Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PYROXD2	84795	hgsc.bcm.edu	36	10	100133610	100133610	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032709	exon16	c.G1681A	p.G561S	 C10orf33,central_nervous_system,brain,Substitution - Missense,+1 	.	.
CPN1	1369	hgsc.bcm.edu	36	10	101825804	101825804	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001308	exon2	c.G274C	p.G92R	.	.	.
GBF1	8729	hgsc.bcm.edu	36	10	104125237	104125237	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001199378	exon30	c.G3792T	p.W1264C	.	.	.
OBFC1	79991	hgsc.bcm.edu	36	10	105667311	105667311	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_024928	exon2	c.A32G	p.E11G	.	.	.
C10orf84	63877	hgsc.bcm.edu	36	10	120075676	120075676	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001134672	exon6	c.A523T	p.N175Y	.	.	.
ANKRD16	54522	hgsc.bcm.edu	36	10	5965017	5965017	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001009943	exon5	c.A807T	p.R269S	.	.	.
PRF1	5551	hgsc.bcm.edu	36	10	72027896	72027896	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005041	exon3	c.G1587T	p.L529L	.	.	.
ITIH5	80760	hgsc.bcm.edu	36	10	7661806	7661806	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_030569	exon9	c.C1336T	p.L446L	.	.	.
DYDC1	143241	hgsc.bcm.edu	36	10	82085903	82085903	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_138812	exon8	c.C523A	p.Q175K	.	.	.
SLIT1	6585	hgsc.bcm.edu	36	10	98756373	98756373	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003061	exon32	c.G3436T	p.G1146C	.	.	.
RPUSD4	84881	hgsc.bcm.edu	36	11	125579377	125579377	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032795	exon6	c.G853A	p.G285S	.	.	.
CALCA	796	hgsc.bcm.edu	36	11	14949232	14949232	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001741	exon2	c.T83G	p.F28C	.	.	.
USH1C	10083	hgsc.bcm.edu	36	11	17480089	17480089	+	Nonsense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_153676	exon21	c.T2199G	p.Y733X	.	.	.
USH1C	10083	hgsc.bcm.edu	36	11	17480099	17480099	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_153676	exon21	c.T2189C	p.F730S	.	.	.
NAV2	89797	hgsc.bcm.edu	36	11	20058212	20058212	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001111018	exon25	c.C5014G	p.L1672V	.	.	.
NUP98	4928	hgsc.bcm.edu	36	11	3663976	3663976	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_016320	exon29	c.G4479A	p.L1493L	.	.	.
PEX16	9409	hgsc.bcm.edu	36	11	45892797	45892797	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_057174	exon6	c.C475A	p.P159T	.	.	.
LRP4	4038	hgsc.bcm.edu	36	11	46874084	46874084	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002334	exon10	c.G1110C	p.Q370H	.	.	.
OR10V1	390201	hgsc.bcm.edu	36	11	59237501	59237501	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001005324	exon1	c.C394T	p.R132X	.	.	.
SCGB2A1	4246	hgsc.bcm.edu	36	11	61732794	61732794	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002407	exon1	c.G15A	p.M5I	.	.	.
CHRM1	1128	hgsc.bcm.edu	36	11	62434561	62434561	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000738	exon2	c.C588G	p.A196A	.	.	.
PPFIBP2	8495	hgsc.bcm.edu	36	11	7588154	7588154	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003621	exon6	c.G543C	p.V181V	.	.	.
ME3	10873	hgsc.bcm.edu	36	11	85838667	85838667	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001161586	exon10	c.T1043A	p.L348H	.	.	.
SCUBE2	57758	hgsc.bcm.edu	36	11	9008140	9008140	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020974	exon18	c.C2199A	p.N733K	.	.	.
ZNF143	7702	hgsc.bcm.edu	36	11	9486811	9486811	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003442	exon12	c.A1217C	p.K406T	.	.	.
CHPT1	56994	hgsc.bcm.edu	36	12	100616004	100616004	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020244	exon1	c.G234A	p.T78T	.	.	.
ACACB	32	hgsc.bcm.edu	36	12	108144772	108144772	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001093	exon24	c.A3642G	p.K1214K	.	.	.
DTX1	1840	hgsc.bcm.edu	36	12	112017272	112017272	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_004416	exon7	c.G1429C	p.E477Q	.	.	.
PITPNM2	57605	hgsc.bcm.edu	36	12	122064385	122064385	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020845	exon3	c.A236C	p.K79T	.	.	.
CCDC92	80212	hgsc.bcm.edu	36	12	122994779	122994779	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_025140	exon2	c.C27T	p.Y9Y	.	.	.
TMEM132D	121256	hgsc.bcm.edu	36	12	128129142	128129142	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_133448	exon8	c.G2005T	p.G669W	.	.	.
STRAP	11171	hgsc.bcm.edu	36	12	15927853	15927853	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_007178	exon2	c.C224A	p.A75D	.	.	.
BICD1	636	hgsc.bcm.edu	36	12	32372164	32372164	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001003398	exon5	c.C1508T	p.T503M	.	.	.
ANKRD33	341405	hgsc.bcm.edu	36	12	50571278	50571278	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001130015	exon6	c.C706T	p.P236S	.	.	.
KRT72	140807	hgsc.bcm.edu	36	12	51266141	51266141	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001146226	exon8	c.A1302T	p.K434N	.	.	.
ITGB7	3695	hgsc.bcm.edu	36	12	51877594	51877594	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000889	exon5	c.G524C	p.G175A	.	.	.
MFSD5	84975	hgsc.bcm.edu	36	12	51933312	51933312	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032889	exon2	c.C426T	p.A142A	.	.	.
TSFM	10102	hgsc.bcm.edu	36	12	56467118	56467118	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001172695	exon4	c.G389A	p.R130K	.	.	.
C12orf57	113246	hgsc.bcm.edu	36	12	6924014	6924014	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_138425	exon2	c.C167G	p.P56R	.	.	.
LPCAT3	10162	hgsc.bcm.edu	36	12	6995872	6995872	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005768	exon1	c.C118T	p.Q40X	.	.	.
CD163L1	283316	hgsc.bcm.edu	36	12	7423155	7423155	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_174941	exon9	c.C2057T	p.S686L	.	.	.
LRRIQ1	84125	hgsc.bcm.edu	36	12	83983222	83983222	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032165	exon9	c.G2443A	p.A815T	.	.	.
PZP	5858	hgsc.bcm.edu	36	12	9201200	9201200	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002864	exon28	c.G3388A	p.A1130T	.	.	.
SLC16A7	9194	hgsc.bcm.edu	36	12	58451387	58451388	+	Frame_Shift_Del	DEL	AC	AC	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	AC	AC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_004731	exon3	c.338_339del	p.113_113del	.	.	.
TMTC4	84899	hgsc.bcm.edu	36	13	100085136	100085136	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032813	exon12	c.T1430C	p.V477A	.	.	.
SACS	26278	hgsc.bcm.edu	36	13	22826841	22826841	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014363	exon8	c.A1910C	p.K637T	.	.	.
SPATA13	221178	hgsc.bcm.edu	36	13	23762904	23762904	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001166271	exon9	c.C2962A	p.L988M	.	.	.
PCDH9	5101	hgsc.bcm.edu	36	13	65777117	65777117	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020403	exon4	c.T3283A	p.C1095S	.	.	.
DYNC1H1	1778	hgsc.bcm.edu	36	14	101580091	101580091	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001376	exon70	c.T12640A	p.S4214T	.	.	.
SIVA1	10572	hgsc.bcm.edu	36	14	104296829	104296829	+	Nonsense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006427	exon4	c.A490T	p.K164X	.	.	.
TTC5	91875	hgsc.bcm.edu	36	14	19827645	19827645	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_138376	exon10	c.C1304G	p.S435W	.	.	.
LRRC16B	90668	hgsc.bcm.edu	36	14	23600067	23600067	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_138360	exon26	c.A2282C	p.K761T	.	.	.
RIPK3	11035	hgsc.bcm.edu	36	14	23878317	23878317	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006871	exon3	c.T215C	p.V72A	.	.	.
LRFN5	145581	hgsc.bcm.edu	36	14	41430265	41430265	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_152447	exon4	c.A1448G	p.D483G	.	.	.
SPTB	6710	hgsc.bcm.edu	36	14	64323409	64323409	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001024858	exon15	c.C3027A	p.A1009A	.	.	.
ALDH6A1	4329	hgsc.bcm.edu	36	14	73603946	73603946	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005589	exon8	c.G932T	p.G311V	.	.	.
CATSPERB	79820	hgsc.bcm.edu	36	14	91125706	91125706	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_024764	exon24	c.G2881A	p.D961N	.	.	.
SERPINA5	5104	hgsc.bcm.edu	36	14	94126840	94126840	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000624	exon5	c.C892A	p.Q298K	.	.	.
SERPINA3	12	hgsc.bcm.edu	36	14	94155526	94155526	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001085	exon3	c.C885T	p.T295T	.	.	.
ALDH1A2	8854	hgsc.bcm.edu	36	15	56090205	56090205	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_170697	exon2	c.G139A	p.V47I	.	.	.
USP3	9960	hgsc.bcm.edu	36	15	61668260	61668260	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006537	exon14	c.C1394A	p.S465Y	.	.	.
OTOA	146183	hgsc.bcm.edu	36	16	21647180	21647180	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_144672	exon19	c.G2134A	p.G712S	.	.	.
MVP	9961	hgsc.bcm.edu	36	16	29763543	29763543	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_017458	exon11	c.G1863C	p.R621S	.	.	.
ZNF267	10308	hgsc.bcm.edu	36	16	31834454	31834454	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003414	exon4	c.A1383G	p.E461E	.	.	.
NFAT5	10725	hgsc.bcm.edu	36	16	68283809	68283809	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_138714	exon14	c.C2298T	p.S766S	.	.	.
WFDC1	58189	hgsc.bcm.edu	36	16	82910615	82910615	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_021197	exon4	c.C499A	p.P167T	.	.	.
SUPT6H	6830	hgsc.bcm.edu	36	17	24039299	24039299	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003170	exon24	c.G3070T	p.G1024C	.	.	.
FAM134C	162427	hgsc.bcm.edu	36	17	37987399	37987399	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_178126	exon9	c.G1359T	p.S453S	.	.	.
PSME3	10197	hgsc.bcm.edu	36	17	38243680	38243680	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005789	exon6	c.C337T	p.Q113X	.	.	.
CD300LG	146894	hgsc.bcm.edu	36	17	39294761	39294761	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_145273	exon7	c.A955T	p.T319S	.	.	.
ITGA3	3675	hgsc.bcm.edu	36	17	45513702	45513702	+	Silent	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002204	exon23	c.A2850T	p.V950V	.	.	.
MRC2	9902	hgsc.bcm.edu	36	17	58106901	58106901	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006039	exon10	c.C1588A	p.P530T	.	.	.
AXIN2	8313	hgsc.bcm.edu	36	17	60984871	60984871	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_004655	exon2	c.C330A	p.F110L	.	.	.
EVPL	2125	hgsc.bcm.edu	36	17	71516369	71516369	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001988	exon22	c.C4512A	p.V1504V	.	.	.
ATP1B2	482	hgsc.bcm.edu	36	17	7499791	7499791	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001678	exon7	c.C726A	p.P242P	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518273	7518273	+	Missense_Mutation	SNP	C	C	T	rs28934575	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001126114	exon7	c.G733A	p.G245S	 TP53,central_nervous_system,brain,Substitution - Missense,0 	.	.
DNAH2	146754	hgsc.bcm.edu	36	17	7636328	7636328	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020877	exon45	c.A7087C	p.I2363L	.	.	.
ME2	4200	hgsc.bcm.edu	36	18	46693178	46693178	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001168335	exon4	c.C252T	p.Y84Y	.	.	.
PGLYRP1	8993	hgsc.bcm.edu	36	19	51214457	51214458	+	In_Frame_Ins	INS	-	-	AGT	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005091	exon3	c.470_471insACT	p.A157delinsDS	.	.	.
RTBDN	83546	hgsc.bcm.edu	36	19	12801629	12801629	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_031429	exon3	c.G261T	p.L87L	.	.	.
OR10H1	26539	hgsc.bcm.edu	36	19	15779655	15779655	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_013940	exon1	c.G193A	p.A65T	.	.	.
DMKN	93099	hgsc.bcm.edu	36	19	40683297	40683297	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_033317	exon12	c.A1265T	p.K422I	.	.	.
DMKN	93099	hgsc.bcm.edu	36	19	40696010	40696010	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_033317	exon1	c.G208A	p.A70T	.	.	.
ATP4A	495	hgsc.bcm.edu	36	19	40734229	40734229	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000704	exon19	c.A2845G	p.K949E	.	.	.
APLP1	333	hgsc.bcm.edu	36	19	41054016	41054016	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001024807	exon4	c.A462C	p.E154D	.	.	.
CLIP3	25999	hgsc.bcm.edu	36	19	41209393	41209393	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001199570	exon4	c.A497G	p.H166R	.	.	.
DYRK1B	9149	hgsc.bcm.edu	36	19	45010835	45010835	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006483	exon6	c.C749G	p.P250R	.	.	.
AKT2	208	hgsc.bcm.edu	36	19	45431663	45431663	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001626	exon14	c.A1402T	p.T468S	.	.	.
KCNN4	3783	hgsc.bcm.edu	36	19	48968031	48968031	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002250	exon4	c.C780A	p.T260T	.	.	.
ERCC2	2068	hgsc.bcm.edu	36	19	50547678	50547678	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000400	exon21	c.C1972T	p.R658C	.	.	.
FKRP	79147	hgsc.bcm.edu	36	19	51951752	51951752	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_024301	exon4	c.T1205A	p.F402Y	.	.	.
TULP2	7288	hgsc.bcm.edu	36	19	54076171	54076171	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003323	exon13	c.G1472A	p.G491D	.	.	.
KLK2	3817	hgsc.bcm.edu	36	19	56069911	56069911	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001002231	exon2	c.C169A	p.P57T	 KLK2,skin,NS,Substitution - Missense,0 	.	.
NLRP12	91662	hgsc.bcm.edu	36	19	59004911	59004911	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_144687	exon3	c.C1814T	p.T605I	.	.	.
LILRB5	10990	hgsc.bcm.edu	36	19	59452842	59452842	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001081442	exon1	c.T27C	p.I9I	.	.	.
CD70	970	hgsc.bcm.edu	36	19	6537286	6537286	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001252	exon3	c.G327C	p.Q109H	.	.	.
ZNF77	58492	hgsc.bcm.edu	36	19	2885739	2885740	+	Frame_Shift_Del	DEL	AG	AG	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	AG	AG	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_021217	exon4	c.385_386del	p.129_129del	.	.	.
SORT1	6272	hgsc.bcm.edu	36	1	109671673	109671673	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002959	exon12	c.C1445A	p.P482Q	.	.	.
HBXIP	10542	hgsc.bcm.edu	36	1	110748139	110748139	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006402	exon3	c.T386A	p.V129D	.	.	.
PBXIP1	57326	hgsc.bcm.edu	36	1	153184882	153184882	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020524	exon10	c.A1892T	p.Q631L	.	.	.
ASH1L	55870	hgsc.bcm.edu	36	1	153675152	153675152	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_018489	exon5	c.A5418T	p.Q1806H	.	.	.
BCAN	63827	hgsc.bcm.edu	36	1	154887966	154887966	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_021948	exon7	c.C1158T	p.T386T	.	.	.
BCAN	63827	hgsc.bcm.edu	36	1	154888090	154888090	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_021948	exon7	c.C1282T	p.P428S	.	.	.
FCRL4	83417	hgsc.bcm.edu	36	1	155823812	155823812	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_031282	exon5	c.C725T	p.T242M	.	.	.
OR10T2	128360	hgsc.bcm.edu	36	1	156635346	156635346	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001004475	exon1	c.T535G	p.F179V	.	.	.
CASP9	842	hgsc.bcm.edu	36	1	15693012	15693012	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032996	exon8	c.T871A	p.W291R	.	.	.
OR10J5	127385	hgsc.bcm.edu	36	1	157771494	157771494	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001004469	exon1	c.T928A	p.X310K	.	.	.
RCSD1	92241	hgsc.bcm.edu	36	1	165933191	165933191	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_052862	exon6	c.A706G	p.K236E	.	.	.
C1orf112	55732	hgsc.bcm.edu	36	1	168063497	168063497	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_018186	exon12	c.T1019G	p.F340C	.	.	.
PADI3	51702	hgsc.bcm.edu	36	1	17467031	17467031	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_016233	exon6	c.C639G	p.V213V	.	.	.
UBR4	23352	hgsc.bcm.edu	36	1	19291968	19291968	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020765	exon97	c.T14143C	p.S4715P	.	.	.
CACNA1S	779	hgsc.bcm.edu	36	1	199320744	199320744	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000069	exon9	c.A1189T	p.S397C	.	.	.
TNNT2	7139	hgsc.bcm.edu	36	1	199600116	199600116	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000364	exon11	c.G422A	p.R141Q	.	.	.
FAM71A	149647	hgsc.bcm.edu	36	1	210865170	210865170	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_153606	exon1	c.C328T	p.R110C	.	.	.
USH2A	7399	hgsc.bcm.edu	36	1	214140743	214140743	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_206933	exon39	c.C7428T	p.G2476G	.	.	.
EIF3I	8668	hgsc.bcm.edu	36	1	32462631	32462631	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003757	exon4	c.A218T	p.D73V	.	.	.
PTPRF	5792	hgsc.bcm.edu	36	1	43857948	43857948	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_130440	exon28	c.G4916C	p.S1639T	.	.	.
FUBP1	8880	hgsc.bcm.edu	36	1	78201073	78201073	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003902	exon14	c.T1314C	p.Y438Y	.	.	.
GIPC2	54810	hgsc.bcm.edu	36	1	78284587	78284587	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_017655	exon1	c.T221A	p.F74Y	.	.	.
SLC2A7	155184	hgsc.bcm.edu	36	1	9005663	9005663	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_207420	exon3	c.A212C	p.K71T	.	.	.
ASXL1	171023	hgsc.bcm.edu	36	20	30485154	30485154	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_015338	exon11	c.G1492T	p.A498S	.	.	.
ERGIC3	51614	hgsc.bcm.edu	36	20	33593742	33593742	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_198398	exon3	c.T226A	p.F76I	.	.	.
PIGT	51604	hgsc.bcm.edu	36	20	43487817	43487817	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001184730	exon10	c.A1368C	p.T456T	.	.	.
ZSWIM3	140831	hgsc.bcm.edu	36	20	43940146	43940146	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_080752	exon2	c.G1542T	p.W514C	.	.	.
SLC12A5	57468	hgsc.bcm.edu	36	20	44107027	44107027	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020708	exon12	c.G1410T	p.V470V	.	.	.
ZMYND8	23613	hgsc.bcm.edu	36	20	45338558	45338558	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_012408	exon11	c.G1387T	p.G463C	.	.	.
CDH4	1002	hgsc.bcm.edu	36	20	59853226	59853226	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001794	exon5	c.G684C	p.R228R	.	.	.
C20orf54	113278	hgsc.bcm.edu	36	20	692512	692512	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_033409	exon3	c.C703A	p.L235I	.	.	.
IGSF5	150084	hgsc.bcm.edu	36	21	40059626	40059626	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001080444	exon3	c.G395T	p.G132V	.	.	.
SMARCB1	6598	hgsc.bcm.edu	36	22	22497452	22497452	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003073	exon7	c.T836G	p.F279C	.	.	.
MORC2	22880	hgsc.bcm.edu	36	22	29658993	29658993	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014941	exon23	c.G2219A	p.R740H	.	.	.
BPIL2	254240	hgsc.bcm.edu	36	22	31163789	31163789	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_174932	exon7	c.T705G	p.S235R	.	.	.
PI4KA	5297	hgsc.bcm.edu	36	22	19431936	19431937	+	Frame_Shift_Del	DEL	GC	GC	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	GC	GC	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_058004	exon29	c.3123_3124del	p.1041_1042del	.	.	.
GREB1	9687	hgsc.bcm.edu	36	2	11614206	11614206	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_148903	exon2	c.C15A	p.Y5X	.	.	.
TPO	7173	hgsc.bcm.edu	36	2	1486744	1486744	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_175719	exon13	c.G2233C	p.D745H	.	.	.
TNS1	7145	hgsc.bcm.edu	36	2	218466457	218466457	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022648	exon8	c.G292T	p.D98Y	.	.	.
DGKD	8527	hgsc.bcm.edu	36	2	234010817	234010817	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_152879	exon8	c.A875C	p.K292T	.	.	.
TRPM8	79054	hgsc.bcm.edu	36	2	234500002	234500002	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_024080	exon2	c.C81A	p.S27R	.	.	.
FARP2	9855	hgsc.bcm.edu	36	2	242078056	242078056	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014808	exon22	c.G2428C	p.E810Q	.	.	.
GALNT14	79623	hgsc.bcm.edu	36	2	31022229	31022229	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_024572	exon7	c.G666T	p.R222R	.	.	.
C2orf42	54980	hgsc.bcm.edu	36	2	70261979	70261979	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_017880	exon3	c.A643G	p.K215E	.	.	.
DCTN1	1639	hgsc.bcm.edu	36	2	74448433	74448433	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_023019	exon13	c.C1680T	p.A560A	.	.	.
RTKN	6242	hgsc.bcm.edu	36	2	74511279	74511279	+	Silent	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001015056	exon3	c.C195G	p.S65S	.	.	.
ITGB5	3693	hgsc.bcm.edu	36	3	125970563	125970563	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002213	exon12	c.G2004T	p.W668C	.	.	.
ITGB5	3693	hgsc.bcm.edu	36	3	125998039	125998039	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002213	exon10	c.G1579C	p.D527H	.	.	.
XRN1	54464	hgsc.bcm.edu	36	3	143558467	143558467	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_019001	exon31	c.C3649T	p.Q1217X	.	.	.
P2RY12	64805	hgsc.bcm.edu	36	3	152538362	152538362	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022788	exon3	c.C962T	p.S321F	.	.	.
LEKR1	389170	hgsc.bcm.edu	36	3	158245904	158245904	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001004316	exon13	c.C1750G	p.Q584E	.	.	.
FNDC3B	64778	hgsc.bcm.edu	36	3	173507908	173507908	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001135095	exon10	c.C1123G	p.H375D	.	.	.
EIF2B5	8893	hgsc.bcm.edu	36	3	185345405	185345405	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003907	exon16	c.G2146A	p.E716K	.	.	.
BCL6	604	hgsc.bcm.edu	36	3	188926063	188926063	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001130845	exon8	c.C1757A	p.P586Q	.	.	.
WDR51A	25886	hgsc.bcm.edu	36	3	52158402	52158402	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001161581	exon4	c.A205T	p.R69W	.	.	.
BOD1L	259282	hgsc.bcm.edu	36	4	13180750	13180750	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_148894	exon26	c.A9139G	p.K3047E	.	.	.
GABRB1	2560	hgsc.bcm.edu	36	4	47122511	47122511	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000812	exon9	c.G1144T	p.E382X	.	.	.
STK32B	55351	hgsc.bcm.edu	36	4	5512754	5512754	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_018401	exon9	c.C807T	p.S269S	.	.	.
HERC3	8916	hgsc.bcm.edu	36	4	89818166	89818166	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014606	exon19	c.A2054T	p.N685I	.	.	.
APC	324	hgsc.bcm.edu	36	5	112203310	112203310	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001127511	exon14	c.G4066T	p.E1356X	 APC,pancreas,NS,Substitution - coding silent,-2 	.	.
PSD2	84249	hgsc.bcm.edu	36	5	139173103	139173103	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_032289	exon3	c.G397T	p.V133L	.	.	.
PCDH12	51294	hgsc.bcm.edu	36	5	141315681	141315681	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_016580	exon1	c.T1920C	p.S640S	.	.	.
CSF1R	1436	hgsc.bcm.edu	36	5	149430006	149430006	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005211	exon9	c.T1251G	p.L417L	.	.	.
LIFR	3977	hgsc.bcm.edu	36	5	38542393	38542393	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001127671	exon8	c.C1090A	p.P364T	.	.	.
IYD	389434	hgsc.bcm.edu	36	6	150731897	150731897	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001164695	exon1	c.T37A	p.C13S	.	.	.
MYCT1	80177	hgsc.bcm.edu	36	6	153084919	153084919	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_025107	exon2	c.T546A	p.S182R	.	.	.
MYCT1	80177	hgsc.bcm.edu	36	6	153084996	153084996	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_025107	exon2	c.G623T	p.W208L	.	.	.
THBS2	7058	hgsc.bcm.edu	36	6	169392764	169392764	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003247	exon3	c.C41A	p.P14H	.	.	.
CDKAL1	54901	hgsc.bcm.edu	36	6	21339193	21339193	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_017774	exon16	c.G1684A	p.V562M	.	.	.
BTN3A1	11119	hgsc.bcm.edu	36	6	26519340	26519340	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001145009	exon8	c.A989C	p.N330T	.	.	.
GPX5	2880	hgsc.bcm.edu	36	6	28605313	28605313	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_003996	exon2	c.T194A	p.L65H	.	.	.
KIF6	221458	hgsc.bcm.edu	36	6	39436154	39436154	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_145027	exon18	c.C2077T	p.L693L	.	.	.
CUL7	9820	hgsc.bcm.edu	36	6	43119191	43119191	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014780	exon17	c.C3328A	p.P1110T	.	.	.
TNFRSF21	27242	hgsc.bcm.edu	36	6	47308488	47308488	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014452	exon6	c.T1940C	p.V647A	.	.	.
PKHD1	5314	hgsc.bcm.edu	36	6	51840635	51840635	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_170724	exon48	c.G7718T	p.R2573L	.	.	.
EFHC1	114327	hgsc.bcm.edu	36	6	52396795	52396795	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_018100	exon2	c.C156T	p.L52L	.	.	.
ING3	54556	hgsc.bcm.edu	36	7	120378497	120378497	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_019071	exon2	c.A72T	p.E24D	.	.	.
WNT16	51384	hgsc.bcm.edu	36	7	120766491	120766491	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_016087	exon4	c.T924C	p.D308D	.	.	.
CPA5	93979	hgsc.bcm.edu	36	7	129786714	129786714	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001127441	exon7	c.G382C	p.E128Q	.	.	.
ZNF107	51427	hgsc.bcm.edu	36	7	63805705	63805705	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001013746	exon5	c.G1588A	p.G530S	.	.	.
HIP1	3092	hgsc.bcm.edu	36	7	75010152	75010152	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005338	exon28	c.C2844T	p.G948G	.	.	.
EGFR	1956	hgsc.bcm.edu	36	7	55216499	55216499	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005228	exon20	c.G2303C	p.S768T	 EGFR,oesophagus,middle_third,Substitution - Missense,0 	.	.
JPH1	56704	hgsc.bcm.edu	36	8	75319834	75319835	+	Frame_Shift_Ins	INS	-	-	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020647	exon4	c.1389_1390insC	p.P463fs	.	.	.
DEPDC6	64798	hgsc.bcm.edu	36	8	121009992	121009992	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022783	exon2	c.T294G	p.I98M	.	.	.
COL14A1	7373	hgsc.bcm.edu	36	8	121450768	121450768	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_021110	exon47	c.G5174A	p.R1725Q	.	.	.
COL22A1	169044	hgsc.bcm.edu	36	8	139670827	139670827	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_152888	exon65	c.C4732T	p.P1578S	.	.	.
ZNF623	9831	hgsc.bcm.edu	36	8	144803315	144803315	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_014789	exon1	c.C130T	p.P44S	.	.	.
ZNF16	7564	hgsc.bcm.edu	36	8	146127161	146127161	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_006958	exon3	c.T1816C	p.C606R	.	.	.
ADHFE1	137872	hgsc.bcm.edu	36	8	67535119	67535119	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_144650	exon13	c.G1185T	p.R395S	.	.	.
PTPN3	5774	hgsc.bcm.edu	36	9	111193645	111193646	+	Frame_Shift_Ins	INS	-	-	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_002829	exon20	c.1971_1972insA	p.K657fs	.	.	.
RANBP6	26953	hgsc.bcm.edu	36	9	6004442	6004443	+	Frame_Shift_Ins	INS	-	-	CAGTT	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_012416	exon1	c.1166_1167insAACTG	p.A389fs	.	.	.
DMRT2	10655	hgsc.bcm.edu	36	9	1046729	1046729	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_181872	exon4	c.C1142A	p.A381E	.	.	.
ABCA1	19	hgsc.bcm.edu	36	9	106598170	106598170	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_005502	exon39	c.G5367T	p.E1789D	.	.	.
CIZ1	25792	hgsc.bcm.edu	36	9	129978481	129978481	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001131015	exon12	c.T1745C	p.V582A	.	.	.
SH3GLB2	56904	hgsc.bcm.edu	36	9	130816601	130816601	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020145	exon5	c.G471C	p.K157N	.	.	.
DDX31	64794	hgsc.bcm.edu	36	9	134495524	134495524	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022779	exon16	c.T1894C	p.L632L	.	.	.
GTF3C5	9328	hgsc.bcm.edu	36	9	134907341	134907341	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001122823	exon2	c.A200T	p.K67M	.	.	.
NFX1	4799	hgsc.bcm.edu	36	9	33303741	33303741	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_147134	exon7	c.A1538T	p.E513V	.	.	.
IPPK	64768	hgsc.bcm.edu	36	9	94440255	94440255	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022755	exon9	c.G765T	p.R255S	.	.	.
GTF3C5	9328	hgsc.bcm.edu	36	9	134907344	134907344	+	Frame_Shift_Del	DEL	A	A	-	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001122823	exon2	c.203delA	p.D68fs	.	.	.
MID1	4281	hgsc.bcm.edu	36	X	10495192	10495192	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001193277	exon2	c.G396C	p.K132N	.	.	.
COL4A6	1288	hgsc.bcm.edu	36	X	107295283	107295283	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_033641	exon38	c.G3781T	p.G1261W	.	.	.
RGAG1	57529	hgsc.bcm.edu	36	X	109582525	109582525	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_020769	exon3	c.C2024T	p.A675V	.	.	.
PHKA2	5256	hgsc.bcm.edu	36	X	18836854	18836854	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_000292	exon21	c.T2346G	p.I782M	.	.	.
ZMYM3	9203	hgsc.bcm.edu	36	X	70385726	70385726	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_001171162	exon8	c.C1489A	p.P497T	.	.	.
TNMD	64102	hgsc.bcm.edu	36	X	99726694	99726694	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-3542-01A-02W-0831-10	TCGA-AA-3542-10A-01W-0831-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	b63fed2f-0592-47cc-aa86-41809c9ea8ec	d74676bc-cb54-48a4-96d2-5e17903768f0	NM_022144	exon1	c.A23C	p.N8T	.	.	.
