Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_File	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID
CARD11	84433	hgsc.bcm.edu	36	7	2946041	2946041	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SDK1	221935	hgsc.bcm.edu	36	7	4083191	4083191	+	Missense_Mutation	SNP	G	G	A	rs11978101	by2Hit2Allele;byCluster;byFrequency;byHapMap	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RNF216	54476	hgsc.bcm.edu	36	7	5747130	5747130	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RPA3	6119	hgsc.bcm.edu	36	7	7645249	7645249	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DNAH11	8701	hgsc.bcm.edu	36	7	21642062	21642062	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GPNMB	10457	hgsc.bcm.edu	36	7	23272679	23272679	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
HERPUD2	64224	hgsc.bcm.edu	36	7	35676413	35676413	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF92	168374	hgsc.bcm.edu	36	7	64501472	64501472	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MAGI2	9863	hgsc.bcm.edu	36	7	77723395	77723395	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCLO	27445	hgsc.bcm.edu	36	7	82346672	82346672	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SAMD9L	219285	hgsc.bcm.edu	36	7	92599292	92599292	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SAMD9L	219285	hgsc.bcm.edu	36	7	92601455	92601455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TRRAP	8295	hgsc.bcm.edu	36	7	98383826	98383826	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF3	7551	hgsc.bcm.edu	36	7	99500455	99500455	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CUX1	1523	hgsc.bcm.edu	36	7	101631517	101631517	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDHR3	0	hgsc.bcm.edu	36	7	105429210	105429210	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NAMPT	10135	hgsc.bcm.edu	36	7	105696916	105696916	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LRRN3	54674	hgsc.bcm.edu	36	7	110550475	110550475	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTPRZ1	5803	hgsc.bcm.edu	36	7	121482280	121482280	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RBM28	55131	hgsc.bcm.edu	36	7	127763246	127763246	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SSPO	23145	hgsc.bcm.edu	36	7	149131020	149131020	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ABCF2	10061	hgsc.bcm.edu	36	7	150543077	150543077	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLL3	58508	hgsc.bcm.edu	36	7	151495264	151495264	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLL3	58508	hgsc.bcm.edu	36	7	151510057	151510057	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLL3	58508	hgsc.bcm.edu	36	7	151510162	151510162	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLL3	58508	hgsc.bcm.edu	36	7	151527441	151527441	+	Nonsense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLL3	58508	hgsc.bcm.edu	36	7	151593201	151593201	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ESF1	51575	hgsc.bcm.edu	36	20	13711610	13711610	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C20orf12	55184	hgsc.bcm.edu	36	20	18344061	18344061	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NCOA6	23054	hgsc.bcm.edu	36	20	32766817	32766817	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CHD6	84181	hgsc.bcm.edu	36	20	39545471	39545471	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CHD6	84181	hgsc.bcm.edu	36	20	39574944	39574944	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CYP24A1	1591	hgsc.bcm.edu	36	20	52207141	52207141	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SPO11	23626	hgsc.bcm.edu	36	20	55341667	55341667	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OGFR	11054	hgsc.bcm.edu	36	20	60914211	60914211	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PRPF6	24148	hgsc.bcm.edu	36	20	62086742	62086742	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CABIN1	23523	hgsc.bcm.edu	36	22	22817540	22817540	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MICALL1	85377	hgsc.bcm.edu	36	22	36663107	36663107	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
POTEG	404785	hgsc.bcm.edu	36	14	18623822	18623822	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CHD8	57680	hgsc.bcm.edu	36	14	20940064	20940064	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COCH	1690	hgsc.bcm.edu	36	14	30424417	30424417	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AKAP6	9472	hgsc.bcm.edu	36	14	32271502	32271502	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LRFN5	145581	hgsc.bcm.edu	36	14	41426912	41426912	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATL1	51062	hgsc.bcm.edu	36	14	50157167	50157167	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FAM71D	161142	hgsc.bcm.edu	36	14	66739655	66739655	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FAM161B	145483	hgsc.bcm.edu	36	14	73478855	73478855	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MLH3	27030	hgsc.bcm.edu	36	14	74584313	74584313	+	Missense_Mutation	SNP	C	C	T	rs28756984	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ESRRB	2103	hgsc.bcm.edu	36	14	76036066	76036066	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA1409	57578	hgsc.bcm.edu	36	14	93129916	93129916	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
STK11	6794	hgsc.bcm.edu	36	19	1158117	1158117	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TMEM146	257062	hgsc.bcm.edu	36	19	5729437	5729437	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LPHN1	22859	hgsc.bcm.edu	36	19	14127221	14127221	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF93	81931	hgsc.bcm.edu	36	19	19905862	19905862	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PDCD5	9141	hgsc.bcm.edu	36	19	37768650	37768650	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF585A	199704	hgsc.bcm.edu	36	19	42335089	42335089	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PRX	57716	hgsc.bcm.edu	36	19	45594115	45594115	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF235	9310	hgsc.bcm.edu	36	19	49495665	49495665	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BCL3	602	hgsc.bcm.edu	36	19	49954630	49954630	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIR2DL3	3804	hgsc.bcm.edu	36	19	59950648	59950648	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIR3DP1	768329	hgsc.bcm.edu	36	19	59991468	59991468	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
EPS8L1	54869	hgsc.bcm.edu	36	19	60289599	60289599	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ARHGEF10	9639	hgsc.bcm.edu	36	8	1812216	1812216	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RP1L1	94137	hgsc.bcm.edu	36	8	10506035	10506035	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GFRA2	2675	hgsc.bcm.edu	36	8	21652476	21652476	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PXDNL	137902	hgsc.bcm.edu	36	8	52483531	52483531	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RB1CC1	9821	hgsc.bcm.edu	36	8	53749202	53749202	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RP1	10982	hgsc.bcm.edu	36	8	55699974	55699974	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C8orf45	157777	hgsc.bcm.edu	36	8	67952152	67952152	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LACTB2	51110	hgsc.bcm.edu	36	8	71715798	71715798	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CNGB3	54714	hgsc.bcm.edu	36	8	87748382	87748382	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RUNX1T1	862	hgsc.bcm.edu	36	8	93067650	93067650	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDH17	1015	hgsc.bcm.edu	36	8	95227396	95227396	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDH17	1015	hgsc.bcm.edu	36	8	95255612	95255612	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA1429	25962	hgsc.bcm.edu	36	8	95573203	95573203	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
VPS13B	157680	hgsc.bcm.edu	36	8	100901345	100901345	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR4F5	79501	hgsc.bcm.edu	36	1	59402	59402	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA1751	85452	hgsc.bcm.edu	36	1	1890034	1890034	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CASP9	842	hgsc.bcm.edu	36	1	15717287	15717287	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA0090	23065	hgsc.bcm.edu	36	1	19442764	19442764	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ARID1A	8289	hgsc.bcm.edu	36	1	26978137	26978137	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CLSPN	63967	hgsc.bcm.edu	36	1	35998743	35998743	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SPATA6	54558	hgsc.bcm.edu	36	1	48593978	48593978	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C1orf141	400757	hgsc.bcm.edu	36	1	67331662	67331662	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C1orf141	400757	hgsc.bcm.edu	36	1	67331867	67331867	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C1orf173	127254	hgsc.bcm.edu	36	1	74828284	74828284	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MCOLN2	255231	hgsc.bcm.edu	36	1	85194703	85194703	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GTF2B	2959	hgsc.bcm.edu	36	1	89098422	89098422	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDC7	8317	hgsc.bcm.edu	36	1	91746067	91746067	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SNX7	51375	hgsc.bcm.edu	36	1	98929308	98929308	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NBPF7	343505	hgsc.bcm.edu	36	1	120183351	120183351	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GJA8	2703	hgsc.bcm.edu	36	1	145847876	145847876	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FLG	2312	hgsc.bcm.edu	36	1	150547823	150547823	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FLG	2312	hgsc.bcm.edu	36	1	150549929	150549929	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FLG	2312	hgsc.bcm.edu	36	1	150553541	150553541	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FLG2	388698	hgsc.bcm.edu	36	1	150591311	150591311	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GBA	2629	hgsc.bcm.edu	36	1	153474660	153474660	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CD1A	913	hgsc.bcm.edu	36	1	156491535	156491535	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CD1B	910	hgsc.bcm.edu	36	1	156567364	156567364	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COPA	1314	hgsc.bcm.edu	36	1	158535564	158535564	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SLAMF1	6504	hgsc.bcm.edu	36	1	158873630	158873630	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
F5	2153	hgsc.bcm.edu	36	1	167796585	167796585	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ASTN1	460	hgsc.bcm.edu	36	1	175193454	175193454	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ANGPTL1	9068	hgsc.bcm.edu	36	1	177100919	177100919	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TOR1AIP1	26092	hgsc.bcm.edu	36	1	178120507	178120507	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TPR	7175	hgsc.bcm.edu	36	1	184586125	184586125	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CAMSAP1L1	23271	hgsc.bcm.edu	36	1	198996694	198996694	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIF21B	23046	hgsc.bcm.edu	36	1	199239430	199239430	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SYT2	127833	hgsc.bcm.edu	36	1	200835043	200835043	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KLHDC8A	55220	hgsc.bcm.edu	36	1	203578987	203578987	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LAMB3	3914	hgsc.bcm.edu	36	1	207866868	207866868	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
HEATR1	55127	hgsc.bcm.edu	36	1	234823964	234823964	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AHCTF1	25909	hgsc.bcm.edu	36	1	245137666	245137666	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TRIM58	25893	hgsc.bcm.edu	36	1	246090614	246090614	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR52A1	23538	hgsc.bcm.edu	36	11	5129805	5129805	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR51B2	79345	hgsc.bcm.edu	36	11	5301308	5301308	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SBF2	81846	hgsc.bcm.edu	36	11	9820781	9820781	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PIK3C2A	5286	hgsc.bcm.edu	36	11	17098009	17098009	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PIK3C2A	5286	hgsc.bcm.edu	36	11	17128749	17128749	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KCNA4	3739	hgsc.bcm.edu	36	11	29990316	29990316	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CAPRIN1	4076	hgsc.bcm.edu	36	11	34054721	34054721	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTPRJ	5795	hgsc.bcm.edu	36	11	48108761	48108761	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR4A5	81318	hgsc.bcm.edu	36	11	51268333	51268333	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR5AK2	390181	hgsc.bcm.edu	36	11	56513361	56513361	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MS4A5	64232	hgsc.bcm.edu	36	11	59957858	59957858	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DDB1	1642	hgsc.bcm.edu	36	11	60834357	60834357	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AHNAK	79026	hgsc.bcm.edu	36	11	62050499	62050499	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA1731	85459	hgsc.bcm.edu	36	11	93071559	93071559	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATM	472	hgsc.bcm.edu	36	11	107628762	107628762	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATM	472	hgsc.bcm.edu	36	11	107710979	107710979	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ALG9	79796	hgsc.bcm.edu	36	11	111216724	111216724	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GPLD1	2822	hgsc.bcm.edu	36	6	24588128	24588128	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TRIM26	7726	hgsc.bcm.edu	36	6	30261695	30261695	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DST	667	hgsc.bcm.edu	36	6	56613210	56613210	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
EYS	346007	hgsc.bcm.edu	36	6	66261844	66261844	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C6orf150	115004	hgsc.bcm.edu	36	6	74218022	74218022	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FILIP1	27145	hgsc.bcm.edu	36	6	76080273	76080273	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
EPHA7	2045	hgsc.bcm.edu	36	6	94123204	94123204	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PREP	5550	hgsc.bcm.edu	36	6	105843335	105843335	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AKD1	221264	hgsc.bcm.edu	36	6	110102103	110102103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ROS1	6098	hgsc.bcm.edu	36	6	117746108	117746108	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C6orf204	387119	hgsc.bcm.edu	36	6	118939219	118939219	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C6orf170	221322	hgsc.bcm.edu	36	6	121680381	121680381	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NCOA7	135112	hgsc.bcm.edu	36	6	126278188	126278188	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FAM54A	113115	hgsc.bcm.edu	36	6	136596320	136596320	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TNFAIP3	7128	hgsc.bcm.edu	36	6	138237802	138237802	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SYNE1	23345	hgsc.bcm.edu	36	6	152753116	152753116	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MYBBP1A	10514	hgsc.bcm.edu	36	17	4395715	4395715	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ALOX15	246	hgsc.bcm.edu	36	17	4485908	4485908	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FXR2	9513	hgsc.bcm.edu	36	17	7438752	7438752	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ALOX12B	242	hgsc.bcm.edu	36	17	7931405	7931405	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DNAH9	1770	hgsc.bcm.edu	36	17	11583006	11583006	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TOP3A	7156	hgsc.bcm.edu	36	17	18149181	18149181	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CCDC144NL	339184	hgsc.bcm.edu	36	17	20710571	20710571	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
VTN	7448	hgsc.bcm.edu	36	17	23718606	23718606	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RHBDL3	162494	hgsc.bcm.edu	36	17	27649234	27649234	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SYNRG	0	hgsc.bcm.edu	36	17	32976326	32976326	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SRCIN1	0	hgsc.bcm.edu	36	17	33969433	33969433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TOP2A	7153	hgsc.bcm.edu	36	17	35799367	35799367	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KCNH4	23415	hgsc.bcm.edu	36	17	37581710	37581710	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AOC3	8639	hgsc.bcm.edu	36	17	38261010	38261010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BRCA1	672	hgsc.bcm.edu	36	17	38509760	38509760	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COL1A1	1277	hgsc.bcm.edu	36	17	45630129	45630129	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR4D2	124538	hgsc.bcm.edu	36	17	53602704	53602704	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LPO	4025	hgsc.bcm.edu	36	17	53697271	53697271	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DNAH17	8632	hgsc.bcm.edu	36	17	74008875	74008875	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
HGS	9146	hgsc.bcm.edu	36	17	77263776	77263776	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C21orf29	54084	hgsc.bcm.edu	36	21	44778095	44778095	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FTCD	10841	hgsc.bcm.edu	36	21	46381599	46381599	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CRAMP1L	57585	hgsc.bcm.edu	36	16	1616156	1616156	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ABCA3	21	hgsc.bcm.edu	36	16	2316025	2316025	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PRKCB	5579	hgsc.bcm.edu	36	16	24133520	24133520	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ITGAX	3687	hgsc.bcm.edu	36	16	31282135	31282135	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CBLN1	869	hgsc.bcm.edu	36	16	47872400	47872400	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF423	23090	hgsc.bcm.edu	36	16	48228345	48228345	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CYLD	1540	hgsc.bcm.edu	36	16	49345788	49345788	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CETP	1071	hgsc.bcm.edu	36	16	55569610	55569610	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDH11	1009	hgsc.bcm.edu	36	16	63573565	63573565	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CDH11	1009	hgsc.bcm.edu	36	16	63573566	63573566	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SDR42E1	93517	hgsc.bcm.edu	36	16	80591311	80591311	+	Nonsense_Mutation	SNP	G	G	A	rs11542462	byCluster;byFrequency;byHapMap	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DEF8	54849	hgsc.bcm.edu	36	16	88555967	88555967	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LOXHD1	125336	hgsc.bcm.edu	36	18	42426474	42426474	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SMAD4	4089	hgsc.bcm.edu	36	18	46858693	46858693	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DCC	1630	hgsc.bcm.edu	36	18	49230896	49230896	+	Silent	SNP	G	G	A	rs35891220	byFrequency	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ITPR1	3708	hgsc.bcm.edu	36	3	4687501	4687501	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LHFPL4	375612	hgsc.bcm.edu	36	3	9569238	9569238	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SCN5A	6331	hgsc.bcm.edu	36	3	38614275	38614275	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CTNNB1	1499	hgsc.bcm.edu	36	3	41241157	41241157	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CTNNB1	1499	hgsc.bcm.edu	36	3	41242066	41242066	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RAD54L2	23132	hgsc.bcm.edu	36	3	51654808	51654808	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SNTN	132203	hgsc.bcm.edu	36	3	63624747	63624747	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF717	100131827	hgsc.bcm.edu	36	3	75869849	75869849	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MINA	84864	hgsc.bcm.edu	36	3	99163126	99163126	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR5H1	26341	hgsc.bcm.edu	36	3	99334597	99334597	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SENP7	57337	hgsc.bcm.edu	36	3	102563273	102563273	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CCDC80	151887	hgsc.bcm.edu	36	3	113807111	113807111	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CD200R1	131450	hgsc.bcm.edu	36	3	114130815	114130815	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ARHGAP31	0	hgsc.bcm.edu	36	3	120603444	120603444	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ARHGAP31	0	hgsc.bcm.edu	36	3	120603595	120603595	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COL6A5	256076	hgsc.bcm.edu	36	3	131599584	131599584	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PRR23C	0	hgsc.bcm.edu	36	3	140245778	140245778	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATR	390502	hgsc.bcm.edu	36	3	143709594	143709594	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PLS1	5357	hgsc.bcm.edu	36	3	143887833	143887833	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
P2RY13	53829	hgsc.bcm.edu	36	3	152528598	152528598	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MED12L	116931	hgsc.bcm.edu	36	3	152560984	152560984	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PIK3CA	5290	hgsc.bcm.edu	36	3	180434781	180434781	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LAMP3	27074	hgsc.bcm.edu	36	3	184354446	184354446	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IQSEC3	440073	hgsc.bcm.edu	36	12	118698	118698	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
WNK1	65125	hgsc.bcm.edu	36	12	862929	862929	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CLEC1A	51267	hgsc.bcm.edu	36	12	10125203	10125203	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PRB3	5544	hgsc.bcm.edu	36	12	11312863	11312863	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PLEKHA5	54477	hgsc.bcm.edu	36	12	19402562	19402562	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCBP2	5094	hgsc.bcm.edu	36	12	52135963	52135963	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CRADD	8738	hgsc.bcm.edu	36	12	92596746	92596746	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MVK	4598	hgsc.bcm.edu	36	12	108517257	108517257	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RYR3	6263	hgsc.bcm.edu	36	15	31680948	31680948	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZFP106	64397	hgsc.bcm.edu	36	15	40529814	40529814	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SLC12A1	6557	hgsc.bcm.edu	36	15	46321008	46321008	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GABPB1	8327	hgsc.bcm.edu	36	15	48389195	48389195	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DMXL2	23312	hgsc.bcm.edu	36	15	49617140	49617140	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
UNC13C	440279	hgsc.bcm.edu	36	15	52093970	52093970	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
HERC1	8925	hgsc.bcm.edu	36	15	61754009	61754009	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NR2E3	10002	hgsc.bcm.edu	36	15	69892797	69892797	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GOLGA6A	0	hgsc.bcm.edu	36	15	72152146	72152146	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LINGO1	84894	hgsc.bcm.edu	36	15	75695036	75695036	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BNC1	646	hgsc.bcm.edu	36	15	81726708	81726708	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ADAMTSL3	57188	hgsc.bcm.edu	36	15	82233332	82233332	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IQGAP1	8826	hgsc.bcm.edu	36	15	88820976	88820976	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SV2B	9899	hgsc.bcm.edu	36	15	89625984	89625984	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PGPEP1L	0	hgsc.bcm.edu	36	15	97330289	97330289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MXRA5	25878	hgsc.bcm.edu	36	X	3238183	3238183	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NLGN4X	57502	hgsc.bcm.edu	36	X	5837266	5837266	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF645	158506	hgsc.bcm.edu	36	X	22202058	22202058	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CXorf22	170063	hgsc.bcm.edu	36	X	35854142	35854142	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CXorf59	286464	hgsc.bcm.edu	36	X	36001370	36001370	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
XAGE5	170627	hgsc.bcm.edu	36	X	52858359	52858359	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DLG3	4356	hgsc.bcm.edu	36	X	69629150	69629150	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA2022	340533	hgsc.bcm.edu	36	X	73882147	73882147	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NRK	203447	hgsc.bcm.edu	36	X	105043323	105043323	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TBC1D8B	54885	hgsc.bcm.edu	36	X	105950875	105950875	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RBM41	55285	hgsc.bcm.edu	36	X	106218413	106218413	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PSMD10	5716	hgsc.bcm.edu	36	X	107214958	107214958	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ALG13	79868	hgsc.bcm.edu	36	X	110857562	110857562	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
STAG2	10735	hgsc.bcm.edu	36	X	123006783	123006783	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MST4	51765	hgsc.bcm.edu	36	X	131034721	131034721	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GPC3	2719	hgsc.bcm.edu	36	X	132623496	132623496	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
F9	2158	hgsc.bcm.edu	36	X	138458264	138458264	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MAGEA4	4104	hgsc.bcm.edu	36	X	150843249	150843249	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MAGEA5	4104	hgsc.bcm.edu	36	X	151034396	151034396	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CSAG1	158511	hgsc.bcm.edu	36	X	151659815	151659815	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PNCK	139728	hgsc.bcm.edu	36	X	152589631	152589631	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCDH7	5099	hgsc.bcm.edu	36	4	30334873	30334873	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
POLR2B	5431	hgsc.bcm.edu	36	4	57560552	57560552	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SLC4A4	8671	hgsc.bcm.edu	36	4	72630962	72630962	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COX18	285521	hgsc.bcm.edu	36	4	74152632	74152632	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CXCL3	2921	hgsc.bcm.edu	36	4	75122715	75122715	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
G3BP2	9908	hgsc.bcm.edu	36	4	76789785	76789785	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NFKB1	4790	hgsc.bcm.edu	36	4	103707267	103707267	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ANK2	287	hgsc.bcm.edu	36	4	114499458	114499458	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SCLT1	132320	hgsc.bcm.edu	36	4	130097693	130097693	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TBC1D9	23158	hgsc.bcm.edu	36	4	141763447	141763447	+	Silent	SNP	G	G	A	rs1560440	by2Hit2Allele;byCluster;byFrequency;byHapMap;byOtherPop	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GYPA	2993	hgsc.bcm.edu	36	4	145257477	145257477	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GRHL1	29841	hgsc.bcm.edu	36	2	10056567	10056567	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ROCK2	9475	hgsc.bcm.edu	36	2	11251859	11251859	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NBAS	51594	hgsc.bcm.edu	36	2	15481953	15481953	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DDX1	1653	hgsc.bcm.edu	36	2	15670836	15670836	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KCNS3	3790	hgsc.bcm.edu	36	2	17976259	17976259	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OTOF	9381	hgsc.bcm.edu	36	2	26555693	26555693	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ALK	238	hgsc.bcm.edu	36	2	29298774	29298774	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MSH2	4436	hgsc.bcm.edu	36	2	47484039	47484039	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MSH2	4436	hgsc.bcm.edu	36	2	47551705	47551705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MSH6	2956	hgsc.bcm.edu	36	2	47880078	47880078	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CCT4	10575	hgsc.bcm.edu	36	2	61953164	61953164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
EHBP1	23301	hgsc.bcm.edu	36	2	62955167	62955167	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BMP10	27302	hgsc.bcm.edu	36	2	68947020	68947020	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ADRA2B	151	hgsc.bcm.edu	36	2	96145237	96145237	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TMEM131	23505	hgsc.bcm.edu	36	2	97758904	97758904	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TMEM131	23505	hgsc.bcm.edu	36	2	97797034	97797034	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ST6GAL2	84620	hgsc.bcm.edu	36	2	106815517	106815517	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GCC2	9648	hgsc.bcm.edu	36	2	108454151	108454151	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IL1F6	27179	hgsc.bcm.edu	36	2	113481916	113481916	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MYO7B	4648	hgsc.bcm.edu	36	2	128105665	128105665	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LRP1B	53353	hgsc.bcm.edu	36	2	140980900	140980900	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NEB	4703	hgsc.bcm.edu	36	2	152070318	152070318	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NEB	4703	hgsc.bcm.edu	36	2	152290292	152290292	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BAZ2B	29994	hgsc.bcm.edu	36	2	159997727	159997727	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SCN2A	6326	hgsc.bcm.edu	36	2	165878863	165878863	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATF2	2668	hgsc.bcm.edu	36	2	175670461	175670461	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TTN	7273	hgsc.bcm.edu	36	2	179107967	179107967	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TTN	7273	hgsc.bcm.edu	36	2	179129970	179129970	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TTN	7273	hgsc.bcm.edu	36	2	179136180	179136180	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CCDC141	285025	hgsc.bcm.edu	36	2	179428503	179428503	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
STAT4	6775	hgsc.bcm.edu	36	2	191630992	191630992	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MYO1B	4430	hgsc.bcm.edu	36	2	191902937	191902937	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GTF3C3	9330	hgsc.bcm.edu	36	2	197348114	197348114	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KCTD18	130535	hgsc.bcm.edu	36	2	201063279	201063279	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZDBF2	57683	hgsc.bcm.edu	36	2	206882682	206882682	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PIKFYVE	200576	hgsc.bcm.edu	36	2	208926972	208926972	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ABCA12	26154	hgsc.bcm.edu	36	2	215562321	215562321	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DOCK10	55619	hgsc.bcm.edu	36	2	225347988	225347988	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
COL4A3	1285	hgsc.bcm.edu	36	2	227819653	227819653	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TAF1L	138474	hgsc.bcm.edu	36	9	32620106	32620106	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CNTNAP3	79937	hgsc.bcm.edu	36	9	39076820	39076820	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GCNT1	2650	hgsc.bcm.edu	36	9	78307984	78307984	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DAPK1	1612	hgsc.bcm.edu	36	9	89486357	89486357	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTCH1	5727	hgsc.bcm.edu	36	9	97269358	97269358	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
KIAA0368	23392	hgsc.bcm.edu	36	9	113253626	113253626	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GAPVD1	26130	hgsc.bcm.edu	36	9	127151528	127151528	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZDHHC20	253832	hgsc.bcm.edu	36	13	20859667	20859667	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BRCA2	675	hgsc.bcm.edu	36	13	31842567	31842567	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PDS5B	23047	hgsc.bcm.edu	36	13	32130409	32130409	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NBEA	26960	hgsc.bcm.edu	36	13	34643583	34643583	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RB1	5925	hgsc.bcm.edu	36	13	47851761	47851761	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RB1	5925	hgsc.bcm.edu	36	13	47928346	47928346	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RB1	5925	hgsc.bcm.edu	36	13	47931918	47931918	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CYSLTR2	57105	hgsc.bcm.edu	36	13	48179935	48179935	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATP7B	540	hgsc.bcm.edu	36	13	51429705	51429705	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCDH20	64881	hgsc.bcm.edu	36	13	60884811	60884811	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SLITRK1	114798	hgsc.bcm.edu	36	13	83352756	83352756	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SLITRK1	114798	hgsc.bcm.edu	36	13	83353110	83353110	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ARHGEF7	8874	hgsc.bcm.edu	36	13	110753384	110753384	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MYO3A	53904	hgsc.bcm.edu	36	10	26486319	26486319	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ERCC6	2074	hgsc.bcm.edu	36	10	50371218	50371218	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCDH15	65217	hgsc.bcm.edu	36	10	55261289	55261289	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ANK3	288	hgsc.bcm.edu	36	10	61504520	61504520	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CTNNA3	29119	hgsc.bcm.edu	36	10	68196126	68196126	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DDX21	54606	hgsc.bcm.edu	36	10	70391887	70391887	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTEN	5728	hgsc.bcm.edu	36	10	89614225	89614225	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTEN	5728	hgsc.bcm.edu	36	10	89682950	89682950	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTEN	5728	hgsc.bcm.edu	36	10	89710708	89710708	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTEN	5728	hgsc.bcm.edu	36	10	89710782	89710782	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PTEN	5728	hgsc.bcm.edu	36	10	89715091	89715091	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF518A	9849	hgsc.bcm.edu	36	10	97908056	97908056	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PDCD11	22984	hgsc.bcm.edu	36	10	105190044	105190044	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PNLIP	5406	hgsc.bcm.edu	36	10	118304727	118304727	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SEC23IP	11196	hgsc.bcm.edu	36	10	121675724	121675724	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PLEKHA1	59338	hgsc.bcm.edu	36	10	124142813	124142813	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
C10orf137	26098	hgsc.bcm.edu	36	10	127399836	127399836	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DOCK1	1793	hgsc.bcm.edu	36	10	128711497	128711497	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IRX1	79192	hgsc.bcm.edu	36	5	3652827	3652827	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
FYB	2533	hgsc.bcm.edu	36	5	39238004	39238004	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PLCXD3	345557	hgsc.bcm.edu	36	5	41418118	41418118	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZSWIM6	57688	hgsc.bcm.edu	36	5	60870480	60870480	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TRIM23	373	hgsc.bcm.edu	36	5	64928100	64928100	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BHMT	635	hgsc.bcm.edu	36	5	78451965	78451965	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ST8SIA4	7903	hgsc.bcm.edu	36	5	100266554	100266554	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
APC	324	hgsc.bcm.edu	36	5	112202557	112202557	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
APC	324	hgsc.bcm.edu	36	5	112202561	112202561	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
APC	324	hgsc.bcm.edu	36	5	112203551	112203551	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MCC	4163	hgsc.bcm.edu	36	5	112467875	112467875	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ANKHD1	54882	hgsc.bcm.edu	36	5	139883946	139883946	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCDHA7	56141	hgsc.bcm.edu	36	5	140196416	140196416	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
PCDHB1	29930	hgsc.bcm.edu	36	5	140413545	140413545	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MDC1	9656	hgsc.bcm.edu	36	6	30779295	30779295	+	Splice_Site	SNP	T	T	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OSTM1	28962	hgsc.bcm.edu	36	6	108477149	108477149	+	Splice_Site	SNP	C	C	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NF1	4763	hgsc.bcm.edu	36	17	26610175	26610175	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IRAK2	3656	hgsc.bcm.edu	36	3	10236363	10236363	+	Splice_Site	SNP	G	G	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DIP2B	57609	hgsc.bcm.edu	36	12	49384188	49384188	+	Splice_Site	SNP	A	A	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
MSH2	4436	hgsc.bcm.edu	36	2	47551707	47551707	+	Splice_Site	SNP	T	T	C	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
IDE	3416	hgsc.bcm.edu	36	10	94240333	94240333	+	Splice_Site	SNP	C	C	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
CLCA1	1179	hgsc.bcm.edu	36	1	86736903	86736906	+	Frame_Shift_Del	DEL	AAGT	AAGT	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	AAGT	AAGT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SPATA3	130560	hgsc.bcm.edu	36	2	231569277	231569303	+	In_Frame_Del	DEL	CAGCAGCCTAGCCCTGAATCCACACCA	CAGCAGCCTAGCCCTGAATCCACACCA	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	CAGCAGCCTAGCCCTGAATCCACACCA	CAGCAGCCTAGCCCTGAATCCACACCA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ZNF717	100131827	hgsc.bcm.edu	36	3	75869005	75869013	+	In_Frame_Del	DEL	CTACATTCT	CTACATTCT	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	CTACATTCT	CTACATTCT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
ATR	390502	hgsc.bcm.edu	36	3	143757430	143757430	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
NDUFAF2	91942	hgsc.bcm.edu	36	5	60404765	60404766	+	Frame_Shift_Del	DEL	TA	TA	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
STK3	8428	hgsc.bcm.edu	36	8	99848722	99848722	+	Frame_Shift_Del	DEL	G	G	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TFAM	7019	hgsc.bcm.edu	36	10	59818576	59818576	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RUFY2	55680	hgsc.bcm.edu	36	10	69826589	69826589	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
DNA2	1763	hgsc.bcm.edu	36	10	69852527	69852527	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR10A4	283297	hgsc.bcm.edu	36	11	6854772	6854773	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
OR6C76	390326	hgsc.bcm.edu	36	12	54107226	54107226	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
LRRIQ1	84125	hgsc.bcm.edu	36	12	84162777	84162777	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
AGBL1	123624	hgsc.bcm.edu	36	15	84608696	84608697	+	Frame_Shift_Ins	INS	-	-	A	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
TP53	7157	hgsc.bcm.edu	36	17	7518319	7518320	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
WFIKKN2	124857	hgsc.bcm.edu	36	17	46272071	46272072	+	Frame_Shift_Ins	INS	-	-	CC	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SPAG9	9043	hgsc.bcm.edu	36	17	46437597	46437598	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
RAD51C	5889	hgsc.bcm.edu	36	17	54127459	54127459	+	Frame_Shift_Del	DEL	C	C	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
BRIP1	83990	hgsc.bcm.edu	36	17	57216530	57216531	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
SMAD4	4089	hgsc.bcm.edu	36	18	46838511	46838512	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
GART	2618	hgsc.bcm.edu	36	21	33803992	33803992	+	Frame_Shift_Del	DEL	T	T	-	novel	unknown	TCGA-AA-3496-01A-21D-1835-10	TCGA-AA-3496-11A-01D-1835-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	502ad6d1-0f33-47d9-bab2-46ef92c8b9b2	5952405f-5f8d-429a-8c5d-d66241863da2
