L	.	.	.
LPIN1	23175	hgsc.bcm.edu	36	2	11877138	11877138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145693	exon18	c.C2372T	p.T791I	.	.	.
MGAT5	4249	hgsc.bcm.edu	36	2	134818997	134818997	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002410	exon8	c.G1004A	p.R335Q	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	140930529	140930529	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018557	exon62	c.A9928G	p.N3310D	.	.	.
LRP1B	53353	hgsc.bcm.edu	36	2	141015855	141015855	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018557	exon44	c.A7350C	p.P2450P	.	.	.
ACVR2A	92	hgsc.bcm.edu	36	2	148400084	148400084	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001616	exon10	c.T1231G	p.Y411D	.	.	.
RIF1	55183	hgsc.bcm.edu	36	2	152034604	152034604	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001177664	exon33	c.A6997G	p.R2333G	.	.	.
UPP2	151531	hgsc.bcm.edu	36	2	158686345	158686345	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001135098	exon7	c.A804T	p.G268G	.	.	.
IFIH1	64135	hgsc.bcm.edu	36	2	162842350	162842350	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022168	exon10	c.C1865T	p.A622V	.	.	.
TTC21B	79809	hgsc.bcm.edu	36	2	166495003	166495003	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024753	exon9	c.G1012T	p.G338X	.	.	.
TTN	7273	hgsc.bcm.edu	36	2	179375174	179375174	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_133379	exon3	c.A231G	p.R77R	.	.	.
NT5C1B	93034	hgsc.bcm.edu	36	2	18608754	18608754	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033253	exon9	c.C1442T	p.A481V	.	.	.
HECW2	57520	hgsc.bcm.edu	36	2	196892802	196892802	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020760	exon9	c.G1057A	p.D353N	.	.	.
SF3B1	23451	hgsc.bcm.edu	36	2	197966114	197966114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012433	exon24	c.A3583G	p.M1195V	.	.	.
AOX1	316	hgsc.bcm.edu	36	2	201224088	201224088	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001159	exon26	c.A2994G	p.A998A	.	.	.
MAP2	4133	hgsc.bcm.edu	36	2	210283221	210283221	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031847	exon9	c.C1003A	p.Q335K	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21079394	21079394	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000384	exon29	c.T12405C	p.S4135S	.	.	.
APOB	338	hgsc.bcm.edu	36	2	21092835	21092835	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000384	exon21	c.G3313A	p.A1105T	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	211956621	211956621	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005235	exon28	c.G3891A	p.P1297P	.	.	.
ERBB4	2066	hgsc.bcm.edu	36	2	212196972	212196972	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005235	exon18	c.G2122A	p.A708T	.	.	.
TNS1	7145	hgsc.bcm.edu	36	2	218391445	218391445	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022648	exon24	c.C3543T	p.R1181R	.	.	.
CCDC108	255101	hgsc.bcm.edu	36	2	219583619	219583619	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_194302	exon26	c.C4201A	p.Q1401K	.	.	.
INHA	3623	hgsc.bcm.edu	36	2	220148305	220148305	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002191	exon2	c.T914G	p.L305R	.	.	.
NCL	4691	hgsc.bcm.edu	36	2	232028453	232028453	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005381	exon13	c.C1959T	p.F653F	.	.	.
CAPN10	11132	hgsc.bcm.edu	36	2	241182658	241182658	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_023085	exon6	c.G856A	p.A286T	.	.	.
BOK	666	hgsc.bcm.edu	36	2	242160410	242160410	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032515	exon5	c.G539A	p.S180N	.	.	.
MAPRE3	22924	hgsc.bcm.edu	36	2	27098710	27098710	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012326	exon2	c.A120G	p.S40S	.	.	.
LTBP1	4052	hgsc.bcm.edu	36	2	33265453	33265453	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000627	exon2	c.G250T	p.G84C	.	.	.
SOS1	6654	hgsc.bcm.edu	36	2	39066613	39066613	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005633	exon23	c.C3858T	p.S1286S	.	.	.
CEP68	23177	hgsc.bcm.edu	36	2	65153116	65153116	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015147	exon3	c.G1382A	p.R461Q	.	.	.
SLC4A5	57835	hgsc.bcm.edu	36	2	74327775	74327775	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021196	exon14	c.C1955T	p.A652V	.	.	.
WDR54	84058	hgsc.bcm.edu	36	2	74503566	74503566	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032118	exon3	c.A284C	p.Q95P	.	.	.
KDM3A	55818	hgsc.bcm.edu	36	2	86537133	86537133	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001146688	exon6	c.A614G	p.Q205R	.	.	.
CPSF3	51692	hgsc.bcm.edu	36	2	9488340	9488340	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016207	exon4	c.T221C	p.L74S	.	.	.
SENP7	57337	hgsc.bcm.edu	36	3	102549486	102549486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020654	exon13	c.C1757T	p.A586V	.	.	.
ADCY5	111	hgsc.bcm.edu	36	3	124526965	124526965	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_183357	exon8	c.G1982A	p.R661H	.	.	.
MYLK	4638	hgsc.bcm.edu	36	3	124858737	124858737	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_053025	exon24	c.G4214A	p.R1405H	.	.	.
OSBPL11	114885	hgsc.bcm.edu	36	3	126777837	126777837	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022776	exon5	c.G552A	p.S184S	 OSBPL11,breast,NS,Substitution - Missense,-1 	.	.
SLC41A3	54946	hgsc.bcm.edu	36	3	127214205	127214205	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001008485	exon9	c.C1048A	p.L350M	.	.	.
TMEM40	55287	hgsc.bcm.edu	36	3	12754660	12754660	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018306	exon7	c.A399G	p.R133R	.	.	.
MCM2	4171	hgsc.bcm.edu	36	3	128819599	128819599	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004526	exon12	c.C1998T	p.T666T	.	.	.
RUVBL1	8607	hgsc.bcm.edu	36	3	129306329	129306329	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003707	exon4	c.G490A	p.A164T	.	.	.
TMCC1	23023	hgsc.bcm.edu	36	3	131029766	131029766	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001017395	exon3	c.G146A	p.G49D	.	.	.
UBA5	79876	hgsc.bcm.edu	36	3	133867525	133867525	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198329	exon3	c.G47A	p.R16H	.	.	.
TRIM42	287015	hgsc.bcm.edu	36	3	141879791	141879791	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152616	exon1	c.A30G	p.P10P	.	.	.
COLQ	8292	hgsc.bcm.edu	36	3	15472522	15472522	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_080539	exon14	c.T981C	p.P327P	.	.	.
RSRC1	51319	hgsc.bcm.edu	36	3	159744727	159744727	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016625	exon10	c.A974G	p.Q325R	.	.	.
BCHE	590	hgsc.bcm.edu	36	3	167030796	167030796	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000055	exon2	c.A720G	p.G240G	.	.	.
SAMD7	344658	hgsc.bcm.edu	36	3	171127439	171127439	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182610	exon6	c.C695A	p.P232H	.	.	.
ECT2	1894	hgsc.bcm.edu	36	3	173974420	173974420	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018098	exon12	c.C1369T	p.R457C	.	.	.
ACTL6A	86	hgsc.bcm.edu	36	3	180787071	180787071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_178042	exon13	c.G1040T	p.R347L	.	.	.
MCCC1	56922	hgsc.bcm.edu	36	3	184272883	184272883	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020166	exon5	c.T456C	p.P152P	.	.	.
THPO	7066	hgsc.bcm.edu	36	3	185573127	185573127	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001177598	exon6	c.A913G	p.T305A	.	.	.
TRA2B	6434	hgsc.bcm.edu	36	3	187125947	187125947	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004593	exon3	c.G332T	p.R111L	.	.	.
OSTalpha	200931	hgsc.bcm.edu	36	3	197438964	197438964	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152672	exon4	c.G321A	p.W107X	.	.	.
PAK2	5062	hgsc.bcm.edu	36	3	198038575	198038575	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002577	exon14	c.A1462G	p.R488G	.	.	.
SENP5	205564	hgsc.bcm.edu	36	3	198097801	198097801	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152699	exon2	c.G1352T	p.S451I	.	.	.
SLC4A7	9497	hgsc.bcm.edu	36	3	27414761	27414761	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003615	exon17	c.A2488G	p.I830V	.	.	.
ITGA9	3680	hgsc.bcm.edu	36	3	37758235	37758235	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002207	exon21	c.G2245T	p.E749X	.	.	.
GORASP1	64689	hgsc.bcm.edu	36	3	39119222	39119222	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031899	exon3	c.T299C	p.V100A	.	.	.
SETD2	29072	hgsc.bcm.edu	36	3	47100239	47100239	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014159	exon12	c.T6035G	p.L2012R	.	.	.
KLHL18	23276	hgsc.bcm.edu	36	3	47339091	47339091	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_025010	exon3	c.A290G	p.Y97C	.	.	.
TREX1	11277	hgsc.bcm.edu	36	3	48483697	48483697	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016381	exon1	c.G804T	p.Q268H	.	.	.
COL7A1	1294	hgsc.bcm.edu	36	3	48580032	48580032	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000094	exon108	c.G8025T	p.K2675N	.	.	.
CELSR3	1951	hgsc.bcm.edu	36	3	48672686	48672686	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001407	exon1	c.G2386A	p.G796S	.	.	.
NICN1	84276	hgsc.bcm.edu	36	3	49437808	49437808	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032316	exon4	c.G491A	p.R164H	.	.	.
GNAT1	2779	hgsc.bcm.edu	36	3	50207227	50207227	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000172	exon8	c.C888T	p.G296G	.	.	.
GNL3	26354	hgsc.bcm.edu	36	3	52702025	52702025	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_206825	exon10	c.C931T	p.R311X	.	.	.
ADAMTS9	56999	hgsc.bcm.edu	36	3	64511736	64511736	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182920	exon31	c.G4741A	p.V1581M	.	.	.
TBCKL	93627	hgsc.bcm.edu	36	4	107373595	107373595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001163437	exon17	c.C1471T	p.R491C	.	.	.
AGXT2L1	64850	hgsc.bcm.edu	36	4	109888631	109888631	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001146627	exon8	c.A887G	p.H296R	.	.	.
ENPEP	2028	hgsc.bcm.edu	36	4	111688859	111688859	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001977	exon14	c.G2079A	p.Q693Q	.	.	.
SPATA5	166378	hgsc.bcm.edu	36	4	124074803	124074803	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_145207	exon5	c.T607C	p.L203L	.	.	.
PCDH10	57575	hgsc.bcm.edu	36	4	134303860	134303860	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032961	exon4	c.C3076T	p.R1026X	.	.	.
UCP1	7350	hgsc.bcm.edu	36	4	141708434	141708434	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021833	exon2	c.A274G	p.R92G	.	.	.
USP38	84640	hgsc.bcm.edu	36	4	144354223	144354223	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_032557	exon9	c.A1644G	p.S548S	.	.	.
NR3C2	4306	hgsc.bcm.edu	36	4	149295364	149295364	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000901	exon5	c.C2153T	p.S718L	.	.	.
FBXW7	55294	hgsc.bcm.edu	36	4	153466817	153466817	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018315	exon9	c.C1195T	p.R399X	 FBXW7,haematopoietic_and_lymphoid_tissue,NS,Substitution - Missense,+1 	.	.
ACCN5	51802	hgsc.bcm.edu	36	4	156977377	156977377	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017419	exon8	c.G1149A	p.P383P	.	.	.
TMEM144	55314	hgsc.bcm.edu	36	4	159359973	159359973	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018342	exon6	c.G394A	p.A132T	.	.	.
FSTL5	56884	hgsc.bcm.edu	36	4	162599914	162599914	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020116	exon14	c.G1616A	p.S539N	.	.	.
SLBP	7884	hgsc.bcm.edu	36	4	1666323	1666323	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006527	exon7	c.C672A	p.P224P	.	.	.
SLC25A4	291	hgsc.bcm.edu	36	4	186305071	186305071	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001151	exon4	c.C849T	p.G283G	.	.	.
CYP4V2	285440	hgsc.bcm.edu	36	4	187359430	187359430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_207352	exon7	c.C927T	p.D309D	.	.	.
F11	2160	hgsc.bcm.edu	36	4	187438229	187438229	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000128	exon8	c.T825G	p.L275L	.	.	.
SLC34A2	10568	hgsc.bcm.edu	36	4	25286858	25286858	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001177999	exon13	c.G1459T	p.A487S	.	.	.
ATP8A1	10396	hgsc.bcm.edu	36	4	42152181	42152181	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006095	exon29	c.A2707G	p.M903V	.	.	.
DCUN1D4	23142	hgsc.bcm.edu	36	4	52452702	52452702	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001040402	exon7	c.C434T	p.A145V	.	.	.
GSX2	170825	hgsc.bcm.edu	36	4	54662692	54662692	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_133267	exon2	c.G761A	p.R254Q	.	.	.
PPAT	5471	hgsc.bcm.edu	36	4	56967419	56967419	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002703	exon3	c.A401G	p.K134R	.	.	.
EVC	2121	hgsc.bcm.edu	36	4	5785986	5785986	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153717	exon5	c.G625A	p.V209I	.	.	.
PPP2R2C	5522	hgsc.bcm.edu	36	4	6433706	6433706	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020416	exon2	c.C87T	p.T29T	.	.	.
SCARB2	950	hgsc.bcm.edu	36	4	77321192	77321192	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005506	exon3	c.G362A	p.R121Q	.	.	.
NUDT9	53343	hgsc.bcm.edu	36	4	88578523	88578523	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198038	exon3	c.T268C	p.Y90H	.	.	.
ENPEP	2028	hgsc.bcm.edu	36	4	111617032	111617033	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	GA	GA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001977	exon1	c.13_14del	p.5_5del	.	.	.
RGS12	6002	hgsc.bcm.edu	36	4	3399651	3399652	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002926	exon15	c.3368_3369del	p.1123_1123del	.	.	.
EREG	2069	hgsc.bcm.edu	36	4	75464093	75464094	+	Frame_Shift_Del	DEL	CA	CA	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	CA	CA	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001432	exon2	c.132_133del	p.44_45del	.	.	.
MCC	4163	hgsc.bcm.edu	36	5	112431743	112431743	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001085377	exon13	c.G1962A	p.A654A	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13829686	13829686	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001369	exon55	c.C9235T	p.R3079X	.	.	.
APBB3	10307	hgsc.bcm.edu	36	5	139920462	139920462	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_133174	exon10	c.G972T	p.W324C	.	.	.
HARS2	23438	hgsc.bcm.edu	36	5	140055324	140055324	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012208	exon5	c.A447G	p.K149K	.	.	.
PCDHB2	56133	hgsc.bcm.edu	36	5	140454729	140454729	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018936	exon1	c.G171T	p.E57D	.	.	.
PCDHB3	56132	hgsc.bcm.edu	36	5	140460830	140460830	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018937	exon1	c.T413A	p.M138K	.	.	.
PCDHB3	56132	hgsc.bcm.edu	36	5	140460832	140460832	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018937	exon1	c.C415A	p.H139N	.	.	.
PCDHB16	57717	hgsc.bcm.edu	36	5	140542982	140542982	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020957	exon1	c.C664T	p.R222X	.	.	.
NR3C1	2908	hgsc.bcm.edu	36	5	142641713	142641713	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001018074	exon9	c.C2268A	p.I756I	.	.	.
PPP2R2B	5521	hgsc.bcm.edu	36	5	146010376	146010376	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001127381	exon6	c.C552T	p.D184D	.	.	.
JAKMIP2	9832	hgsc.bcm.edu	36	5	147020987	147020987	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014790	exon3	c.A344G	p.K115R	.	.	.
G3BP1	10146	hgsc.bcm.edu	36	5	151155278	151155278	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005754	exon6	c.C488A	p.P163H	.	.	.
TIMD4	91937	hgsc.bcm.edu	36	5	156281716	156281716	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138379	exon7	c.C984T	p.F328F	.	.	.
ITK	3702	hgsc.bcm.edu	36	5	156605371	156605371	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005546	exon14	c.A1507G	p.M503V	.	.	.
PANK3	79646	hgsc.bcm.edu	36	5	167918700	167918700	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024594	exon6	c.T977C	p.V326A	.	.	.
SLIT3	6586	hgsc.bcm.edu	36	5	168242878	168242878	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003062	exon5	c.C455T	p.A152V	.	.	.
BOD1	91272	hgsc.bcm.edu	36	5	172968876	172968876	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138369	exon3	c.C530A	p.P177H	.	.	.
SFXN1	94081	hgsc.bcm.edu	36	5	174871078	174871078	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_022754	exon5	c.C453T	p.Y151Y	.	.	.
FAF2	23197	hgsc.bcm.edu	36	5	175859680	175859680	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014613	exon10	c.G1082A	p.S361N	.	.	.
CDH18	1016	hgsc.bcm.edu	36	5	19579812	19579812	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004934	exon9	c.G1313C	p.G438A	.	.	.
DNAJC21	134218	hgsc.bcm.edu	36	5	34969754	34969754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_194283	exon2	c.C175T	p.P59S	.	.	.
IL7R	3575	hgsc.bcm.edu	36	5	35910360	35910360	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002185	exon6	c.C759T	p.V253V	.	.	.
PDCD6	10016	hgsc.bcm.edu	36	5	367554	367554	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013232	exon6	c.G500A	p.R167H	.	.	.
NIPBL	25836	hgsc.bcm.edu	36	5	37080285	37080285	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015384	exon35	c.A6188G	p.E2063G	.	.	.
GDNF	2668	hgsc.bcm.edu	36	5	37870605	37870605	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001190468	exon2	c.G102A	p.A34A	.	.	.
HSPB3	8988	hgsc.bcm.edu	36	5	53787529	53787529	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006308	exon1	c.G153A	p.A51A	.	.	.
DHX29	54505	hgsc.bcm.edu	36	5	54606543	54606543	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_019030	exon15	c.A2480G	p.Q827R	.	.	.
MIER3	166968	hgsc.bcm.edu	36	5	56264889	56264889	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152622	exon8	c.G689A	p.G230D	.	.	.
ELOVL7	79993	hgsc.bcm.edu	36	5	60086371	60086371	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024930	exon9	c.T683C	p.M228T	.	.	.
CD180	4064	hgsc.bcm.edu	36	5	66515078	66515078	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005582	exon3	c.T1349C	p.L450P	.	.	.
TMEM174	134288	hgsc.bcm.edu	36	5	72505111	72505111	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153217	exon1	c.G285A	p.M95I	.	.	.
ARSB	411	hgsc.bcm.edu	36	5	78112095	78112095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000046	exon8	c.G1483A	p.V495I	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82868727	82868727	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001164097	exon7	c.A1188G	p.L396L	.	.	.
VCAN	1462	hgsc.bcm.edu	36	5	82872021	82872021	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001164097	exon7	c.A4482G	p.G1494G	.	.	.
NR2F1	7025	hgsc.bcm.edu	36	5	92955244	92955244	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005654	exon3	c.C1212T	p.R404R	.	.	.
MAN1A1	4121	hgsc.bcm.edu	36	6	119556708	119556708	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005907	exon9	c.T1259C	p.L420P	.	.	.
GJA1	2697	hgsc.bcm.edu	36	6	121810265	121810265	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000165	exon2	c.C573A	p.P191P	.	.	.
ARHGAP18	93663	hgsc.bcm.edu	36	6	129963490	129963490	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033515	exon11	c.T1562G	p.L521R	.	.	.
SASH1	23328	hgsc.bcm.edu	36	6	148895707	148895707	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015278	exon14	c.C1646T	p.P549L	.	.	.
AKAP12	9590	hgsc.bcm.edu	36	6	151713907	151713907	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005100	exon4	c.C2688T	p.V896V	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152793330	152793330	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033071	exon35	c.T4690C	p.F1564L	.	.	.
IPCEF1	26034	hgsc.bcm.edu	36	6	154562537	154562537	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001130700	exon10	c.T867C	p.L289L	.	.	.
PNLDC1	154197	hgsc.bcm.edu	36	6	160160046	160160046	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_173516	exon17	c.G1303A	p.E435K	.	.	.
GMDS	2762	hgsc.bcm.edu	36	6	1906148	1906148	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001500	exon5	c.C397T	p.L133L	.	.	.
HIST1H1B	3009	hgsc.bcm.edu	36	6	27942838	27942838	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005322	exon1	c.A449G	p.K150R	.	.	.
MRPS18B	28973	hgsc.bcm.edu	36	6	30701293	30701293	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014046	exon7	c.C517T	p.R173W	.	.	.
HSPA1L	3305	hgsc.bcm.edu	36	6	31886096	31886096	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005527	exon2	c.G1633T	p.E545X	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33738687	33738687	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002224	exon9	c.C880T	p.R294C	.	.	.
ITPR3	3710	hgsc.bcm.edu	36	6	33758365	33758365	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002224	exon34	c.C4563T	p.S1521S	.	.	.
GRM4	2914	hgsc.bcm.edu	36	6	34208849	34208849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000841	exon1	c.C403T	p.R135C	.	.	.
ANKS1A	23294	hgsc.bcm.edu	36	6	35060838	35060838	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015245	exon8	c.T1014C	p.G338G	.	.	.
CCND3	896	hgsc.bcm.edu	36	6	42016168	42016168	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001136017	exon2	c.C89A	p.S30Y	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43124105	43124105	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014780	exon8	c.T2006C	p.L669P	.	.	.
MRPL2	51069	hgsc.bcm.edu	36	6	43131805	43131805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015950	exon4	c.G512A	p.R171Q	.	.	.
SLC22A7	10864	hgsc.bcm.edu	36	6	43375763	43375763	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006672	exon4	c.C802A	p.P268T	.	.	.
POLH	5429	hgsc.bcm.edu	36	6	43673443	43673443	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006502	exon5	c.C523T	p.L175F	.	.	.
CD2AP	23607	hgsc.bcm.edu	36	6	47657719	47657719	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012120	exon11	c.C1067A	p.A356D	.	.	.
CRISP2	7180	hgsc.bcm.edu	36	6	49784854	49784854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003296	exon4	c.G15A	p.P5P	.	.	.
DSP	1832	hgsc.bcm.edu	36	6	7531103	7531103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001008844	exon24	c.G6812A	p.G2271E	.	.	.
IMPG1	3617	hgsc.bcm.edu	36	6	76717162	76717162	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001563	exon13	c.C1661T	p.S554L	.	.	.
BMP6	654	hgsc.bcm.edu	36	6	7790463	7790463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001718	exon2	c.G756A	p.T252T	.	.	.
CCDC28A	25901	hgsc.bcm.edu	36	6	139139023	139139023	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015439	exon2	c.343delA	p.K115fs	.	.	.
ARID1B	57492	hgsc.bcm.edu	36	6	157563909	157563916	+	Frame_Shift_Del	DEL	GACGATAT	GACGATAT	-	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	GACGATAT	GACGATAT	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017519	exon17	c.4450_4457del	p.1484_1486del	.	.	.
MUC17	140453	hgsc.bcm.edu	36	7	100472615	100472615	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001040105	exon3	c.C11198A	p.S3733X	.	.	.
ORC5L	5001	hgsc.bcm.edu	36	7	103611689	103611689	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_181747	exon8	c.G762A	p.W254X	.	.	.
SRPK2	6733	hgsc.bcm.edu	36	7	104570880	104570880	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_182691	exon9	c.A914G	p.N305S	.	.	.
LAMB1	3912	hgsc.bcm.edu	36	7	107403378	107403378	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002291	exon10	c.T1181C	p.F394S	.	.	.
GPER	2852	hgsc.bcm.edu	36	7	1098255	1098255	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001505	exon2	c.G365A	p.R122Q	.	.	.
CAPZA2	830	hgsc.bcm.edu	36	7	116345132	116345132	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006136	exon10	c.T836G	p.I279S	.	.	.
AHCYL2	23382	hgsc.bcm.edu	36	7	128824338	128824338	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015328	exon5	c.C760T	p.R254X	.	.	.
NRF1	4899	hgsc.bcm.edu	36	7	129154411	129154411	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005011	exon10	c.G1318T	p.G440X	.	.	.
KLRG2	346689	hgsc.bcm.edu	36	7	138814967	138814967	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_198508	exon3	c.C951T	p.S317S	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
TAS2R5	54429	hgsc.bcm.edu	36	7	141136794	141136794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_018980	exon1	c.G164A	p.R55Q	.	.	.
FAM131B	9715	hgsc.bcm.edu	36	7	142766232	142766232	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001031690	exon5	c.A276G	p.S92S	.	.	.
CUL1	8454	hgsc.bcm.edu	36	7	148115063	148115063	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003592	exon13	c.A1397C	p.Y466S	.	.	.
CUL1	8454	hgsc.bcm.edu	36	7	148125848	148125848	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003592	exon18	c.G1911A	p.A637A	.	.	.
MLL3	58508	hgsc.bcm.edu	36	7	151490502	151490502	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_170606	exon43	c.C11093T	p.T3698M	 MLL3,large_intestine,colon,Substitution - Missense,-1 	.	.
NOM1	64434	hgsc.bcm.edu	36	7	156451807	156451807	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138400	exon8	c.T2116C	p.F706L	.	.	.
NOM1	64434	hgsc.bcm.edu	36	7	156452431	156452431	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138400	exon9	c.A2182G	p.S728G	.	.	.
FAM62B	57488	hgsc.bcm.edu	36	7	158229082	158229082	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020728	exon16	c.C1774A	p.L592I	.	.	.
GPNMB	10457	hgsc.bcm.edu	36	7	23276264	23276264	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001005340	exon9	c.G1410A	p.L470L	.	.	.
NPY	4852	hgsc.bcm.edu	36	7	24291509	24291509	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000905	exon2	c.C125T	p.A42V	.	.	.
C7orf16	10842	hgsc.bcm.edu	36	7	31713407	31713407	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006658	exon5	c.C453A	p.D151E	.	.	.
SDK1	221935	hgsc.bcm.edu	36	7	4248071	4248071	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_152744	exon43	c.G6251T	p.R2084M	.	.	.
YKT6	10652	hgsc.bcm.edu	36	7	44213532	44213532	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006555	exon4	c.G309A	p.K103K	.	.	.
PKD1L1	168507	hgsc.bcm.edu	36	7	47806916	47806916	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_138295	exon54	c.A8049G	p.T2683T	.	.	.
PRKAR1B	5575	hgsc.bcm.edu	36	7	686730	686730	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001164759	exon3	c.T337C	p.Y113H	.	.	.
CLIP2	7461	hgsc.bcm.edu	36	7	73390856	73390856	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003388	exon3	c.C264T	p.N88N	.	.	.
SEMA3E	9723	hgsc.bcm.edu	36	7	82867422	82867422	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_012431	exon11	c.T1224C	p.H408H	.	.	.
SRI	6717	hgsc.bcm.edu	36	7	87676630	87676630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003130	exon6	c.C471T	p.D157D	.	.	.
KRIT1	889	hgsc.bcm.edu	36	7	91693798	91693798	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_194455	exon11	c.T1124C	p.L375P	.	.	.
COL1A2	1278	hgsc.bcm.edu	36	7	93887842	93887842	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000089	exon37	c.G2241T	p.K747N	.	.	.
TMEM130	222865	hgsc.bcm.edu	36	7	98284174	98284174	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001134451	exon6	c.C781T	p.R261W	.	.	.
GAL3ST4	79690	hgsc.bcm.edu	36	7	99596111	99596111	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024637	exon4	c.C837T	p.F279F	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121378979	121378979	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_021110	exon35	c.A4285G	p.T1429A	.	.	.
ZHX2	22882	hgsc.bcm.edu	36	8	124035299	124035299	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014943	exon3	c.G2368A	p.V790I	.	.	.
MTSS1	9788	hgsc.bcm.edu	36	8	125644222	125644222	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014751	exon10	c.G1017A	p.P339P	.	.	.
KIAA0196	9897	hgsc.bcm.edu	36	8	126120308	126120308	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014846	exon25	c.A3030G	p.L1010L	.	.	.
ADCY8	114	hgsc.bcm.edu	36	8	131895555	131895555	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001115	exon14	c.G2855A	p.R952Q	.	.	.
WISP1	8840	hgsc.bcm.edu	36	8	134294401	134294401	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_080838	exon2	c.G182A	p.R61H	.	.	.
CNOT7	29883	hgsc.bcm.edu	36	8	17139106	17139106	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_013354	exon4	c.G459A	p.W153X	.	.	.
ARHGEF10	9639	hgsc.bcm.edu	36	8	1795750	1795750	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014629	exon4	c.C474T	p.D158D	.	.	.
SLC39A14	23516	hgsc.bcm.edu	36	8	22329687	22329687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001135153	exon7	c.G1096T	p.G366C	.	.	.
DOCK5	80005	hgsc.bcm.edu	36	8	25209976	25209976	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024940	exon7	c.T501C	p.D167D	.	.	.
EXTL3	2137	hgsc.bcm.edu	36	8	28656607	28656607	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001440	exon6	c.T2507C	p.M836T	.	.	.
ANK1	286	hgsc.bcm.edu	36	8	41685599	41685599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020475	exon17	c.G1852A	p.A618T	.	.	.
ADHFE1	137872	hgsc.bcm.edu	36	8	67531929	67531929	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_144650	exon12	c.G1136A	p.R379Q	.	.	.
PMP2	5375	hgsc.bcm.edu	36	8	82522136	82522136	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002677	exon1	c.G41A	p.S14N	.	.	.
SDC2	6383	hgsc.bcm.edu	36	8	97690868	97690868	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002998	exon5	c.G522T	p.K174N	.	.	.
IKBKAP	8518	hgsc.bcm.edu	36	9	110714419	110714419	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003640	exon11	c.C1135T	p.R379W	.	.	.
TNC	3371	hgsc.bcm.edu	36	9	116889267	116889267	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_002160	exon3	c.C564T	p.P188P	.	.	.
DENND1A	57706	hgsc.bcm.edu	36	9	125559885	125559885	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_024820	exon5	c.G220A	p.V74M	.	.	.
NR6A1	2649	hgsc.bcm.edu	36	9	126328914	126328914	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_033334	exon8	c.A1166G	p.Y389C	.	.	.
PIP5KL1	138429	hgsc.bcm.edu	36	9	129724154	129724154	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_173492	exon5	c.C369A	p.P123P	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130383884	130383884	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001195532	exon12	c.G1464A	p.A488A	.	.	.
SPTAN1	6709	hgsc.bcm.edu	36	9	130428559	130428559	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001195532	exon47	c.G6273T	p.E2091D	.	.	.
DOLK	22845	hgsc.bcm.edu	36	9	130748290	130748290	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014908	exon1	c.T1114G	p.F372V	.	.	.
COL5A1	1289	hgsc.bcm.edu	36	9	136811785	136811785	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_000093	exon28	c.G2402A	p.R801H	.	.	.
TTC39B	158219	hgsc.bcm.edu	36	9	15178020	15178020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001168340	exon13	c.G1305A	p.M435I	.	.	.
ADFP	123	hgsc.bcm.edu	36	9	19113618	19113618	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001122	exon4	c.A254G	p.K85R	.	.	.
PLAA	9373	hgsc.bcm.edu	36	9	26897897	26897897	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001031689	exon13	c.G1757C	p.S586T	.	.	.
TAF1L	138474	hgsc.bcm.edu	36	9	32623737	32623737	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153809	exon1	c.C1841A	p.A614D	.	.	.
C9orf23	138716	hgsc.bcm.edu	36	9	34601147	34601147	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_148178	exon2	c.C147T	p.G49G	.	.	.
FRMPD1	22844	hgsc.bcm.edu	36	9	37735558	37735558	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014907	exon16	c.C3529T	p.P1177S	.	.	.
KDM4C	23081	hgsc.bcm.edu	36	9	6980453	6980453	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001146696	exon12	c.G1781A	p.R594H	.	.	.
DRP2	1821	hgsc.bcm.edu	36	X	100392083	100392083	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001939	exon15	c.T1556C	p.V519A	.	.	.
ARMCX5	64860	hgsc.bcm.edu	36	X	101744404	101744404	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001168485	exon5	c.G679A	p.A227T	.	.	.
IRS4	8471	hgsc.bcm.edu	36	X	107866005	107866005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003604	exon1	c.G226A	p.G76R	.	.	.
IRS4	8471	hgsc.bcm.edu	36	X	107866009	107866009	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_003604	exon1	c.C222T	p.P74P	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109580580	109580580	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_020769	exon3	c.G79T	p.A27S	.	.	.
FRMPD4	9758	hgsc.bcm.edu	36	X	12645790	12645790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014728	exon16	c.C2924A	p.P975Q	.	.	.
TLR7	51284	hgsc.bcm.edu	36	X	12816024	12816024	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016562	exon3	c.A2476G	p.I826V	.	.	.
USP26	83844	hgsc.bcm.edu	36	X	131987333	131987333	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031907	exon1	c.G2582A	p.R861Q	.	.	.
GPR112	139378	hgsc.bcm.edu	36	X	135322135	135322135	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_153834	exon24	c.G8981A	p.R2994Q	.	.	.
EGFL6	25975	hgsc.bcm.edu	36	X	13536478	13536478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001167890	exon7	c.G770A	p.R257Q	.	.	.
GPR101	83550	hgsc.bcm.edu	36	X	135941063	135941063	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_054021	exon1	c.G437A	p.R146H	.	.	.
MAGEC1	9947	hgsc.bcm.edu	36	X	140822772	140822772	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_005462	exon4	c.G1916A	p.S639N	.	.	.
PNMA5	114824	hgsc.bcm.edu	36	X	151910232	151910232	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001103150	exon2	c.G567A	p.W189X	.	.	.
S100G	795	hgsc.bcm.edu	36	X	16579120	16579120	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004057	exon2	c.C70A	p.P24T	.	.	.
NHS	4810	hgsc.bcm.edu	36	X	17660363	17660363	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001136024	exon9	c.G4283A	p.R1428Q	.	.	.
DMD	1756	hgsc.bcm.edu	36	X	32339882	32339882	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004011	exon2	c.T118G	p.L40V	.	.	.
SYN1	6853	hgsc.bcm.edu	36	X	47320510	47320510	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_133499	exon9	c.G1122A	p.A374A	.	.	.
HDAC6	10013	hgsc.bcm.edu	36	X	48563543	48563543	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_006044	exon23	c.T2274C	p.G758G	.	.	.
KDM5C	8242	hgsc.bcm.edu	36	X	53256406	53256406	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_004187	exon12	c.C1661A	p.P554H	.	.	.
RIBC1	158787	hgsc.bcm.edu	36	X	53474102	53474102	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001031745	exon7	c.C697T	p.R233C	.	.	.
TRO	7216	hgsc.bcm.edu	36	X	54969639	54969639	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_016157	exon8	c.C1649G	p.A550G	.	.	.
APEX2	27301	hgsc.bcm.edu	36	X	55050457	55050457	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_014481	exon6	c.A1421G	p.E474G	.	.	.
LAS1L	81887	hgsc.bcm.edu	36	X	64649453	64649453	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_031206	exon14	c.G2132A	p.S711N	.	.	.
GDPD2	54857	hgsc.bcm.edu	36	X	69563913	69563913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001171193	exon9	c.C574T	p.H192Y	.	.	.
ERCC6L	54821	hgsc.bcm.edu	36	X	71344149	71344149	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_017669	exon2	c.G1193A	p.R398H	.	.	.
TAF9B	51616	hgsc.bcm.edu	36	X	77273812	77273812	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015975	exon7	c.A707C	p.N236T	.	.	.
TAF9B	51616	hgsc.bcm.edu	36	X	77281063	77281063	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_015975	exon2	c.C66A	p.I22I	.	.	.
CPXCR1	53336	hgsc.bcm.edu	36	X	87895106	87895106	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-2672-01A-01W-0833-10	TCGA-A6-2672-10A-01W-0833-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	0d5cff3f-6c2e-47c3-9686-fadceedc6ecc	bbf1144f-9c82-490f-9037-26d8442f62f1	NM_001184771	exon3	c.C35T	p.A12V	.	.	.
