Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
AKAP9	10142	hgsc.bcm.edu	36	7	91546642	91546642	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C7orf53	286006	hgsc.bcm.edu	36	7	111914314	111914314	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KIF16B	55614	hgsc.bcm.edu	36	20	16307605	16307605	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF280B	140883	hgsc.bcm.edu	36	22	21173714	21173714	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TSHR	7253	hgsc.bcm.edu	36	14	80679100	80679100	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNRF4	148066	hgsc.bcm.edu	36	19	5407201	5407201	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CYP4F3	4051	hgsc.bcm.edu	36	19	15624689	15624689	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
RYR1	6261	hgsc.bcm.edu	36	19	43694963	43694963	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PLD3	23646	hgsc.bcm.edu	36	19	45575550	45575550	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZFP112	7771	hgsc.bcm.edu	36	19	49523685	49523685	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KIR3DL1	3811	hgsc.bcm.edu	36	19	60023212	60023212	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DEFB135	613209	hgsc.bcm.edu	36	8	11877262	11877262	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
NKX3-1	4824	hgsc.bcm.edu	36	8	23594790	23594790	+	Silent	SNP	C	C	T	rs35675040	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ASH2L	9070	hgsc.bcm.edu	36	8	38105560	38105560	+	Silent	SNP	A	A	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
LYN	4067	hgsc.bcm.edu	36	8	57073563	57073563	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PREX2	80243	hgsc.bcm.edu	36	8	69168446	69168446	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZFHX4	79776	hgsc.bcm.edu	36	8	77938102	77938102	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FAM82B	51115	hgsc.bcm.edu	36	8	87567829	87567829	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
EIF3E	3646	hgsc.bcm.edu	36	8	109310491	109310491	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
LRRC6	23639	hgsc.bcm.edu	36	8	133706814	133706814	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PTK2	5747	hgsc.bcm.edu	36	8	141780244	141780244	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
BAI2	576	hgsc.bcm.edu	36	1	31966427	31966427	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZSCAN20	7579	hgsc.bcm.edu	36	1	33733427	33733427	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CLSPN	63967	hgsc.bcm.edu	36	1	35998786	35998786	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
SLC44A5	204962	hgsc.bcm.edu	36	1	75476848	75476848	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ST6GALNAC3	256435	hgsc.bcm.edu	36	1	76650492	76650492	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KCNC4	3749	hgsc.bcm.edu	36	1	110567347	110567347	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
NRAS	4893	hgsc.bcm.edu	36	1	115058087	115058087	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PHGDH	26227	hgsc.bcm.edu	36	1	120079486	120079486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CGN	57530	hgsc.bcm.edu	36	1	149774953	149774953	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
EDEM3	80267	hgsc.bcm.edu	36	1	182952722	182952722	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FAM5C	339479	hgsc.bcm.edu	36	1	188396447	188396447	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PTPRC	5788	hgsc.bcm.edu	36	1	196964107	196964107	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CNIH4	29097	hgsc.bcm.edu	36	1	222625631	222625631	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
OR4X1	390113	hgsc.bcm.edu	36	11	48242166	48242166	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
SLC22A9	114571	hgsc.bcm.edu	36	11	62932888	62932888	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
SF1	7536	hgsc.bcm.edu	36	11	64300623	64300623	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
EXPH5	23086	hgsc.bcm.edu	36	11	107890585	107890585	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
MLL	4297	hgsc.bcm.edu	36	11	117879270	117879270	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ST3GAL4	6484	hgsc.bcm.edu	36	11	125789108	125789108	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KCNJ1	3758	hgsc.bcm.edu	36	11	128214430	128214430	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
MYLK4	340156	hgsc.bcm.edu	36	6	2634128	2634128	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
HIST1H4L	8368	hgsc.bcm.edu	36	6	27949077	27949077	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TNXB	7148	hgsc.bcm.edu	36	6	32145565	32145565	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
HLA-DRA	3122	hgsc.bcm.edu	36	6	32518325	32518325	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PHF3	23469	hgsc.bcm.edu	36	6	64452834	64452834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DDX43	55510	hgsc.bcm.edu	36	6	74161519	74161519	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PRSS35	167681	hgsc.bcm.edu	36	6	84290937	84290937	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
GJA10	84694	hgsc.bcm.edu	36	6	90661598	90661598	+	Silent	SNP	A	A	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PRDM1	639	hgsc.bcm.edu	36	6	106642978	106642978	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FAM184A	79632	hgsc.bcm.edu	36	6	119343134	119343134	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C6orf170	221322	hgsc.bcm.edu	36	6	121443617	121443617	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C6orf170	221322	hgsc.bcm.edu	36	6	121680366	121680366	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PDE7B	27115	hgsc.bcm.edu	36	6	136514077	136514077	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
UTRN	7402	hgsc.bcm.edu	36	6	144825490	144825490	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TBP	6908	hgsc.bcm.edu	36	6	170712938	170712938	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TRPV3	162514	hgsc.bcm.edu	36	17	3374364	3374364	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TP53	7157	hgsc.bcm.edu	36	17	7519132	7519132	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DNAH9	1770	hgsc.bcm.edu	36	17	11534211	11534211	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ATAD5	79915	hgsc.bcm.edu	36	17	26186389	26186389	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
NF1	4763	hgsc.bcm.edu	36	17	26577628	26577628	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
UNC45B	146862	hgsc.bcm.edu	36	17	30537436	30537436	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
GDPD1	284161	hgsc.bcm.edu	36	17	54703088	54703088	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
GPRC5C	55890	hgsc.bcm.edu	36	17	69951639	69951639	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
JMJD6	23210	hgsc.bcm.edu	36	17	72233478	72233478	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
GABPA	2551	hgsc.bcm.edu	36	21	26043285	26043285	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
SETD4	54093	hgsc.bcm.edu	36	21	36338079	36338079	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
OTOA	146183	hgsc.bcm.edu	36	16	21647090	21647090	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KIAA0556	23247	hgsc.bcm.edu	36	16	27668473	27668473	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
HYDIN	54768	hgsc.bcm.edu	36	16	69512516	69512516	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ESCO1	114799	hgsc.bcm.edu	36	18	17408335	17408335	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DSC2	1825	hgsc.bcm.edu	36	18	26920671	26920671	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
RIT2	6014	hgsc.bcm.edu	36	18	38808107	38808107	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
MAP4	4134	hgsc.bcm.edu	36	3	47935240	47935240	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
HSPBAP1	79663	hgsc.bcm.edu	36	3	123970329	123970329	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PIK3CA	5290	hgsc.bcm.edu	36	3	180418766	180418766	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ATP13A5	344905	hgsc.bcm.edu	36	3	194514647	194514647	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PTPRQ	374462	hgsc.bcm.edu	36	12	79414296	79414296	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
MLXIP	22877	hgsc.bcm.edu	36	12	121186066	121186066	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CCDC62	84660	hgsc.bcm.edu	36	12	121842533	121842533	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TUBGCP5	114791	hgsc.bcm.edu	36	15	20420352	20420352	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CKMT1B	1159	hgsc.bcm.edu	36	15	41678375	41678375	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
VPS13C	54832	hgsc.bcm.edu	36	15	60006617	60006617	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF41	7592	hgsc.bcm.edu	36	X	47193165	47193165	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CXorf26	51260	hgsc.bcm.edu	36	X	75314141	75314141	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CXorf57	55086	hgsc.bcm.edu	36	X	105763136	105763136	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
RBMX	27316	hgsc.bcm.edu	36	X	135785393	135785393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
F8	2157	hgsc.bcm.edu	36	X	153812819	153812819	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
WHSC1	7468	hgsc.bcm.edu	36	4	1950338	1950338	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DOK7	285489	hgsc.bcm.edu	36	4	3448021	3448021	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZCCHC4	29063	hgsc.bcm.edu	36	4	24924813	24924813	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
N4BP2	55728	hgsc.bcm.edu	36	4	39780292	39780292	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PRDM5	11107	hgsc.bcm.edu	36	4	121957440	121957440	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KIAA1109	84162	hgsc.bcm.edu	36	4	123490160	123490160	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FAT4	79633	hgsc.bcm.edu	36	4	126460167	126460167	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FBXW7	55294	hgsc.bcm.edu	36	4	153463542	153463542	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FBXW7	55294	hgsc.bcm.edu	36	4	153468907	153468907	+	Silent	SNP	G	G	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
WWC2	80014	hgsc.bcm.edu	36	4	184447616	184447616	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C2orf63	130162	hgsc.bcm.edu	36	2	55289342	55289342	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
EIF5B	9669	hgsc.bcm.edu	36	2	99344639	99344639	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DPP4	1803	hgsc.bcm.edu	36	2	162589687	162589687	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
LRP2	4036	hgsc.bcm.edu	36	2	169776880	169776880	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
COL3A1	1281	hgsc.bcm.edu	36	2	189547485	189547485	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
RLN2	6019	hgsc.bcm.edu	36	9	5290258	5290258	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TAF1L	138474	hgsc.bcm.edu	36	9	32625359	32625359	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
PCSK5	5125	hgsc.bcm.edu	36	9	77974505	77974505	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
SUSD3	203328	hgsc.bcm.edu	36	9	94880091	94880091	+	Silent	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
RB1	5925	hgsc.bcm.edu	36	13	47935913	47935913	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FGF14	2259	hgsc.bcm.edu	36	13	101851899	101851899	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TFDP1	7027	hgsc.bcm.edu	36	13	113336855	113336855	+	Silent	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ANKRD30A	91074	hgsc.bcm.edu	36	10	37491770	37491770	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ANKRD30A	91074	hgsc.bcm.edu	36	10	37526222	37526222	+	Silent	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ANKRD30A	91074	hgsc.bcm.edu	36	10	37546763	37546763	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF33A	7581	hgsc.bcm.edu	36	10	38385277	38385277	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF33B	7582	hgsc.bcm.edu	36	10	42408570	42408570	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF33B	7582	hgsc.bcm.edu	36	10	42408592	42408592	+	Silent	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF32	7580	hgsc.bcm.edu	36	10	43460154	43460154	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
XPNPEP1	7511	hgsc.bcm.edu	36	10	111630653	111630653	+	Silent	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
EIF3A	8661	hgsc.bcm.edu	36	10	120786629	120786629	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
FGFR2	2263	hgsc.bcm.edu	36	10	123264764	123264764	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CDH9	1007	hgsc.bcm.edu	36	5	27024109	27024109	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ERBB2IP	55914	hgsc.bcm.edu	36	5	65378115	65378115	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
APC	324	hgsc.bcm.edu	36	5	112202016	112202016	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
APC	324	hgsc.bcm.edu	36	5	112203406	112203406	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
GABRG2	2566	hgsc.bcm.edu	36	5	161463608	161463608	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
OR2V2	285659	hgsc.bcm.edu	36	5	180514913	180514913	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
NF2	4771	hgsc.bcm.edu	36	22	28384254	28384254	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
BTN3A2	11118	hgsc.bcm.edu	36	6	26476384	26476384	+	Splice_Site	SNP	G	G	A	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ZNF717	100131827	hgsc.bcm.edu	36	3	75869005	75869013	+	In_Frame_Del	DEL	CTACATTCT	CTACATTCT	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	CTACATTCT	CTACATTCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CPNE4	131034	hgsc.bcm.edu	36	3	132783153	132783155	+	In_Frame_Del	DEL	TTC	TTC	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	TTC	TTC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
CRIPAK	285464	hgsc.bcm.edu	36	4	1378594	1378622	+	Frame_Shift_Del	DEL	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
APC	324	hgsc.bcm.edu	36	5	112202016	112202016	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DEF6	50619	hgsc.bcm.edu	36	6	35397158	35397158	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C12orf48	55010	hgsc.bcm.edu	36	12	101100524	101100524	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ORAI1	84876	hgsc.bcm.edu	36	12	120549157	120549162	+	In_Frame_Del	DEL	CCGCCA	CCGCCA	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	CCGCCA	CCGCCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
ADAMTS18	170692	hgsc.bcm.edu	36	16	75917346	75917346	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
C17orf97	400566	hgsc.bcm.edu	36	17	263602	263631	+	Frame_Shift_Del	DEL	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	AACCCCGAGGCCCTCAAGGGCTTCCACCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TP53	7157	hgsc.bcm.edu	36	17	7518228	7518228	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
TXNDC2	84203	hgsc.bcm.edu	36	18	9877389	9877433	+	In_Frame_Del	DEL	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA	GAAGCCATCCAGCCCAAGGAGGGTGACATCCCCAAGTCCCCAGAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
DEFB126	81623	hgsc.bcm.edu	36	20	74311	74312	+	Frame_Shift_Del	DEL	CC	CC	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
KRTAP19-6	337973	hgsc.bcm.edu	36	21	30835853	30835853	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
NEFH	4744	hgsc.bcm.edu	36	22	28215584	28215585	+	In_Frame_Ins	INS	-	-	CAAGTCCCCTGAGAAGGC	novel	unknown	TCGA-A6-6142-01A-11D-1771-10	TCGA-A6-6142-10A-01D-1771-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	a6ef4d4b-5c28-491f-8a07-0c304e13f93d	466f5234-597e-4364-98af-4760e87f52ff
