Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
CARD11	84433	hgsc.bcm.edu	36	7	2946085	2946085	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KDELR2	11014	hgsc.bcm.edu	36	7	6469180	6469180	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DGKB	1607	hgsc.bcm.edu	36	7	14627565	14627565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PLEKHA8	84725	hgsc.bcm.edu	36	7	30060900	30060900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
POU6F2	11281	hgsc.bcm.edu	36	7	39213563	39213563	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SAMD9	54809	hgsc.bcm.edu	36	7	92572369	92572369	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PPP1R9A	55607	hgsc.bcm.edu	36	7	94665646	94665646	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
VSTM2L	128434	hgsc.bcm.edu	36	20	36005993	36005993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
EMILIN3	90187	hgsc.bcm.edu	36	20	39424192	39424192	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SRSF6	0	hgsc.bcm.edu	36	20	41522138	41522138	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
WFDC5	149708	hgsc.bcm.edu	36	20	43172777	43172777	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
NCOA3	8202	hgsc.bcm.edu	36	20	45713264	45713264	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
COL20A1	57642	hgsc.bcm.edu	36	20	61421330	61421330	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SERPIND1	3053	hgsc.bcm.edu	36	22	19470317	19470317	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CHEK2	11200	hgsc.bcm.edu	36	22	27421840	27421840	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CHEK2	11200	hgsc.bcm.edu	36	22	27421841	27421841	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DNAJB7	150353	hgsc.bcm.edu	36	22	39587444	39587444	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TCF20	6942	hgsc.bcm.edu	36	22	40937614	40937614	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KCNK13	56659	hgsc.bcm.edu	36	14	89720617	89720617	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
THEG	51298	hgsc.bcm.edu	36	19	318119	318119	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GIPC3	126326	hgsc.bcm.edu	36	19	3537991	3537991	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
COL5A3	50509	hgsc.bcm.edu	36	19	9940084	9940084	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZNF442	79973	hgsc.bcm.edu	36	19	12322943	12322943	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZNF431	170959	hgsc.bcm.edu	36	19	21157555	21157555	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TSHZ3	57616	hgsc.bcm.edu	36	19	36460095	36460095	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
MLL4	9757	hgsc.bcm.edu	36	19	40903582	40903582	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RYR1	6261	hgsc.bcm.edu	36	19	43707876	43707876	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZNF227	7770	hgsc.bcm.edu	36	19	49430809	49430809	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZNF497	162968	hgsc.bcm.edu	36	19	63560181	63560181	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ADAM32	203102	hgsc.bcm.edu	36	8	39187847	39187847	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TGS1	286826	hgsc.bcm.edu	36	8	56886026	56886026	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TMEM67	91147	hgsc.bcm.edu	36	8	94878858	94878858	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
EXT1	2131	hgsc.bcm.edu	36	8	118899875	118899875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PRDM16	63976	hgsc.bcm.edu	36	1	3337380	3337380	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
MACF1	23499	hgsc.bcm.edu	36	1	39676149	39676149	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
NRAS	4893	hgsc.bcm.edu	36	1	115060271	115060271	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
LCE3E	353145	hgsc.bcm.edu	36	1	150805072	150805072	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PEAR1	375033	hgsc.bcm.edu	36	1	155145155	155145155	+	Silent	SNP	T	T	C	rs11264580	by2Hit2Allele;byCluster	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OR10J3	441911	hgsc.bcm.edu	36	1	157550102	157550102	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ILDR2	387597	hgsc.bcm.edu	36	1	165158508	165158508	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
B3GALT2	8707	hgsc.bcm.edu	36	1	191416312	191416312	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CRB1	23418	hgsc.bcm.edu	36	1	195580082	195580082	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CENPF	1063	hgsc.bcm.edu	36	1	212886135	212886135	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
IARS2	55699	hgsc.bcm.edu	36	1	218354348	218354348	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TP53BP2	7159	hgsc.bcm.edu	36	1	222052710	222052710	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FMN2	56776	hgsc.bcm.edu	36	1	238437951	238437951	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OR51T1	401665	hgsc.bcm.edu	36	11	4860452	4860452	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TPP1	65057	hgsc.bcm.edu	36	11	6592787	6592787	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DCDC1	341019	hgsc.bcm.edu	36	11	31283852	31283852	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OR4B1	119765	hgsc.bcm.edu	36	11	48195693	48195693	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OR5T2	219464	hgsc.bcm.edu	36	11	55756756	55756756	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OR5M8	219484	hgsc.bcm.edu	36	11	56014615	56014615	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ANO1	55107	hgsc.bcm.edu	36	11	69649860	69649860	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DIXDC1	85458	hgsc.bcm.edu	36	11	111361234	111361234	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SLC37A4	2542	hgsc.bcm.edu	36	11	118404266	118404266	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GCM2	9247	hgsc.bcm.edu	36	6	10984676	10984676	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
C6orf26	401251	hgsc.bcm.edu	36	6	31840279	31840279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TNXB	7148	hgsc.bcm.edu	36	6	32132446	32132446	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DST	667	hgsc.bcm.edu	36	6	56584305	56584305	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
BAI3	577	hgsc.bcm.edu	36	6	69405610	69405610	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SIM1	6492	hgsc.bcm.edu	36	6	100945636	100945636	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
THBS2	7058	hgsc.bcm.edu	36	6	169363451	169363451	+	Silent	SNP	T	T	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TP53	7157	hgsc.bcm.edu	36	17	7519186	7519186	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CNTROB	116840	hgsc.bcm.edu	36	17	7777321	7777321	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
MAP2K4	6416	hgsc.bcm.edu	36	17	11973267	11973267	+	Silent	SNP	G	G	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RAB11FIP4	84440	hgsc.bcm.edu	36	17	26875083	26875083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
AMAC1	146861	hgsc.bcm.edu	36	17	30545304	30545304	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SLFN13	146857	hgsc.bcm.edu	36	17	30792845	30792845	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
HNF1B	6928	hgsc.bcm.edu	36	17	33167738	33167738	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DBF4B	80174	hgsc.bcm.edu	36	17	40155891	40155891	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
USP25	29761	hgsc.bcm.edu	36	21	16164304	16164304	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GDE1	51573	hgsc.bcm.edu	36	16	19423782	19423782	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FAM57B	83723	hgsc.bcm.edu	36	16	29944118	29944118	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ABCC12	94160	hgsc.bcm.edu	36	16	46698735	46698735	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RPL13	28998	hgsc.bcm.edu	36	16	88154961	88154961	+	Silent	SNP	T	T	G	rs2280370	byCluster;byFrequency	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SMAD4	4089	hgsc.bcm.edu	36	18	46829669	46829669	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
NEDD4L	23327	hgsc.bcm.edu	36	18	53984060	53984060	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ITPR1	3708	hgsc.bcm.edu	36	3	4687594	4687594	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZCWPW2	152098	hgsc.bcm.edu	36	3	28429701	28429701	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
STAC	6769	hgsc.bcm.edu	36	3	36460083	36460083	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CELSR3	1951	hgsc.bcm.edu	36	3	48655247	48655247	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DNAH12	201625	hgsc.bcm.edu	36	3	57484582	57484582	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CCDC54	84692	hgsc.bcm.edu	36	3	108579577	108579577	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ARHGAP31	0	hgsc.bcm.edu	36	3	120603797	120603797	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
WDR5B	54554	hgsc.bcm.edu	36	3	123616346	123616346	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GFM1	85476	hgsc.bcm.edu	36	3	159846692	159846692	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PIK3CA	5290	hgsc.bcm.edu	36	3	180434682	180434682	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TBCCD1	55171	hgsc.bcm.edu	36	3	187751692	187751692	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CLDN16	10686	hgsc.bcm.edu	36	3	191608927	191608927	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
MUC4	4585	hgsc.bcm.edu	36	3	196990553	196990553	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
C12orf57	113246	hgsc.bcm.edu	36	12	6924015	6924015	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GUCY2C	2984	hgsc.bcm.edu	36	12	14669976	14669976	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PLEKHA5	54477	hgsc.bcm.edu	36	12	19310017	19310017	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GALNT6	11226	hgsc.bcm.edu	36	12	50040789	50040789	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KRT85	3891	hgsc.bcm.edu	36	12	51042928	51042928	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
OS9	10956	hgsc.bcm.edu	36	12	56374325	56374325	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TCHP	84260	hgsc.bcm.edu	36	12	108829801	108829801	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TBX3	6926	hgsc.bcm.edu	36	12	113601736	113601736	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GPR133	283383	hgsc.bcm.edu	36	12	130005145	130005145	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RASGRF1	5923	hgsc.bcm.edu	36	15	77126169	77126169	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FIGF	2277	hgsc.bcm.edu	36	X	15281157	15281157	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ACOT9	23597	hgsc.bcm.edu	36	X	23641193	23641193	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ZFX	7543	hgsc.bcm.edu	36	X	24136256	24136256	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DCX	1641	hgsc.bcm.edu	36	X	110540039	110540039	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RBMX	27316	hgsc.bcm.edu	36	X	135785393	135785393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CRMP1	1400	hgsc.bcm.edu	36	4	5913766	5913766	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PI4K2B	55300	hgsc.bcm.edu	36	4	24879193	24879193	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GNPDA2	132789	hgsc.bcm.edu	36	4	44413918	44413918	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CSN3	8533	hgsc.bcm.edu	36	4	71149396	71149396	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
C4orf35	85438	hgsc.bcm.edu	36	4	71235595	71235595	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FBXW7	55294	hgsc.bcm.edu	36	4	153466672	153466672	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
STOX2	56977	hgsc.bcm.edu	36	4	185167890	185167890	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
MAP4K3	8491	hgsc.bcm.edu	36	2	39406865	39406865	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PEX13	5194	hgsc.bcm.edu	36	2	61112526	61112526	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TMEM163	81615	hgsc.bcm.edu	36	2	135026124	135026124	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SCN2A	6326	hgsc.bcm.edu	36	2	165878836	165878836	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SCN1A	6323	hgsc.bcm.edu	36	2	166602854	166602854	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SCN7A	6332	hgsc.bcm.edu	36	2	166981538	166981538	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TTN	7273	hgsc.bcm.edu	36	2	179165028	179165028	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
HECW2	57520	hgsc.bcm.edu	36	2	196865719	196865719	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TNS1	7145	hgsc.bcm.edu	36	2	218391075	218391075	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SP100	6672	hgsc.bcm.edu	36	2	231040129	231040129	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KLHL30	377007	hgsc.bcm.edu	36	2	238714227	238714227	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GNA14	9630	hgsc.bcm.edu	36	9	79228877	79228877	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SVEP1	79987	hgsc.bcm.edu	36	9	112352110	112352110	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ATP12A	479	hgsc.bcm.edu	36	13	24181938	24181938	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PABPC3	5042	hgsc.bcm.edu	36	13	24568978	24568978	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FLT3	2322	hgsc.bcm.edu	36	13	27500380	27500380	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
BRCA2	675	hgsc.bcm.edu	36	13	31810553	31810553	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FAM194B	0	hgsc.bcm.edu	36	13	45040525	45040525	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
F10	83541	hgsc.bcm.edu	36	13	112851429	112851429	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TFDP1	7027	hgsc.bcm.edu	36	13	113336854	113336854	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
ANKRD30A	91074	hgsc.bcm.edu	36	10	37462923	37462923	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CHAT	10044	hgsc.bcm.edu	36	10	50527618	50527618	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PCDH15	65217	hgsc.bcm.edu	36	10	55252477	55252477	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PCDH15	65217	hgsc.bcm.edu	36	10	55808655	55808655	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PRF1	55893	hgsc.bcm.edu	36	10	72030302	72030302	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GRID1	2894	hgsc.bcm.edu	36	10	87956139	87956139	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PTEN	5728	hgsc.bcm.edu	36	10	89614283	89614283	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PTEN	5728	hgsc.bcm.edu	36	10	89682877	89682877	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PTEN	5728	hgsc.bcm.edu	36	10	89715187	89715187	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
C10orf79	80217	hgsc.bcm.edu	36	10	105910855	105910855	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CHST15	51363	hgsc.bcm.edu	36	10	125759732	125759732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
LRRC14B	0	hgsc.bcm.edu	36	5	247843	247843	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RXFP3	51289	hgsc.bcm.edu	36	5	33973138	33973138	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PIK3R1	5295	hgsc.bcm.edu	36	5	67622317	67622317	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
APC	324	hgsc.bcm.edu	36	5	112203114	112203114	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PCDHA2	56146	hgsc.bcm.edu	36	5	140156500	140156500	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PCDHGB4	8641	hgsc.bcm.edu	36	5	140748615	140748615	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
AFAP1L1	134265	hgsc.bcm.edu	36	5	148675650	148675650	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
TIMD4	91937	hgsc.bcm.edu	36	5	156281702	156281702	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
HAVCR2	84868	hgsc.bcm.edu	36	5	156466527	156466527	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SLC15A1	6564	hgsc.bcm.edu	36	13	98177097	98177097	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
LCE4A	199834	hgsc.bcm.edu	36	1	150948304	150948305	+	In_Frame_Ins	INS	-	-	AGCTCTGGGGGCTGCTGT	rs6143428	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
LOR	4014	hgsc.bcm.edu	36	1	151500112	151500113	+	In_Frame_Ins	INS	-	-	GGCGGT	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
FAM171B	165215	hgsc.bcm.edu	36	2	187267274	187267275	+	In_Frame_Ins	INS	-	-	CAG	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
SPATA3	130560	hgsc.bcm.edu	36	2	231569277	231569303	+	In_Frame_Del	DEL	CAGCAGCCTAGCCCTGAATCCACACCA	CAGCAGCCTAGCCCTGAATCCACACCA	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	CAGCAGCCTAGCCCTGAATCCACACCA	CAGCAGCCTAGCCCTGAATCCACACCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
APC	324	hgsc.bcm.edu	36	5	112203504	112203504	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PCDHGA10	56106	hgsc.bcm.edu	36	5	140775393	140775393	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
EYS	346007	hgsc.bcm.edu	36	6	65074937	65074938	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
C6orf70	55780	hgsc.bcm.edu	36	6	169917341	169917342	+	Frame_Shift_Ins	INS	-	-	GAAGA	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
HOXA11	3207	hgsc.bcm.edu	36	7	27188987	27188987	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
NEFM	4741	hgsc.bcm.edu	36	8	24830776	24830777	+	In_Frame_Ins	INS	-	-	GAA	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
PRKDC	5591	hgsc.bcm.edu	36	8	49029463	49029463	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
UBTFL1	642623	hgsc.bcm.edu	36	11	89459536	89459537	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KRT4	3851	hgsc.bcm.edu	36	12	51493869	51493870	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
GOLGA6L6	0	hgsc.bcm.edu	36	15	18999858	18999899	+	In_Frame_Del	DEL	GTATCTTCTCCTCCTGCTCCCGTATCTTCTCCTCCTGCTCCT	GTATCTTCTCCTCCTGCTCCCGTATCTTCTCCTCCTGCTCCT	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	GTATCTTCTCCTCCTGCTCCCGTATCTTCTCCTCCTGCTCCT	GTATCTTCTCCTCCTGCTCCCGTATCTTCTCCTCCTGCTCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
CHD2	1106	hgsc.bcm.edu	36	15	91341320	91341320	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
HYDIN	54768	hgsc.bcm.edu	36	16	69512205	69512219	+	In_Frame_Del	DEL	GCGCTCCTTCTCCGT	GCGCTCCTTCTCCGT	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	GCGCTCCTTCTCCGT	GCGCTCCTTCTCCGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
KIAA1468	57614	hgsc.bcm.edu	36	18	58076263	58076265	+	In_Frame_Del	DEL	ATT	ATT	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	ATT	ATT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
UHRF1	29128	hgsc.bcm.edu	36	19	4905679	4905680	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
DEFB126	81623	hgsc.bcm.edu	36	20	74311	74312	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
VCX2	51480	hgsc.bcm.edu	36	X	8098165	8098168	+	Frame_Shift_Del	DEL	CCTC	CCTC	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	CCTC	CCTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
RBMX	27316	hgsc.bcm.edu	36	X	135789253	135789253	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
F8	2157	hgsc.bcm.edu	36	X	153811388	153811389	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-5656-01A-21D-1835-10	TCGA-A6-5656-10A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	43806322-2628-493b-8a9a-149948682877	e2b2ce67-f765-44fa-a68a-142577002105
