Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
CARD11	84433	hgsc.bcm.edu	36	7	2946064	2946064	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WIPI2	26100	hgsc.bcm.edu	36	7	5205798	5205798	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
USP42	84132	hgsc.bcm.edu	36	7	6156445	6156445	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CCDC129	223075	hgsc.bcm.edu	36	7	31649377	31649377	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FKBP9	11328	hgsc.bcm.edu	36	7	33008964	33008964	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OGDH	4967	hgsc.bcm.edu	36	7	44713821	44713821	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IKZF1	10320	hgsc.bcm.edu	36	7	50422623	50422623	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MAGI2	9863	hgsc.bcm.edu	36	7	77723363	77723363	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PPP1R9A	55607	hgsc.bcm.edu	36	7	94665627	94665627	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PON3	5446	hgsc.bcm.edu	36	7	94830073	94830073	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DLX6	1750	hgsc.bcm.edu	36	7	96477084	96477084	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RINT1	60561	hgsc.bcm.edu	36	7	104974662	104974662	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LRRC4	64101	hgsc.bcm.edu	36	7	127456195	127456195	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GIMAP1-GIMAP5	0	hgsc.bcm.edu	36	7	150070873	150070873	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SNPH	9751	hgsc.bcm.edu	36	20	1233609	1233609	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
BFSP1	631	hgsc.bcm.edu	36	20	17423131	17423131	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDK5RAP1	51654	hgsc.bcm.edu	36	20	31431072	31431072	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RALY	22913	hgsc.bcm.edu	36	20	32125080	32125080	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SLPI	6590	hgsc.bcm.edu	36	20	43316569	43316569	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CD40	958	hgsc.bcm.edu	36	20	44184672	44184672	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CCT8L2	150160	hgsc.bcm.edu	36	22	15452893	15452893	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
EP300	2033	hgsc.bcm.edu	36	22	39843230	39843230	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SELO	83642	hgsc.bcm.edu	36	22	48990844	48990844	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TUBGCP6	85378	hgsc.bcm.edu	36	22	49004974	49004974	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KCNH5	27133	hgsc.bcm.edu	36	14	62338933	62338933	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PIGH	5283	hgsc.bcm.edu	36	14	67130372	67130372	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTC9	23508	hgsc.bcm.edu	36	14	70204185	70204185	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA1409	57578	hgsc.bcm.edu	36	14	93129916	93129916	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PPP2R5C	5527	hgsc.bcm.edu	36	14	101392846	101392846	+	Silent	SNP	T	T	C	rs61735777	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HSP90AA1	3320	hgsc.bcm.edu	36	14	101621437	101621437	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR1I1	126370	hgsc.bcm.edu	36	19	15058971	15058971	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR10H2	26538	hgsc.bcm.edu	36	19	15700233	15700233	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CPAMD8	27151	hgsc.bcm.edu	36	19	16868058	16868058	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF493	284443	hgsc.bcm.edu	36	19	21399233	21399233	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF676	163223	hgsc.bcm.edu	36	19	22154629	22154629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF607	84775	hgsc.bcm.edu	36	19	42881739	42881739	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RYR1	6261	hgsc.bcm.edu	36	19	43656180	43656180	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PRR19	284338	hgsc.bcm.edu	36	19	47506314	47506314	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF615	284370	hgsc.bcm.edu	36	19	57187993	57187993	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CNOT3	4849	hgsc.bcm.edu	36	19	59349277	59349277	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NLRP8	126205	hgsc.bcm.edu	36	19	61159080	61159080	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
AURKC	6795	hgsc.bcm.edu	36	19	62436713	62436713	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF530	348327	hgsc.bcm.edu	36	19	62809471	62809471	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DLGAP2	9228	hgsc.bcm.edu	36	8	1632813	1632813	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
XKR6	286046	hgsc.bcm.edu	36	8	10793288	10793288	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DLC1	10395	hgsc.bcm.edu	36	8	13004676	13004676	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DLC1	10395	hgsc.bcm.edu	36	8	13303482	13303482	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SGCZ	137868	hgsc.bcm.edu	36	8	14139485	14139485	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PRKDC	5591	hgsc.bcm.edu	36	8	48854159	48854159	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PRKDC	5591	hgsc.bcm.edu	36	8	48929315	48929315	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RGS20	8601	hgsc.bcm.edu	36	8	54954407	54954407	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SGK3	23678	hgsc.bcm.edu	36	8	67906082	67906082	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PREX2	80243	hgsc.bcm.edu	36	8	69182958	69182958	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TRPA1	8989	hgsc.bcm.edu	36	8	73097890	73097890	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MMP16	4325	hgsc.bcm.edu	36	8	89267875	89267875	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RSPO2	340419	hgsc.bcm.edu	36	8	109039664	109039664	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MYC	8996	hgsc.bcm.edu	36	8	128820127	128820127	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
EFR3A	23167	hgsc.bcm.edu	36	8	133084700	133084700	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PHF20L1	51105	hgsc.bcm.edu	36	8	133876183	133876183	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TG	7038	hgsc.bcm.edu	36	8	134004768	134004768	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SEPN1	57190	hgsc.bcm.edu	36	1	26004231	26004231	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GJB5	2709	hgsc.bcm.edu	36	1	34996241	34996241	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA0319L	79932	hgsc.bcm.edu	36	1	35686376	35686376	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TFAP2E	339488	hgsc.bcm.edu	36	1	35826605	35826605	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KDM4A	9682	hgsc.bcm.edu	36	1	43891437	43891437	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PODN	127435	hgsc.bcm.edu	36	1	53308411	53308411	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MIER1	57708	hgsc.bcm.edu	36	1	67184457	67184457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WDR63	126820	hgsc.bcm.edu	36	1	85342826	85342826	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SYPL2	284612	hgsc.bcm.edu	36	1	109820954	109820954	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TCHHL1	126637	hgsc.bcm.edu	36	1	150325936	150325936	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LCE2B	26239	hgsc.bcm.edu	36	1	150926124	150926124	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IVL	3713	hgsc.bcm.edu	36	1	151149198	151149198	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CLK2	9894	hgsc.bcm.edu	36	1	153506018	153506018	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR6P1	128366	hgsc.bcm.edu	36	1	156799721	156799721	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR10J5	127385	hgsc.bcm.edu	36	1	157772042	157772042	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ATP1A2	477	hgsc.bcm.edu	36	1	158371026	158371026	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RGS4	5999	hgsc.bcm.edu	36	1	161310854	161310854	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ABL2	27	hgsc.bcm.edu	36	1	177350640	177350640	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RGS8	85397	hgsc.bcm.edu	36	1	180883952	180883952	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDC73	79577	hgsc.bcm.edu	36	1	191360877	191360877	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CFHR5	81494	hgsc.bcm.edu	36	1	195231510	195231510	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CAMSAP1L1	23271	hgsc.bcm.edu	36	1	198996694	198996694	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MARK1	4139	hgsc.bcm.edu	36	1	218858420	218858420	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OBSCN	84033	hgsc.bcm.edu	36	1	226533623	226533623	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NID1	4811	hgsc.bcm.edu	36	1	234215395	234215395	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HEATR1	55127	hgsc.bcm.edu	36	1	234814951	234814951	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR2W3	343171	hgsc.bcm.edu	36	1	246126361	246126361	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MUC5B	727897	hgsc.bcm.edu	36	11	1221594	1221594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR52E6	390078	hgsc.bcm.edu	36	11	5819224	5819224	+	Silent	SNP	T	T	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
APBB1	322	hgsc.bcm.edu	36	11	6388776	6388776	+	Silent	SNP	G	G	A	rs2682094	byFrequency;byHapMap	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RAG2	5897	hgsc.bcm.edu	36	11	36571140	36571140	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF408	161882	hgsc.bcm.edu	36	11	46683391	46683391	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SPRYD5	84767	hgsc.bcm.edu	36	11	55415582	55415582	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
VPS37C	55048	hgsc.bcm.edu	36	11	60658210	60658210	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PLCB3	5331	hgsc.bcm.edu	36	11	63787790	63787790	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NRXN2	9379	hgsc.bcm.edu	36	11	64214463	64214463	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GAL3ST3	89792	hgsc.bcm.edu	36	11	65567629	65567629	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PC	5624	hgsc.bcm.edu	36	11	66374342	66374342	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SPCS2	9789	hgsc.bcm.edu	36	11	74354578	74354578	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DLG2	4355	hgsc.bcm.edu	36	11	83923373	83923373	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAT3	120114	hgsc.bcm.edu	36	11	91726110	91726110	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAT3	120114	hgsc.bcm.edu	36	11	92172491	92172491	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
AMOTL1	154810	hgsc.bcm.edu	36	11	94172436	94172436	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GRIA4	2893	hgsc.bcm.edu	36	11	105347926	105347926	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CWF19L2	143884	hgsc.bcm.edu	36	11	106805096	106805096	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ATM	472	hgsc.bcm.edu	36	11	107701463	107701463	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PCSK7	9159	hgsc.bcm.edu	36	11	116605488	116605488	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDON	50937	hgsc.bcm.edu	36	11	125381080	125381080	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GCNT2	2651	hgsc.bcm.edu	36	6	10694810	10694810	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ERVFRDE1	0	hgsc.bcm.edu	36	6	11212993	11212993	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ERVFRDE1	0	hgsc.bcm.edu	36	6	11213449	11213449	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
VARS	7407	hgsc.bcm.edu	36	6	31861046	31861046	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RXRB	6257	hgsc.bcm.edu	36	6	33274219	33274219	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TFAP2D	83741	hgsc.bcm.edu	36	6	50791069	50791069	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CD109	135228	hgsc.bcm.edu	36	6	74502933	74502933	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTK	7272	hgsc.bcm.edu	36	6	80801800	80801800	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KLHL32	114792	hgsc.bcm.edu	36	6	97693780	97693780	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SEC63	11231	hgsc.bcm.edu	36	6	108334655	108334655	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
AKD1	221264	hgsc.bcm.edu	36	6	109943849	109943849	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GPRC6A	222545	hgsc.bcm.edu	36	6	117237275	117237275	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LAMA2	3908	hgsc.bcm.edu	36	6	129854835	129854835	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ALDH8A1	64577	hgsc.bcm.edu	36	6	135305258	135305258	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA1244	57221	hgsc.bcm.edu	36	6	138572855	138572855	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SLC22A2	6582	hgsc.bcm.edu	36	6	160584665	160584665	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TP53	7157	hgsc.bcm.edu	36	17	7519251	7519251	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MYH1	4619	hgsc.bcm.edu	36	17	10352552	10352552	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NF1	4763	hgsc.bcm.edu	36	17	26580207	26580207	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
EVI2A	2123	hgsc.bcm.edu	36	17	26670112	26670112	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RAD51L3	5892	hgsc.bcm.edu	36	17	30452129	30452129	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GPR179	440435	hgsc.bcm.edu	36	17	33746603	33746603	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDK12	0	hgsc.bcm.edu	36	17	34902573	34902573	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SMARCE1	6605	hgsc.bcm.edu	36	17	36045778	36045778	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KRT39	390792	hgsc.bcm.edu	36	17	36372277	36372277	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KLHL10	317719	hgsc.bcm.edu	36	17	37251791	37251791	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
BRCA1	672	hgsc.bcm.edu	36	17	38499721	38499721	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HEXIM2	124790	hgsc.bcm.edu	36	17	40602178	40602178	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
BZRAP1	9256	hgsc.bcm.edu	36	17	53744835	53744835	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ABCA5	23461	hgsc.bcm.edu	36	17	64768876	64768876	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CANT1	124583	hgsc.bcm.edu	36	17	74504870	74504870	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
BAIAP2	10458	hgsc.bcm.edu	36	17	76693071	76693071	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TIAM1	7074	hgsc.bcm.edu	36	21	31489445	31489445	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DYRK1A	1859	hgsc.bcm.edu	36	21	37784530	37784530	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
C21orf29	54084	hgsc.bcm.edu	36	21	44771668	44771668	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WDR24	84219	hgsc.bcm.edu	36	16	677324	677324	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CACNA1H	8912	hgsc.bcm.edu	36	16	1196132	1196132	+	Silent	SNP	C	C	T	rs59636120	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MYH11	4629	hgsc.bcm.edu	36	16	15721563	15721563	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TNRC6A	27327	hgsc.bcm.edu	36	16	24708914	24708914	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DCTPP1	79077	hgsc.bcm.edu	36	16	30343100	30343100	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF689	115509	hgsc.bcm.edu	36	16	30523272	30523272	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SLC12A3	6559	hgsc.bcm.edu	36	16	55461634	55461634	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FHOD1	29109	hgsc.bcm.edu	36	16	65822080	65822080	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ACD	65057	hgsc.bcm.edu	36	16	66249592	66249592	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PSMB10	5699	hgsc.bcm.edu	36	16	66527384	66527384	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ESRP2	80004	hgsc.bcm.edu	36	16	66823078	66823078	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDH1	51343	hgsc.bcm.edu	36	16	67393083	67393083	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HYDIN	54768	hgsc.bcm.edu	36	16	69512514	69512514	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ADAMTS18	170692	hgsc.bcm.edu	36	16	75953575	75953575	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA1632	57724	hgsc.bcm.edu	36	18	41723804	41723804	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SMAD4	4089	hgsc.bcm.edu	36	18	46858687	46858687	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TNFRSF11A	8792	hgsc.bcm.edu	36	18	58178191	58178191	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CNTN4	152330	hgsc.bcm.edu	36	3	3056749	3056749	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CAV3	859	hgsc.bcm.edu	36	3	8762474	8762474	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ARPP21	0	hgsc.bcm.edu	36	3	35738220	35738220	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SLC22A13	9390	hgsc.bcm.edu	36	3	38282449	38282449	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SCN5A	6331	hgsc.bcm.edu	36	3	38623204	38623204	+	Missense_Mutation	SNP	C	C	T	rs28937318	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SETD2	29072	hgsc.bcm.edu	36	3	47119865	47119865	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
STAB1	23166	hgsc.bcm.edu	36	3	52528572	52528572	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CACNA2D3	55799	hgsc.bcm.edu	36	3	54578915	54578915	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR5H1	26341	hgsc.bcm.edu	36	3	99335002	99335002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR5H1	26341	hgsc.bcm.edu	36	3	99335005	99335005	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR5H15	403274	hgsc.bcm.edu	36	3	99370979	99370979	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GOLGB1	2804	hgsc.bcm.edu	36	3	122893195	122893195	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PARP9	83666	hgsc.bcm.edu	36	3	123757445	123757445	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PARP14	54625	hgsc.bcm.edu	36	3	123901843	123901843	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CCDC14	64770	hgsc.bcm.edu	36	3	125117200	125117200	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
COL6A6	131873	hgsc.bcm.edu	36	3	131812238	131812238	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CHST2	9435	hgsc.bcm.edu	36	3	144323381	144323381	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HPS3	84343	hgsc.bcm.edu	36	3	150368428	150368428	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MME	4321	hgsc.bcm.edu	36	3	156368975	156368975	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SAMD7	344658	hgsc.bcm.edu	36	3	171127291	171127291	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NAALADL2	254827	hgsc.bcm.edu	36	3	176672193	176672193	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PIK3CA	5290	hgsc.bcm.edu	36	3	180399570	180399570	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LAMP3	27074	hgsc.bcm.edu	36	3	184354185	184354185	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LSG1	55341	hgsc.bcm.edu	36	3	195868535	195868535	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TFRC	7037	hgsc.bcm.edu	36	3	197283391	197283391	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
C3orf43	255798	hgsc.bcm.edu	36	3	197719524	197719524	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KCNA1	3736	hgsc.bcm.edu	36	12	4891313	4891313	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PLEKHA5	54477	hgsc.bcm.edu	36	12	19319092	19319092	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KRAS	3845	hgsc.bcm.edu	36	12	25289551	25289551	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
C12orf40	283461	hgsc.bcm.edu	36	12	38363091	38363091	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
LRRK2	120892	hgsc.bcm.edu	36	12	39047754	39047754	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KRT73	319101	hgsc.bcm.edu	36	12	51294706	51294706	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR6C74	254783	hgsc.bcm.edu	36	12	53927710	53927710	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
E2F7	144455	hgsc.bcm.edu	36	12	75968574	75968574	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
C12orf64	283310	hgsc.bcm.edu	36	12	79254901	79254901	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PPFIA2	8499	hgsc.bcm.edu	36	12	80212818	80212818	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TMEM132B	114795	hgsc.bcm.edu	36	12	124702980	124702980	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TMEM132D	121256	hgsc.bcm.edu	36	12	128124940	128124940	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PIWIL1	9271	hgsc.bcm.edu	36	12	129397538	129397538	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
UNC13C	440279	hgsc.bcm.edu	36	15	52580338	52580338	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IGDCC4	57722	hgsc.bcm.edu	36	15	63463671	63463671	+	Missense_Mutation	SNP	G	G	T	rs61747070	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CHRNA3	1136	hgsc.bcm.edu	36	15	76680913	76680913	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAM47B	170062	hgsc.bcm.edu	36	X	34870945	34870945	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CXorf30	645090	hgsc.bcm.edu	36	X	36276214	36276214	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PORCN	64840	hgsc.bcm.edu	36	X	48259089	48259089	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HEPH	9843	hgsc.bcm.edu	36	X	65335470	65335470	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA2022	340533	hgsc.bcm.edu	36	X	73879831	73879831	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA2022	340533	hgsc.bcm.edu	36	X	73879995	73879995	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CYSLTR1	10800	hgsc.bcm.edu	36	X	77415024	77415024	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GPR174	84636	hgsc.bcm.edu	36	X	78313903	78313903	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAM133A	286499	hgsc.bcm.edu	36	X	92851394	92851394	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PLS3	5358	hgsc.bcm.edu	36	X	114787054	114787054	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA1210	57481	hgsc.bcm.edu	36	X	118104595	118104595	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
AIFM1	9131	hgsc.bcm.edu	36	X	129091278	129091278	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MST4	51765	hgsc.bcm.edu	36	X	131016405	131016405	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MAGEC2	51438	hgsc.bcm.edu	36	X	141118923	141118923	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
EVC	2121	hgsc.bcm.edu	36	4	5808967	5808967	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ACOX3	8310	hgsc.bcm.edu	36	4	8447260	8447260	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CC2D2A	57545	hgsc.bcm.edu	36	4	15184928	15184928	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PI4K2B	55300	hgsc.bcm.edu	36	4	24871246	24871246	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SPATA18	132671	hgsc.bcm.edu	36	4	52632938	52632938	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PDGFRA	5156	hgsc.bcm.edu	36	4	54835826	54835826	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PDGFRA	5156	hgsc.bcm.edu	36	4	54838929	54838929	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIT	3815	hgsc.bcm.edu	36	4	55288387	55288387	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIT	3815	hgsc.bcm.edu	36	4	55297421	55297421	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
AASDH	132949	hgsc.bcm.edu	36	4	56915069	56915069	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WDFY3	23001	hgsc.bcm.edu	36	4	85936871	85936871	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WDFY3	23001	hgsc.bcm.edu	36	4	85936872	85936872	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
HERC5	51191	hgsc.bcm.edu	36	4	89616063	89616063	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GRID2	2895	hgsc.bcm.edu	36	4	94357012	94357012	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
BANK1	55024	hgsc.bcm.edu	36	4	102970199	102970199	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DKK2	27123	hgsc.bcm.edu	36	4	108176005	108176005	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAT4	79633	hgsc.bcm.edu	36	4	126462069	126462069	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FBXW7	55294	hgsc.bcm.edu	36	4	153468907	153468907	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MYT1L	23040	hgsc.bcm.edu	36	2	1886005	1886005	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OTOF	9381	hgsc.bcm.edu	36	2	26565607	26565607	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GALNT14	79623	hgsc.bcm.edu	36	2	31069357	31069357	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
STON1-GTF2A1L	286749	hgsc.bcm.edu	36	2	48662989	48662989	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
REG1B	5968	hgsc.bcm.edu	36	2	79166160	79166160	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
REG1B	5968	hgsc.bcm.edu	36	2	79167532	79167532	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DNAH6	1768	hgsc.bcm.edu	36	2	84734132	84734132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
POTEF	728378	hgsc.bcm.edu	36	2	130549120	130549120	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SLC4A10	57282	hgsc.bcm.edu	36	2	162521995	162521995	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SCN9A	6335	hgsc.bcm.edu	36	2	166791370	166791370	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTN	7273	hgsc.bcm.edu	36	2	179146573	179146573	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTN	7273	hgsc.bcm.edu	36	2	179161599	179161599	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTN	7273	hgsc.bcm.edu	36	2	179319394	179319394	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTN	7273	hgsc.bcm.edu	36	2	179343451	179343451	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTN	7273	hgsc.bcm.edu	36	2	179350426	179350426	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZSWIM2	151112	hgsc.bcm.edu	36	2	187421960	187421960	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
COL3A1	1281	hgsc.bcm.edu	36	2	189576731	189576731	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SGOL2	151246	hgsc.bcm.edu	36	2	201145885	201145885	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZDBF2	57683	hgsc.bcm.edu	36	2	206881738	206881738	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
UNC80	285175	hgsc.bcm.edu	36	2	210407043	210407043	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
UNC80	285175	hgsc.bcm.edu	36	2	210407920	210407920	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ERBB4	2066	hgsc.bcm.edu	36	2	212520401	212520401	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TMEM198	130612	hgsc.bcm.edu	36	2	220120810	220120810	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IRS1	3667	hgsc.bcm.edu	36	2	227371239	227371239	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
DNAJB3	414061	hgsc.bcm.edu	36	2	234317083	234317083	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IQCA1	79781	hgsc.bcm.edu	36	2	236917959	236917959	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTPRD	5789	hgsc.bcm.edu	36	9	8476142	8476142	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FREM1	158326	hgsc.bcm.edu	36	9	14849270	14849270	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA1797	54914	hgsc.bcm.edu	36	9	20864703	20864703	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
VPS13A	23230	hgsc.bcm.edu	36	9	79043105	79043105	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FAM120AOS	158293	hgsc.bcm.edu	36	9	95254377	95254377	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTCH1	5727	hgsc.bcm.edu	36	9	97287907	97287907	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TDRD7	23424	hgsc.bcm.edu	36	9	99297810	99297810	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ZNF189	7743	hgsc.bcm.edu	36	9	103210725	103210725	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OR13F1	138805	hgsc.bcm.edu	36	9	106307156	106307156	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PAPPA	5069	hgsc.bcm.edu	36	9	117989333	117989333	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CDK5RAP2	55755	hgsc.bcm.edu	36	9	122250134	122250134	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TTF1	7270	hgsc.bcm.edu	36	9	134267312	134267312	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NOTCH1	4851	hgsc.bcm.edu	36	9	138510453	138510453	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ABCA2	20	hgsc.bcm.edu	36	9	139030415	139030415	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GPR12	2835	hgsc.bcm.edu	36	13	26231412	26231412	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PCDH20	64881	hgsc.bcm.edu	36	13	60884811	60884811	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CUBN	8029	hgsc.bcm.edu	36	10	17001996	17001996	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MYO3A	53904	hgsc.bcm.edu	36	10	26486319	26486319	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ANKRD26	22852	hgsc.bcm.edu	36	10	27343587	27343587	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WAC	51322	hgsc.bcm.edu	36	10	28940844	28940844	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
EPC1	80314	hgsc.bcm.edu	36	10	32600732	32600732	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
WDFY4	57705	hgsc.bcm.edu	36	10	49755206	49755206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTEN	5728	hgsc.bcm.edu	36	10	89682851	89682851	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTEN	5728	hgsc.bcm.edu	36	10	89682871	89682871	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTEN	5728	hgsc.bcm.edu	36	10	89682883	89682883	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
FRA10AC1	118924	hgsc.bcm.edu	36	10	95435038	95435038	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GOT1	127845	hgsc.bcm.edu	36	10	101147364	101147364	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CHUK	1147	hgsc.bcm.edu	36	10	101954322	101954322	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PKD2L1	9033	hgsc.bcm.edu	36	10	102046741	102046741	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PKD2L1	9033	hgsc.bcm.edu	36	10	102049457	102049457	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
VTI1A	143187	hgsc.bcm.edu	36	10	114565098	114565098	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ATRNL1	26033	hgsc.bcm.edu	36	10	116921033	116921033	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CPXM2	119587	hgsc.bcm.edu	36	10	125511463	125511463	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NDUFS6	4726	hgsc.bcm.edu	36	5	1867533	1867533	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NSUN2	54888	hgsc.bcm.edu	36	5	6653247	6653247	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ADCY2	108	hgsc.bcm.edu	36	5	7855373	7855373	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
SEMA5A	9037	hgsc.bcm.edu	36	5	9433001	9433001	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CTNND2	1501	hgsc.bcm.edu	36	5	11212739	11212739	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IL7R	3575	hgsc.bcm.edu	36	5	35912067	35912067	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NIPBL	25836	hgsc.bcm.edu	36	5	37021620	37021620	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NIPBL	25836	hgsc.bcm.edu	36	5	37080279	37080279	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ERBB2IP	55914	hgsc.bcm.edu	36	5	65375816	65375816	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
NSA2	10412	hgsc.bcm.edu	36	5	74102273	74102273	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RASGRF2	5924	hgsc.bcm.edu	36	5	80444383	80444383	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
GPR98	84059	hgsc.bcm.edu	36	5	90024330	90024330	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CHD1	1105	hgsc.bcm.edu	36	5	98264664	98264664	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
APC	324	hgsc.bcm.edu	36	5	112201287	112201287	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
APC	324	hgsc.bcm.edu	36	5	112203323	112203323	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MCC	4163	hgsc.bcm.edu	36	5	112506887	112506887	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PCDHA5	56143	hgsc.bcm.edu	36	5	140182822	140182822	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PCDHGA4	56111	hgsc.bcm.edu	36	5	140714971	140714971	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PPP2R2B	5521	hgsc.bcm.edu	36	5	146060850	146060850	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
UNC5A	90249	hgsc.bcm.edu	36	5	176237215	176237215	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CPVL	54504	hgsc.bcm.edu	36	7	29077912	29077912	+	Splice_Site	SNP	A	A	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PTPRB	5787	hgsc.bcm.edu	36	12	69216071	69216071	+	Splice_Site	SNP	C	C	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
CC2D1B	200014	hgsc.bcm.edu	36	1	52596089	52596089	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
OVGP1	5016	hgsc.bcm.edu	36	1	111759046	111759047	+	In_Frame_Ins	INS	-	-	GGTCAGGGTCTTCTGTCCAGT	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MORC1	27136	hgsc.bcm.edu	36	3	110165108	110165109	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MED12L	116931	hgsc.bcm.edu	36	3	152359179	152359179	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
KIAA0232	9778	hgsc.bcm.edu	36	4	6915356	6915357	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ENPP6	133121	hgsc.bcm.edu	36	4	185375910	185375911	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MLLT4	4301	hgsc.bcm.edu	36	6	168013998	168014000	+	In_Frame_Del	DEL	AAG	AAG	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	AAG	AAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ANGPT2	285	hgsc.bcm.edu	36	8	6366205	6366206	+	Frame_Shift_Ins	INS	-	-	T	rs34047276	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
IPMK	253430	hgsc.bcm.edu	36	10	59626173	59626174	+	Frame_Shift_Del	DEL	CT	CT	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
ART5	116969	hgsc.bcm.edu	36	11	3618161	3618162	+	In_Frame_Ins	INS	-	-	TGG	rs3062849	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
PHGR1	0	hgsc.bcm.edu	36	15	38435665	38435697	+	In_Frame_Del	DEL	CCAGGGCCCTGCGGGCCACCCCCTGGCCATGGC	CCAGGGCCCTGCGGGCCACCCCCTGGCCATGGC	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	CCAGGGCCCTGCGGGCCACCCCCTGGCCATGGC	CCAGGGCCCTGCGGGCCACCCCCTGGCCATGGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
MAF	4094	hgsc.bcm.edu	36	16	78190302	78190304	+	In_Frame_Del	DEL	CTC	CTC	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	CTC	CTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
TXNDC2	84203	hgsc.bcm.edu	36	18	9877389	9877433	+	In_Frame_Del	DEL	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	-	novel	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
RBM38	55544	hgsc.bcm.edu	36	20	55400099	55400100	+	Frame_Shift_Ins	INS	-	-	C	rs11481309	unknown	TCGA-A6-5659-01A-01D-1650-10	TCGA-A6-5659-11A-01D-1650-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	629ef446-e06a-4bff-b2aa-087690869190	b5eb58df-e753-4dda-b7d1-335de55750b9
