Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
DNAH11	8701	hgsc.bcm.edu	36	7	21565747	21565747	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GLI3	2737	hgsc.bcm.edu	36	7	41973844	41973844	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HIP1	3092	hgsc.bcm.edu	36	7	75027077	75027077	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CACNA2D1	781	hgsc.bcm.edu	36	7	81450570	81450570	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SEMA3D	223117	hgsc.bcm.edu	36	7	84474170	84474170	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
LMTK2	22853	hgsc.bcm.edu	36	7	97660786	97660786	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GRM8	2918	hgsc.bcm.edu	36	7	126533857	126533857	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CSNK2A1	1459	hgsc.bcm.edu	36	20	415091	415091	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ATRN	8455	hgsc.bcm.edu	36	20	3532844	3532844	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
RIMS4	140730	hgsc.bcm.edu	36	20	42818216	42818216	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KCNQ2	3785	hgsc.bcm.edu	36	20	61546615	61546615	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
OR11G2	390439	hgsc.bcm.edu	36	14	19735738	19735738	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
OSGEP	55644	hgsc.bcm.edu	36	14	19985499	19985499	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ISCA2	122961	hgsc.bcm.edu	36	14	74031412	74031412	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
NRXN3	9369	hgsc.bcm.edu	36	14	78250879	78250879	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PCDH11Y	83259	hgsc.bcm.edu	36	Y	5027288	5027288	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MUC16	94025	hgsc.bcm.edu	36	19	8945359	8945359	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CD97	976	hgsc.bcm.edu	36	19	14360599	14360599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HPN	3249	hgsc.bcm.edu	36	19	40242668	40242668	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ZNF569	148266	hgsc.bcm.edu	36	19	42596910	42596910	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TRAPPC6A	79090	hgsc.bcm.edu	36	19	50359073	50359073	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
LIG1	26018	hgsc.bcm.edu	36	19	53348953	53348953	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PEG3	5178	hgsc.bcm.edu	36	19	62019790	62019790	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CSGALNACT1	55790	hgsc.bcm.edu	36	8	19307728	19307728	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ENTPD4	9583	hgsc.bcm.edu	36	8	23361193	23361193	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ADRB3	155	hgsc.bcm.edu	36	8	37942905	37942905	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
WWP1	11059	hgsc.bcm.edu	36	8	87529764	87529764	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
EPPK1	83481	hgsc.bcm.edu	36	8	145014056	145014056	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TRIT1	54802	hgsc.bcm.edu	36	1	40082828	40082828	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DAB1	115209	hgsc.bcm.edu	36	1	57249421	57249421	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
LRRC7	57554	hgsc.bcm.edu	36	1	70224531	70224531	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MAN1A2	10905	hgsc.bcm.edu	36	1	117843581	117843581	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
NES	10763	hgsc.bcm.edu	36	1	154908965	154908965	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MNDA	4332	hgsc.bcm.edu	36	1	157078755	157078755	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
C1orf129	80133	hgsc.bcm.edu	36	1	169231275	169231275	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KIF14	9928	hgsc.bcm.edu	36	1	198789432	198789432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CD34	947	hgsc.bcm.edu	36	1	206128673	206128673	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
USH2A	7399	hgsc.bcm.edu	36	1	214238914	214238914	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
OR52B4	143496	hgsc.bcm.edu	36	11	4345190	4345190	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PHF21A	51317	hgsc.bcm.edu	36	11	45949447	45949447	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MADD	8567	hgsc.bcm.edu	36	11	47301803	47301803	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SUV420H1	51111	hgsc.bcm.edu	36	11	67695121	67695121	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
RSF1	51773	hgsc.bcm.edu	36	11	77090162	77090162	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TRIM49	57093	hgsc.bcm.edu	36	11	89171326	89171326	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HEPHL1	341208	hgsc.bcm.edu	36	11	93443273	93443273	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MFRP	83552	hgsc.bcm.edu	36	11	118720653	118720653	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
OR8B8	26493	hgsc.bcm.edu	36	11	123815435	123815435	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TMEM14B	81853	hgsc.bcm.edu	36	6	10859437	10859437	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HIST1H1C	3006	hgsc.bcm.edu	36	6	26164309	26164309	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
OR12D3	81797	hgsc.bcm.edu	36	6	29450706	29450706	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PSMB8	5696	hgsc.bcm.edu	36	6	32920036	32920036	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HS3ST5	222537	hgsc.bcm.edu	36	6	114485948	114485948	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
BCLAF1	9774	hgsc.bcm.edu	36	6	136639004	136639004	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SYNE1	23345	hgsc.bcm.edu	36	6	152518842	152518842	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KIF18B	146909	hgsc.bcm.edu	36	17	40366857	40366857	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
POLG2	11232	hgsc.bcm.edu	36	17	59923016	59923016	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ABCA6	23460	hgsc.bcm.edu	36	17	64643966	64643966	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
NCAM2	4685	hgsc.bcm.edu	36	21	21629820	21629820	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KRTAP26-1	388818	hgsc.bcm.edu	36	21	30614171	30614171	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
COL6A1	1291	hgsc.bcm.edu	36	21	46242103	46242103	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
HPR	3250	hgsc.bcm.edu	36	16	70667960	70667960	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DCLK3	85443	hgsc.bcm.edu	36	3	36738050	36738050	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GOLGA4	2803	hgsc.bcm.edu	36	3	37343089	37343089	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ZNF35	7584	hgsc.bcm.edu	36	3	44676186	44676186	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DNAH1	25981	hgsc.bcm.edu	36	3	52375876	52375876	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DNAH12	201625	hgsc.bcm.edu	36	3	57450364	57450364	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MAGI1	154043	hgsc.bcm.edu	36	3	65340142	65340142	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
UBA3	9039	hgsc.bcm.edu	36	3	69193969	69193969	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
WDR5B	54554	hgsc.bcm.edu	36	3	123616202	123616202	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
IFT122	55764	hgsc.bcm.edu	36	3	130697048	130697048	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PIK3CA	5290	hgsc.bcm.edu	36	3	180404261	180404261	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PIK3CA	5290	hgsc.bcm.edu	36	3	180434784	180434784	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
RIMKLB	57494	hgsc.bcm.edu	36	12	8793938	8793938	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PRB3	5544	hgsc.bcm.edu	36	12	11311784	11311784	+	Silent	SNP	C	C	T	rs12368171	by2Hit2Allele	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MLL2	9757	hgsc.bcm.edu	36	12	47722795	47722795	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KRT73	319101	hgsc.bcm.edu	36	12	51296292	51296292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PLXNC1	10154	hgsc.bcm.edu	36	12	93197484	93197484	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TAOK3	51347	hgsc.bcm.edu	36	12	117103747	117103747	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FBN1	2200	hgsc.bcm.edu	36	15	46572049	46572049	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
UNC13C	440279	hgsc.bcm.edu	36	15	52634952	52634952	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
IL16	3603	hgsc.bcm.edu	36	15	79383015	79383015	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TCEAL2	140597	hgsc.bcm.edu	36	X	101268587	101268587	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KDR	3791	hgsc.bcm.edu	36	4	55675917	55675917	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SMR3A	26952	hgsc.bcm.edu	36	4	71267101	71267101	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ADAMTS3	9508	hgsc.bcm.edu	36	4	73633400	73633400	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GRID2	2895	hgsc.bcm.edu	36	4	94596070	94596070	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
APOB	338	hgsc.bcm.edu	36	2	21083481	21083481	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MAP4K3	8491	hgsc.bcm.edu	36	2	39406908	39406908	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ZC3H6	376940	hgsc.bcm.edu	36	2	112790619	112790619	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DDX18	8886	hgsc.bcm.edu	36	2	118295925	118295925	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
LRP1B	53353	hgsc.bcm.edu	36	2	140809710	140809710	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GALNT13	117248	hgsc.bcm.edu	36	2	154509379	154509379	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FAP	11146	hgsc.bcm.edu	36	2	162782769	162782769	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CASP8	841	hgsc.bcm.edu	36	2	201839478	201839478	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KLF7	8609	hgsc.bcm.edu	36	2	207654205	207654205	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ABCA12	26154	hgsc.bcm.edu	36	2	215592625	215592625	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TMEM169	92691	hgsc.bcm.edu	36	2	216673041	216673041	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
IFNA5	3442	hgsc.bcm.edu	36	9	21294928	21294928	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MCART1	92014	hgsc.bcm.edu	36	9	37878378	37878378	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CEP78	84131	hgsc.bcm.edu	36	9	80051510	80051510	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MUSK	4593	hgsc.bcm.edu	36	9	112549778	112549778	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
C9orf84	158401	hgsc.bcm.edu	36	9	113516623	113516623	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
DIAPH3	81624	hgsc.bcm.edu	36	13	59305280	59305280	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KIAA0913	23053	hgsc.bcm.edu	36	10	75221711	75221711	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PTEN	5728	hgsc.bcm.edu	36	10	89682838	89682838	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FGFR2	2263	hgsc.bcm.edu	36	10	123237537	123237537	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FGFR2	2263	hgsc.bcm.edu	36	10	123300811	123300811	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CDC20B	166979	hgsc.bcm.edu	36	5	54478342	54478342	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GPBP1	65056	hgsc.bcm.edu	36	5	56582700	56582700	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TNPO1	3842	hgsc.bcm.edu	36	5	72187433	72187433	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GPR98	84059	hgsc.bcm.edu	36	5	90024194	90024194	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
APC	324	hgsc.bcm.edu	36	5	112203365	112203365	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
TRIM36	55521	hgsc.bcm.edu	36	5	114497487	114497487	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
AP3S1	1176	hgsc.bcm.edu	36	5	115276990	115276990	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
ANKHD1	54882	hgsc.bcm.edu	36	5	139872664	139872664	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PCDHA4	56144	hgsc.bcm.edu	36	5	140168201	140168201	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PCDHA13	56136	hgsc.bcm.edu	36	5	140243390	140243390	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
JAKMIP2	9832	hgsc.bcm.edu	36	5	147020885	147020885	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FAF2	23197	hgsc.bcm.edu	36	5	175853834	175853834	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SPTLC3	55304	hgsc.bcm.edu	36	20	13055237	13055237	+	Splice_Site	SNP	G	G	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
A2ML1	144568	hgsc.bcm.edu	36	12	8904820	8904820	+	Splice_Site	SNP	T	T	G	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
RASEF	158158	hgsc.bcm.edu	36	9	84801745	84801745	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CRIPAK	285464	hgsc.bcm.edu	36	4	1378594	1378622	+	Frame_Shift_Del	DEL	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	CACGTGCCCATGTGGAGTGCCCGCCTGCT	CACGTGCCCATGTGGAGTGCCCGCCTGCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
FAM81B	153643	hgsc.bcm.edu	36	5	94752886	94752887	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
CDC5L	988	hgsc.bcm.edu	36	6	44482091	44482092	+	Frame_Shift_Ins	INS	-	-	C	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
EYS	346007	hgsc.bcm.edu	36	6	65074937	65074938	+	Frame_Shift_Del	DEL	GA	GA	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
SSPO	23145	hgsc.bcm.edu	36	7	149146122	149146122	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MUC6	4588	hgsc.bcm.edu	36	11	1008089	1008089	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
MUC6	4588	hgsc.bcm.edu	36	11	1008093	1008094	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
KRTAP5-4	387267	hgsc.bcm.edu	36	11	1599622	1599651	+	In_Frame_Del	DEL	GAGACACAGCCCCCCTTGGAACCCCCACAA	GAGACACAGCCCCCCTTGGAACCCCCACAA	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	GAGACACAGCCCCCCTTGGAACCCCCACAA	GAGACACAGCCCCCCTTGGAACCCCCACAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
PTPRQ	374462	hgsc.bcm.edu	36	12	79467637	79467654	+	In_Frame_Del	DEL	TGAAACAGGTAACTAACG	TGAAACAGGTAACTAACG	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	TGAAACAGGTAACTAACG	TGAAACAGGTAACTAACG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
C17orf97	400566	hgsc.bcm.edu	36	17	263602	263631	+	Frame_Shift_Del	DEL	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	AACCCCGAGGCCCTCAAGGGCTTCCACCCT	AACCCCGAGGCCCTCAAGGGCTTCCACCCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
GNAS	2778	hgsc.bcm.edu	36	20	56848938	56848961	+	In_Frame_Del	DEL	GAGCCTGAGACCGCCCCCACCACT	GAGCCTGAGACCGCCCCCACCACT	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	GAGCCTGAGACCGCCCCCACCACT	GAGCCTGAGACCGCCCCCACCACT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
VCX3B	425054	hgsc.bcm.edu	36	X	8394047	8394076	+	In_Frame_Del	DEL	GAACCACTGAGTCAGGAGAGCCAGGTGGAG	GAACCACTGAGTCAGGAGAGCCAGGTGGAG	-	novel	unknown	TCGA-AA-3489-01A-21D-1835-10	TCGA-AA-3489-11A-01D-1835-10	GAACCACTGAGTCAGGAGAGCCAGGTGGAG	GAACCACTGAGTCAGGAGAGCCAGGTGGAG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	d4170db4-1dec-404f-b960-5b862a5c7227	f96c8ce3-4857-4e32-b4a8-12db8fabec0e
