Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
CNNM1	26507	broad.mit.edu	36	10	101080470	101080470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020348	exon1	c.G1336A	p.A446T	.	.	.
DNMBP	23268	broad.mit.edu	36	10	101705689	101705689	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015221	exon4	c.C1532T	p.T511M	.	.	.
PDZD7	79955	broad.mit.edu	36	10	102779811	102779811	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195263	exon2	c.C156T	p.N52N	.	.	.
ATRNL1	26033	broad.mit.edu	36	10	117049596	117049596	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207303	exon16	c.G2478A	p.M826I	.	.	.
GFRA1	2674	broad.mit.edu	36	10	118020434	118020434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145453	exon3	c.C224T	p.A75V	.	.	.
EIF3A	8661	broad.mit.edu	36	10	120792023	120792023	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003750	exon19	c.G2999A	p.R1000Q	.	.	.
PPAPDC1A	196051	broad.mit.edu	36	10	122324695	122324695	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030059	exon6	c.G508A	p.E170K	.	.	.
WDR11	55717	broad.mit.edu	36	10	122654830	122654830	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon26	c.A3203G	p.Q1068R	.	.	.
CHST15	51363	broad.mit.edu	36	10	125795343	125795343	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015892	exon2	c.G376A	p.E126K	.	.	.
CTBP2	1488	broad.mit.edu	36	10	126671858	126671858	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001329	exon9	c.G942A	p.P314P	.	.	.
MKI67	4288	broad.mit.edu	36	10	129796242	129796242	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.G2772A	p.A924A	.	.	.
TUBGCP2	10844	broad.mit.edu	36	10	134952404	134952404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006659	exon10	c.G1471A	p.A491T	.	.	.
THNSL1	79896	broad.mit.edu	36	10	25353357	25353357	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024838	exon3	c.G1199T	p.R400M	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27053028	27053028	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014317	exon8	c.C801T	p.T267T	.	.	.
LYZL2	119180	broad.mit.edu	36	10	30955168	30955168	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183058	exon3	c.A308G	p.Y103C	.	.	.
ARHGAP22	58504	broad.mit.edu	36	10	49337836	49337836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021226	exon5	c.C556T	p.R186C	.	.	.
TFAM	7019	broad.mit.edu	36	10	59818458	59818458	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003201	exon4	c.C314T	p.A105V	.	.	.
CDH23	64072	broad.mit.edu	36	10	73244878	73244878	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171933	exon23	c.C3182A	p.P1061H	.	.	.
USP54	159195	broad.mit.edu	36	10	74946649	74946649	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152586	exon18	c.T3541C	p.W1181R	.	.	.
GRID1	2894	broad.mit.edu	36	10	87618853	87618853	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017551	exon6	c.G845A	p.R282Q	.	.	.
BMPR1A	657	broad.mit.edu	36	10	88666929	88666929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004329	exon9	c.A734G	p.Y245C	.	.	.
KIAA1377	57562	broad.mit.edu	36	11	101339684	101339684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020802	exon6	c.C2708T	p.A903V	.	.	.
CASP5	838	broad.mit.edu	36	11	104376327	104376327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136112	exon6	c.G862A	p.G288R	.	.	.
HSPB2	3316	broad.mit.edu	36	11	111289729	111289729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001541	exon2	c.G449A	p.G150D	.	.	.
CEP164	22897	broad.mit.edu	36	11	116785666	116785666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon30	c.C3871T	p.P1291S	.	.	.
BCL9L	283149	broad.mit.edu	36	11	118283501	118283501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182557	exon3	c.C433T	p.R145W	.	.	.
MFRP	83552	broad.mit.edu	36	11	118721407	118721407	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031433	exon5	c.G574T	p.E192X	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1221472	1221472	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002458	exon31	c.C6786T	p.T2262T	.	.	.
OR10S1	219873	broad.mit.edu	36	11	123352977	123352977	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004474	exon1	c.T632C	p.L211P	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123391779	123391779	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004462	exon1	c.C288T	p.C96C	.	.	.
ACRV1	56	broad.mit.edu	36	11	125052954	125052954	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001612	exon2	c.G501A	p.E167E	.	.	.
ARHGAP32	9743	broad.mit.edu	36	11	128344096	128344096	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014715	exon13	c.C5133A	p.T1711T	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29990599	29990599	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002233	exon2	c.G203A	p.R68H	.	.	.
DCDC1	341019	broad.mit.edu	36	11	31284486	31284486	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181807	exon5	c.T460C	p.F154L	.	.	.
CHST1	8534	broad.mit.edu	36	11	45628296	45628296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003654	exon4	c.C754T	p.R252W	.	.	.
ZNF408	79797	broad.mit.edu	36	11	46682625	46682625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024741	exon5	c.G799A	p.A267T	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47698191	47698191	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon16	c.G2829A	p.M943I	.	.	.
OR5D16	390144	broad.mit.edu	36	11	55363205	55363205	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005496	exon1	c.C402T	p.Y134Y	.	.	.
OR52N2	390077	broad.mit.edu	36	11	5798307	5798307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005174	exon1	c.G166A	p.A56T	.	.	.
OR52L1	338751	broad.mit.edu	36	11	5964098	5964098	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005173	exon1	c.T639C	p.N213N	.	.	.
MARK2	2011	broad.mit.edu	36	11	63424864	63424864	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017490	exon10	c.G826A	p.E276K	.	.	.
CFL1	1072	broad.mit.edu	36	11	65380119	65380119	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005507	exon2	c.C174T	p.G58G	.	.	.
TPP1	1200	broad.mit.edu	36	11	6593834	6593834	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000391	exon9	c.C1123T	p.R375C	.	.	.
RNF121	55298	broad.mit.edu	36	11	71349475	71349475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018320	exon3	c.C133T	p.R45C	.	.	.
FOLR1	2348	broad.mit.edu	36	11	71584319	71584319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016724	exon5	c.C373T	p.R125C	.	.	.
FOLR2	2350	broad.mit.edu	36	11	71610334	71610334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113536	exon5	c.C648T	p.N216N	.	.	.
STARD10	10809	broad.mit.edu	36	11	72147942	72147942	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006645	exon3	c.G340A	p.V114M	.	.	.
LRRC32	2615	broad.mit.edu	36	11	76049355	76049355	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128922	exon3	c.C930T	p.S310S	.	.	.
TSKU	25987	broad.mit.edu	36	11	76185223	76185223	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015516	exon2	c.G915A	p.L305L	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78076910	78076910	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon29	c.C5097T	p.S1699S	.	.	.
OR10A3	26496	broad.mit.edu	36	11	7917475	7917475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003745	exon1	c.G169A	p.V57I	.	.	.
PCF11	51585	broad.mit.edu	36	11	82573400	82573400	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015885	exon16	c.G4484A	p.S1495N	.	.	.
MAML2	84441	broad.mit.edu	36	11	95464908	95464908	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032427	exon2	c.A1935G	p.Q645Q	.	.	.
ALDH1L2	160428	broad.mit.edu	36	12	103942348	103942348	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001034173	exon23	c.T2756C	p.V919A	.	.	.
CCDC64	92558	broad.mit.edu	36	12	118994827	118994827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon6	c.G1219A	p.A407T	.	.	.
VPS33A	65082	broad.mit.edu	36	12	121283383	121283383	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022916	exon12	c.G1526A	p.R509Q	.	.	.
LRP6	4040	broad.mit.edu	36	12	12176101	12176101	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon18	c.T3891C	p.S1297S	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122896292	122896292	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon30	c.C5199T	p.N1733N	.	.	.
SLC15A4	121260	broad.mit.edu	36	12	127865419	127865419	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145648	exon2	c.C696T	p.C232C	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129450202	129450202	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon18	c.C3107T	p.T1036M	.	.	.
POLE	5426	broad.mit.edu	36	12	131743898	131743898	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006231	exon29	c.G3479A	p.R1160H	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13608027	13608027	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon13	c.C3412T	p.R1138X	.	.	.
GYS2	2998	broad.mit.edu	36	12	21620112	21620112	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon3	c.T450C	p.N150N	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29800044	29800044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193451	exon4	c.C596T	p.T199M	.	.	.
IPO8	10526	broad.mit.edu	36	12	30697276	30697276	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006390	exon18	c.C1966T	p.L656F	.	.	.
PPHLN1	51535	broad.mit.edu	36	12	41065017	41065017	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201438	exon6	c.C376T	p.R126C	.	.	.
MLL2	8085	broad.mit.edu	36	12	47706793	47706793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003482	exon48	c.G15223A	p.G5075R	.	.	.
MLL2	8085	broad.mit.edu	36	12	47726397	47726397	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon16	c.G4496T	p.G1499V	.	.	.
ACVR1B	91	broad.mit.edu	36	12	50671997	50671997	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020327	exon8	c.G1189A	p.D397N	.	.	.
KRT75	9119	broad.mit.edu	36	12	51104697	51104697	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004693	exon9	c.G1527T	p.G509G	.	.	.
KRT73	319101	broad.mit.edu	36	12	51296337	51296337	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175068	exon2	c.C542A	p.P181H	.	.	.
HNRNPA1	3178	broad.mit.edu	36	12	52961545	52961545	+	Missense_Mutation	SNP	G	A	A	rs61910737	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031157	exon2	c.G124A	p.D42N	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66338109	66338109	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003583	exon2	c.G936A	p.S312S	.	.	.
LGR5	8549	broad.mit.edu	36	12	70263727	70263727	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003667	exon18	c.G1670A	p.G557D	.	.	.
DPPA3	359787	broad.mit.edu	36	12	7755467	7755467	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199286	exon1	c.C34A	p.P12T	.	.	.
MYF6	4618	broad.mit.edu	36	12	79625749	79625749	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002469	exon1	c.C120A	p.T40T	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80171306	80171306	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024560	exon14	c.A1809G	p.V603V	.	.	.
APAF1	317	broad.mit.edu	36	12	97621323	97621323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013229	exon18	c.C2477T	p.T826M	.	.	.
ANO4	121601	broad.mit.edu	36	12	99892779	99892779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178826	exon6	c.C478T	p.R160C	.	.	.
C1QTNF9B	387911	broad.mit.edu	36	13	23363977	23363977	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014442	exon4	c.C231T	p.P77P	.	.	.
PARP4	143	broad.mit.edu	36	13	23927207	23927207	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006437	exon22	c.G2706A	p.A902A	.	.	.
MTMR6	9107	broad.mit.edu	36	13	24721596	24721596	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004685	exon14	c.G1640A	p.G547D	.	.	.
ATP8A2	51761	broad.mit.edu	36	13	25309398	25309398	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016529	exon29	c.A2852C	p.Q951P	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37123546	37123546	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135957	exon8	c.T1935C	p.S645S	.	.	.
FREM2	341640	broad.mit.edu	36	13	38322215	38322215	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon9	c.C6420T	p.S2140S	.	.	.
KBTBD6	89890	broad.mit.edu	36	13	40604125	40604125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152903	exon1	c.G523A	p.A175T	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104481656	104481656	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.T11177C	p.M3726T	.	.	.
SALL2	6297	broad.mit.edu	36	14	21074865	21074865	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005407	exon1	c.C31T	p.Q11X	.	.	.
REC8	9985	broad.mit.edu	36	14	23716524	23716524	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005132	exon11	c.G748T	p.G250X	.	.	.
RIPK3	11035	broad.mit.edu	36	14	23878111	23878111	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006871	exon3	c.C421G	p.R141G	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23909099	23909099	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136022	exon3	c.C844A	p.R282R	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41425632	41425632	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152447	exon3	c.G54A	p.Q18Q	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41426506	41426506	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152447	exon3	c.G928T	p.A310S	.	.	.
C14orf28	122525	broad.mit.edu	36	14	44444341	44444341	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017923	exon5	c.A771G	p.T257T	.	.	.
PELI2	57161	broad.mit.edu	36	14	55826798	55826798	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021255	exon5	c.C567T	p.G189G	.	.	.
C14orf101	54916	broad.mit.edu	36	14	56122319	56122319	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017799	exon3	c.G280A	p.V94I	.	.	.
GPX2	2877	broad.mit.edu	36	14	64476143	64476143	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002083	exon2	c.C389A	p.P130Q	.	.	.
PLEKHH1	57475	broad.mit.edu	36	14	67098835	67098835	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020715	exon7	c.A734G	p.H245R	.	.	.
DCAF5	8816	broad.mit.edu	36	14	68591007	68591007	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003861	exon9	c.G2149A	p.A717T	.	.	.
ZNF410	57862	broad.mit.edu	36	14	73434653	73434653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021188	exon5	c.C515T	p.A172V	.	.	.
SETD3	84193	broad.mit.edu	36	14	98935061	98935061	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032233	exon13	c.C1493T	p.P498L	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23491203	23491203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon14	c.G2944A	p.A982T	.	.	.
RYR3	6263	broad.mit.edu	36	15	31742194	31742194	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon35	c.C5171A	p.P1724H	.	.	.
TMEM85	51234	broad.mit.edu	36	15	32308052	32308052	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016454	exon4	c.G486A	p.S162S	.	.	.
INO80	54617	broad.mit.edu	36	15	39064853	39064853	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017553	exon32	c.G3896A	p.R1299Q	.	.	.
DUOXA2	405753	broad.mit.edu	36	15	43196083	43196083	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207581	exon4	c.G418A	p.A140T	.	.	.
SECISBP2L	9728	broad.mit.edu	36	15	47112461	47112461	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014701	exon4	c.G657T	p.Q219H	.	.	.
DMXL2	23312	broad.mit.edu	36	15	49626747	49626747	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015263	exon7	c.T718C	p.W240R	.	.	.
TEX9	374618	broad.mit.edu	36	15	54474322	54474322	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198524	exon9	c.A826G	p.R276G	.	.	.
TLN2	83660	broad.mit.edu	36	15	60875501	60875501	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015059	exon44	c.G6006A	p.A2002A	.	.	.
DIS3L	115752	broad.mit.edu	36	15	64402934	64402934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143688	exon11	c.G1624A	p.V542I	.	.	.
TLE3	7090	broad.mit.edu	36	15	68153967	68153967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020908	exon6	c.G331A	p.A111T	.	.	.
CYP11A1	1583	broad.mit.edu	36	15	72417998	72417998	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000781	exon8	c.C1401T	p.I467I	.	.	.
NEIL1	79661	broad.mit.edu	36	15	73434050	73434050	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024608	exon9	c.G940A	p.A314T	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76250919	76250919	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon14	c.G2085A	p.T695T	.	.	.
DNAJA4	55466	broad.mit.edu	36	15	76359459	76359459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130183	exon6	c.G814A	p.G272R	.	.	.
MESDC2	23184	broad.mit.edu	36	15	79058756	79058756	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015154	exon3	c.G564T	p.Q188H	.	.	.
NTRK3	4916	broad.mit.edu	36	15	86600333	86600333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007156	exon2	c.G56A	p.G19E	.	.	.
POLG	5428	broad.mit.edu	36	15	87663564	87663564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126131	exon19	c.C3003T	p.G1001G	.	.	.
RHCG	51458	broad.mit.edu	36	15	87824519	87824519	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016321	exon4	c.A647G	p.Q216R	.	.	.
IDH2	3418	broad.mit.edu	36	15	88435856	88435856	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002168	exon2	c.C140T	p.A47V	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88735107	88735107	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003870	exon2	c.G153T	p.K51N	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97295627	97295627	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000875	exon16	c.G3008A	p.R1003Q	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98474722	98474722	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139057	exon13	c.C1741T	p.H581Y	.	.	.
LRRK1	79705	broad.mit.edu	36	15	99407412	99407412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024652	exon23	c.G3340A	p.G1114R	.	.	.
TRAF7	84231	broad.mit.edu	36	16	2153961	2153962	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032271	exon2	c.39_40insG	p.S13fs	.	.	.
FAM57B	83723	broad.mit.edu	36	16	29949321	29949322	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031478	exon1	c.29_30insG	p.V10fs	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	10181696	10181696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001134408	exon2	c.C74T	p.A25V	.	.	.
ABCC6	368	broad.mit.edu	36	16	16151572	16151572	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon31	c.G4431A	p.V1477V	.	.	.
SMG1	23049	broad.mit.edu	36	16	18787525	18787525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015092	exon21	c.G2851A	p.A951T	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20601156	20601156	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052956	exon3	c.G534A	p.Q178Q	.	.	.
LOC81691	81691	broad.mit.edu	36	16	20732068	20732068	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199053	exon3	c.A194C	p.Q65P	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22067007	22067007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173615	exon28	c.G2863A	p.V955I	.	.	.
CACNG3	10368	broad.mit.edu	36	16	24273771	24273771	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006539	exon3	c.G412A	p.A138T	.	.	.
SPNS1	83985	broad.mit.edu	36	16	28902046	28902046	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142449	exon8	c.C1032T	p.A344A	.	.	.
ZNF668	79759	broad.mit.edu	36	16	30980655	30980655	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172669	exon4	c.C1164T	p.R388R	.	.	.
BCKDK	10295	broad.mit.edu	36	16	31029310	31029310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122957	exon7	c.C631T	p.H211Y	.	.	.
PPL	5493	broad.mit.edu	36	16	4875790	4875790	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002705	exon22	c.C2867T	p.T956M	.	.	.
IRX3	79191	broad.mit.edu	36	16	52875688	52875688	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024336	exon3	c.C1422G	p.L474L	.	.	.
CMTM2	146225	broad.mit.edu	36	16	65178470	65178470	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199317	exon2	c.C355T	p.R119X	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66133989	66133989	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193522	exon13	c.G1811A	p.S604N	.	.	.
HAS3	3038	broad.mit.edu	36	16	67706222	67706222	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005329	exon4	c.G1214A	p.R405H	.	.	.
NOB1	28987	broad.mit.edu	36	16	68336382	68336382	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014062	exon8	c.T864C	p.C288C	.	.	.
SF3B3	23450	broad.mit.edu	36	16	69120594	69120594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012426	exon3	c.G388A	p.V130I	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69685315	69685315	+	Missense_Mutation	SNP	C	T	T	rs7200485	byCluster;byFrequency;by2Hit2Allele;byHapMap	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon11	c.G1352A	p.R451Q	.	.	.
OSGIN1	29948	broad.mit.edu	36	16	82551789	82551789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182980	exon4	c.C319A	p.L107I	.	.	.
TAF1C	9013	broad.mit.edu	36	16	82774399	82774399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139353	exon5	c.G159A	p.A53A	.	.	.
ANKRD11	29123	broad.mit.edu	36	16	87877464	87877464	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013275	exon9	c.G2987A	p.G996D	.	.	.
FAM83G	644815	broad.mit.edu	36	17	18821853	18821854	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001039999	exon5	c.1851_1852insT	p.E617fs	.	.	.
ULK2	9706	broad.mit.edu	36	17	19627645	19627645	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142610	exon22	c.T2417C	p.I806T	.	.	.
ULK2	9706	broad.mit.edu	36	17	19645765	19645765	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142610	exon16	c.C1358T	p.S453F	.	.	.
SUPT6H	6830	broad.mit.edu	36	17	24044919	24044919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003170	exon28	c.G3712A	p.G1238S	.	.	.
ASPA	443	broad.mit.edu	36	17	3349022	3349022	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000049	exon6	c.G832A	p.V278M	.	.	.
IGFBP4	3487	broad.mit.edu	36	17	35863815	35863815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001552	exon3	c.G617A	p.R206H	.	.	.
SMARCE1	6605	broad.mit.edu	36	17	36040629	36040629	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003079	exon10	c.G890A	p.R297H	.	.	.
KRT25	147183	broad.mit.edu	36	17	36164963	36164963	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181534	exon1	c.C87A	p.S29R	.	.	.
KRT34	3885	broad.mit.edu	36	17	36789225	36789225	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021013	exon5	c.G908T	p.S303I	.	.	.
DHX58	79132	broad.mit.edu	36	17	37511507	37511507	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024119	exon9	c.G1024A	p.A342T	.	.	.
MPP3	4356	broad.mit.edu	36	17	39246905	39246905	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001932	exon16	c.C1255T	p.H419Y	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39690950	39690950	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000342	exon11	c.G1212T	p.Q404H	.	.	.
GRN	2896	broad.mit.edu	36	17	39783186	39783186	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002087	exon5	c.G414A	p.T138T	.	.	.
DBF4B	80174	broad.mit.edu	36	17	40181349	40181349	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025104	exon13	c.C1179T	p.C393C	.	.	.
PELP1	27043	broad.mit.edu	36	17	4522819	4522819	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014389	exon16	c.T2216C	p.I739T	.	.	.
PELP1	27043	broad.mit.edu	36	17	4523433	4523433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014389	exon15	c.C1706T	p.P569L	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45622939	45622939	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000088	exon34	c.C2361T	p.S787S	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45950911	45950911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon5	c.G608A	p.R203Q	 MYCBPAP,urinary_tract,bladder,Substitution - Missense,0 	.	.
ZFP3	124961	broad.mit.edu	36	17	4936827	4936827	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153018	exon2	c.A1304G	p.E435G	.	.	.
NLRP1	22861	broad.mit.edu	36	17	5365713	5365713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033007	exon12	c.C3548T	p.S1183F	.	.	.
TEX14	56155	broad.mit.edu	36	17	54031675	54031675	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198393	exon14	c.A2030C	p.E677A	.	.	.
DVL2	1856	broad.mit.edu	36	17	7070465	7070465	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon14	c.G1761T	p.E587D	.	.	.
DVL2	1856	broad.mit.edu	36	17	7071485	7071485	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon12	c.G1325A	p.R442H	.	.	.
TRIM47	91107	broad.mit.edu	36	17	71382693	71382693	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033452	exon6	c.G1383A	p.S461S	.	.	.
EIF5A	1984	broad.mit.edu	36	17	7155424	7155424	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143761	exon4	c.T302G	p.L101R	.	.	.
SYNGR2	9144	broad.mit.edu	36	17	73678498	73678498	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004710	exon2	c.C105T	p.F35F	.	.	.
RNF213	57674	broad.mit.edu	36	17	75936073	75936073	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020914	exon30	c.G9490A	p.A3164T	.	.	.
CCDC137	339230	broad.mit.edu	36	17	77247774	77247774	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199287	exon3	c.G383A	p.R128H	.	.	.
CCDC137	339230	broad.mit.edu	36	17	77249239	77249239	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199287	exon4	c.G558A	p.R186R	.	.	.
CCDC57	284001	broad.mit.edu	36	17	77730276	77730276	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198082	exon9	c.G1290A	p.W430X	.	.	.
GAS7	8522	broad.mit.edu	36	17	9770720	9770720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003644	exon6	c.G557A	p.R186H	.	.	.
ELP2	55250	broad.mit.edu	36	18	31980309	31980309	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018255	exon11	c.G1092A	p.A364A	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42813537	42813537	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016427	exon1	c.C2097A	p.S699R	.	.	.
DCC	1630	broad.mit.edu	36	18	48846502	48846502	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon7	c.A1229G	p.Q410R	.	.	.
ZFP161	7541	broad.mit.edu	36	18	5281249	5281249	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003409	exon3	c.C958T	p.L320L	.	.	.
KDSR	2531	broad.mit.edu	36	18	59150093	59150093	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002035	exon10	c.C901T	p.R301C	.	.	.
DSEL	92126	broad.mit.edu	36	18	63330422	63330422	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032160	exon2	c.C2434T	p.R812X	.	.	.
SOCS6	9306	broad.mit.edu	36	18	66143639	66143639	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004232	exon2	c.C755T	p.A252V	.	.	.
LAMA1	284217	broad.mit.edu	36	18	7030083	7030083	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon10	c.G1414C	p.V472L	.	.	.
CNDP2	55748	broad.mit.edu	36	18	70324150	70324150	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018235	exon4	c.C291T	p.Y97Y	.	.	.
MBP	4155	broad.mit.edu	36	18	72825754	72825754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002385	exon5	c.G481A	p.D161N	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8774518	8774518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon6	c.C1408T	p.R470C	.	.	.
ZNF491	126069	broad.mit.edu	36	19	11778053	11778053	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152356	exon3	c.G285A	p.R95R	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12244628	12244628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016264	exon4	c.G1442A	p.C481Y	.	.	.
C19orf53	28974	broad.mit.edu	36	19	13749962	13749962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014047	exon3	c.G250A	p.A84T	.	.	.
OR10H2	26538	broad.mit.edu	36	19	15699976	15699976	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013939	exon1	c.C123T	p.G41G	.	.	.
BST2	684	broad.mit.edu	36	19	17375553	17375553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004335	exon4	c.C494T	p.A165V	.	.	.
SLC27A1	376497	broad.mit.edu	36	19	17473144	17473144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198580	exon11	c.G1699A	p.A567T	.	.	.
ZNF555	148254	broad.mit.edu	36	19	2804130	2804130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172775	exon4	c.G1064A	p.R355Q	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36460241	36460241	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G2298A	p.P766P	.	.	.
MLL4	9757	broad.mit.edu	36	19	40911961	40911961	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014727	exon22	c.G4841A	p.W1614X	.	.	.
ZNF345	25850	broad.mit.edu	36	19	42060213	42060213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003419	exon3	c.G641A	p.G214D	.	.	.
ZNF570	148268	broad.mit.edu	36	19	42667707	42667707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144694	exon5	c.G1343A	p.G448E	.	.	.
HNRNPL	3191	broad.mit.edu	36	19	44028452	44028452	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005335	exon3	c.G106A	p.A36T	.	.	.
PAPL	390928	broad.mit.edu	36	19	44281521	44281521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004318	exon4	c.G404A	p.R135H	.	.	.
GMFG	9535	broad.mit.edu	36	19	44517924	44517924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004877	exon2	c.G91A	p.A31T	.	.	.
TIMM50	92609	broad.mit.edu	36	19	44668246	44668246	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001563	exon6	c.G760A	p.V254I	.	.	.
SHKBP1	92799	broad.mit.edu	36	19	45780171	45780171	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138392	exon10	c.G919T	p.G307W	.	.	.
NUMBL	9253	broad.mit.edu	36	19	45880533	45880533	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004756	exon5	c.C339T	p.S113S	.	.	.
GRIK5	2901	broad.mit.edu	36	19	47238546	47238546	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002088	exon11	c.C1471T	p.R491W	.	.	.
TICAM1	148022	broad.mit.edu	36	19	4768991	4768991	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182919	exon2	c.G399T	p.L133L	.	.	.
PSG2	5670	broad.mit.edu	36	19	48267868	48267868	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031246	exon4	c.C788T	p.A263V	.	.	.
CADM4	199731	broad.mit.edu	36	19	48822825	48822825	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145296	exon4	c.C450A	p.S150S	.	.	.
PLAUR	5329	broad.mit.edu	36	19	48848227	48848227	+	Silent	SNP	G	T	T	rs4251912	byCluster;byFrequency	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005377	exon5	c.C609A	p.T203T	.	.	.
ZNF226	7769	broad.mit.edu	36	19	49373536	49373536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032372	exon6	c.G2281A	p.G761S	.	.	.
ZNF227	7770	broad.mit.edu	36	19	49431085	49431085	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182490	exon6	c.C662T	p.T221I	.	.	.
LIG1	3978	broad.mit.edu	36	19	53318319	53318319	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000234	exon22	c.C2073T	p.G691G	.	.	.
PPFIA3	8541	broad.mit.edu	36	19	54334811	54334811	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003660	exon17	c.C2151A	p.P717P	.	.	.
SAFB	6294	broad.mit.edu	36	19	5615064	5615064	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002967	exon16	c.C2185T	p.R729W	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56652751	56652751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014442	exon2	c.C509A	p.S170Y	.	.	.
LILRB2	10288	broad.mit.edu	36	19	59475105	59475105	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080978	exon5	c.A565G	p.N189D	.	.	.
LENG8	114823	broad.mit.edu	36	19	59661367	59661367	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052925	exon15	c.G2095A	p.A699T	.	.	.
NLRP11	204801	broad.mit.edu	36	19	61013423	61013423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145007	exon5	c.G365A	p.R122H	.	.	.
TRIM28	10155	broad.mit.edu	36	19	63753132	63753132	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005762	exon15	c.G2111A	p.C704Y	.	.	.
MUC16	94025	broad.mit.edu	36	19	8877998	8877998	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon27	c.C37997A	p.P12666H	.	.	.
MUC16	94025	broad.mit.edu	36	19	8935093	8935093	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C13353A	p.S4451R	.	.	.
CRTC1	23373	broad.mit.edu	36	19	18748993	18748993	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015321	exon14	c.1706delC	p.S569fs	.	.	.
SAFB2	9667	broad.mit.edu	36	19	5538282	5538282	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014649	exon21	c.2834delC	p.P945fs	.	.	.
WDR47	22911	broad.mit.edu	36	1	109325985	109325985	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014969	exon13	c.G2294A	p.W765X	.	.	.
KCND3	3752	broad.mit.edu	36	1	112325923	112325923	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon2	c.T949C	p.C317R	.	.	.
KCND3	3752	broad.mit.edu	36	1	112326218	112326218	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004980	exon2	c.C654T	p.C218C	.	.	.
MTHFR	4524	broad.mit.edu	36	1	11777437	11777437	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005957	exon7	c.G1102T	p.A368S	.	.	.
MTHFR	4524	broad.mit.edu	36	1	11777984	11777984	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005957	exon6	c.C789A	p.H263Q	.	.	.
SNX27	81609	broad.mit.edu	36	1	149878094	149878094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030918	exon2	c.G418A	p.A140T	.	.	.
FLG	2312	broad.mit.edu	36	1	150546368	150546368	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C7618T	p.R2540W	.	.	.
INTS3	65123	broad.mit.edu	36	1	152012117	152012117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023015	exon29	c.G2987A	p.R996Q	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152576524	152576524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005855	exon12	c.G914A	p.R305H	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153297162	153297162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_207195	exon14	c.C1628T	p.A543V	.	.	.
GPATCH4	54865	broad.mit.edu	36	1	154832511	154832511	+	Silent	SNP	C	T	T	rs8937	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015590	exon7	c.G477A	p.G159G	.	.	.
CDK11B	984	broad.mit.edu	36	1	1562176	1562176	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033486	exon16	c.C1740A	p.T580T	.	.	.
APCS	325	broad.mit.edu	36	1	157824578	157824578	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001639	exon2	c.C128T	p.T43I	.	.	.
DDI2	84301	broad.mit.edu	36	1	15837417	15837417	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032341	exon5	c.A661T	p.I221L	.	.	.
LY9	4063	broad.mit.edu	36	1	159050261	159050261	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002348	exon3	c.C666T	p.C222C	.	.	.
MGST3	4259	broad.mit.edu	36	1	163891246	163891246	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004528	exon6	c.C340T	p.R114X	.	.	.
C1orf89	79363	broad.mit.edu	36	1	16432819	16432819	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030907	exon2	c.C140T	p.P47L	.	.	.
DUSP27	92235	broad.mit.edu	36	1	165364176	165364176	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080426	exon5	c.T3184C	p.W1062R	.	.	.
MYOC	4653	broad.mit.edu	36	1	169871889	169871889	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000261	exon3	c.C1314T	p.T438T	.	.	.
ANKRD45	339416	broad.mit.edu	36	1	171882678	171882678	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198493	exon3	c.G426A	p.R142R	.	.	.
TNN	63923	broad.mit.edu	36	1	173359166	173359166	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon12	c.C2658T	p.D886D	.	.	.
CEP350	9857	broad.mit.edu	36	1	178232513	178232513	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014810	exon6	c.C598T	p.R200X	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180026288	180026288	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon44	c.C5871T	p.D1957D	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184381548	184381548	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon93	c.C14478T	p.C4826C	.	.	.
TROVE2	6738	broad.mit.edu	36	1	191318030	191318030	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173524	exon7	c.A1295G	p.Q432R	.	.	.
NAV1	89796	broad.mit.edu	36	1	200048922	200048922	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167738	exon25	c.C4071T	p.G1357G	.	.	.
MDM4	4194	broad.mit.edu	36	1	202782576	202782576	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002393	exon10	c.T851C	p.L284P	.	.	.
LGTN	1939	broad.mit.edu	36	1	204842327	204842327	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006893	exon7	c.C888T	p.H296H	.	.	.
CAMK1G	57172	broad.mit.edu	36	1	207840039	207840039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020439	exon3	c.C181T	p.R61W	.	.	.
LAMB3	3914	broad.mit.edu	36	1	207869879	207869879	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017402	exon9	c.G958A	p.G320R	.	.	.
FLVCR1	28982	broad.mit.edu	36	1	211129132	211129132	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014053	exon8	c.T1435C	p.L479L	.	.	.
MARK1	4139	broad.mit.edu	36	1	218839794	218839794	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018650	exon5	c.G390A	p.K130K	.	.	.
DUSP10	11221	broad.mit.edu	36	1	219978944	219978944	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007207	exon2	c.C766A	p.L256I	.	.	.
ACTA1	58	broad.mit.edu	36	1	227635421	227635421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100	exon2	c.G65A	p.G22D	.	.	.
NUP133	55746	broad.mit.edu	36	1	227679991	227679991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018230	exon13	c.C1732T	p.R578W	.	.	.
NID1	4811	broad.mit.edu	36	1	234255854	234255854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon8	c.G1949A	p.R650H	.	.	.
ACTN2	88	broad.mit.edu	36	1	234972946	234972946	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103	exon11	c.C1235T	p.T412M	.	.	.
PLD5	200150	broad.mit.edu	36	1	240518413	240518413	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195811	exon3	c.A183G	p.S61S	.	.	.
IL28RA	163702	broad.mit.edu	36	1	24368556	24368556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170743	exon3	c.C305T	p.T102M	.	.	.
FAM76A	199870	broad.mit.edu	36	1	27933253	27933253	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143913	exon5	c.C428T	p.A143V	.	.	.
CCDC27	148870	broad.mit.edu	36	1	3670206	3670206	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152492	exon8	c.G1398A	p.T466T	.	.	.
KIAA0562	9731	broad.mit.edu	36	1	3751363	3751363	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014704	exon6	c.C534T	p.S178S	.	.	.
RHBDL2	54933	broad.mit.edu	36	1	39134306	39134306	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017821	exon5	c.T531C	p.F177F	.	.	.
KLF17	128209	broad.mit.edu	36	1	44368929	44368929	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173484	exon3	c.C1084T	p.Q362X	.	.	.
LRRC41	10489	broad.mit.edu	36	1	46523855	46523855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006369	exon4	c.G1261A	p.A421T	.	.	.
MOBKL2C	148932	broad.mit.edu	36	1	46851168	46851168	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145279	exon2	c.G569A	p.R190H	.	.	.
CYP4B1	1580	broad.mit.edu	36	1	47053491	47053491	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099772	exon8	c.C1041T	p.R347R	.	.	.
DAB1	1600	broad.mit.edu	36	1	57374900	57374900	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021080	exon6	c.C210T	p.G70G	.	.	.
TNNI3K	51086	broad.mit.edu	36	1	74782220	74782220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015978	exon25	c.G2474A	p.C825Y	.	.	.
CRYZ	1429	broad.mit.edu	36	1	74961507	74961507	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001889	exon3	c.C147T	p.P49P	.	.	.
SNX5	27131	broad.mit.edu	36	20	17876269	17876269	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152227	exon12	c.C939T	p.T313T	.	.	.
C20orf3	57136	broad.mit.edu	36	20	24900173	24900173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020531	exon5	c.G461A	p.G154D	.	.	.
VSX1	30813	broad.mit.edu	36	20	25008112	25008112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_199425	exon2	c.G463A	p.A155T	.	.	.
ZNF337	26152	broad.mit.edu	36	20	25604779	25604779	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015655	exon5	c.A1145C	p.K382T	.	.	.
MYLK2	85366	broad.mit.edu	36	20	29882350	29882350	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033118	exon9	c.G1292A	p.R431Q	.	.	.
FAM83C	128876	broad.mit.edu	36	20	33338795	33338795	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178468	exon4	c.C1201T	p.P401S	.	.	.
CEP250	11190	broad.mit.edu	36	20	33555181	33555181	+	Missense_Mutation	SNP	G	A	A	rs73903079	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon30	c.G5570A	p.R1857H	.	.	.
CHD6	84181	broad.mit.edu	36	20	39576913	39576913	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon4	c.T647C	p.L216P	.	.	.
KCNB1	3745	broad.mit.edu	36	20	47423233	47423233	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004975	exon2	c.C2271T	p.D757D	.	.	.
MYT1	4661	broad.mit.edu	36	20	62307390	62307390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004535	exon6	c.G190T	p.G64C	.	.	.
PLCB4	5332	broad.mit.edu	36	20	9365789	9365789	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000933	exon26	c.A2718T	p.E906D	.	.	.
CTSA	5476	broad.mit.edu	36	20	43957075	43957075	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000308	exon11	c.1038delC	p.D346fs	.	.	.
CTCFL	140690	broad.mit.edu	36	20	55532323	55532324	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080618	exon2	c.344_345del	p.115_115del	.	.	.
MORC3	23515	broad.mit.edu	36	21	36633049	36633049	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015358	exon5	c.G568T	p.G190C	.	.	.
ABCG1	9619	broad.mit.edu	36	21	42575535	42575535	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207629	exon6	c.G662A	p.R221H	.	.	.
RSPH1	89765	broad.mit.edu	36	21	42779579	42779579	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080860	exon4	c.C336A	p.T112T	.	.	.
KRTAP10-6	386674	broad.mit.edu	36	21	44836733	44836733	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198688	exon1	c.C61A	p.L21I	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46742962	46742962	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146114	exon3	c.G251A	p.R84Q	.	.	.
SUMO3	6612	broad.mit.edu	36	21	45053343	45053343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
CDC45	8318	broad.mit.edu	36	22	17863525	17863525	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178010	exon8	c.C660T	p.Y220Y	.	.	.
GNB1L	54584	broad.mit.edu	36	22	18169724	18169724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053004	exon7	c.C532T	p.R178C	.	.	.
BCR	613	broad.mit.edu	36	22	21985111	21985111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021574	exon19	c.C3228T	p.D1076D	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23166882	23166882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000675	exon3	c.C664T	p.R222W	.	.	.
SLC35E4	339665	broad.mit.edu	36	22	29372911	29372911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001479	exon2	c.G946A	p.A316T	.	.	.
SUN2	25777	broad.mit.edu	36	22	37474713	37474713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015374	exon7	c.G636A	p.T212T	.	.	.
PRR5-ARHGAP8	553158	broad.mit.edu	36	22	43600086	43600086	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181334	exon10	c.C911A	p.P304Q	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48664049	48664049	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014838	exon2	c.C735T	p.C245C	.	.	.
RRP7A	27341	broad.mit.edu	36	22	41242123	41242123	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FAM123C	205147	broad.mit.edu	36	2	131236309	131236310	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105193	exon2	c.194_195insC	p.C65fs	.	.	.
UXS1	80146	broad.mit.edu	36	2	106128186	106128186	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025076	exon6	c.G349A	p.V117M	.	.	.
MERTK	10461	broad.mit.edu	36	2	112502506	112502506	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006343	exon19	c.G2594A	p.R865Q	.	.	.
MARCO	8685	broad.mit.edu	36	2	119468561	119468561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006770	exon17	c.G1558A	p.V520I	.	.	.
YSK4	80122	broad.mit.edu	36	2	135461665	135461665	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025052	exon7	c.C1247A	p.A416D	.	.	.
MBD5	55777	broad.mit.edu	36	2	148959949	148959949	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon11	c.C3014A	p.A1005D	.	.	.
TANK	10010	broad.mit.edu	36	2	161744483	161744483	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199135	exon2	c.G64A	p.D22N	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165259647	165259647	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014900	exon12	c.G2615A	p.G872D	.	.	.
CSRNP3	80034	broad.mit.edu	36	2	166222572	166222572	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172173	exon5	c.T204C	p.S68S	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167816076	167816076	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C9262G	p.Q3088E	.	.	.
LRP2	4036	broad.mit.edu	36	2	169752798	169752798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon49	c.C9256T	p.R3086C	.	.	.
FASTKD1	79675	broad.mit.edu	36	2	170111414	170111414	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024622	exon8	c.C1261T	p.R421C	.	.	.
METTL5	29081	broad.mit.edu	36	2	170385999	170385999	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014168	exon3	c.C255T	p.D85D	.	.	.
ATF2	1386	broad.mit.edu	36	2	175647703	175647703	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001880	exon14	c.C1398A	p.T466T	.	.	.
TTN	7273	broad.mit.edu	36	2	179285125	179285125	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon93	c.G23945T	p.C7982F	.	.	.
SF3B1	23451	broad.mit.edu	36	2	197982793	197982793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012433	exon7	c.G850A	p.A284T	.	.	.
PTH2R	5746	broad.mit.edu	36	2	209061988	209061988	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005048	exon11	c.G1083T	p.L361L	.	.	.
LANCL1	10314	broad.mit.edu	36	2	211028110	211028110	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136574	exon4	c.A373G	p.N125D	.	.	.
SLC11A1	6556	broad.mit.edu	36	2	218957249	218957249	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000578	exon3	c.C190G	p.P64A	.	.	.
FAM134A	79137	broad.mit.edu	36	2	219755302	219755302	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024293	exon9	c.G1339A	p.G447S	.	.	.
ACCN4	55515	broad.mit.edu	36	2	220110262	220110262	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018674	exon8	c.T1757C	p.L586P	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228589661	228589661	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.T4153A	p.S1385T	.	.	.
ATG16L1	55054	broad.mit.edu	36	2	233837448	233837448	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017974	exon4	c.A387G	p.A129A	.	.	.
TRPM8	79054	broad.mit.edu	36	2	234543693	234543693	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024080	exon17	c.G2239A	p.A747T	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237952228	237952228	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057167	exon5	c.G1669A	p.A557T	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24804717	24804717	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon14	c.T2754C	p.C918C	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25323093	25323093	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175629	exon10	c.T1179C	p.S393S	.	.	.
DNMT3A	1788	broad.mit.edu	36	2	25324424	25324424	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175629	exon7	c.G841A	p.E281K	.	.	.
CCDC121	79635	broad.mit.edu	36	2	27704092	27704092	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142683	exon2	c.C565T	p.R189X	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31069331	31069331	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024572	exon2	c.G176A	p.R59Q	.	.	.
THADA	63892	broad.mit.edu	36	2	43311864	43311864	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083953	exon38	c.A5589G	p.P1863P	.	.	.
TSPYL6	388951	broad.mit.edu	36	2	54336277	54336277	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003937	exon1	c.C516T	p.D172D	.	.	.
B3GNT2	10678	broad.mit.edu	36	2	62303354	62303354	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006577	exon2	c.G495T	p.W165C	.	.	.
OTX1	5013	broad.mit.edu	36	2	63136859	63136859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199770	exon5	c.C969T	p.G323G	.	.	.
PELI1	57162	broad.mit.edu	36	2	64175738	64175738	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020651	exon7	c.A859G	p.N287D	.	.	.
AAK1	22848	broad.mit.edu	36	2	69576644	69576644	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014911	exon17	c.C2342A	p.P781H	.	.	.
SMYD5	10322	broad.mit.edu	36	2	73300791	73300791	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006062	exon3	c.C310T	p.R104C	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79954749	79954749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon6	c.G625A	p.A209T	.	.	.
TGOLN2	10618	broad.mit.edu	36	2	85407621	85407621	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006464	exon2	c.C745A	p.P249T	.	.	.
ELMOD3	84173	broad.mit.edu	36	2	85470860	85470860	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135021	exon14	c.C904T	p.Q302X	.	.	.
SFTPB	6439	broad.mit.edu	36	2	85746328	85746328	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198843	exon6	c.G530A	p.R177Q	.	.	.
ACTR1B	10120	broad.mit.edu	36	2	97641424	97641424	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005735	exon6	c.T555C	p.I185I	.	.	.
REV1	51455	broad.mit.edu	36	2	99386590	99386590	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016316	exon19	c.G3166T	p.V1056L	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148400156	148400156	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon10	c.1303delA	p.K435fs	.	.	.
GPR156	165829	broad.mit.edu	36	3	121382698	121382698	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168271	exon7	c.T885C	p.C295C	.	.	.
KBTBD12	166348	broad.mit.edu	36	3	129125542	129125542	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207335	exon1	c.C948T	p.Y316Y	.	.	.
IQSEC1	9922	broad.mit.edu	36	3	12925917	12925917	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014869	exon11	c.C2476T	p.R826W	.	.	.
SEC61A1	29927	broad.mit.edu	36	3	129266475	129266475	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013336	exon8	c.C682T	p.R228X	.	.	.
C3orf25	90288	broad.mit.edu	36	3	130610377	130610377	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207307	exon6	c.C1050T	p.S350S	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133661888	133661888	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon14	c.T1554C	p.H518H	.	.	.
SERPINI1	5274	broad.mit.edu	36	3	168989852	168989852	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122752	exon2	c.T242A	p.L81Q	.	.	.
LRRC31	79782	broad.mit.edu	36	3	171048602	171048602	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024727	exon8	c.G1327T	p.A443S	.	.	.
TNFSF10	8743	broad.mit.edu	36	3	173709779	173709779	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003810	exon4	c.G340A	p.V114M	.	.	.
TTC14	151613	broad.mit.edu	36	3	181803381	181803381	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133462	exon2	c.A170T	p.K57M	.	.	.
ECE2	9718	broad.mit.edu	36	3	185477444	185477444	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon3	c.C551A	p.A184D	.	.	.
ECE2	9718	broad.mit.edu	36	3	185477805	185477805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014693	exon4	c.G689A	p.R230Q	.	.	.
CHRD	8646	broad.mit.edu	36	3	185588427	185588427	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003741	exon20	c.G2466T	p.E822D	.	.	.
MASP1	5648	broad.mit.edu	36	3	188486481	188486481	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031849	exon2	c.C63T	p.T21T	.	.	.
CRTAP	10491	broad.mit.edu	36	3	33150682	33150682	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006371	exon6	c.C1073A	p.A358E	.	.	.
XIRP1	165904	broad.mit.edu	36	3	39203614	39203614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194293	exon2	c.G2327A	p.R776Q	.	.	.
KBTBD5	131377	broad.mit.edu	36	3	42703092	42703092	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152393	exon1	c.G978T	p.E326D	.	.	.
FYCO1	79443	broad.mit.edu	36	3	45983503	45983503	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024513	exon8	c.C2327T	p.A776V	.	.	.
ITPR1	3708	broad.mit.edu	36	3	4687493	4687493	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099952	exon20	c.A2087G	p.E696G	.	.	.
COL7A1	1294	broad.mit.edu	36	3	48582603	48582603	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000094	exon98	c.C7453T	p.R2485C	.	.	.
IMPDH2	3615	broad.mit.edu	36	3	49037097	49037097	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000884	exon12	c.C1438T	p.R480X	.	.	.
IP6K1	9807	broad.mit.edu	36	3	49740642	49740642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153273	exon5	c.G690A	p.R230R	.	.	.
CAMKV	79012	broad.mit.edu	36	3	49872118	49872118	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024046	exon11	c.C1143T	p.P381P	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51287556	51287556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon25	c.G2514A	p.P838P	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51367484	51367484	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon41	c.C4198T	p.R1400X	.	.	.
RRP9	9136	broad.mit.edu	36	3	51943720	51943720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004704	exon12	c.G1147A	p.A383T	.	.	.
TWF2	11344	broad.mit.edu	36	3	52241000	52241000	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007284	exon3	c.C282A	p.P94P	.	.	.
PHF7	51533	broad.mit.edu	36	3	52432302	52432302	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016483	exon11	c.C1075T	p.R359C	.	.	.
ERC2	26059	broad.mit.edu	36	3	55959537	55959537	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015576	exon12	c.C2353T	p.R785C	.	.	.
C3orf67	200844	broad.mit.edu	36	3	58828678	58828678	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198463	exon10	c.C665T	p.P222L	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78749572	78749572	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon27	c.C4185A	p.G1395G	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89563075	89563075	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon13	c.G2222A	p.G741D	.	.	.
HADH	3033	broad.mit.edu	36	4	109173866	109173866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184705	exon8	c.C846T	p.V282V	.	.	.
ANK2	287	broad.mit.edu	36	4	114494228	114494228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001148	exon38	c.C5005T	p.L1669L	.	.	.
NDST4	64579	broad.mit.edu	36	4	116075856	116075856	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022569	exon6	c.A1491C	p.K497N	.	.	.
NDST3	9348	broad.mit.edu	36	4	119194845	119194845	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004784	exon2	c.C332T	p.A111V	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119456810	119456810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003619	exon6	c.G1267A	p.V423M	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123494544	123494544	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon80	c.C14227T	p.R4743C	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153471357	153471357	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon6	c.C859T	p.R287X	 FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 	.	.
DCHS2	54798	broad.mit.edu	36	4	155474007	155474007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142552	exon5	c.C2803T	p.R935W	.	.	.
TAPT1	202018	broad.mit.edu	36	4	15797594	15797594	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153365	exon6	c.C754T	p.H252Y	.	.	.
GLRB	2743	broad.mit.edu	36	4	158261224	158261224	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166060	exon3	c.A189G	p.L63L	.	.	.
RAPGEF2	9693	broad.mit.edu	36	4	160496721	160496721	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014247	exon23	c.G4435A	p.A1479T	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162796980	162796980	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020116	exon7	c.T844A	p.W282R	.	.	.
AGA	175	broad.mit.edu	36	4	178600523	178600523	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171988	exon1	c.A1G	p.M1V	.	.	.
MTNR1A	4543	broad.mit.edu	36	4	187692380	187692380	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005958	exon2	c.C510T	p.Y170Y	.	.	.
GPR125	166647	broad.mit.edu	36	4	21999816	21999816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145290	exon18	c.G2716A	p.A906T	.	.	.
TLR10	81793	broad.mit.edu	36	4	38452198	38452198	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030956	exon4	c.A1409G	p.E470G	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47232724	47232724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon7	c.G932A	p.R311H	.	.	.
FRYL	285527	broad.mit.edu	36	4	48207638	48207638	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015030	exon58	c.T8266C	p.C2756R	.	.	.
STK32B	55351	broad.mit.edu	36	4	5512830	5512830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018401	exon9	c.G883A	p.A295T	.	.	.
KIAA1211	57482	broad.mit.edu	36	4	56876411	56876411	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020722	exon8	c.G1986A	p.A662A	.	.	.
EPHA5	2044	broad.mit.edu	36	4	65913488	65913488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004439	exon12	c.G2078A	p.R693H	.	.	.
TMPRSS11F	389208	broad.mit.edu	36	4	68613202	68613202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207407	exon8	c.G811A	p.A271T	.	.	.
YTHDC1	91746	broad.mit.edu	36	4	68871069	68871069	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031732	exon11	c.G1594A	p.V532M	.	.	.
ANKRD17	26057	broad.mit.edu	36	4	74182742	74182742	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198889	exon25	c.A4180G	p.T1394A	.	.	.
AFP	174	broad.mit.edu	36	4	74537047	74537047	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134	exon12	c.C1494T	p.G498G	.	.	.
ZNF595	152687	broad.mit.edu	36	4	76252	76252	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182524	exon4	c.T857C	p.V286A	.	.	.
FRAS1	80144	broad.mit.edu	36	4	79640022	79640022	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025074	exon61	c.G9239A	p.R3080H	.	.	.
IBSP	3381	broad.mit.edu	36	4	88951933	88951933	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004967	exon7	c.C801A	p.G267G	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96271554	96271554	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001203	exon10	c.T944C	p.L315S	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11212846	11212846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon12	c.C2001T	p.C667C	.	.	.
SLC22A4	6583	broad.mit.edu	36	5	131699527	131699527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003059	exon8	c.C1379T	p.A460V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13790378	13790378	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon66	c.G11438A	p.R3813Q	.	.	.
LRRTM2	26045	broad.mit.edu	36	5	138237481	138237481	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015564	exon2	c.C668T	p.A223V	.	.	.
PCDHA10	56139	broad.mit.edu	36	5	140216650	140216650	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031860	exon1	c.A833G	p.Y278C	.	.	.
PCDHA11	56138	broad.mit.edu	36	5	140229920	140229920	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031861	exon1	c.G1048A	p.A350T	.	.	.
PCDHA12	56137	broad.mit.edu	36	5	140235944	140235944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031864	exon1	c.G703A	p.V235M	.	.	.
PCDHAC1	56135	broad.mit.edu	36	5	140286941	140286941	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031882	exon1	c.G280A	p.V94I	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140496578	140496578	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.C1378T	p.R460X	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141009204	141009204	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033449	exon5	c.G317A	p.R106Q	.	.	.
ARAP3	64411	broad.mit.edu	36	5	141039512	141039512	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022481	exon3	c.G586T	p.V196L	.	.	.
TRIO	7204	broad.mit.edu	36	5	14561201	14561201	+	Silent	SNP	C	T	T	rs55898643	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon57	c.C8964T	p.G2988G	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147020906	147020906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon3	c.G425A	p.R142Q	.	.	.
ABLIM3	22885	broad.mit.edu	36	5	148566780	148566780	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014945	exon6	c.G465T	p.K155N	.	.	.
ARSI	340075	broad.mit.edu	36	5	149657176	149657176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012301	exon2	c.G1504A	p.V502I	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154375405	154375405	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.G1793A	p.R598H	.	.	.
TTC1	7265	broad.mit.edu	36	5	159370215	159370215	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003314	exon2	c.T102C	p.P34P	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167477977	167477977	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon10	c.A1916G	p.Q639R	.	.	.
CNOT6	57472	broad.mit.edu	36	5	179925478	179925478	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015455	exon7	c.G612A	p.R204R	.	.	.
ADAMTS16	170690	broad.mit.edu	36	5	5359763	5359763	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139056	exon21	c.G3333A	p.P1111P	.	.	.
PDE4D	5144	broad.mit.edu	36	5	58307946	58307946	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001197222	exon8	c.C1146T	p.S382S	.	.	.
NSUN2	54888	broad.mit.edu	36	5	6660320	6660320	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017755	exon13	c.G1501A	p.V501M	.	.	.
PIK3R1	5295	broad.mit.edu	36	5	67623923	67623923	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181523	exon7	c.T997A	p.W333R	.	.	.
GTF2H2C	728340	broad.mit.edu	36	5	68904050	68904050	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098728	exon8	c.G387A	p.T129T	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71525796	71525796	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.C858T	p.G286G	.	.	.
FAM169A	26049	broad.mit.edu	36	5	74132560	74132560	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015566	exon10	c.G1004A	p.R335Q	.	.	.
ADCY2	108	broad.mit.edu	36	5	7467706	7467706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon2	c.G231A	p.A77A	.	.	.
OTP	23440	broad.mit.edu	36	5	76968425	76968425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032109	exon2	c.G424A	p.G142R	.	.	.
HAPLN1	1404	broad.mit.edu	36	5	82973197	82973197	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001884	exon5	c.C939T	p.S313S	.	.	.
GPR98	84059	broad.mit.edu	36	5	90094968	90094968	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon59	c.C12211T	p.R4071X	.	.	.
FCHO2	115548	broad.mit.edu	36	5	72300085	72300085	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001146032	exon2	c.38delA	p.E13fs	.	.	.
TAPBP	6892	broad.mit.edu	36	6	33381050	33381051	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003190	exon4	c.562_563insC	p.T188fs	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810407	121810407	+	Missense_Mutation	SNP	C	T	T	rs2227887	byFrequency	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000165	exon2	c.C715T	p.R239W	.	.	.
NCOA7	135112	broad.mit.edu	36	6	126252663	126252663	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199620	exon11	c.G1770A	p.P590P	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128175746	128175746	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010923	exon4	c.C1733T	p.T578M	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129870476	129870476	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon61	c.A8841C	p.K2947N	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152644728	152644728	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon12	c.C1860A	p.D620E	.	.	.
RBM16	22828	broad.mit.edu	36	6	155195189	155195189	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014892	exon20	c.G2784A	p.P928P	.	.	.
TULP4	56995	broad.mit.edu	36	6	158844368	158844368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020245	exon13	c.C3685T	p.P1229S	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161438122	161438122	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon16	c.C3448T	p.R1150C	.	.	.
GPLD1	2822	broad.mit.edu	36	6	24545378	24545378	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001503	exon21	c.C2139T	p.R713R	.	.	.
HIST1H4E	8367	broad.mit.edu	36	6	26313076	26313076	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003545	exon1	c.G225A	p.E75E	.	.	.
GABBR1	2550	broad.mit.edu	36	6	29680389	29680389	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021904	exon21	c.G2387A	p.R796H	.	.	.
HLA-E	3133	broad.mit.edu	36	6	30568316	30568316	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005516	exon7	c.G1056T	p.G352G	.	.	.
C6orf15	29113	broad.mit.edu	36	6	31188016	31188016	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014070	exon2	c.G99T	p.E33D	.	.	.
ANKS1A	23294	broad.mit.edu	36	6	35155291	35155291	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015245	exon15	c.C2304T	p.D768D	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35911115	35911115	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon16	c.C1912G	p.P638A	.	.	.
CUL9	23113	broad.mit.edu	36	6	43261261	43261261	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon3	c.C685T	p.L229L	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51983110	51983110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon35	c.G5707A	p.V1903I	.	.	.
DSP	1832	broad.mit.edu	36	6	7528616	7528616	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008844	exon24	c.G4325A	p.S1442N	.	.	.
FAM46A	55603	broad.mit.edu	36	6	82516173	82516173	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017633	exon3	c.G1287A	p.T429T	.	.	.
HTR1E	3354	broad.mit.edu	36	6	87782393	87782393	+	Missense_Mutation	SNP	G	A	A	rs3828741	byCluster;byFrequency;byHapMap	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000865	exon2	c.G622A	p.A208T	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16435892	16435894	+	In_Frame_Del	DEL	TGA	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	TGA	TGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000332	exon8	c.627_629del	p.209_210del	.	.	.
KCTD20	222658	broad.mit.edu	36	6	36560554	36560554	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173562	exon7	c.942delA	p.L314fs	.	.	.
ZNF292	23036	broad.mit.edu	36	6	87985077	87985077	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015021	exon4	c.447delT	p.H149fs	.	.	.
DNAJC2	27000	broad.mit.edu	36	7	102772267	102772267	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001129887	exon1	c.C39T	p.T13T	.	.	.
RELN	5649	broad.mit.edu	36	7	102947014	102947014	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon49	c.T7854C	p.S2618S	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106296575	106296575	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G1333A	p.A445T	 PIK3CG,central_nervous_system,brain,Substitution - Missense,-1 	.	.
GPR22	2845	broad.mit.edu	36	7	106902900	106902900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005295	exon3	c.G1159A	p.V387I	.	.	.
DOCK4	9732	broad.mit.edu	36	7	111192472	111192472	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014705	exon38	c.C3931T	p.R1311C	.	.	.
RBM28	55131	broad.mit.edu	36	7	127751936	127751936	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166135	exon8	c.G828A	p.A276A	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131516695	131516695	+	Silent	SNP	C	T	T	rs10248377	byCluster;byFrequency;byHapMap	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon18	c.G3477A	p.T1159T	.	.	.
CALD1	800	broad.mit.edu	36	7	134268656	134268656	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033157	exon5	c.A596C	p.K199T	.	.	.
TRIM24	8805	broad.mit.edu	36	7	137914763	137914763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003852	exon15	c.G2429A	p.C810Y	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
HDAC9	9734	broad.mit.edu	36	7	18591528	18591528	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178423	exon3	c.T122A	p.V41D	.	.	.
HOXA2	3199	broad.mit.edu	36	7	27107287	27107287	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006735	exon2	c.C714T	p.S238S	.	.	.
HOXA3	3200	broad.mit.edu	36	7	27114836	27114836	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030661	exon3	c.G555A	p.P185P	.	.	.
RP9	6100	broad.mit.edu	36	7	33102649	33102649	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203288	exon5	c.C448T	p.R150X	.	.	.
INHBA	3624	broad.mit.edu	36	7	41696301	41696301	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon3	c.C753T	p.G251G	.	.	.
AEBP1	165	broad.mit.edu	36	7	44118289	44118289	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129	exon17	c.G2061A	p.A687A	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4747075	4747075	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037165	exon2	c.C641T	p.P214L	.	.	.
DTX2	113878	broad.mit.edu	36	7	75950163	75950163	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102595	exon3	c.A671G	p.Y224C	.	.	.
CYP3A5	1577	broad.mit.edu	36	7	99083939	99083939	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000777	exon13	c.G1434A	p.T478T	.	.	.
IQCE	23288	broad.mit.edu	36	7	2596260	2596261	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	AG	AG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152558	exon14	c.1238_1239del	p.413_413del	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10502188	10502188	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon4	c.C6830A	p.P2277H	.	.	.
TTC35	9694	broad.mit.edu	36	8	109531865	109531865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014673	exon3	c.G187A	p.A63T	.	.	.
PTK2	5747	broad.mit.edu	36	8	141780199	141780199	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199649	exon26	c.C2472T	p.R824R	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143954155	143954155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001026213	exon6	c.C1096T	p.R366C	.	.	.
DLGAP2	9228	broad.mit.edu	36	8	1484965	1484965	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004745	exon2	c.C699T	p.S233S	.	.	.
BMP1	649	broad.mit.edu	36	8	22087115	22087115	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006129	exon2	c.A204G	p.V68V	.	.	.
CSMD1	64478	broad.mit.edu	36	8	2819519	2819519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_033225	exon56	c.C8602T	p.R2868C	.	.	.
KIF13B	23303	broad.mit.edu	36	8	29036854	29036854	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015254	exon28	c.G3427A	p.A1143T	.	.	.
PRKDC	5591	broad.mit.edu	36	8	49008196	49008196	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081640	exon16	c.C1713T	p.S571S	.	.	.
OTUD6B	51633	broad.mit.edu	36	8	92165498	92165498	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016023	exon6	c.867delA	p.S289fs	.	.	.
ACTL7A	10881	broad.mit.edu	36	9	110664614	110664614	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006687	exon1	c.C191A	p.P64H	.	.	.
CTNNAL1	8727	broad.mit.edu	36	9	110785260	110785260	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003798	exon6	c.A886T	p.I296F	.	.	.
KIAA0368	23392	broad.mit.edu	36	9	113199165	113199165	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080398	exon26	c.G3276A	p.W1092X	.	.	.
OR1K1	392392	broad.mit.edu	36	9	124602838	124602838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080859	exon1	c.G616A	p.A206T	.	.	.
RALGPS1	9649	broad.mit.edu	36	9	129014819	129014819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014636	exon16	c.C1446T	p.H482H	.	.	.
FAM129B	64855	broad.mit.edu	36	9	129325833	129325833	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022833	exon5	c.G535A	p.E179K	.	.	.
CCBL1	883	broad.mit.edu	36	9	130637674	130637674	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122672	exon9	c.C799T	p.R267C	.	.	.
USP20	10868	broad.mit.edu	36	9	131670175	131670175	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008563	exon11	c.C761T	p.T254M	.	.	.
OLFM1	10439	broad.mit.edu	36	9	137151446	137151446	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014279	exon6	c.G1005A	p.S335S	.	.	.
ARRDC1	92714	broad.mit.edu	36	9	139628385	139628385	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152285	exon5	c.T516C	p.T172T	.	.	.
CER1	9350	broad.mit.edu	36	9	14710297	14710297	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005454	exon2	c.G595A	p.A199T	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17330874	17330874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017738	exon11	c.G1694A	p.R565Q	.	.	.
LINGO2	158038	broad.mit.edu	36	9	27940324	27940324	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152570	exon7	c.C346T	p.R116C	.	.	.
GBA2	57704	broad.mit.edu	36	9	35730287	35730287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020944	exon7	c.G1202A	p.R401Q	.	.	.
PGM5	5239	broad.mit.edu	36	9	70284223	70284223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021965	exon8	c.G1229A	p.R410Q	.	.	.
RASEF	158158	broad.mit.edu	36	9	84801782	84801782	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152573	exon14	c.T1885G	p.F629V	.	.	.
RASEF	158158	broad.mit.edu	36	9	84805280	84805280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152573	exon11	c.C1463T	p.T488I	.	.	.
WWC3	55841	broad.mit.edu	36	X	10022212	10022212	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015691	exon7	c.C548T	p.S183F	.	.	.
NRK	203447	broad.mit.edu	36	X	105018990	105018990	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon5	c.C300T	p.Y100Y	.	.	.
ATG4A	115201	broad.mit.edu	36	X	107264280	107264280	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178270	exon6	c.A450G	p.T150T	.	.	.
DCAF12L1	139170	broad.mit.edu	36	X	125513120	125513120	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178470	exon1	c.G1153A	p.E385K	.	.	.
FGF13	2258	broad.mit.edu	36	X	137620727	137620727	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004114	exon1	c.G105T	p.K35N	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140796923	140796923	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138702	exon4	c.T584G	p.L195R	.	.	.
IDS	3423	broad.mit.edu	36	X	148387706	148387706	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006123	exon5	c.T545A	p.L182Q	.	.	.
GABRQ	55879	broad.mit.edu	36	X	151566272	151566272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018558	exon4	c.C514T	p.R172W	.	.	.
MPP1	4354	broad.mit.edu	36	X	153667805	153667805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002436	exon6	c.C545T	p.A182V	.	.	.
SPRY3	10251	broad.mit.edu	36	X	154657212	154657212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005840	exon2	c.G485A	p.R162H	.	.	.
ARSE	415	broad.mit.edu	36	X	2866245	2866245	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000047	exon9	c.C1180T	p.R394C	.	.	.
MAGEB4	4115	broad.mit.edu	36	X	30170903	30170903	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002367	exon1	c.C730T	p.L244F	.	.	.
MAGEB1	4112	broad.mit.edu	36	X	30178585	30178585	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002363	exon4	c.G54A	p.A18A	.	.	.
DMD	1756	broad.mit.edu	36	X	31134695	31134695	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004015	exon5	c.G370T	p.G124W	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3250232	3250232	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.G3494A	p.R1165Q	.	.	.
TBC1D25	4943	broad.mit.edu	36	X	48288341	48288341	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002536	exon3	c.G374A	p.R125Q	.	.	.
ERAS	3266	broad.mit.edu	36	X	48572767	48572767	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181532	exon1	c.C290T	p.A97V	.	.	.
KCND1	3750	broad.mit.edu	36	X	48708417	48708417	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004979	exon2	c.T1162G	p.F388V	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48723166	48723166	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020137	exon18	c.C1662T	p.H554H	.	.	.
AKAP4	8852	broad.mit.edu	36	X	49845532	49845532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003886	exon5	c.C572T	p.P191L	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51654549	51654549	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005333	exon3	c.C132T	p.C44C	.	.	.
WNK3	65267	broad.mit.edu	36	X	54337970	54337970	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002838	exon8	c.A1434G	p.K478K	.	.	.
FAM123B	139285	broad.mit.edu	36	X	63327954	63327954	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152424	exon2	c.G1938A	p.R646R	.	.	.
ZC4H2	55906	broad.mit.edu	36	X	64058466	64058466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178032	exon2	c.G112A	p.A38T	.	.	.
IGBP1	3476	broad.mit.edu	36	X	69271220	69271220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001551	exon3	c.G311A	p.R104Q	.	.	.
ACRC	93953	broad.mit.edu	36	X	70740444	70740444	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052957	exon8	c.G592A	p.D198N	.	.	.
FLJ44635	392490	broad.mit.edu	36	X	71296495	71296495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207422	exon2	c.G91A	p.G31R	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83243738	83243738	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014496	exon18	c.T1739A	p.L580X	.	.	.
CSTF2	1478	broad.mit.edu	36	X	99963965	99963965	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001325	exon3	c.A207G	p.T69T	.	.	.
SSX6	280657	broad.mit.edu	36	X	47863898	47863898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SAT1	6303	broad.mit.edu	36	X	23712068	23712068	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3833-01A-01W-0900-09	TCGA-AA-3833-10A-01W-0900-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
