Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
PSD	5662	broad.mit.edu	36	10	104164948	104164949	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002779	exon4	c.786_787insC	p.P262fs	.	.	.
LOXL4	84171	broad.mit.edu	36	10	100007898	100007898	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032211	exon7	c.G935A	p.R312H	.	.	.
BTRC	8945	broad.mit.edu	36	10	103282163	103282163	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003939	exon7	c.G854A	p.R285Q	.	.	.
LDB1	8861	broad.mit.edu	36	10	103858019	103858019	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001113407	exon11	c.G1057A	p.E353K	.	.	.
C10orf79	80217	broad.mit.edu	36	10	105980450	105980450	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025145	exon2	c.C207T	p.G69G	.	.	.
ADD3	120	broad.mit.edu	36	10	111883220	111883220	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019903	exon14	c.G1879A	p.E627K	.	.	.
ACSL5	51703	broad.mit.edu	36	10	114172188	114172188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016234	exon17	c.C1760T	p.P587L	.	.	.
GFRA1	2674	broad.mit.edu	36	10	117843265	117843265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145453	exon7	c.G938A	p.S313N	.	.	.
WDR11	55717	broad.mit.edu	36	10	122609669	122609669	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon4	c.G411A	p.P137P	.	.	.
WDR11	55717	broad.mit.edu	36	10	122652701	122652701	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018117	exon23	c.C2898T	p.C966C	.	.	.
ADARB2	105	broad.mit.edu	36	10	1235981	1235981	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018702	exon8	c.C1789T	p.R597C	.	.	.
DMBT1	1755	broad.mit.edu	36	10	124321821	124321821	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007329	exon5	c.T189C	p.G63G	.	.	.
LHPP	64077	broad.mit.edu	36	10	126195803	126195803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022126	exon6	c.C689T	p.A230V	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183303	128183303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon3	c.C456T	p.R152R	.	.	.
C10orf90	118611	broad.mit.edu	36	10	128183365	128183365	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004298	exon3	c.G394T	p.G132C	.	.	.
MKI67	4288	broad.mit.edu	36	10	129803829	129803829	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002417	exon7	c.A833G	p.D278G	.	.	.
DCLRE1C	64421	broad.mit.edu	36	10	15016525	15016525	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033855	exon8	c.G538A	p.E180K	.	.	.
ITGA8	8516	broad.mit.edu	36	10	15737381	15737381	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003638	exon11	c.G979A	p.V327I	.	.	.
CUBN	8029	broad.mit.edu	36	10	17032058	17032058	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon34	c.A5028G	p.A1676A	.	.	.
MLLT10	8028	broad.mit.edu	36	10	22061987	22061987	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195626	exon17	c.C2372T	p.P791L	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24802242	24802242	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon6	c.C926T	p.A309V	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	25050827	25050827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020824	exon2	c.C8T	p.A3V	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26350582	26350582	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon8	c.A730T	p.R244W	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26502715	26502715	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon30	c.A3516C	p.E1172D	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26540813	26540813	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon35	c.A4766C	p.E1589A	.	.	.
YME1L1	10730	broad.mit.edu	36	10	27445169	27445169	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014263	exon16	c.G1831A	p.D611N	.	.	.
ZMYND11	10771	broad.mit.edu	36	10	277975	277975	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212479	exon10	c.G843A	p.E281E	.	.	.
BAMBI	25805	broad.mit.edu	36	10	29010372	29010372	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012342	exon2	c.C256T	p.R86X	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30356773	30356773	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.C2310T	p.S770S	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30357980	30357980	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.G1103T	p.G368V	.	.	.
MAP3K8	1326	broad.mit.edu	36	10	30779394	30779394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005204	exon5	c.C706T	p.H236Y	.	.	.
CREM	1390	broad.mit.edu	36	10	35477375	35477375	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181571	exon3	c.G118A	p.A40T	.	.	.
RET	5979	broad.mit.edu	36	10	42927561	42927561	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020975	exon8	c.G1531A	p.E511K	.	.	.
MARCH8	220972	broad.mit.edu	36	10	45274691	45274691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002266	exon6	c.C454T	p.R152C	.	.	.
RBP3	5949	broad.mit.edu	36	10	48002206	48002206	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002900	exon4	c.C3449T	p.T1150I	.	.	.
C10orf72	196740	broad.mit.edu	36	10	49985726	49985726	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144984	exon2	c.G376A	p.V126I	.	.	.
CHAT	1103	broad.mit.edu	36	10	50527597	50527597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142929	exon10	c.G1066A	p.V356I	.	.	.
CHAT	1103	broad.mit.edu	36	10	50533182	50533182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142929	exon12	c.C1316T	p.A439V	.	.	.
DKK1	22943	broad.mit.edu	36	10	53744321	53744321	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012242	exon1	c.G121A	p.A41T	.	.	.
CCDC6	8030	broad.mit.edu	36	10	61222839	61222839	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005436	exon9	c.T1267A	p.F423I	.	.	.
MYPN	84665	broad.mit.edu	36	10	69551215	69551215	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032578	exon2	c.G14T	p.S5I	.	.	.
HKDC1	80201	broad.mit.edu	36	10	70657025	70657025	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025130	exon2	c.G120T	p.M40I	.	.	.
SGPL1	8879	broad.mit.edu	36	10	72299622	72299622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003901	exon9	c.C772T	p.R258W	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72721369	72721369	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170744	exon10	c.C1469T	p.T490M	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72729025	72729025	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170744	exon17	c.C2823T	p.T941T	.	.	.
CAMK2G	818	broad.mit.edu	36	10	75244955	75244955	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172169	exon20	c.G1408A	p.V470M	.	.	.
PLAU	5328	broad.mit.edu	36	10	75346255	75346255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002658	exon11	c.G1222A	p.V408I	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7719290	7719290	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon5	c.G559A	p.V187M	.	.	.
MMRN2	79812	broad.mit.edu	36	10	88693572	88693572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024756	exon6	c.G949A	p.A317T	.	.	.
GLUD1	2746	broad.mit.edu	36	10	88808939	88808939	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005271	exon10	c.C1350T	p.S450S	.	.	.
ACTA2	59	broad.mit.edu	36	10	90693576	90693576	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141945	exon4	c.G327T	p.E109D	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91152409	91152409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001548	exon2	c.C397T	p.R133C	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91468533	91468533	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon12	c.T1358C	p.I453T	.	.	.
IDE	3416	broad.mit.edu	36	10	94204226	94204226	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004969	exon25	c.T3015C	p.F1005F	.	.	.
TBC1D12	23232	broad.mit.edu	36	10	96259839	96259839	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015188	exon8	c.T1602C	p.G534G	.	.	.
CYP2C9	1559	broad.mit.edu	36	10	96698905	96698905	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000771	exon5	c.C693A	p.N231K	.	.	.
ALDH18A1	5832	broad.mit.edu	36	10	97387105	97387105	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017423	exon4	c.C382T	p.R128C	.	.	.
BLNK	29760	broad.mit.edu	36	10	97959586	97959586	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013314	exon9	c.C744T	p.A248A	.	.	.
MMS19	64210	broad.mit.edu	36	10	99210675	99210675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022362	exon24	c.G2391T	p.Q797H	.	.	.
TAF5	6877	broad.mit.edu	36	10	105129358	105129358	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006951	exon4	c.1117delT	p.F373fs	.	.	.
ENKUR	219670	broad.mit.edu	36	10	25324669	25324669	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145010	exon3	c.359delA	p.K120fs	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30651384	30651384	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018109	exon6	c.1161delT	p.F387fs	.	.	.
NDST2	8509	broad.mit.edu	36	10	75237581	75237581	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003635	exon3	c.572delT	p.L191fs	.	.	.
ATAD1	84896	broad.mit.edu	36	10	89564193	89564193	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032810	exon2	c.144delA	p.K48fs	.	.	.
RUFY2	55680	broad.mit.edu	36	10	69806614	69806614	+	Splice_Site	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
OR8I2	120586	broad.mit.edu	36	11	55617883	55617884	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003750	exon1	c.524_525insT	p.H175fs	.	.	.
MUC6	4588	broad.mit.edu	36	11	1009473	1009473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005961	exon30	c.G3832A	p.V1278I	.	.	.
ANGPTL5	253935	broad.mit.edu	36	11	101267379	101267379	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178127	exon9	c.C1008G	p.N336K	.	.	.
BIRC2	329	broad.mit.edu	36	11	101726869	101726869	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166	exon3	c.C980T	p.A327V	.	.	.
MRVI1	10335	broad.mit.edu	36	11	10607750	10607750	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100163	exon5	c.C212T	p.A71V	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10777858	10777858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon19	c.G2141A	p.R714H	.	.	.
TTC12	54970	broad.mit.edu	36	11	112705890	112705890	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017868	exon7	c.G483T	p.V161V	.	.	.
ANKK1	255239	broad.mit.edu	36	11	112771319	112771319	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178510	exon4	c.A661G	p.T221A	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113956100	113956100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017678	exon5	c.C211T	p.R71C	.	.	.
FAM55D	54827	broad.mit.edu	36	11	113958809	113958809	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077639	exon3	c.C241A	p.Q81K	.	.	.
SIK3	23387	broad.mit.edu	36	11	116251328	116251328	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025164	exon10	c.T1115C	p.L372P	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116813094	116813094	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon26	c.C4854A	p.G1618G	.	.	.
PHLDB1	23187	broad.mit.edu	36	11	118003410	118003410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144758	exon6	c.C661T	p.P221S	.	.	.
DDX6	1656	broad.mit.edu	36	11	118162074	118162074	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004397	exon2	c.G97T	p.G33X	.	.	.
VPS11	55823	broad.mit.edu	36	11	118454219	118454219	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021729	exon11	c.C1887T	p.C629C	.	.	.
HINFP	25988	broad.mit.edu	36	11	118508873	118508873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015517	exon9	c.G965A	p.S322N	.	.	.
PVRL1	5818	broad.mit.edu	36	11	119040799	119040799	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002855	exon6	c.C1422T	p.A474A	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120251081	120251081	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon9	c.C1083T	p.G361G	.	.	.
TECTA	7007	broad.mit.edu	36	11	120521849	120521849	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon11	c.C3919A	p.Q1307K	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12191518	12191518	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014632	exon7	c.C832A	p.L278I	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12204431	12204431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014632	exon14	c.G1826A	p.S609N	.	.	.
OR10G9	219870	broad.mit.edu	36	11	123399077	123399077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001953	exon1	c.G148A	p.D50N	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123517609	123517609	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014622	exon15	c.C1974T	p.D658D	.	.	.
PRDM10	56980	broad.mit.edu	36	11	129292237	129292237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020228	exon16	c.G2332A	p.D778N	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133296377	133296377	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon18	c.C2453T	p.S818L	.	.	.
IGSF9B	22997	broad.mit.edu	36	11	133321338	133321338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014987	exon2	c.C90T	p.P30P	.	.	.
NCAPD3	23310	broad.mit.edu	36	11	133579181	133579181	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015261	exon10	c.C1185A	p.A395A	.	.	.
GLB1L2	89944	broad.mit.edu	36	11	133746889	133746889	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138342	exon15	c.C1462T	p.R488C	.	.	.
INSC	387755	broad.mit.edu	36	11	15168839	15168839	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042536	exon6	c.T596A	p.I199N	.	.	.
KRTAP5-3	387266	broad.mit.edu	36	11	1585829	1585829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012708	exon1	c.C363T	p.C121C	.	.	.
PLEKHA7	144100	broad.mit.edu	36	11	16804632	16804632	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175058	exon10	c.C954T	p.P318P	.	.	.
NAV2	89797	broad.mit.edu	36	11	19962293	19962293	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111018	exon11	c.C2500T	p.R834W	.	.	.
NELL1	4745	broad.mit.edu	36	11	20906599	20906599	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006157	exon9	c.G995A	p.R332Q	.	.	.
MUC15	143662	broad.mit.edu	36	11	26543678	26543678	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135092	exon3	c.C385A	p.P129T	.	.	.
KIF18A	81930	broad.mit.edu	36	11	28014576	28014576	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031217	exon14	c.A2160G	p.V720V	.	.	.
CARS	833	broad.mit.edu	36	11	2984742	2984742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014437	exon19	c.G2092A	p.D698N	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989203	29989203	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002233	exon2	c.C1599A	p.I533I	.	.	.
MRGPRE	116534	broad.mit.edu	36	11	3206403	3206403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039165	exon2	c.C200T	p.A67V	.	.	.
ELF5	2001	broad.mit.edu	36	11	34483823	34483823	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001422	exon2	c.G50A	p.C17Y	.	.	.
NUP98	4928	broad.mit.edu	36	11	3697254	3697254	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005387	exon18	c.A2414T	p.D805V	.	.	.
NUP98	4928	broad.mit.edu	36	11	3702968	3702968	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005387	exon15	c.T1839G	p.P613P	.	.	.
STIM1	6786	broad.mit.edu	36	11	4061304	4061304	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003156	exon10	c.T1474C	p.S492P	.	.	.
TRIM68	55128	broad.mit.edu	36	11	4578394	4578394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018073	exon7	c.G1146T	p.K382N	.	.	.
MAPK8IP1	9479	broad.mit.edu	36	11	45881041	45881041	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005456	exon5	c.C1147T	p.L383L	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45912270	45912270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101802	exon18	c.G1868A	p.R623H	.	.	.
CKAP5	9793	broad.mit.edu	36	11	46775031	46775031	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008938	exon12	c.C1374T	p.A458A	.	.	.
LRP4	4038	broad.mit.edu	36	11	46877625	46877625	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon5	c.C436T	p.R146C	.	.	.
ARFGAP2	84364	broad.mit.edu	36	11	47151606	47151606	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032389	exon7	c.C566T	p.P189L	.	.	.
NUP160	23279	broad.mit.edu	36	11	47793763	47793763	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015231	exon13	c.A1530G	p.V510V	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885655	4885655	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.C480A	p.P160P	.	.	.
OR52A1	23538	broad.mit.edu	36	11	5129696	5129696	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012375	exon1	c.A480G	p.P160P	.	.	.
OR51V1	283111	broad.mit.edu	36	11	5178330	5178330	+	Nonsense_Mutation	SNP	C	T	T	rs61738413	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004760	exon1	c.G177A	p.W59X	.	.	.
HBG1	3047	broad.mit.edu	36	11	5227213	5227213	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000559	exon2	c.G276A	p.L92L	.	.	.
HBG2	3048	broad.mit.edu	36	11	5232137	5232137	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000184	exon2	c.G276A	p.L92L	.	.	.
UBQLNL	143630	broad.mit.edu	36	11	5493321	5493321	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145053	exon1	c.A927G	p.S309S	.	.	.
OR5D14	219436	broad.mit.edu	36	11	55320197	55320197	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004735	exon1	c.C590A	p.P197H	.	.	.
OR5W2	390148	broad.mit.edu	36	11	55437967	55437967	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001960	exon1	c.T668C	p.L223P	.	.	.
OR5AK2	390181	broad.mit.edu	36	11	56513020	56513020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005323	exon1	c.C56T	p.A19V	.	.	.
OR6Q1	219952	broad.mit.edu	36	11	57555575	57555575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005186	exon1	c.C575T	p.S192L	.	.	.
OR1S2	219958	broad.mit.edu	36	11	57728179	57728179	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004459	exon1	c.A51C	p.E17D	.	.	.
STX3	6809	broad.mit.edu	36	11	59312932	59312932	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178040	exon4	c.T225C	p.D75D	.	.	.
ZP1	22917	broad.mit.edu	36	11	60397798	60397798	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207341	exon9	c.G1546T	p.G516C	.	.	.
TMEM109	79073	broad.mit.edu	36	11	60446034	60446034	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024092	exon4	c.C553T	p.R185W	.	.	.
DAGLA	747	broad.mit.edu	36	11	61261283	61261283	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006133	exon14	c.G1425A	p.A475A	.	.	.
C11orf9	745	broad.mit.edu	36	11	61303898	61303898	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013279	exon17	c.C2229T	p.S743S	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62042645	62042645	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G15820A	p.E5274K	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62049432	62049432	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G9033T	p.V3011V	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62055673	62055673	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.G2792A	p.G931D	.	.	.
TAF6L	10629	broad.mit.edu	36	11	62310597	62310597	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006473	exon11	c.C1122A	p.A374A	.	.	.
FLRT1	23769	broad.mit.edu	36	11	63641526	63641526	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013280	exon2	c.C1211T	p.T404M	.	.	.
SMPD1	6609	broad.mit.edu	36	11	6372321	6372321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007593	exon6	c.C1801T	p.R601C	.	.	.
RASGRP2	10235	broad.mit.edu	36	11	64266145	64266145	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098670	exon3	c.T89C	p.V30A	.	.	.
PYGM	5837	broad.mit.edu	36	11	64281873	64281873	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164716	exon3	c.G350A	p.G117D	.	.	.
SF1	7536	broad.mit.edu	36	11	64300569	64300569	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201998	exon2	c.G137A	p.R46Q	.	.	.
NAALADL1	10004	broad.mit.edu	36	11	64569461	64569461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005468	exon18	c.C2081T	p.P694L	.	.	.
SLC25A45	283130	broad.mit.edu	36	11	64900543	64900543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077241	exon6	c.C652T	p.R218W	.	.	.
KAT5	10524	broad.mit.edu	36	11	65238762	65238762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182710	exon7	c.G911A	p.R304H	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6548751	6548751	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144666	exon42	c.G13433A	p.R4478Q	.	.	.
SLC29A2	3177	broad.mit.edu	36	11	65890265	65890265	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001532	exon9	c.C881T	p.A294V	.	.	.
DCHS1	8642	broad.mit.edu	36	11	6604992	6604992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003737	exon14	c.G5854A	p.D1952N	.	.	.
CTSF	8722	broad.mit.edu	36	11	66089758	66089758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003793	exon8	c.C1005T	p.G335G	.	.	.
GPR152	390212	broad.mit.edu	36	11	66975741	66975741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206997	exon1	c.C1031T	p.P344L	.	.	.
LRP5	4041	broad.mit.edu	36	11	67910548	67910548	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002335	exon6	c.C1204A	p.L402M	.	.	.
PPP6R3	55291	broad.mit.edu	36	11	68088385	68088385	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164164	exon10	c.G884T	p.S295I	.	.	.
SHANK2	22941	broad.mit.edu	36	11	70010311	70010311	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133266	exon10	c.A1971C	p.K657N	.	.	.
INPPL1	3636	broad.mit.edu	36	11	71619821	71619821	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001567	exon12	c.C1437T	p.R479R	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75904888	75904888	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020193	exon11	c.C1568T	p.A523V	.	.	.
PAK1	5058	broad.mit.edu	36	11	76724930	76724930	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002576	exon13	c.G1262T	p.R421L	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78076771	78076771	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon29	c.G5236T	p.G1746C	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78175591	78175591	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon16	c.G2365A	p.A789T	.	.	.
STK33	65975	broad.mit.edu	36	11	8452888	8452888	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030906	exon3	c.C141A	p.S47R	.	.	.
TMEM126B	55863	broad.mit.edu	36	11	85024397	85024397	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193537	exon5	c.C376T	p.L126L	.	.	.
EED	8726	broad.mit.edu	36	11	85665822	85665822	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152991	exon10	c.G1119A	p.W373X	.	.	.
ST5	6764	broad.mit.edu	36	11	8675754	8675754	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005418	exon20	c.C2946T	p.D982D	.	.	.
CWC15	51503	broad.mit.edu	36	11	94344268	94344268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016403	exon3	c.C163T	p.R55C	.	.	.
ARHGAP42	143872	broad.mit.edu	36	11	100341674	100341674	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152432	exon17	c.1507delA	p.K503fs	.	.	.
DLAT	1737	broad.mit.edu	36	11	111402187	111402187	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001931	exon2	c.335delA	p.E112fs	.	.	.
DSCAML1	57453	broad.mit.edu	36	11	116804398	116804398	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020693	exon33	c.6198delC	p.P2066fs	.	.	.
LSP1	4046	broad.mit.edu	36	11	1859362	1859362	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013253	exon3	c.130delC	p.P44fs	.	.	.
FOLR3	2352	broad.mit.edu	36	11	71528299	71528299	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000804	exon5	c.512delG	p.R171fs	.	.	.
ODZ4	26011	broad.mit.edu	36	11	78203000	78203000	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098816	exon13	c.1770delC	p.P590fs	.	.	.
FAT3	120114	broad.mit.edu	36	11	92255949	92255949	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon23	c.12679delC	p.P4227fs	.	.	.
PANX1	24145	broad.mit.edu	36	11	93502262	93502262	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015368	exon1	c.136delC	p.P46fs	.	.	.
C11orf10	746	broad.mit.edu	36	11	61314651	61314651	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
C12orf48	55010	broad.mit.edu	36	12	101100501	101100501	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017915	exon9	c.G1229A	p.R410H	.	.	.
ASCL1	429	broad.mit.edu	36	12	101876541	101876541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004316	exon1	c.G389A	p.R130H	.	.	.
STAB2	55576	broad.mit.edu	36	12	102538384	102538384	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon4	c.G340T	p.G114C	.	.	.
HSP90B1	7184	broad.mit.edu	36	12	102850829	102850829	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003299	exon4	c.G390A	p.E130E	.	.	.
NUAK1	9891	broad.mit.edu	36	12	104985232	104985232	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014840	exon7	c.G1464A	p.S488S	.	.	.
SSH1	54434	broad.mit.edu	36	12	107725593	107725593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161331	exon7	c.G709A	p.A237T	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108315633	108315633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101421	exon2	c.G241A	p.V81I	.	.	.
TCHP	84260	broad.mit.edu	36	12	108825306	108825306	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143852	exon2	c.G92A	p.R31Q	.	.	.
TAS2R50	259296	broad.mit.edu	36	12	11029961	11029961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176890	exon1	c.C766T	p.R256W	.	.	.
SH2B3	10019	broad.mit.edu	36	12	110369999	110369999	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005475	exon7	c.G1393A	p.V465I	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110474597	110474597	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002973	exon5	c.C921T	p.A307A	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111106597	111106597	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon60	c.C10040G	p.P3347R	.	.	.
RBM19	9904	broad.mit.edu	36	12	112868654	112868654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016196	exon12	c.C1417T	p.L473F	.	.	.
CIT	11113	broad.mit.edu	36	12	118652761	118652761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon26	c.G3282A	p.K1094K	.	.	.
CCDC64	92558	broad.mit.edu	36	12	119012236	119012236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon8	c.C1538T	p.S513L	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119050054	119050054	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon58	c.C7998T	p.D2666D	.	.	.
ZCCHC8	55596	broad.mit.edu	36	12	121551162	121551162	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017612	exon1	c.T179C	p.I60T	.	.	.
HIP1R	9026	broad.mit.edu	36	12	121905618	121905618	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003959	exon10	c.G842A	p.R281Q	.	.	.
ABCB9	23457	broad.mit.edu	36	12	121980544	121980544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019624	exon11	c.C2039T	p.T680I	.	.	.
LRP6	4040	broad.mit.edu	36	12	12208613	12208613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon9	c.G1913A	p.R638Q	.	.	.
ATP6V0A2	23545	broad.mit.edu	36	12	122786074	122786074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012463	exon8	c.C775T	p.R259W	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128750425	128750425	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon2	c.T851G	p.L284R	.	.	.
RIMBP2	23504	broad.mit.edu	36	12	129492428	129492428	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015347	exon8	c.A1371C	p.K457N	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130807045	130807045	+	Silent	SNP	G	A	A	rs34225497	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004592	exon11	c.G1623A	p.A541A	.	.	.
GALNT9	50614	broad.mit.edu	36	12	131249724	131249724	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122636	exon9	c.C1445T	p.A482V	.	.	.
GOLGA3	2802	broad.mit.edu	36	12	131894882	131894882	+	Silent	SNP	G	A	A	rs7299219	byHapMap	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172557	exon5	c.C846T	p.S282S	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14504949	14504949	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon9	c.T2412C	p.T804T	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14542262	14542262	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon15	c.C3801A	p.T1267T	.	.	.
GYS2	2998	broad.mit.edu	36	12	21604606	21604606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021957	exon8	c.G1150A	p.A384T	.	.	.
KIAA0528	9847	broad.mit.edu	36	12	22568824	22568824	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014802	exon6	c.G450A	p.T150T	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2484370	2484370	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon8	c.C1215T	p.S405S	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2492256	2492256	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon9	c.G1235T	p.R412M	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2631161	2631161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon32	c.G4040A	p.R1347Q	.	.	.
FAR2	55711	broad.mit.edu	36	12	29314696	29314696	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018099	exon2	c.C47T	p.T16M	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31491780	31491780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144973	exon6	c.G1820A	p.R607Q	.	.	.
KIF21A	55605	broad.mit.edu	36	12	38010321	38010321	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173465	exon22	c.C3222T	p.S1074S	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39045066	39045066	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon49	c.G7337A	p.R2446H	.	.	.
PPHLN1	51535	broad.mit.edu	36	12	41078925	41078925	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201438	exon9	c.G627A	p.A209A	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42112497	42112497	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025003	exon21	c.T2973G	p.S991S	.	.	.
ADAMTS20	80070	broad.mit.edu	36	12	42231295	42231295	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025003	exon2	c.A137C	p.E46A	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45758911	45758911	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181847	exon2	c.G142A	p.A48T	.	.	.
PRKAG1	5571	broad.mit.edu	36	12	47685049	47685049	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002733	exon7	c.C375A	p.S125S	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891024	4891024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000217	exon2	c.C219T	p.F73F	.	.	.
KCNA1	3736	broad.mit.edu	36	12	4891267	4891267	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000217	exon2	c.G462A	p.W154X	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50364340	50364340	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014191	exon3	c.A392G	p.H131R	.	.	.
FIGNL2	401720	broad.mit.edu	36	12	50502318	50502318	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013690	exon1	c.C147T	p.D49D	.	.	.
SP7	121340	broad.mit.edu	36	12	52009362	52009362	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152860	exon2	c.C131T	p.T44I	.	.	.
HOXC12	3228	broad.mit.edu	36	12	52635035	52635035	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173860	exon1	c.C55T	p.H19Y	.	.	.
OR9K2	441639	broad.mit.edu	36	12	53809988	53809988	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005243	exon1	c.T169G	p.L57V	.	.	.
OR10P1	121130	broad.mit.edu	36	12	54317713	54317713	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206899	exon1	c.C771T	p.S257S	.	.	.
ITGA7	3679	broad.mit.edu	36	12	54387637	54387637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144996	exon1	c.G97A	p.A33T	.	.	.
STAT2	6773	broad.mit.edu	36	12	55036236	55036236	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198332	exon3	c.C232A	p.P78T	.	.	.
TIMELESS	8914	broad.mit.edu	36	12	55111559	55111559	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003920	exon8	c.G784A	p.A262T	.	.	.
AGAP2	116986	broad.mit.edu	36	12	56407589	56407589	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014770	exon16	c.C1833A	p.I611I	.	.	.
AVIL	10677	broad.mit.edu	36	12	56486440	56486440	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006576	exon13	c.T1641C	p.T547T	.	.	.
SRGAP1	57522	broad.mit.edu	36	12	62808140	62808140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020762	exon21	c.G2773A	p.D925N	.	.	.
HELB	92797	broad.mit.edu	36	12	65018106	65018106	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033647	exon13	c.T3221C	p.I1074T	.	.	.
LAG3	3902	broad.mit.edu	36	12	6752679	6752679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002286	exon2	c.C119T	p.A40V	.	.	.
USP5	8078	broad.mit.edu	36	12	6840447	6840447	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003481	exon12	c.C1414A	p.L472M	.	.	.
ENO2	2026	broad.mit.edu	36	12	6895932	6895932	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001975	exon3	c.G176A	p.G59D	.	.	.
CD163	9332	broad.mit.edu	36	12	7527515	7527515	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon12	c.C2803T	p.P935S	.	.	.
OSBPL8	114882	broad.mit.edu	36	12	75315755	75315755	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020841	exon8	c.G522A	p.G174G	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83784970	83784970	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182767	exon10	c.T1629C	p.A543A	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83794470	83794470	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182767	exon6	c.C804T	p.F268F	.	.	.
LRRIQ1	84125	broad.mit.edu	36	12	84042082	84042082	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032165	exon17	c.A3661T	p.T1221S	.	.	.
ATP2B1	490	broad.mit.edu	36	12	88539508	88539508	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001323	exon9	c.C1536A	p.S512S	.	.	.
KERA	11081	broad.mit.edu	36	12	89974101	89974101	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007035	exon2	c.A89G	p.H30R	.	.	.
EEA1	8411	broad.mit.edu	36	12	91694816	91694816	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003566	exon28	c.G4048A	p.A1350T	.	.	.
TMCC3	57458	broad.mit.edu	36	12	93500195	93500195	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020698	exon2	c.G329A	p.R110H	.	.	.
FGD6	55785	broad.mit.edu	36	12	94128906	94128906	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018351	exon2	c.T285C	p.C95C	.	.	.
NR1H4	9971	broad.mit.edu	36	12	99428748	99428748	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005123	exon4	c.G141A	p.S47S	.	.	.
MYO1H	283446	broad.mit.edu	36	12	108343178	108343178	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101421	exon15	c.1559delA	p.E520fs	.	.	.
GIT2	9815	broad.mit.edu	36	12	108913912	108913912	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135214	exon2	c.89delT	p.L30fs	.	.	.
PLEKHA5	54477	broad.mit.edu	36	12	19405785	19405785	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019012	exon23	c.2988delA	p.L996fs	.	.	.
GXYLT1	283464	broad.mit.edu	36	12	40767953	40767953	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173601	exon8	c.1225delA	p.T409fs	.	.	.
OR6C65	403282	broad.mit.edu	36	12	54080877	54080877	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005518	exon1	c.298delT	p.F100fs	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102326098	102326098	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000123	exon15	c.A3405G	p.E1135E	.	.	.
MCF2L	23263	broad.mit.edu	36	13	112772385	112772385	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024979	exon9	c.A905G	p.Q302R	.	.	.
ATP4B	496	broad.mit.edu	36	13	113355231	113355231	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000705	exon4	c.C513T	p.G171G	.	.	.
TPTE2	93492	broad.mit.edu	36	13	18922243	18922243	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001141968	exon12	c.G613A	p.V205I	.	.	.
ZDHHC20	253832	broad.mit.edu	36	13	20885888	20885888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153251	exon4	c.G273T	p.K91N	.	.	.
SACS	26278	broad.mit.edu	36	13	22803530	22803530	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon10	c.C12485T	p.A4162V	.	.	.
SACS	26278	broad.mit.edu	36	13	22827928	22827928	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014363	exon8	c.C823A	p.L275I	.	.	.
SPATA13	221178	broad.mit.edu	36	13	23766997	23766997	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166271	exon10	c.G3201T	p.V1067V	.	.	.
ATP12A	479	broad.mit.edu	36	13	24181890	24181890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185085	exon19	c.G2705A	p.R902H	.	.	.
RNF17	56163	broad.mit.edu	36	13	24337048	24337048	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon29	c.A4001G	p.H1334R	.	.	.
FRY	10129	broad.mit.edu	36	13	31703408	31703408	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon41	c.T5498A	p.V1833D	.	.	.
FRY	10129	broad.mit.edu	36	13	31709688	31709688	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023037	exon44	c.T5983A	p.S1995T	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35584022	35584022	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004734	exon3	c.C707T	p.T236M	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35584179	35584179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004734	exon3	c.C550T	p.R184W	.	.	.
SPG20	23111	broad.mit.edu	36	13	35803624	35803624	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142295	exon3	c.T920C	p.V307A	.	.	.
CCNA1	8900	broad.mit.edu	36	13	35904802	35904802	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003914	exon1	c.T44C	p.I15T	.	.	.
FREM2	341640	broad.mit.edu	36	13	38348493	38348493	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207361	exon20	c.T8518C	p.F2840L	.	.	.
DGKH	160851	broad.mit.edu	36	13	41681190	41681190	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178009	exon22	c.G2697A	p.Q899Q	.	.	.
ZC3H13	23091	broad.mit.edu	36	13	45447943	45447943	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015070	exon12	c.G1944T	p.Q648H	.	.	.
LCP1	3936	broad.mit.edu	36	13	45599727	45599727	+	Nonstop_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002298	exon16	c.A1884C	p.X628C	.	.	.
ATP7B	540	broad.mit.edu	36	13	51414579	51414579	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000053	exon15	c.C3356A	p.P1119H	.	.	.
PCDH17	27253	broad.mit.edu	36	13	57106643	57106643	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040429	exon1	c.C1962T	p.D654D	.	.	.
PCDH20	64881	broad.mit.edu	36	13	60885431	60885431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022843	exon2	c.C802T	p.R268C	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76640583	76640583	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon40	c.C6095T	p.A2032V	.	.	.
EDNRB	1910	broad.mit.edu	36	13	77390480	77390480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122659	exon1	c.C230T	p.T77M	.	.	.
DZIP1	22873	broad.mit.edu	36	13	95035161	95035161	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014934	exon21	c.C2297T	p.A766V	.	.	.
FARP1	10160	broad.mit.edu	36	13	97859771	97859771	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005766	exon14	c.C1593T	p.G531G	.	.	.
ARHGEF7	8874	broad.mit.edu	36	13	110565935	110565935	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001113512	exon1	c.61delA	p.K21fs	.	.	.
HSPH1	10808	broad.mit.edu	36	13	30630974	30630974	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006644	exon2	c.134delA	p.N45fs	.	.	.
SLITRK1	114798	broad.mit.edu	36	13	83353510	83353510	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052910	exon1	c.134delA	p.K45fs	.	.	.
AHNAK2	113146	broad.mit.edu	36	14	104477387	104477388	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138420	exon7	c.15446_15447insG	p.E5149fs	.	.	.
PPP2R5C	5527	broad.mit.edu	36	14	101454035	101454035	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002719	exon13	c.C1441T	p.Q481X	.	.	.
TRAF3	7187	broad.mit.edu	36	14	102406365	102406365	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145725	exon3	c.G74T	p.R25L	.	.	.
OR4K5	79317	broad.mit.edu	36	14	19458990	19458990	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005483	exon1	c.C385T	p.P129S	.	.	.
TEP1	7011	broad.mit.edu	36	14	19910749	19910749	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007110	exon49	c.G7059A	p.S2353S	.	.	.
TEP1	7011	broad.mit.edu	36	14	19946111	19946111	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007110	exon2	c.C328T	p.R110W	.	.	.
RNASE7	84659	broad.mit.edu	36	14	20581382	20581382	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032572	exon2	c.G391A	p.V131I	.	.	.
CHD8	57680	broad.mit.edu	36	14	20930778	20930778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020920	exon34	c.G5662A	p.V1888I	.	.	.
SALL2	6297	broad.mit.edu	36	14	21062575	21062575	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005407	exon2	c.G1127A	p.R376H	.	.	.
OXA1L	5018	broad.mit.edu	36	14	22310593	22310593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005015	exon10	c.G1474A	p.D492N	.	.	.
REM2	161253	broad.mit.edu	36	14	22425114	22425114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173527	exon4	c.C561T	p.T187T	.	.	.
JPH4	84502	broad.mit.edu	36	14	23110960	23110960	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032452	exon5	c.C1161T	p.D387D	.	.	.
LRRC16B	90668	broad.mit.edu	36	14	23598190	23598190	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138360	exon20	c.G1578A	p.L526L	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23863140	23863140	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198592	exon17	c.C2014A	p.L672I	.	.	.
ADCY4	196883	broad.mit.edu	36	14	23870320	23870320	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198592	exon6	c.A752G	p.Q251R	.	.	.
NYNRIN	57523	broad.mit.edu	36	14	23947198	23947198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025081	exon3	c.G482A	p.R161Q	.	.	.
HECTD1	25831	broad.mit.edu	36	14	30675598	30675598	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015382	exon20	c.C3004T	p.R1002W	.	.	.
FBXO33	254170	broad.mit.edu	36	14	38940381	38940381	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203301	exon3	c.A1146G	p.E382E	.	.	.
LRFN5	145581	broad.mit.edu	36	14	41430568	41430568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152447	exon4	c.C1751T	p.T584M	.	.	.
MDGA2	161357	broad.mit.edu	36	14	46496477	46496477	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182830	exon9	c.T1045A	p.L349M	.	.	.
TRIM9	114088	broad.mit.edu	36	14	50537308	50537308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052978	exon6	c.C1307T	p.A436V	.	.	.
NID2	22795	broad.mit.edu	36	14	51543086	51543086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007361	exon20	c.G3923A	p.R1308Q	.	.	.
KTN1	3895	broad.mit.edu	36	14	55200512	55200512	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079521	exon33	c.G3177A	p.K1059K	.	.	.
PSMA3	5684	broad.mit.edu	36	14	57808346	57808346	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002788	exon11	c.T748C	p.S250P	.	.	.
PPM1A	5494	broad.mit.edu	36	14	59826328	59826328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021003	exon4	c.G1004A	p.R335H	.	.	.
PLEKHH1	57475	broad.mit.edu	36	14	67098452	67098452	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020715	exon6	c.G452A	p.S151N	.	.	.
ZFYVE26	23503	broad.mit.edu	36	14	67297865	67297865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015346	exon35	c.C6559T	p.R2187W	.	.	.
TSHR	7253	broad.mit.edu	36	14	80680394	80680394	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000369	exon10	c.C2239A	p.L747I	.	.	.
FLRT2	23768	broad.mit.edu	36	14	85157749	85157749	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013231	exon2	c.T138C	p.F46F	.	.	.
C14orf49	161176	broad.mit.edu	36	14	95002285	95002285	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152592	exon3	c.C363T	p.A121A	.	.	.
CDC42BPB	9578	broad.mit.edu	36	14	102516990	102516990	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006035	exon8	c.1013delA	p.K338fs	.	.	.
DHRS2	10202	broad.mit.edu	36	14	23178330	23178330	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005794	exon3	c.243delG	p.Q81fs	.	.	.
ARHGAP5	394	broad.mit.edu	36	14	31632447	31632447	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001030055	exon2	c.2821delA	p.K941fs	.	.	.
POTEB	339010	broad.mit.edu	36	15	19305337	19305337	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207355	exon11	c.G1681T	p.V561L	.	.	.
ATP10A	57194	broad.mit.edu	36	15	23514561	23514561	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024490	exon8	c.G1442A	p.R481H	.	.	.
OCA2	4948	broad.mit.edu	36	15	25844887	25844887	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000275	exon19	c.C2060T	p.A687V	.	.	.
HERC2	8924	broad.mit.edu	36	15	26121124	26121124	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon46	c.C7444A	p.L2482I	.	.	.
NDNL2	56160	broad.mit.edu	36	15	27348517	27348517	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138704	exon1	c.C685T	p.R229X	.	.	.
FMN1	342184	broad.mit.edu	36	15	30979606	30979606	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103184	exon10	c.G2851A	p.V951M	.	.	.
THBS1	7057	broad.mit.edu	36	15	37668025	37668025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon10	c.G1478A	p.G493E	.	.	.
DISP2	85455	broad.mit.edu	36	15	38448582	38448582	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033510	exon8	c.G2977A	p.V993M	.	.	.
RHOV	171177	broad.mit.edu	36	15	38953441	38953441	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133639	exon1	c.T189C	p.T63T	.	.	.
MAPKBP1	23005	broad.mit.edu	36	15	39854836	39854836	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014994	exon2	c.G71A	p.R24H	.	.	.
ZFP106	64397	broad.mit.edu	36	15	40529558	40529558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022473	exon2	c.C2135T	p.S712L	.	.	.
SPG11	80208	broad.mit.edu	36	15	42674944	42674944	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon26	c.C4440A	p.A1480A	.	.	.
SPG11	80208	broad.mit.edu	36	15	42678308	42678308	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025137	exon22	c.T3705C	p.N1235N	.	.	.
DUOX1	53905	broad.mit.edu	36	15	43241390	43241390	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017434	exon31	c.G4019T	p.G1340V	.	.	.
CEP152	22995	broad.mit.edu	36	15	46877517	46877517	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001194998	exon3	c.T111C	p.L37L	.	.	.
FGF7	2252	broad.mit.edu	36	15	47503895	47503895	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002009	exon2	c.C109G	p.P37A	.	.	.
TRPM7	54822	broad.mit.edu	36	15	48690749	48690749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017672	exon17	c.G2113T	p.A705S	.	.	.
BCL2L10	10017	broad.mit.edu	36	15	50192021	50192021	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020396	exon1	c.C195T	p.S65S	.	.	.
RSL24D1	51187	broad.mit.edu	36	15	53272274	53272274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016304	exon2	c.G131A	p.R44H	.	.	.
NEDD4	4734	broad.mit.edu	36	15	53909481	53909481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006154	exon29	c.G2609A	p.R870H	.	.	.
HERC1	8925	broad.mit.edu	36	15	61724777	61724777	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003922	exon56	c.G11036A	p.R3679H	.	.	.
ZNF609	23060	broad.mit.edu	36	15	62757459	62757459	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015042	exon5	c.G3494A	p.R1165H	.	.	.
CILP	8483	broad.mit.edu	36	15	63286191	63286191	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003613	exon4	c.C406T	p.R136C	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63749559	63749559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon26	c.C4483T	p.R1495W	.	.	.
PIAS1	8554	broad.mit.edu	36	15	66165752	66165752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016166	exon2	c.G79A	p.G27R	.	.	.
STOML1	9399	broad.mit.edu	36	15	72064754	72064754	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004809	exon5	c.A748C	p.S250R	.	.	.
ISLR	3671	broad.mit.edu	36	15	72254515	72254515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201526	exon2	c.C263T	p.T88M	.	.	.
LMAN1L	79748	broad.mit.edu	36	15	72892323	72892323	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021819	exon1	c.G75A	p.T25T	.	.	.
CTSH	1512	broad.mit.edu	36	15	77004814	77004814	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004390	exon10	c.G723T	p.E241D	.	.	.
FSD2	123722	broad.mit.edu	36	15	81252832	81252832	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007122	exon2	c.T365A	p.L122H	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82430312	82430312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon20	c.C2563T	p.R855C	 ADAMTSL3,large_intestine,colon,Substitution - Missense,0 	.	.
ZSCAN2	54993	broad.mit.edu	36	15	82965151	82965151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181877	exon3	c.G721A	p.E241K	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84615897	84615897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152336	exon14	c.C1893T	p.G631G	.	.	.
AGBL1	123624	broad.mit.edu	36	15	84867100	84867100	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152336	exon18	c.G2473A	p.A825T	.	.	.
ISG20	3669	broad.mit.edu	36	15	86999659	86999659	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002201	exon4	c.C439T	p.L147F	.	.	.
ANPEP	290	broad.mit.edu	36	15	88148142	88148142	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001150	exon7	c.G1275A	p.A425A	.	.	.
TTLL13	440307	broad.mit.edu	36	15	88602281	88602281	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029964	exon9	c.T943C	p.S315P	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88828457	88828457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003870	exon30	c.C3790T	p.R1264W	.	.	.
NR2F2	7026	broad.mit.edu	36	15	94678682	94678682	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145155	exon2	c.C417A	p.A139A	.	.	.
IGF1R	3480	broad.mit.edu	36	15	97068420	97068420	+	Silent	SNP	C	T	T	rs45468203	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000875	exon2	c.C201T	p.A67A	.	.	.
ALDH1A3	220	broad.mit.edu	36	15	99251705	99251705	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000693	exon6	c.G561T	p.L187L	.	.	.
PCSK6	5046	broad.mit.edu	36	15	99747245	99747245	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138322	exon9	c.C1255A	p.L419I	.	.	.
SPATA5L1	79029	broad.mit.edu	36	15	43490014	43490014	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024063	exon3	c.1428delA	p.L476fs	.	.	.
UNC13C	440279	broad.mit.edu	36	15	52612552	52612552	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080534	exon24	c.5692delA	p.K1898fs	.	.	.
NDRG4	65009	broad.mit.edu	36	16	57079232	57079233	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022910	exon2	c.49_50insG	p.R17fs	.	.	.
SLC7A5P2	387254	broad.mit.edu	36	16	21438550	21438551	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
CIITA	4261	broad.mit.edu	36	16	10908651	10908651	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000246	exon11	c.C1801A	p.R601R	.	.	.
TXNDC11	51061	broad.mit.edu	36	16	11693138	11693138	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015914	exon8	c.C1409T	p.A470V	.	.	.
MYH11	4629	broad.mit.edu	36	16	15721628	15721628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon35	c.C4855T	p.R1619C	.	.	.
ABCC1	4363	broad.mit.edu	36	16	16142565	16142565	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019862	exon30	c.T4345C	p.Y1449H	.	.	.
SMG1	23049	broad.mit.edu	36	16	18735225	18735225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015092	exon58	c.G10202A	p.C3401Y	.	.	.
ACSM1	116285	broad.mit.edu	36	16	20542375	20542375	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052956	exon13	c.G1668A	p.L556L	.	.	.
TSC2	7249	broad.mit.edu	36	16	2055610	2055610	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114382	exon16	c.C1689T	p.A563A	.	.	.
DNAH3	55567	broad.mit.edu	36	16	20852170	20852170	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon62	c.C12158A	p.P4053H	.	.	.
ABCA3	21	broad.mit.edu	36	16	2288434	2288434	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001089	exon15	c.T1850G	p.L617R	.	.	.
ABCA3	21	broad.mit.edu	36	16	2314531	2314531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001089	exon6	c.C322T	p.R108C	.	.	.
PALB2	79728	broad.mit.edu	36	16	23541932	23541932	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024675	exon9	c.A2855G	p.D952G	.	.	.
PRKCB	5579	broad.mit.edu	36	16	24133562	24133562	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002738	exon17	c.G1946C	p.R649T	.	.	.
SLC5A11	115584	broad.mit.edu	36	16	24825918	24825918	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052944	exon12	c.G1186A	p.A396T	.	.	.
TBC1D24	57465	broad.mit.edu	36	16	2488324	2488324	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199107	exon4	c.G1068A	p.W356X	.	.	.
PRSS21	10942	broad.mit.edu	36	16	2808944	2808944	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006799	exon4	c.G523T	p.G175C	.	.	.
APOB48R	55911	broad.mit.edu	36	16	28416907	28416907	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018690	exon4	c.C2933T	p.P978L	.	.	.
CD19	930	broad.mit.edu	36	16	28855389	28855389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178098	exon7	c.G1051A	p.V351M	.	.	.
MVP	9961	broad.mit.edu	36	16	29766053	29766053	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017458	exon14	c.A2300C	p.E767A	.	.	.
FAM57B	83723	broad.mit.edu	36	16	29945508	29945508	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031478	exon3	c.C367T	p.R123C	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30657748	30657748	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon34	c.C8886T	p.S2962S	.	.	.
SRCAP	10847	broad.mit.edu	36	16	30658329	30658329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006662	exon34	c.G9467A	p.R3156H	.	.	.
FUS	2521	broad.mit.edu	36	16	31109891	31109891	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170634	exon14	c.T1497C	p.G499G	.	.	.
PYDC1	260434	broad.mit.edu	36	16	31135739	31135739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152901	exon1	c.C112T	p.R38C	.	.	.
PYDC1	260434	broad.mit.edu	36	16	31135843	31135843	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152901	exon1	c.C8T	p.T3M	.	.	.
ITGAX	3687	broad.mit.edu	36	16	31280662	31280662	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000887	exon10	c.G1017A	p.T339T	.	.	.
ARMC5	79798	broad.mit.edu	36	16	31383538	31383538	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001105247	exon4	c.C1693T	p.R565C	.	.	.
C16orf58	64755	broad.mit.edu	36	16	31412739	31412739	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022744	exon7	c.C722T	p.A241V	.	.	.
SLX4	84464	broad.mit.edu	36	16	3579049	3579049	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032444	exon12	c.C4591T	p.P1531S	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3730471	3730471	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon24	c.G4063A	p.G1355R	.	.	.
CORO7	79585	broad.mit.edu	36	16	4397557	4397557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024535	exon5	c.G433A	p.A145T	.	.	.
ORC6	23594	broad.mit.edu	36	16	45282470	45282470	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014321	exon2	c.G132T	p.E44D	.	.	.
ADCY7	113	broad.mit.edu	36	16	48892149	48892149	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114	exon8	c.G1099A	p.V367M	.	.	.
NOD2	64127	broad.mit.edu	36	16	49303114	49303114	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022162	exon4	c.G1791A	p.A597A	.	.	.
FTO	79068	broad.mit.edu	36	16	52480345	52480345	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080432	exon7	c.G1220T	p.W407L	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54291645	54291645	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172504	exon12	c.G1684A	p.A562T	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55617641	55617641	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon6	c.G1285A	p.V429M	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55659199	55659199	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon36	c.T4457C	p.L1486P	.	.	.
CPNE2	221184	broad.mit.edu	36	16	55704838	55704838	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152727	exon3	c.C318T	p.D106D	.	.	.
GPR97	222487	broad.mit.edu	36	16	56270698	56270698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170776	exon5	c.G601A	p.V201I	.	.	.
CDH8	1006	broad.mit.edu	36	16	60246915	60246915	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001796	exon11	c.C1866T	p.G622G	.	.	.
EXOC3L	283849	broad.mit.edu	36	16	65776188	65776188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178516	exon13	c.G1932A	p.A644A	.	.	.
LRRC29	26231	broad.mit.edu	36	16	65801506	65801506	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004055	exon3	c.C87T	p.H29H	.	.	.
CLEC18C	283971	broad.mit.edu	36	16	68777301	68777301	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173619	exon11	c.C1224T	p.C408C	.	.	.
AARS	16	broad.mit.edu	36	16	68846040	68846040	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001605	exon17	c.C2385T	p.I795I	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69471080	69471080	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon61	c.G10293T	p.T3431T	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69744063	69744063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon7	c.G841T	p.G281C	.	.	.
FTSJD1	55783	broad.mit.edu	36	16	69876416	69876416	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018348	exon3	c.T909C	p.P303P	.	.	.
ZFHX3	463	broad.mit.edu	36	16	71541974	71541974	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006885	exon3	c.C3111T	p.P1037P	.	.	.
CHST6	4166	broad.mit.edu	36	16	74070226	74070226	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021615	exon3	c.C1002A	p.R334R	.	.	.
CHST5	23563	broad.mit.edu	36	16	74120741	74120741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024533	exon3	c.C1043T	p.A348V	.	.	.
ADAMTS18	170692	broad.mit.edu	36	16	75884637	75884637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199355	exon20	c.G3026A	p.R1009Q	.	.	.
PLCG2	5336	broad.mit.edu	36	16	80531013	80531013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002661	exon30	c.G3329A	p.S1110N	.	.	.
TAF1C	9013	broad.mit.edu	36	16	82774218	82774218	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139353	exon6	c.G246C	p.K82N	.	.	.
ADAD2	161931	broad.mit.edu	36	16	82786219	82786219	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145400	exon4	c.C651T	p.S217S	.	.	.
FOXF1	2294	broad.mit.edu	36	16	85104153	85104153	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001451	exon2	c.G1101A	p.Q367Q	.	.	.
GALNS	2588	broad.mit.edu	36	16	87435874	87435874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000512	exon3	c.C251T	p.A84V	.	.	.
FANCA	2175	broad.mit.edu	36	16	88393543	88393543	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000135	exon9	c.C797T	p.T266M	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765026	9765026	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000833	exon14	c.C3876T	p.Y1292Y	.	.	.
RSL1D1	26156	broad.mit.edu	36	16	11843274	11843274	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015659	exon6	c.720delA	p.K240fs	.	.	.
CD19	930	broad.mit.edu	36	16	28857540	28857540	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001178098	exon13	c.1532delC	p.A511fs	.	.	.
ZNF629	23361	broad.mit.edu	36	16	30702920	30702920	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080417	exon3	c.230delC	p.P77fs	.	.	.
ZDHHC7	55625	broad.mit.edu	36	16	83567540	83567540	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017740	exon8	c.837delC	p.P279fs	.	.	.
RAI1	10743	broad.mit.edu	36	17	17640083	17640084	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030665	exon3	c.3096_3097insC	p.G1032fs	.	.	.
RNF43	54894	broad.mit.edu	36	17	53790814	53790815	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017763	exon9	c.1322_1323insA	p.P441fs	.	.	.
CSH1	1442	broad.mit.edu	36	17	59327404	59327405	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYH8	4626	broad.mit.edu	36	17	10256523	10256523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon14	c.C1305T	p.Y435Y	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11719128	11719128	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon53	c.G10380T	p.E3460D	.	.	.
ARHGAP44	9912	broad.mit.edu	36	17	12773038	12773038	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014859	exon7	c.G532A	p.A178T	.	.	.
MYO15A	51168	broad.mit.edu	36	17	17966155	17966155	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016239	exon2	c.C3316T	p.R1106W	.	.	.
DPH1	1801	broad.mit.edu	36	17	1889815	1889815	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001383	exon7	c.C712A	p.R238S	.	.	.
MAPK7	5598	broad.mit.edu	36	17	19226166	19226166	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139033	exon5	c.G1957A	p.A653T	.	.	.
TSR1	55720	broad.mit.edu	36	17	2179415	2179415	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018128	exon11	c.C1875T	p.A625A	.	.	.
TNFAIP1	7126	broad.mit.edu	36	17	23693468	23693468	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021137	exon6	c.G587A	p.R196H	.	.	.
VTN	7448	broad.mit.edu	36	17	23720100	23720100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000638	exon5	c.G746A	p.G249D	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23930372	23930372	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006461	exon19	c.G3031A	p.A1011T	.	.	.
ABHD15	116236	broad.mit.edu	36	17	24914177	24914177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198147	exon2	c.G935A	p.R312H	.	.	.
SSH2	85464	broad.mit.edu	36	17	25035708	25035708	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033389	exon5	c.A397G	p.S133G	.	.	.
SSH2	85464	broad.mit.edu	36	17	25145064	25145064	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033389	exon2	c.G81T	p.E27D	.	.	.
RAB11FIP4	84440	broad.mit.edu	36	17	26785189	26785189	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032932	exon3	c.C259T	p.L87L	.	.	.
CDK5R1	8851	broad.mit.edu	36	17	27838988	27838988	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003885	exon2	c.G237A	p.T79T	.	.	.
RAP1GAP2	23108	broad.mit.edu	36	17	2876481	2876481	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015085	exon21	c.C1953T	p.G651G	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29977346	29977346	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207313	exon2	c.C155T	p.T52M	.	.	.
AP2B1	163	broad.mit.edu	36	17	30990889	30990889	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001282	exon11	c.C1434T	p.T478T	.	.	.
GPR179	440435	broad.mit.edu	36	17	33738217	33738217	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004334	exon11	c.T4761C	p.P1587P	.	.	.
PCGF2	7703	broad.mit.edu	36	17	34145284	34145284	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007144	exon11	c.C753T	p.S251S	.	.	.
PLXDC1	57125	broad.mit.edu	36	17	34497448	34497448	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020405	exon8	c.G845A	p.R282H	.	.	.
MED1	5469	broad.mit.edu	36	17	34820432	34820432	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004774	exon17	c.C1568A	p.P523Q	.	.	.
ERBB2	2064	broad.mit.edu	36	17	35137711	35137711	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005862	exon30	c.A3566G	p.N1189S	.	.	.
KRT10	3858	broad.mit.edu	36	17	36230422	36230422	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000421	exon3	c.G734A	p.R245H	.	.	.
KRT10	3858	broad.mit.edu	36	17	36231783	36231783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000421	exon1	c.G581A	p.R194H	.	.	.
KRT12	3859	broad.mit.edu	36	17	36272977	36272977	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000223	exon6	c.C1240T	p.R414W	.	.	.
KRT39	390792	broad.mit.edu	36	17	36368636	36368636	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213656	exon7	c.C1219T	p.R407C	.	.	.
KRTAP4-3	85290	broad.mit.edu	36	17	36577499	36577499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033187	exon1	c.G452A	p.R151H	.	.	.
KRT13	3860	broad.mit.edu	36	17	36915135	36915136	+	Missense_Mutation	DNP	TA	AG	AG	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	TA	TA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153490	exon1	c.193_194CT	.	.	.	.
WNK4	65266	broad.mit.edu	36	17	38188400	38188400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032387	exon2	c.G717A	p.S239S	.	.	.
NBR1	4077	broad.mit.edu	36	17	38591900	38591900	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005899	exon6	c.G315T	p.R105S	.	.	.
DUSP3	1845	broad.mit.edu	36	17	39202551	39202551	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004090	exon3	c.C510A	p.L170L	.	.	.
C17orf53	78995	broad.mit.edu	36	17	39587513	39587513	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171251	exon6	c.A1513G	p.T505A	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39693391	39693391	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000342	exon6	c.T392C	p.V131A	.	.	.
ITGA2B	3674	broad.mit.edu	36	17	39816802	39816802	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000419	exon11	c.C984T	p.D328D	.	.	.
GPATCH8	23131	broad.mit.edu	36	17	39897390	39897390	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002909	exon3	c.C169T	p.Q57X	.	.	.
HIGD1B	51751	broad.mit.edu	36	17	40282189	40282189	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016438	exon2	c.C142T	p.R48W	.	.	.
DCAKD	79877	broad.mit.edu	36	17	40457505	40457505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024819	exon5	c.G518A	p.R173H	.	.	.
PLCD3	113026	broad.mit.edu	36	17	40553303	40553303	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133373	exon4	c.G599A	p.S200N	.	.	.
FMNL1	752	broad.mit.edu	36	17	40679078	40679078	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005892	exon24	c.G3045T	p.E1015D	.	.	.
SPNS3	201305	broad.mit.edu	36	17	4328667	4328667	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182538	exon9	c.G1165A	p.A389T	.	.	.
DLX4	1748	broad.mit.edu	36	17	45401987	45401987	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138281	exon1	c.C156T	p.G52G	.	.	.
PPP1R9B	84687	broad.mit.edu	36	17	45581516	45581516	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032595	exon1	c.G1358A	p.R453H	.	.	.
MYCBPAP	84073	broad.mit.edu	36	17	45949670	45949670	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032133	exon3	c.T351C	p.L117L	.	.	.
TM4SF5	9032	broad.mit.edu	36	17	4632574	4632574	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003963	exon3	c.C288T	p.F96F	.	.	.
GP1BA	2811	broad.mit.edu	36	17	4778521	4778521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000173	exon2	c.G1842A	p.R614R	.	.	.
KIF2B	84643	broad.mit.edu	36	17	49257010	49257010	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032559	exon1	c.A1617G	p.R539R	.	.	.
TRIM25	7706	broad.mit.edu	36	17	52331524	52331524	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005082	exon5	c.T1104C	p.H368H	.	.	.
DERL2	51009	broad.mit.edu	36	17	5330155	5330155	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016041	exon1	c.C51T	p.S17S	.	.	.
BZRAP1	9256	broad.mit.edu	36	17	53751602	53751602	+	Missense_Mutation	SNP	C	T	T	rs11652447	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004758	exon13	c.G1547A	p.S516N	.	.	.
TRIM37	4591	broad.mit.edu	36	17	54460816	54460816	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005207	exon19	c.C1999T	p.R667X	.	.	.
BRIP1	83990	broad.mit.edu	36	17	57118257	57118257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032043	exon19	c.G2627A	p.S876N	.	.	.
MRC2	9902	broad.mit.edu	36	17	58113355	58113355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006039	exon20	c.C2831T	p.T944I	.	.	.
DCAF7	10238	broad.mit.edu	36	17	59009670	59009670	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005828	exon2	c.C246T	p.G82G	.	.	.
FTSJ3	117246	broad.mit.edu	36	17	59255313	59255313	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017647	exon12	c.A1017T	p.E339D	.	.	.
SCN4A	6329	broad.mit.edu	36	17	59372671	59372671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000334	exon24	c.G4703A	p.C1568Y	.	.	.
WSCD1	23302	broad.mit.edu	36	17	5964641	5964641	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015253	exon9	c.C1664T	p.T555M	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60287175	60287175	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199340	exon11	c.G3551T	p.R1184M	.	.	.
CACNG5	27091	broad.mit.edu	36	17	62303962	62303962	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014404	exon1	c.C50T	p.A17V	.	.	.
CACNG4	27092	broad.mit.edu	36	17	62457195	62457195	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014405	exon4	c.C597T	p.G199G	.	.	.
FAM64A	54478	broad.mit.edu	36	17	6289188	6289188	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019013	exon2	c.G34A	p.V12M	.	.	.
PITPNM3	83394	broad.mit.edu	36	17	6305454	6305454	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031220	exon18	c.G2453T	p.R818L	.	.	.
KIAA0753	9851	broad.mit.edu	36	17	6423798	6423798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014804	exon19	c.C2897T	p.A966V	.	.	.
ABCA10	10349	broad.mit.edu	36	17	64695500	64695500	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080282	exon20	c.A2247G	p.A749A	.	.	.
FBXO39	162517	broad.mit.edu	36	17	6624511	6624511	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153230	exon2	c.C600T	p.I200I	.	.	.
YBX2	51087	broad.mit.edu	36	17	7134523	7134523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015982	exon5	c.G515A	p.R172H	.	.	.
FBF1	85302	broad.mit.edu	36	17	71445267	71445267	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080542	exon3	c.A6G	p.A2A	.	.	.
EVPL	2125	broad.mit.edu	36	17	71515698	71515698	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001988	exon22	c.C5183A	p.T1728N	.	.	.
NEURL4	84461	broad.mit.edu	36	17	7162369	7162369	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032442	exon24	c.G3895A	p.A1299T	.	.	.
PRPSAP1	5635	broad.mit.edu	36	17	71839992	71839992	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002766	exon4	c.G410T	p.R137M	.	.	.
CHRNB1	1140	broad.mit.edu	36	17	7299377	7299377	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000747	exon9	c.C1095T	p.P365P	.	.	.
ZBTB4	57659	broad.mit.edu	36	17	7307111	7307111	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020899	exon4	c.G1914T	p.E638D	.	.	.
ZBTB4	57659	broad.mit.edu	36	17	7307871	7307871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020899	exon4	c.G1154A	p.R385Q	.	.	.
TNFSF12	8742	broad.mit.edu	36	17	7401348	7401348	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003809	exon7	c.C707T	p.A236V	.	.	.
FXR2	9513	broad.mit.edu	36	17	7436604	7436604	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004860	exon15	c.C1768A	p.R590S	.	.	.
DNAH2	146754	broad.mit.edu	36	17	7581211	7581211	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020877	exon7	c.G1080A	p.K360K	.	.	.
FN3KRP	79672	broad.mit.edu	36	17	78278016	78278016	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024619	exon6	c.T610C	p.F204L	.	.	.
RCVRN	5957	broad.mit.edu	36	17	9748887	9748887	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002903	exon1	c.C336T	p.D112D	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11496893	11496893	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001372	exon14	c.2444delA	p.Q815fs	.	.	.
ZNF624	57547	broad.mit.edu	36	17	16466927	16466927	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020787	exon6	c.1998delA	p.K666fs	.	.	.
SDF2	6388	broad.mit.edu	36	17	24012990	24012990	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006923	exon1	c.32delG	p.G11fs	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26209415	26209415	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon9	c.2904delA	p.L968fs	.	.	.
TMEM92	162461	broad.mit.edu	36	17	45711336	45711336	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168215	exon5	c.346delC	p.P116fs	.	.	.
GP1BA	2811	broad.mit.edu	36	17	4778114	4778114	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000173	exon2	c.1435delA	p.K479fs	.	.	.
PRR11	55771	broad.mit.edu	36	17	54601953	54601953	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018304	exon2	c.58delA	p.K20fs	.	.	.
ABCA9	10350	broad.mit.edu	36	17	64515880	64515880	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080283	exon24	c.3239delT	p.L1080X	.	.	.
DVL2	1856	broad.mit.edu	36	17	7070318	7070318	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon15	c.1801delG	p.A601fs	.	.	.
CBX8	57332	broad.mit.edu	36	17	75383044	75383044	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020649	exon5	c.1155delT	p.F385fs	.	.	.
TMEM105	284186	broad.mit.edu	36	17	76902142	76902142	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_178520	exon3	c.294delG	p.G98fs	.	.	.
CTAGE1	64693	broad.mit.edu	36	18	18250812	18250812	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172241	exon1	c.A961G	p.T321A	.	.	.
NDC80	10403	broad.mit.edu	36	18	2568016	2568016	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006101	exon5	c.C352T	p.Q118X	.	.	.
DSC1	1823	broad.mit.edu	36	18	26968035	26968035	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004948	exon13	c.C1933T	p.P645S	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32428814	32428814	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon7	c.G673A	p.A225T	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32589235	32589235	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon22	c.G3863C	p.R1288T	.	.	.
TCEB3B	51224	broad.mit.edu	36	18	42815529	42815529	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016427	exon1	c.C105T	p.S35S	.	.	.
KATNAL2	83473	broad.mit.edu	36	18	42857827	42857827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031303	exon12	c.C992T	p.P331L	.	.	.
DCC	1630	broad.mit.edu	36	18	49102500	49102500	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005215	exon14	c.A2139G	p.A713A	.	.	.
POLI	11201	broad.mit.edu	36	18	50061100	50061100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007195	exon5	c.C625T	p.R209W	.	.	.
CETN1	1068	broad.mit.edu	36	18	570586	570586	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004066	exon1	c.C178A	p.L60M	.	.	.
SERPINB4	6318	broad.mit.edu	36	18	59479329	59479329	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006919	exon2	c.C102T	p.I34I	.	.	.
SERPINB11	89778	broad.mit.edu	36	18	59539113	59539113	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080475	exon7	c.G687A	p.P229P	.	.	.
SERPINB8	5271	broad.mit.edu	36	18	59805210	59805210	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002640	exon7	c.T843C	p.P281P	.	.	.
CDH7	1005	broad.mit.edu	36	18	61581197	61581197	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004361	exon2	c.C139T	p.R47C	.	.	.
CDH19	28513	broad.mit.edu	36	18	62353210	62353210	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021153	exon8	c.A1329T	p.T443T	.	.	.
DSEL	92126	broad.mit.edu	36	18	63331509	63331509	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.G1347T	p.K449N	.	.	.
CD226	10666	broad.mit.edu	36	18	65714211	65714211	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006566	exon4	c.G433T	p.G145X	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6872152	6872152	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010000	exon10	c.T830G	p.L277R	.	.	.
LAMA1	284217	broad.mit.edu	36	18	6940835	6940835	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005559	exon58	c.A8343C	p.K2781N	.	.	.
FAM69C	125704	broad.mit.edu	36	18	70254719	70254719	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001044369	exon4	c.G1257T	p.K419N	.	.	.
TSHZ1	10194	broad.mit.edu	36	18	71129332	71129332	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005786	exon2	c.C2847T	p.G949G	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75575519	75575519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_048368	exon8	c.G1071A	p.P357P	.	.	.
PARD6G	84552	broad.mit.edu	36	18	76019077	76019077	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032510	exon3	c.G699A	p.T233T	.	.	.
PTPRM	5797	broad.mit.edu	36	18	8384504	8384504	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002845	exon30	c.C4200T	p.C1400C	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8774753	8774753	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon6	c.A1643G	p.E548G	.	.	.
KIAA0802	23255	broad.mit.edu	36	18	8783058	8783058	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015210	exon8	c.C1950T	p.L650L	.	.	.
CEP192	55125	broad.mit.edu	36	18	13039146	13039146	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032142	exon16	c.2356delA	p.K786fs	.	.	.
ESCO1	114799	broad.mit.edu	36	18	17408504	17408504	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052911	exon4	c.299delA	p.K100fs	.	.	.
THOC1	9984	broad.mit.edu	36	18	255499	255499	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005131	exon2	c.86delA	p.N29fs	.	.	.
ZNF271	10778	broad.mit.edu	36	18	31141115	31141115	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
HAPLN4	404037	broad.mit.edu	36	19	19232885	19232886	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_023002	exon3	c.221_222insG	p.A74fs	.	.	.
DMKN	93099	broad.mit.edu	36	19	40696159	40696160	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001126058	exon1	c.59_60insG	p.E20fs	.	.	.
GRLF1	2909	broad.mit.edu	36	19	52116680	52116681	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004491	exon1	c.2908_2909insC	p.S970fs	.	.	.
TPRX1	284355	broad.mit.edu	36	19	52996924	52996925	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198479	exon2	c.1156_1157insA	p.H386fs	.	.	.
ZNF677	342926	broad.mit.edu	36	19	58432101	58432102	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182609	exon5	c.1691_1692insA	p.S564fs	.	.	.
RAVER1	125950	broad.mit.edu	36	19	10300472	10300472	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133452	exon3	c.G653A	p.R218H	.	.	.
SLC44A2	57153	broad.mit.edu	36	19	10597932	10597932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020428	exon2	c.C41T	p.T14M	.	.	.
ZNF799	90576	broad.mit.edu	36	19	12363429	12363429	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080821	exon4	c.C783A	p.A261A	.	.	.
CACNA1A	773	broad.mit.edu	36	19	13306249	13306249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174080	exon8	c.C1141T	p.R381W	.	.	.
ZSWIM4	65249	broad.mit.edu	36	19	13791237	13791237	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023072	exon9	c.G1640A	p.R547H	.	.	.
OR10H2	26538	broad.mit.edu	36	19	15699993	15699993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013939	exon1	c.C140T	p.A47V	.	.	.
SLC35E1	79939	broad.mit.edu	36	19	16538437	16538437	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024881	exon4	c.G662T	p.R221L	.	.	.
USHBP1	83878	broad.mit.edu	36	19	17228291	17228291	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031941	exon9	c.G1459A	p.V487M	.	.	.
C19orf62	29086	broad.mit.edu	36	19	17248698	17248698	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001033549	exon8	c.G766A	p.E256K	.	.	.
JAK3	3718	broad.mit.edu	36	19	17808972	17808972	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000215	exon13	c.C1752T	p.L584L	.	.	.
FKBP8	23770	broad.mit.edu	36	19	18510032	18510032	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012181	exon5	c.G766A	p.A256T	.	.	.
BTBD2	55643	broad.mit.edu	36	19	1941031	1941031	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017797	exon5	c.G960A	p.P320P	.	.	.
ZNF506	440515	broad.mit.edu	36	19	19766931	19766931	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145404	exon3	c.A669C	p.K223N	.	.	.
ZNF431	170959	broad.mit.edu	36	19	21157424	21157424	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133473	exon5	c.G478T	p.G160C	.	.	.
ZNF43	7594	broad.mit.edu	36	19	21783892	21783892	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003423	exon4	c.T787C	p.C263R	.	.	.
ZNF554	115196	broad.mit.edu	36	19	2785045	2785045	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102651	exon5	c.G812T	p.R271I	.	.	.
THEG	51298	broad.mit.edu	36	19	313260	313260	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199202	exon7	c.G1008C	p.M336I	.	.	.
NFIC	4782	broad.mit.edu	36	19	3400072	3400072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005597	exon7	c.C1019T	p.P340L	.	.	.
TSHZ3	57616	broad.mit.edu	36	19	36459801	36459801	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020856	exon2	c.G2738A	p.S913N	.	.	.
ANKRD27	84079	broad.mit.edu	36	19	37809535	37809535	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032139	exon16	c.G1459A	p.A487T	.	.	.
WDR88	126248	broad.mit.edu	36	19	38331592	38331592	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173479	exon5	c.C615T	p.F205F	.	.	.
LRP3	4037	broad.mit.edu	36	19	38387501	38387501	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002333	exon4	c.T378C	p.P126P	.	.	.
SLC7A10	56301	broad.mit.edu	36	19	38393979	38393979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019849	exon7	c.C1008A	p.T336T	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39942521	39942521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007248	exon4	c.G1025A	p.G342D	.	.	.
LSR	51599	broad.mit.edu	36	19	40449179	40449179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015925	exon5	c.G943A	p.A315T	.	.	.
MAG	4099	broad.mit.edu	36	19	40493363	40493363	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199216	exon9	c.C1518T	p.C506C	.	.	.
LIN37	55957	broad.mit.edu	36	19	40937208	40937208	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019104	exon9	c.G734A	p.R245Q	.	.	.
KIRREL2	84063	broad.mit.edu	36	19	41049246	41049246	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032123	exon16	c.T1870C	p.W624R	.	.	.
WDR62	284403	broad.mit.edu	36	19	41265920	41265920	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083961	exon11	c.G1487A	p.R496Q	.	.	.
ZNF607	84775	broad.mit.edu	36	19	42881172	42881172	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032689	exon5	c.G1700A	p.G567D	.	.	.
SH3GL1	6455	broad.mit.edu	36	19	4316618	4316618	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003025	exon4	c.G192A	p.S64S	.	.	.
LGALS4	3960	broad.mit.edu	36	19	43984807	43984807	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006149	exon8	c.C648T	p.P216P	.	.	.
UBXN6	80700	broad.mit.edu	36	19	4408678	4408678	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025241	exon1	c.A17G	p.Q6R	.	.	.
LRFN1	57622	broad.mit.edu	36	19	44497586	44497586	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020862	exon1	c.C231T	p.I77I	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4463763	4463763	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080400	exon3	c.G1167A	p.M389I	.	.	.
SUPT5H	6829	broad.mit.edu	36	19	44655353	44655353	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003169	exon21	c.G2099A	p.R700Q	.	.	.
DLL3	10683	broad.mit.edu	36	19	44686610	44686610	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203486	exon5	c.C712T	p.R238X	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45122181	45122181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon3	c.C1602T	p.R534R	.	.	.
FCGBP	8857	broad.mit.edu	36	19	45125041	45125041	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003890	exon2	c.C1068T	p.G356G	.	.	.
ZNF780B	163131	broad.mit.edu	36	19	45232373	45232373	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005851	exon5	c.A2233T	p.I745F	.	.	.
MAP3K10	4294	broad.mit.edu	36	19	45402236	45402236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002446	exon3	c.G868A	p.G290R	.	.	.
PLD3	23646	broad.mit.edu	36	19	45569466	45569466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031696	exon9	c.G725A	p.R242Q	.	.	.
SPTBN4	57731	broad.mit.edu	36	19	45711157	45711157	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020971	exon14	c.G2621A	p.R874H	.	.	.
EGLN2	112398	broad.mit.edu	36	19	46004310	46004310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080732	exon3	c.C854T	p.A285V	.	.	.
CYP2F1	1572	broad.mit.edu	36	19	46319792	46319792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000774	exon6	c.G736A	p.A246T	.	.	.
HNRNPUL1	11100	broad.mit.edu	36	19	46473907	46473907	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144732	exon5	c.A350G	p.N117S	.	.	.
MEGF8	1954	broad.mit.edu	36	19	47552924	47552924	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001410	exon26	c.G4580A	p.R1527H	.	.	.
LYPD3	27076	broad.mit.edu	36	19	48660391	48660391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014400	exon2	c.C137T	p.P46L	.	.	.
ZNF223	7766	broad.mit.edu	36	19	49262330	49262330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013361	exon5	c.G509A	p.R170H	.	.	.
PVRL2	5819	broad.mit.edu	36	19	50073370	50073370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002856	exon6	c.G1093A	p.V365M	.	.	.
MARK4	57787	broad.mit.edu	36	19	50489515	50489515	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199867	exon14	c.G1563T	p.E521D	.	.	.
ERCC2	2068	broad.mit.edu	36	19	50552463	50552463	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000400	exon15	c.T1384C	p.S462P	.	.	.
SYMPK	8189	broad.mit.edu	36	19	51049512	51049512	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004819	exon2	c.G82A	p.D28N	.	.	.
NANOS2	339345	broad.mit.edu	36	19	51109610	51109610	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029861	exon1	c.C182T	p.T61I	.	.	.
PTGIR	5739	broad.mit.edu	36	19	51818637	51818637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000960	exon2	c.G686A	p.R229H	.	.	.
CCDC9	26093	broad.mit.edu	36	19	52466222	52466222	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015603	exon11	c.C1129A	p.P377T	.	.	.
CYTH2	9266	broad.mit.edu	36	19	53668446	53668446	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004228	exon5	c.A433G	p.R145G	.	.	.
FLT3LG	2323	broad.mit.edu	36	19	54670775	54670775	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001459	exon3	c.C49T	p.L17L	.	.	.
MED25	81857	broad.mit.edu	36	19	55024052	55024052	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030973	exon5	c.C418T	p.R140W	.	.	.
NUP62	23636	broad.mit.edu	36	19	55103925	55103925	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012346	exon2	c.G952A	p.A318T	.	.	.
POLD1	5424	broad.mit.edu	36	19	55608920	55608920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002691	exon19	c.C2360T	p.P787L	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55713435	55713435	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080457	exon3	c.C1347T	p.A449A	.	.	.
CTU1	90353	broad.mit.edu	36	19	56294179	56294179	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145232	exon3	c.G538A	p.V180M	.	.	.
CD33	945	broad.mit.edu	36	19	56430291	56430291	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001772	exon5	c.C813T	p.L271L	.	.	.
SIGLEC6	946	broad.mit.edu	36	19	56722864	56722864	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001245	exon7	c.G1137T	p.Q379H	.	.	.
FPR3	2359	broad.mit.edu	36	19	57019485	57019485	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002030	exon2	c.C672T	p.I224I	.	.	.
ZNF350	59348	broad.mit.edu	36	19	57160144	57160144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021632	exon5	c.C1374T	p.N458N	.	.	.
ZNF468	90333	broad.mit.edu	36	19	58036635	58036635	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199132	exon5	c.C565T	p.Q189X	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59086824	59086824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon6	c.G614A	p.R205Q	.	.	.
PRPF31	26121	broad.mit.edu	36	19	59318993	59318993	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015629	exon7	c.C581T	p.A194V	.	.	.
LILRB5	10990	broad.mit.edu	36	19	59452278	59452278	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081442	exon3	c.G241A	p.A81T	.	.	.
KIR3DL3	115653	broad.mit.edu	36	19	59930898	59930898	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153443	exon4	c.G365T	p.R122I	.	.	.
KIR3DL2	3812	broad.mit.edu	36	19	60055490	60055490	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006737	exon3	c.G296A	p.R99H	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60185603	60185603	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174083	exon7	c.C656T	p.A219V	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61151363	61151363	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176811	exon1	c.C283T	p.R95X	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61157880	61157880	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176811	exon3	c.G644T	p.G215V	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61977929	61977929	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146326	exon12	c.A1523G	p.Y508C	.	.	.
PEG3	5178	broad.mit.edu	36	19	62018524	62018524	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146186	exon7	c.G3098T	p.C1033F	.	.	.
ZIK1	284307	broad.mit.edu	36	19	62793736	62793736	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010879	exon4	c.C745T	p.R249C	.	.	.
ZNF551	90233	broad.mit.edu	36	19	62888500	62888500	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138347	exon2	c.A92G	p.D31G	.	.	.
ZNF606	80095	broad.mit.edu	36	19	63203909	63203909	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025027	exon3	c.G42A	p.T14T	.	.	.
VAV1	7409	broad.mit.edu	36	19	6779446	6779446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005428	exon11	c.C1040T	p.T347M	 VAV1,kidney,NS,Substitution - coding silent,-1 	.	.
EMR1	2015	broad.mit.edu	36	19	6855182	6855182	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001974	exon8	c.T938C	p.F313S	.	.	.
MCOLN1	57192	broad.mit.edu	36	19	7497778	7497778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020533	exon4	c.C537T	p.N179N	.	.	.
LPPR3	79948	broad.mit.edu	36	19	765531	765531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024888	exon6	c.C818T	p.A273V	.	.	.
LPPR3	79948	broad.mit.edu	36	19	765912	765912	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024888	exon5	c.C573T	p.H191H	.	.	.
CD320	51293	broad.mit.edu	36	19	8273483	8273483	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016579	exon5	c.T713G	p.L238R	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8498319	8498319	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon22	c.G2377T	p.G793W	.	.	.
ADAMTS10	81794	broad.mit.edu	36	19	8566728	8566728	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030957	exon12	c.C1397A	p.T466K	.	.	.
MBD3L1	85509	broad.mit.edu	36	19	8814859	8814859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145208	exon1	c.G505A	p.A169T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8927842	8927842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.G20604A	p.L6868L	.	.	.
MUC16	94025	broad.mit.edu	36	19	8928610	8928610	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C19836A	p.A6612A	.	.	.
ZNF426	79088	broad.mit.edu	36	19	9500526	9500526	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024106	exon8	c.A1195G	p.K399E	.	.	.
ZNF791	163049	broad.mit.edu	36	19	12600502	12600502	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153358	exon4	c.1159delA	p.K387fs	.	.	.
CRTC1	23373	broad.mit.edu	36	19	18748993	18748993	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015321	exon14	c.1706delC	p.S569fs	.	.	.
CD79A	973	broad.mit.edu	36	19	47075450	47075450	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001783	exon3	c.385delC	p.P129fs	.	.	.
VASP	7408	broad.mit.edu	36	19	50717452	50717452	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003370	exon6	c.493delC	p.P165fs	.	.	.
SIX5	147912	broad.mit.edu	36	19	50960684	50960684	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175875	exon3	c.2135delG	p.G712fs	.	.	.
SYMPK	8189	broad.mit.edu	36	19	51013097	51013097	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004819	exon23	c.3041delG	p.G1014fs	.	.	.
C19orf73	55150	broad.mit.edu	36	19	54313949	54313949	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018111	exon1	c.143delC	p.P48fs	.	.	.
PTOV1	53635	broad.mit.edu	36	19	55055339	55055339	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017432	exon12	c.1242delG	p.M414fs	.	.	.
FIZ1	84922	broad.mit.edu	36	19	60800987	60800987	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032836	exon2	c.57delC	p.P19fs	.	.	.
LRRC8E	80131	broad.mit.edu	36	19	7870763	7870763	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025061	exon3	c.1356delC	p.F452fs	.	.	.
KIR3DX1	90011	broad.mit.edu	36	19	59736956	59736956	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
KCNA10	3744	broad.mit.edu	36	1	110861630	110861631	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005549	exon1	c.1303_1304insG	p.K435fs	.	.	.
DENND2C	163259	broad.mit.edu	36	1	114932049	114932050	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198459	exon16	c.2308_2309insT	p.V770fs	.	.	.
DNAH14	127602	broad.mit.edu	36	1	223214559	223214560	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144989	exon4	c.299_300insA	p.R100fs	.	.	.
LYST	1130	broad.mit.edu	36	1	234039826	234039827	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000081	exon5	c.915_916insA	p.N305fs	.	.	.
CCDC27	148870	broad.mit.edu	36	1	3676292	3676293	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152492	exon11	c.1829_1830insT	p.D610fs	.	.	.
KIAA0040	9674	broad.mit.edu	36	1	173396113	173396114	+	Frame_Shift_Ins	INS	-	TG	TG	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
UBE4B	10277	broad.mit.edu	36	1	10129711	10129711	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105562	exon19	c.G2567A	p.R856H	.	.	.
COL11A1	1301	broad.mit.edu	36	1	103225851	103225851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001854	exon30	c.G2428T	p.D810Y	.	.	.
CASZ1	54897	broad.mit.edu	36	1	10642602	10642602	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001079843	exon6	c.G1084A	p.A362T	.	.	.
PRMT6	55170	broad.mit.edu	36	1	107401301	107401301	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018137	exon1	c.A441G	p.E147E	.	.	.
PRMT6	55170	broad.mit.edu	36	1	107401421	107401421	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018137	exon1	c.C561A	p.A187A	.	.	.
C1orf127	148345	broad.mit.edu	36	1	10930707	10930707	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170754	exon12	c.C2072A	p.P691H	.	.	.
CHI3L2	1117	broad.mit.edu	36	1	111579862	111579862	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025199	exon5	c.G322T	p.G108W	.	.	.
LRIG2	9860	broad.mit.edu	36	1	113463526	113463526	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014813	exon17	c.A2829C	p.K943N	.	.	.
MAGI3	260425	broad.mit.edu	36	1	114003274	114003274	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152900	exon16	c.C2679A	p.R893R	.	.	.
TRIM33	51592	broad.mit.edu	36	1	114777824	114777824	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015906	exon5	c.A978G	p.L326L	.	.	.
SIKE1	80143	broad.mit.edu	36	1	115123395	115123395	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025073	exon3	c.C299T	p.A100V	.	.	.
SLC22A15	55356	broad.mit.edu	36	1	116371089	116371089	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018420	exon5	c.A651G	p.L217L	.	.	.
MAD2L2	10459	broad.mit.edu	36	1	11657439	11657439	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006341	exon9	c.C616T	p.R206C	.	.	.
ATP1A1	476	broad.mit.edu	36	1	116737064	116737064	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000701	exon11	c.C1398T	p.S466S	.	.	.
CLCN6	1185	broad.mit.edu	36	1	11820993	11820993	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001286	exon21	c.G2310A	p.P770P	.	.	.
PDE4DIP	9659	broad.mit.edu	36	1	143642308	143642308	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002811	exon1	c.C758A	p.P253H	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144239949	144239949	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003637	exon5	c.G389A	p.R130H	.	.	.
BCL9	607	broad.mit.edu	36	1	145562925	145562925	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004326	exon10	c.G3822T	p.Q1274H	.	.	.
BOLA1	51027	broad.mit.edu	36	1	148138495	148138495	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016074	exon2	c.C259T	p.R87W	.	.	.
PLEKHO1	51177	broad.mit.edu	36	1	148398323	148398323	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016274	exon6	c.A1211G	p.Y404C	.	.	.
SETDB1	9869	broad.mit.edu	36	1	149182047	149182047	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145415	exon7	c.A769G	p.K257E	.	.	.
FAM63A	55793	broad.mit.edu	36	1	149236743	149236743	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018379	exon10	c.C1310T	p.T437M	.	.	.
CGN	57530	broad.mit.edu	36	1	149763343	149763343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020770	exon7	c.G1286A	p.R429H	.	.	.
CELF3	11189	broad.mit.edu	36	1	149944211	149944211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007185	exon12	c.G1328A	p.G443D	.	.	.
HRNR	388697	broad.mit.edu	36	1	150457846	150457846	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009931	exon3	c.C2883T	p.G961G	.	.	.
FLG	2312	broad.mit.edu	36	1	150550990	150550990	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C2996T	p.A999V	.	.	.
FLG2	388698	broad.mit.edu	36	1	150593016	150593016	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014342	exon3	c.A3870C	p.E1290D	.	.	.
LCE3D	84648	broad.mit.edu	36	1	150818975	150818975	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032563	exon2	c.G62T	p.C21F	.	.	.
LCE2C	353140	broad.mit.edu	36	1	150915202	150915202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178429	exon2	c.C87T	p.P29P	.	.	.
KPRP	448834	broad.mit.edu	36	1	150999045	150999045	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025231	exon2	c.C357T	p.Y119Y	.	.	.
INTS3	65123	broad.mit.edu	36	1	151996805	151996805	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023015	exon10	c.T1091C	p.L364P	.	.	.
TPM3	7170	broad.mit.edu	36	1	152412022	152412022	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001043351	exon4	c.T441C	p.A147A	.	.	.
ADAM15	8751	broad.mit.edu	36	1	153297057	153297057	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207195	exon14	c.A1523G	p.D508G	.	.	.
EFNA3	1944	broad.mit.edu	36	1	153325255	153325255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004952	exon4	c.C536A	p.P179H	.	.	.
FDPS	2224	broad.mit.edu	36	1	153546569	153546569	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002004	exon3	c.G288A	p.E96E	.	.	.
KIAA0907	22889	broad.mit.edu	36	1	154166206	154166206	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014949	exon3	c.T305C	p.L102P	.	.	.
BGLAP	632	broad.mit.edu	36	1	154478665	154478665	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199173	exon1	c.C19A	p.L7I	.	.	.
PEAR1	375033	broad.mit.edu	36	1	155143276	155143276	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080471	exon6	c.C624T	p.P208P	.	.	.
SPTA1	6708	broad.mit.edu	36	1	156864127	156864127	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003126	exon40	c.T5576C	p.M1859T	.	.	.
DARC	2532	broad.mit.edu	36	1	157442517	157442517	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002036	exon2	c.C664T	p.P222S	.	.	.
KCNJ9	3765	broad.mit.edu	36	1	158320572	158320572	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004983	exon2	c.G128A	p.R43H	.	.	.
ATP1A4	480	broad.mit.edu	36	1	158392495	158392495	+	Missense_Mutation	SNP	G	A	A	rs61734683	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144699	exon4	c.G448A	p.V150I	.	.	.
HSPA6	3310	broad.mit.edu	36	1	159762466	159762466	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002155	exon1	c.G1394A	p.G465D	.	.	.
NOS1AP	9722	broad.mit.edu	36	1	160390889	160390889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164757	exon2	c.G176A	p.R59Q	.	.	.
DDR2	4921	broad.mit.edu	36	1	161015092	161015092	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014796	exon18	c.T2382C	p.D794D	.	.	.
ILDR2	387597	broad.mit.edu	36	1	165193852	165193852	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199351	exon2	c.G157A	p.V53I	.	.	.
C1orf114	57821	broad.mit.edu	36	1	167654899	167654899	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021179	exon4	c.G1191T	p.K397N	.	.	.
C1orf129	80133	broad.mit.edu	36	1	169228041	169228041	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025063	exon12	c.G1141A	p.V381I	.	.	.
METTL13	51603	broad.mit.edu	36	1	170019575	170019575	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007239	exon2	c.A226G	p.N76D	.	.	.
METTL13	51603	broad.mit.edu	36	1	170023685	170023685	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014955	exon4	c.C1043T	p.S348F	.	.	.
DNM3	26052	broad.mit.edu	36	1	170643576	170643576	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015569	exon21	c.G2564A	p.R855H	.	.	.
TNN	63923	broad.mit.edu	36	1	173359206	173359206	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon12	c.A2698G	p.M900V	.	.	.
TNR	7143	broad.mit.edu	36	1	173559172	173559172	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon23	c.C4021T	p.R1341C	.	.	.
TNR	7143	broad.mit.edu	36	1	173632545	173632545	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003285	exon5	c.G998A	p.R333Q	.	.	.
RASAL2	9462	broad.mit.edu	36	1	176694166	176694166	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170692	exon14	c.G3116T	p.G1039V	.	.	.
RALGPS2	55103	broad.mit.edu	36	1	177120910	177120910	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152663	exon12	c.G981A	p.P327P	.	.	.
TOR3A	64222	broad.mit.edu	36	1	177321573	177321573	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022371	exon3	c.C561T	p.D187D	.	.	.
ABL2	27	broad.mit.edu	36	1	177343661	177343661	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168239	exon12	c.G2947T	p.G983C	.	.	.
TDRD5	163589	broad.mit.edu	36	1	177828525	177828525	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199085	exon2	c.G152A	p.R51Q	.	.	.
LAMC2	3918	broad.mit.edu	36	1	181461398	181461398	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018891	exon8	c.C986A	p.P329H	.	.	.
GLT25D2	23127	broad.mit.edu	36	1	182272992	182272992	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015101	exon1	c.G123A	p.E41E	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184373259	184373259	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon88	c.G13589T	p.G4530V	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184425517	184425517	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon107	c.C16792T	p.R5598X	.	.	.
PTGS2	5743	broad.mit.edu	36	1	184910431	184910431	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000963	exon10	c.C1492G	p.P498A	.	.	.
IGSF21	84966	broad.mit.edu	36	1	18577403	18577403	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032880	exon10	c.C1400T	p.T467M	 IGSF21,large_intestine,colon,Substitution - Missense,0 	.	.
FAM5C	339479	broad.mit.edu	36	1	188334165	188334165	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon8	c.A1907G	p.N636S	.	.	.
CFHR2	3080	broad.mit.edu	36	1	195194709	195194709	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005666	exon5	c.A689C	p.Y230S	.	.	.
DENND1B	163486	broad.mit.edu	36	1	195881449	195881449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195215	exon9	c.C555T	p.P185P	.	.	.
TNNT2	7139	broad.mit.edu	36	1	199594994	199594994	+	Silent	SNP	G	A	A	rs45503195	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000364	exon16	c.C855T	p.R285R	.	.	.
LMOD1	25802	broad.mit.edu	36	1	200182007	200182007	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012134	exon1	c.A85C	p.M29L	.	.	.
OTUD3	23252	broad.mit.edu	36	1	20103419	20103419	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015207	exon5	c.G679A	p.D227N	.	.	.
KDM5B	10765	broad.mit.edu	36	1	201043929	201043929	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006618	exon1	c.C128A	p.A43E	.	.	.
FMOD	2331	broad.mit.edu	36	1	201583706	201583706	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002023	exon2	c.C316T	p.R106C	.	.	.
NFASC	23114	broad.mit.edu	36	1	203215199	203215199	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon17	c.G2098A	p.V700I	.	.	.
PM20D1	148811	broad.mit.edu	36	1	204085711	204085711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152491	exon1	c.G113A	p.R38Q	.	.	.
SRGAP2	23380	broad.mit.edu	36	1	204632822	204632822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170637	exon3	c.C380T	p.S127L	.	.	.
CR1	1378	broad.mit.edu	36	1	205849653	205849653	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000651	exon37	c.A6292T	p.R2098W	.	.	.
CD34	947	broad.mit.edu	36	1	206129171	206129171	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001773	exon6	c.C765T	p.S255S	.	.	.
FAM43B	163933	broad.mit.edu	36	1	20752146	20752146	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207334	exon1	c.G93A	p.S31S	.	.	.
TRAF5	7188	broad.mit.edu	36	1	209601070	209601070	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004619	exon7	c.T639G	p.A213A	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21140602	21140602	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003760	exon9	c.A1464G	p.Q488Q	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211481303	211481303	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012424	exon11	c.T1861A	p.L621M	.	.	.
RPS6KC1	26750	broad.mit.edu	36	1	211482598	211482598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012424	exon12	c.C2885T	p.A962V	.	.	.
SPATA17	128153	broad.mit.edu	36	1	216022202	216022202	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138796	exon8	c.C787T	p.R263W	.	.	.
DUSP10	11221	broad.mit.edu	36	1	219946339	219946339	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007207	exon3	c.G904A	p.A302T	.	.	.
HSPG2	3339	broad.mit.edu	36	1	22073783	22073783	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005529	exon27	c.G3441A	p.T1147T	.	.	.
C1orf65	164127	broad.mit.edu	36	1	221635096	221635096	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152610	exon1	c.G1656A	p.K552K	.	.	.
URB2	9816	broad.mit.edu	36	1	227845956	227845956	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014777	exon5	c.T3688G	p.L1230V	.	.	.
PGBD5	79605	broad.mit.edu	36	1	228535224	228535224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024554	exon5	c.C1055T	p.P352L	.	.	.
COG2	22796	broad.mit.edu	36	1	228893878	228893878	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007357	exon17	c.A2060G	p.D687G	.	.	.
DISC1	27185	broad.mit.edu	36	1	229969517	229969517	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164539	exon5	c.G1277A	p.G426E	.	.	.
SIPA1L2	57568	broad.mit.edu	36	1	230648110	230648110	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020808	exon9	c.C3141T	p.L1047L	.	.	.
PCNXL2	80003	broad.mit.edu	36	1	231401355	231401355	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014801	exon15	c.G3019A	p.V1007I	.	.	.
NID1	4811	broad.mit.edu	36	1	234223669	234223669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon13	c.C2654T	p.A885V	.	.	.
FMN2	56776	broad.mit.edu	36	1	238436991	238436991	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020066	exon5	c.C2256T	p.G752G	.	.	.
CHML	1122	broad.mit.edu	36	1	239864718	239864718	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001821	exon1	c.A974G	p.Y325C	.	.	.
CHML	1122	broad.mit.edu	36	1	239865396	239865396	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001821	exon1	c.C296G	p.T99R	.	.	.
CEP170	9859	broad.mit.edu	36	1	241394929	241394929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042405	exon12	c.G2662A	p.E888K	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245081217	245081217	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon33	c.G4741A	p.D1581N	.	.	.
OR2M7	391196	broad.mit.edu	36	1	246553719	246553719	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004691	exon1	c.T775C	p.C259R	.	.	.
RUNX3	864	broad.mit.edu	36	1	25101488	25101488	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031680	exon6	c.C1002T	p.S334S	.	.	.
RUNX3	864	broad.mit.edu	36	1	25106427	25106427	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031680	exon5	c.C655T	p.R219C	.	.	.
RUNX3	864	broad.mit.edu	36	1	25126713	25126713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031680	exon3	c.C420T	p.A140A	.	.	.
RHCE	6006	broad.mit.edu	36	1	25591155	25591155	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020485	exon4	c.C551T	p.A184V	.	.	.
MAN1C1	57134	broad.mit.edu	36	1	25945859	25945859	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020379	exon3	c.G751A	p.V251M	.	.	.
PAQR7	164091	broad.mit.edu	36	1	26062707	26062707	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178422	exon2	c.G211A	p.E71K	.	.	.
CATSPER4	378807	broad.mit.edu	36	1	26399135	26399135	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198137	exon7	c.A986G	p.E329G	.	.	.
ARID1A	8289	broad.mit.edu	36	1	26930607	26930607	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006015	exon3	c.G1728T	p.Q576H	.	.	.
MAP3K6	9064	broad.mit.edu	36	1	27557905	27557905	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004672	exon19	c.G2465A	p.G822D	.	.	.
XKR8	55113	broad.mit.edu	36	1	28166255	28166255	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018053	exon3	c.T1145C	p.F382S	.	.	.
MED18	54797	broad.mit.edu	36	1	28533851	28533851	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017638	exon3	c.G410A	p.R137H	.	.	.
MARCKSL1	65108	broad.mit.edu	36	1	32572893	32572893	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023009	exon2	c.G480T	p.E160D	.	.	.
SYNC	81493	broad.mit.edu	36	1	32933166	32933166	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161708	exon2	c.G1120A	p.A374T	.	.	.
WDR8	49856	broad.mit.edu	36	1	3553119	3553119	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017818	exon3	c.C310T	p.R104C	.	.	.
PSMB2	5690	broad.mit.edu	36	1	35847469	35847469	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199779	exon4	c.T338C	p.L113P	.	.	.
EIF2C4	192670	broad.mit.edu	36	1	36055178	36055178	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017629	exon2	c.A128T	p.D43V	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36242634	36242634	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177422	exon4	c.A62G	p.H21R	.	.	.
THRAP3	9967	broad.mit.edu	36	1	36527308	36527308	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005119	exon5	c.C1101T	p.T367T	.	.	.
SNIP1	79753	broad.mit.edu	36	1	37778793	37778793	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024700	exon3	c.G478A	p.G160R	.	.	.
INPP5B	3633	broad.mit.edu	36	1	38182078	38182078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005540	exon4	c.C227T	p.S76L	.	.	.
SMAP2	64744	broad.mit.edu	36	1	40655196	40655196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198979	exon9	c.G990A	p.M330I	.	.	.
HIVEP3	59269	broad.mit.edu	36	1	41820391	41820391	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024503	exon4	c.C2665T	p.R889C	.	.	.
PPCS	79717	broad.mit.edu	36	1	42697957	42697957	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077447	exon3	c.G190A	p.A64T	.	.	.
CDC20	991	broad.mit.edu	36	1	43601329	43601329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001255	exon11	c.G1442A	p.R481Q	.	.	.
KIAA0467	23334	broad.mit.edu	36	1	43680050	43680050	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015284	exon40	c.C5019A	p.T1673T	.	.	.
KDM4A	9682	broad.mit.edu	36	1	43898593	43898593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014663	exon4	c.G352A	p.E118K	.	.	.
PLK3	1263	broad.mit.edu	36	1	45041530	45041530	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004073	exon8	c.T952C	p.Y318H	.	.	.
PTCH2	8643	broad.mit.edu	36	1	45065508	45065508	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166292	exon16	c.G2432A	p.R811H	.	.	.
TESK2	10420	broad.mit.edu	36	1	45583582	45583582	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007170	exon11	c.C1233T	p.G411G	.	.	.
MMACHC	25974	broad.mit.edu	36	1	45745698	45745698	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015506	exon2	c.G165A	p.T55T	.	.	.
RAD54L	8438	broad.mit.edu	36	1	46511929	46511929	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142548	exon15	c.T1533C	p.R511R	.	.	.
FAAH	2166	broad.mit.edu	36	1	46651733	46651733	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001441	exon15	c.G1639A	p.V547M	.	.	.
C1orf175	374977	broad.mit.edu	36	1	54947291	54947291	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039464	exon23	c.C3684T	p.C1228C	.	.	.
C8B	732	broad.mit.edu	36	1	57195162	57195162	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000066	exon3	c.G259A	p.A87T	.	.	.
CHD5	26038	broad.mit.edu	36	1	6124810	6124810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015557	exon15	c.G2401A	p.A801T	.	.	.
GPR153	387509	broad.mit.edu	36	1	6233190	6233190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207370	exon5	c.C1061T	p.A354V	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65045742	65045742	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon9	c.A1638G	p.S546S	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65053101	65053101	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon11	c.A1880G	p.D627G	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7623059	7623059	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015215	exon7	c.G523A	p.V175I	.	.	.
CAMTA1	23261	broad.mit.edu	36	1	7719973	7719973	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015215	exon15	c.G3414A	p.S1138S	.	.	.
ERRFI1	54206	broad.mit.edu	36	1	7996515	7996515	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018948	exon4	c.G731A	p.R244Q	.	.	.
BCL10	8915	broad.mit.edu	36	1	85506111	85506111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003921	exon3	c.G489A	p.T163T	.	.	.
SAMD11	148398	broad.mit.edu	36	1	864310	864310	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152486	exon6	c.G458A	p.R153H	.	.	.
SH3GLB1	51100	broad.mit.edu	36	1	86972881	86972881	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016009	exon6	c.G579T	p.Q193H	.	.	.
GBP1	2633	broad.mit.edu	36	1	89297164	89297164	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002053	exon5	c.A579G	p.G193G	.	.	.
ZNF644	84146	broad.mit.edu	36	1	91176723	91176723	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201269	exon3	c.A2776T	p.S926C	.	.	.
HFM1	164045	broad.mit.edu	36	1	91557281	91557281	+	Nonsense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017975	exon25	c.T2754A	p.C918X	.	.	.
H6PD	9563	broad.mit.edu	36	1	9246502	9246502	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004285	exon5	c.C1363T	p.R455W	.	.	.
GFI1	2672	broad.mit.edu	36	1	92721572	92721572	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127215	exon2	c.C61A	p.P21T	.	.	.
ARHGAP29	9411	broad.mit.edu	36	1	94423571	94423571	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004815	exon17	c.C1835T	p.T612I	.	.	.
CCDC76	54482	broad.mit.edu	36	1	100379117	100379117	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019083	exon7	c.623delA	p.E208fs	.	.	.
FNDC7	163479	broad.mit.edu	36	1	109077661	109077661	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144937	exon10	c.2124delA	p.P708fs	.	.	.
ZNF687	57592	broad.mit.edu	36	1	149527703	149527703	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020832	exon3	c.2191delC	p.P731fs	.	.	.
USF1	7391	broad.mit.edu	36	1	159278148	159278148	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007122	exon6	c.389delG	p.G130fs	.	.	.
PRDX6	9588	broad.mit.edu	36	1	171721241	171721241	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004905	exon3	c.371delA	p.E124fs	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184235941	184235941	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon26	c.4016delT	p.V1339fs	.	.	.
TPR	7175	broad.mit.edu	36	1	184558153	184558153	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon45	c.6381delT	p.F2127fs	.	.	.
ASPM	259266	broad.mit.edu	36	1	195357913	195357913	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018136	exon15	c.3740delA	p.K1247fs	.	.	.
ZC3H11A	9877	broad.mit.edu	36	1	202083213	202083213	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014827	exon15	c.1321delA	p.K441fs	.	.	.
MTF1	4520	broad.mit.edu	36	1	38060762	38060762	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005955	exon9	c.1385delC	p.P462fs	.	.	.
FUBP1	8880	broad.mit.edu	36	1	78202566	78202566	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003902	exon11	c.901delA	p.I301fs	.	.	.
SNAP25	6616	broad.mit.edu	36	20	10225646	10225646	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130811	exon6	c.C355T	p.R119C	.	.	.
JAG1	182	broad.mit.edu	36	20	10577720	10577720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000214	exon11	c.G1384A	p.A462T	.	.	.
ISM1	140862	broad.mit.edu	36	20	13227713	13227713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080826	exon6	c.G1002A	p.T334T	.	.	.
C20orf7	79133	broad.mit.edu	36	20	13713886	13713886	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039375	exon1	c.T172C	p.W58R	.	.	.
SIRPB1	10326	broad.mit.edu	36	20	1500456	1500456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006065	exon3	c.G661A	p.V221I	.	.	.
BANF2	140836	broad.mit.edu	36	20	17664439	17664439	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178477	exon4	c.T256C	p.C86R	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19968253	19968253	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon12	c.G2028T	p.E676D	.	.	.
XRN2	22803	broad.mit.edu	36	20	21275098	21275098	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012255	exon17	c.T1575C	p.F525F	.	.	.
NKX2-2	4821	broad.mit.edu	36	20	21442072	21442072	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002509	exon1	c.G236A	p.S79N	.	.	.
SSTR4	6754	broad.mit.edu	36	20	22964593	22964593	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001052	exon1	c.G473A	p.R158Q	.	.	.
CD93	22918	broad.mit.edu	36	20	23014727	23014727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012072	exon1	c.G103A	p.A35T	.	.	.
C20orf3	57136	broad.mit.edu	36	20	24897640	24897640	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020531	exon8	c.C929A	p.P310H	.	.	.
GINS1	9837	broad.mit.edu	36	20	25346741	25346741	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021067	exon4	c.G240A	p.L80L	.	.	.
BPIL1	80341	broad.mit.edu	36	20	31065278	31065278	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025227	exon5	c.G310A	p.A104T	.	.	.
AHCY	191	broad.mit.edu	36	20	32342070	32342070	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000687	exon7	c.G802C	p.E268Q	.	.	.
GGT7	2686	broad.mit.edu	36	20	32903711	32903711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178026	exon12	c.G1495A	p.G499S	.	.	.
MYH7B	57644	broad.mit.edu	36	20	33029459	33029459	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020884	exon5	c.G116A	p.S39N	.	.	.
UQCC	55245	broad.mit.edu	36	20	33355242	33355242	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018244	exon10	c.A810C	p.T270T	.	.	.
CEP250	11190	broad.mit.edu	36	20	33562633	33562633	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon35	c.T7093C	p.L2365L	.	.	.
EPB41L1	2036	broad.mit.edu	36	20	34261049	34261049	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012156	exon15	c.G1894A	p.A632T	.	.	.
ATRN	8455	broad.mit.edu	36	20	3519903	3519903	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139322	exon19	c.C3272G	p.T1091S	.	.	.
TTI1	9675	broad.mit.edu	36	20	36075245	36075245	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014657	exon3	c.T388C	p.L130L	.	.	.
ADA	100	broad.mit.edu	36	20	42682377	42682377	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000022	exon11	c.G1055T	p.G352V	.	.	.
KCNK15	60598	broad.mit.edu	36	20	42812530	42812530	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022358	exon2	c.C630T	p.S210S	.	.	.
SEMG1	6406	broad.mit.edu	36	20	43270035	43270035	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003007	exon2	c.A683C	p.E228A	.	.	.
RBPJL	11317	broad.mit.edu	36	20	43376547	43376547	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014276	exon9	c.G948A	p.Q316Q	.	.	.
RBPJL	11317	broad.mit.edu	36	20	43378980	43378980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014276	exon12	c.G1521A	p.T507T	.	.	.
MMP9	4318	broad.mit.edu	36	20	44073748	44073748	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004994	exon6	c.G952A	p.A318T	.	.	.
NCOA5	57727	broad.mit.edu	36	20	44125438	44125438	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020967	exon7	c.G1118T	p.R373L	.	.	.
ZNF334	55713	broad.mit.edu	36	20	44563380	44563380	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018102	exon5	c.T2005G	p.S669A	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50134923	50134923	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199427	exon9	c.C1518T	p.S506S	.	.	.
ZNF831	128611	broad.mit.edu	36	20	57202510	57202510	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178457	exon1	c.A3041T	p.Q1014L	.	.	.
CDH4	1002	broad.mit.edu	36	20	59781617	59781617	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001794	exon4	c.C560T	p.P187L	.	.	.
GMEB2	26205	broad.mit.edu	36	20	61697448	61697448	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012384	exon6	c.C578T	p.T193M	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892094	61892094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025224	exon2	c.C461T	p.T154M	.	.	.
C20orf103	24141	broad.mit.edu	36	20	9446833	9446833	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199897	exon4	c.A490C	p.I164L	.	.	.
LPIN3	64900	broad.mit.edu	36	20	39420035	39420035	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022896	exon17	c.2139delC	p.L713fs	.	.	.
NEURL2	140825	broad.mit.edu	36	20	43952455	43952455	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080749	exon1	c.583delT	p.C195fs	.	.	.
STX16	8675	broad.mit.edu	36	20	56679005	56679005	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003763	exon5	c.525delT	p.H175fs	.	.	.
KRTAP13-1	140258	broad.mit.edu	36	21	30690483	30690483	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181599	exon1	c.T208C	p.Y70H	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31414991	31414991	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon29	c.C4342A	p.R1448R	.	.	.
TIAM1	7074	broad.mit.edu	36	21	31430188	31430188	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003253	exon24	c.G3817A	p.V1273M	.	.	.
ITSN1	6453	broad.mit.edu	36	21	34179279	34179279	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003024	exon37	c.C4741T	p.R1581C	.	.	.
CHAF1B	8208	broad.mit.edu	36	21	36710461	36710461	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005441	exon14	c.A1607G	p.Q536R	.	.	.
KCNJ15	3772	broad.mit.edu	36	21	38593345	38593345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170736	exon3	c.G292A	p.G98S	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40438510	40438510	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon17	c.C3037T	p.Q1013X	.	.	.
RIPK4	54101	broad.mit.edu	36	21	42039862	42039862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020639	exon5	c.G812A	p.R271Q	.	.	.
SLC37A1	54020	broad.mit.edu	36	21	42852198	42852198	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018964	exon12	c.T911C	p.V304A	.	.	.
PWP2	5822	broad.mit.edu	36	21	44368936	44368936	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005049	exon15	c.C1865T	p.A622V	.	.	.
ADARB1	104	broad.mit.edu	36	21	45420601	45420601	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015834	exon4	c.C557T	p.A186V	.	.	.
BACH1	571	broad.mit.edu	36	21	29620442	29620442	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206866	exon3	c.426delA	p.R142fs	.	.	.
NCRNA00175	378832	broad.mit.edu	36	21	45666799	45666799	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19480562	19480562	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058004	exon18	c.G1975A	p.A659T	.	.	.
LZTR1	8216	broad.mit.edu	36	22	19675925	19675925	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006767	exon9	c.G800A	p.R267H	.	.	.
TOP3B	8940	broad.mit.edu	36	22	20656264	20656264	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003935	exon5	c.G369T	p.E123D	.	.	.
ZNF280B	140883	broad.mit.edu	36	22	21172637	21172637	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080764	exon4	c.G1087A	p.E363K	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22902103	22902103	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199281	exon35	c.C6065T	p.A2022V	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25073798	25073798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184776	exon11	c.G2326A	p.G776S	.	.	.
PITPNB	23760	broad.mit.edu	36	22	26584426	26584426	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012399	exon10	c.G717A	p.T239T	.	.	.
NEFH	4744	broad.mit.edu	36	22	28216319	28216319	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021076	exon4	c.C2690A	p.A897D	.	.	.
TBC1D10A	83874	broad.mit.edu	36	22	29020043	29020043	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031937	exon7	c.G762A	p.P254P	.	.	.
GAL3ST1	9514	broad.mit.edu	36	22	29281873	29281873	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004861	exon4	c.T339C	p.N113N	.	.	.
SLC5A1	6523	broad.mit.edu	36	22	30810499	30810499	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000343	exon8	c.T738C	p.D246D	.	.	.
SYN3	8224	broad.mit.edu	36	22	31732393	31732393	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135774	exon2	c.G255A	p.T85T	.	.	.
HMGXB4	10042	broad.mit.edu	36	22	34019038	34019038	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003681	exon10	c.T1692C	p.C564C	.	.	.
RBFOX2	23543	broad.mit.edu	36	22	34494337	34494337	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082579	exon6	c.C666T	p.F222F	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35663519	35663519	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000395	exon14	c.G1723T	p.A575S	.	.	.
RAC2	5880	broad.mit.edu	36	22	35958787	35958787	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002872	exon3	c.G225A	p.T75T	.	.	.
CARD10	29775	broad.mit.edu	36	22	36230613	36230613	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014550	exon8	c.T1493C	p.M498T	.	.	.
C22orf23	84645	broad.mit.edu	36	22	36670139	36670139	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032561	exon7	c.G643A	p.A215T	.	.	.
SOX10	6663	broad.mit.edu	36	22	36700114	36700114	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006941	exon4	c.G735A	p.P245P	.	.	.
RPS19BP1	91582	broad.mit.edu	36	22	38255548	38255548	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194326	exon4	c.G306T	p.K102N	.	.	.
CACNA1I	8911	broad.mit.edu	36	22	38399934	38399935	+	Missense_Mutation	DNP	GC	CT	CT	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021096	exon29	c.4804_4805CT	.	.	.	.
GRAP2	9402	broad.mit.edu	36	22	38694082	38694082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004810	exon6	c.C550T	p.R184W	.	.	.
ADSL	158	broad.mit.edu	36	22	39087447	39087447	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000026	exon9	c.C872T	p.A291V	.	.	.
MCHR1	2847	broad.mit.edu	36	22	39407670	39407670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005297	exon2	c.C1061T	p.P354L	.	.	.
NUP50	10762	broad.mit.edu	36	22	43952811	43952811	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007172	exon5	c.C369A	p.T123T	.	.	.
WNT7B	7477	broad.mit.edu	36	22	44724488	44724488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058238	exon2	c.G274A	p.V92I	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45213948	45213948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014246	exon3	c.G4208A	p.R1403H	.	.	.
MOV10L1	54456	broad.mit.edu	36	22	48931400	48931400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164104	exon21	c.C2837T	p.A946V	.	.	.
PLXNB2	23654	broad.mit.edu	36	22	49061107	49061107	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012401	exon24	c.G4113A	p.T1371T	.	.	.
CECR5	27440	broad.mit.edu	36	22	15999152	15999152	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033070	exon8	c.1031delG	p.G344fs	.	.	.
CSF2RB	1439	broad.mit.edu	36	22	35663578	35663578	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000395	exon14	c.1782delG	p.L594fs	.	.	.
TTN	7273	broad.mit.edu	36	2	179343402	179343403	+	Frame_Shift_Ins	INS	-	CT	CT	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_133432	exon34	c.8224_8225insAG	p.A2742fs	.	.	.
CASP8	841	broad.mit.edu	36	2	201859498	201859499	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080125	exon9	c.1553_1554insG	p.M518fs	.	.	.
ITSN2	50618	broad.mit.edu	36	2	24338102	24338103	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147152	exon21	c.2369_2370insA	p.T790fs	.	.	.
OXER1	165140	broad.mit.edu	36	2	42844592	42844593	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148962	exon1	c.232_233insG	p.S78fs	.	.	.
C2orf55	343990	broad.mit.edu	36	2	98815400	98815401	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207362	exon5	c.383_384insA	p.I128fs	.	.	.
TBC1D8	11138	broad.mit.edu	36	2	101021507	101021507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102426	exon7	c.C1078T	p.H360Y	.	.	.
SLC5A7	60482	broad.mit.edu	36	2	107971071	107971071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021815	exon2	c.G28A	p.A10T	.	.	.
PDIA6	10130	broad.mit.edu	36	2	10846478	10846478	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005742	exon9	c.T921C	p.D307D	.	.	.
PSD4	23550	broad.mit.edu	36	2	113672915	113672915	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012455	exon15	c.C2752A	p.P918T	.	.	.
FOXD4L1	200350	broad.mit.edu	36	2	113973490	113973490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012184	exon1	c.C187T	p.R63W	.	.	.
NTSR2	23620	broad.mit.edu	36	2	11717629	11717629	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012344	exon3	c.C980T	p.A327V	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11823228	11823228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon2	c.G110A	p.R37H	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11823294	11823294	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon2	c.G176A	p.R59H	.	.	.
CLASP1	23332	broad.mit.edu	36	2	121841761	121841761	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142274	exon33	c.G3558A	p.P1186P	.	.	.
CNTNAP5	129684	broad.mit.edu	36	2	125238140	125238140	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130773	exon16	c.G2476A	p.G826R	.	.	.
GYPC	2995	broad.mit.edu	36	2	127130342	127130342	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016815	exon1	c.G33A	p.A11A	.	.	.
BIN1	274	broad.mit.edu	36	2	127524523	127524523	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139348	exon14	c.C1285A	p.Q429K	.	.	.
CCNT2	905	broad.mit.edu	36	2	135427712	135427712	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058241	exon9	c.T1217A	p.V406D	.	.	.
ZRANB3	84083	broad.mit.edu	36	2	135789536	135789536	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032143	exon7	c.G712A	p.G238R	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137716561	137716561	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080427	exon9	c.A2122T	p.I708F	.	.	.
NEB	4703	broad.mit.edu	36	2	152191881	152191881	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon70	c.G10228T	p.A3410S	.	.	.
NEB	4703	broad.mit.edu	36	2	152244734	152244734	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon31	c.C3091T	p.P1031S	.	.	.
NEB	4703	broad.mit.edu	36	2	152289046	152289046	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon8	c.G586A	p.V196I	.	.	.
GALNT5	11227	broad.mit.edu	36	2	157823765	157823765	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014568	exon1	c.G925T	p.G309W	.	.	.
PLA2R1	22925	broad.mit.edu	36	2	160552087	160552087	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007366	exon12	c.A1863G	p.R621R	.	.	.
SCN3A	6328	broad.mit.edu	36	2	165694920	165694920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006922	exon17	c.G2698A	p.G900S	.	.	.
SCN2A	6326	broad.mit.edu	36	2	165954110	165954110	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040143	exon26	c.G5548A	p.D1850N	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167006405	167006405	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon14	c.T1904C	p.F635S	.	.	.
LRP2	4036	broad.mit.edu	36	2	169820942	169820942	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon19	c.G2690T	p.S897I	.	.	.
CDCA7	83879	broad.mit.edu	36	2	173936364	173936364	+	Silent	SNP	C	T	T	rs35285795	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031942	exon4	c.C549T	p.S183S	.	.	.
AGPS	8540	broad.mit.edu	36	2	178034980	178034980	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003659	exon9	c.T984C	p.N328N	.	.	.
TTN	7273	broad.mit.edu	36	2	179141837	179141837	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.A50072G	p.Q16691R	.	.	.
TTN	7273	broad.mit.edu	36	2	179253278	179253278	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon136	c.C29634T	p.V9878V	.	.	.
TTN	7273	broad.mit.edu	36	2	179313078	179313078	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon45	c.A12038G	p.D4013G	.	.	.
TTN	7273	broad.mit.edu	36	2	179323110	179323110	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon46	c.C12262A	p.P4088T	.	.	.
TTN	7273	broad.mit.edu	36	2	179330591	179330591	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133432	exon44	c.C10463A	p.A3488D	.	.	.
CWC22	57703	broad.mit.edu	36	2	180546725	180546725	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020943	exon7	c.T631G	p.F211V	.	.	.
SSFA2	6744	broad.mit.edu	36	2	182494934	182494934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006751	exon16	c.G3225A	p.M1075I	.	.	.
NT5C1B	93034	broad.mit.edu	36	2	18600051	18600051	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020905	exon2	c.G898T	p.G300X	.	.	.
COL3A1	1281	broad.mit.edu	36	2	189574553	189574553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000090	exon34	c.G2384A	p.G795D	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191942579	191942579	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon12	c.C1099T	p.R367X	.	.	.
ANKRD44	91526	broad.mit.edu	36	2	197586534	197586534	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195144	exon18	c.G1870A	p.A624T	.	.	.
SATB2	23314	broad.mit.edu	36	2	200006442	200006442	+	Silent	SNP	G	A	A	rs34311963	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172509	exon3	c.C210T	p.D70D	.	.	.
AOX1	316	broad.mit.edu	36	2	201215732	201215732	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159	exon25	c.C2810T	p.T937M	.	.	.
CLK1	1195	broad.mit.edu	36	2	201433148	201433148	+	De_novo_Start_OutOfFrame	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162407	exon4	c.G552T	p.E184D	.	.	.
ALS2	57679	broad.mit.edu	36	2	202327474	202327474	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020919	exon6	c.C1637A	p.P546H	.	.	.
FAM117B	150864	broad.mit.edu	36	2	203328581	203328581	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173511	exon5	c.G1036A	p.V346M	.	.	.
NBEAL1	65065	broad.mit.edu	36	2	203761530	203761530	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114132	exon44	c.A6709G	p.N2237D	.	.	.
ADAM23	8745	broad.mit.edu	36	2	207140240	207140240	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003812	exon15	c.A1443T	p.R481S	.	.	.
IDH1	3417	broad.mit.edu	36	2	208816550	208816550	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005896	exon6	c.A544T	p.M182L	.	.	.
CPS1	1373	broad.mit.edu	36	2	211149368	211149368	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001875	exon3	c.C290A	p.A97D	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212278317	212278317	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon10	c.A1169T	p.N390I	.	.	.
MARCH4	57574	broad.mit.edu	36	2	216850674	216850674	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020814	exon3	c.C831T	p.Y277Y	.	.	.
STK11IP	114790	broad.mit.edu	36	2	220174352	220174352	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052902	exon3	c.T246C	p.V82V	.	.	.
FARSB	10056	broad.mit.edu	36	2	223213872	223213872	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005687	exon4	c.C292T	p.R98W	.	.	.
FARSB	10056	broad.mit.edu	36	2	223228993	223228993	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005687	exon1	c.T44C	p.L15P	.	.	.
IRS1	3667	broad.mit.edu	36	2	227371216	227371216	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005544	exon1	c.A483C	p.K161N	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227687603	227687603	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon8	c.C543A	p.A181A	.	.	.
SLC19A3	80704	broad.mit.edu	36	2	228260507	228260507	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025243	exon6	c.A1341T	p.A447A	.	.	.
B3GNT7	93010	broad.mit.edu	36	2	231970696	231970696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145236	exon2	c.G22A	p.V8I	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233406023	233406023	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001103148	exon21	c.G2724A	p.Q908Q	.	.	.
INPP5D	3635	broad.mit.edu	36	2	233736541	233736541	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005541	exon7	c.G882A	p.K294K	.	.	.
UGT1A1	54658	broad.mit.edu	36	2	234333862	234333862	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000463	exon1	c.G190A	p.A64T	.	.	.
ILKAP	80895	broad.mit.edu	36	2	238744326	238744326	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030768	exon11	c.C1035T	p.L345L	.	.	.
UBXN2A	165324	broad.mit.edu	36	2	24053382	24053382	+	Missense_Mutation	SNP	G	A	A	rs13386425	byHapMap	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181713	exon4	c.G220A	p.V74I	.	.	.
HDLBP	3069	broad.mit.edu	36	2	241850987	241850987	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005336	exon5	c.A262G	p.K88E	.	.	.
NCOA1	8648	broad.mit.edu	36	2	24804691	24804691	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003743	exon14	c.A2728G	p.S910G	.	.	.
OTOF	9381	broad.mit.edu	36	2	26540459	26540459	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194323	exon23	c.C2679T	p.D893D	.	.	.
IFT172	26160	broad.mit.edu	36	2	27537398	27537398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon23	c.G2509A	p.A837T	.	.	.
ALK	238	broad.mit.edu	36	2	29316167	29316167	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004304	exon13	c.C2238T	p.G746G	.	.	.
LBH	81606	broad.mit.edu	36	2	30333852	30333852	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030915	exon3	c.G179A	p.R60H	.	.	.
GALNT14	79623	broad.mit.edu	36	2	31069368	31069368	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024572	exon2	c.G139A	p.A47T	.	.	.
SPAST	6683	broad.mit.edu	36	2	32205584	32205584	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199436	exon7	c.A1066G	p.K356E	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32604167	32604167	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon59	c.C11888A	p.P3963Q	.	.	.
BIRC6	57448	broad.mit.edu	36	2	32653808	32653808	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016252	exon66	c.T13226C	p.V4409A	.	.	.
LTBP1	4052	broad.mit.edu	36	2	33099534	33099534	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206943	exon3	c.G620C	p.C207S	.	.	.
CEBPZ	10153	broad.mit.edu	36	2	37309264	37309264	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005760	exon2	c.T576C	p.Y192Y	.	.	.
SOS1	6654	broad.mit.edu	36	2	39103863	39103863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005633	exon10	c.G1210A	p.A404T	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39380421	39380421	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003618	exon16	c.G1145A	p.G382E	.	.	.
MAP4K3	8491	broad.mit.edu	36	2	39424094	39424094	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003618	exon4	c.A249T	p.R83R	.	.	.
ZFP36L2	678	broad.mit.edu	36	2	43306126	43306126	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006887	exon2	c.C321G	p.G107G	.	.	.
LRPPRC	10128	broad.mit.edu	36	2	44054802	44054802	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133259	exon9	c.T1146C	p.T382T	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48662935	48662935	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198594	exon1	c.G1659C	p.A553A	.	.	.
TSPYL6	388951	broad.mit.edu	36	2	54336613	54336613	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003937	exon1	c.G180A	p.A60A	.	.	.
USP34	9736	broad.mit.edu	36	2	61346712	61346712	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014709	exon42	c.C5528T	p.A1843V	.	.	.
XPO1	7514	broad.mit.edu	36	2	61563060	61563060	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003400	exon23	c.T2931C	p.Y977Y	.	.	.
C2orf86	51057	broad.mit.edu	36	2	63514471	63514471	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015910	exon9	c.A737G	p.N246S	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65425518	65425518	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon2	c.C43T	p.R15C	.	.	.
ARHGAP25	9938	broad.mit.edu	36	2	68903051	68903051	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166276	exon9	c.C1255T	p.P419S	.	.	.
C2orf42	54980	broad.mit.edu	36	2	70262090	70262090	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017880	exon3	c.G532T	p.G178C	.	.	.
DYSF	8291	broad.mit.edu	36	2	71763263	71763263	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130982	exon55	c.T6248C	p.I2083T	.	.	.
DCTN1	1639	broad.mit.edu	36	2	74445723	74445723	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023019	exon21	c.T2781C	p.S927S	.	.	.
HK2	3099	broad.mit.edu	36	2	74962374	74962374	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000189	exon11	c.T1599G	p.L533L	.	.	.
HK2	3099	broad.mit.edu	36	2	74967296	74967296	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000189	exon15	c.C2207A	p.P736H	.	.	.
C2orf3	6936	broad.mit.edu	36	2	75745408	75745408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003203	exon17	c.C2238T	p.V746V	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86122523	86122523	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon24	c.G3572T	p.R1191M	.	.	.
RNF103	7844	broad.mit.edu	36	2	86684919	86684919	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198951	exon5	c.C1604T	p.S535L	.	.	.
PROM2	150696	broad.mit.edu	36	2	95304202	95304202	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144707	exon1	c.C142A	p.R48R	.	.	.
PROM2	150696	broad.mit.edu	36	2	95307451	95307451	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144707	exon8	c.A1022C	p.E341A	.	.	.
LOC285033	285033	broad.mit.edu	36	2	96269864	96269864	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037228	exon1	c.C76T	p.R26X	.	.	.
ANKRD39	51239	broad.mit.edu	36	2	96883870	96883870	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016466	exon2	c.C136T	p.R46X	.	.	.
FAM178B	51252	broad.mit.edu	36	2	96923414	96923414	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016490	exon2	c.G72T	p.K24N	.	.	.
TMEM131	23505	broad.mit.edu	36	2	97740156	97740156	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015348	exon41	c.C5490T	p.G1830G	.	.	.
CNGA3	1261	broad.mit.edu	36	2	98372580	98372580	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001298	exon6	c.C477T	p.I159I	.	.	.
MGAT4A	11320	broad.mit.edu	36	2	98661206	98661206	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012214	exon3	c.G255A	p.K85K	.	.	.
TSGA10	80705	broad.mit.edu	36	2	99003376	99003376	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025244	exon18	c.G1616T	p.R539M	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102491777	102491777	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011552	exon6	c.1441delA	p.K481fs	.	.	.
CCDC148	130940	broad.mit.edu	36	2	158785463	158785463	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138803	exon11	c.1260delA	p.K420fs	.	.	.
ASNSD1	54529	broad.mit.edu	36	2	190240079	190240079	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019048	exon4	c.976delT	p.F326fs	.	.	.
MYO1B	4430	broad.mit.edu	36	2	191966149	191966149	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012223	exon20	c.2182delA	p.K728fs	.	.	.
INO80D	54891	broad.mit.edu	36	2	206629541	206629541	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017759	exon4	c.590delC	p.P197fs	.	.	.
ZDBF2	57683	broad.mit.edu	36	2	206884303	206884303	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020923	exon5	c.6806delT	p.L2269fs	.	.	.
STON1-GTF2A1L	286749	broad.mit.edu	36	2	48662703	48662703	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198594	exon1	c.1427delA	p.E476fs	.	.	.
SEC62	7095	broad.mit.edu	36	3	171183341	171183342	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003262	exon4	c.404_405insA	p.T135fs	.	.	.
SYNPR	132204	broad.mit.edu	36	3	63441674	63441675	+	Splice_Site	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
FANCD2	2177	broad.mit.edu	36	3	10110979	10110979	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033084	exon40	c.C3895T	p.R1299C	.	.	.
C3orf24	115795	broad.mit.edu	36	3	10121398	10121398	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164839	exon2	c.C61T	p.R21W	.	.	.
SENP7	57337	broad.mit.edu	36	3	102543257	102543257	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020654	exon15	c.C2163T	p.S721S	.	.	.
NFKBIZ	64332	broad.mit.edu	36	3	103055095	103055095	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005474	exon6	c.T735C	p.G245G	.	.	.
CD47	961	broad.mit.edu	36	3	109272661	109272661	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198793	exon3	c.A459G	p.I153M	.	.	.
HHLA2	11148	broad.mit.edu	36	3	109555210	109555210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007072	exon4	c.C311T	p.A104V	.	.	.
BOC	91653	broad.mit.edu	36	3	114452122	114452122	+	Missense_Mutation	SNP	C	T	T	rs34208374	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033254	exon4	c.C128T	p.A43V	.	.	.
KIAA2018	205717	broad.mit.edu	36	3	114856811	114856811	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009899	exon7	c.A6408G	p.S2136S	.	.	.
ZNF80	7634	broad.mit.edu	36	3	115437961	115437961	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007136	exon1	c.C651T	p.Y217Y	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115553021	115553021	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164343	exon11	c.C375T	p.G125G	.	.	.
STXBP5L	9515	broad.mit.edu	36	3	122156506	122156506	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014980	exon3	c.C219T	p.P73P	.	.	.
POLQ	10721	broad.mit.edu	36	3	122741002	122741002	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199420	exon4	c.G599A	p.R200H	.	.	.
MYLK	4638	broad.mit.edu	36	3	124839724	124839724	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon29	c.G4845A	p.A1615A	.	.	.
CHCHD6	84303	broad.mit.edu	36	3	127905906	127905906	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032343	exon1	c.C61T	p.R21W	.	.	.
SEC61A1	29927	broad.mit.edu	36	3	129257071	129257071	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013336	exon3	c.T98C	p.L33P	.	.	.
IFT122	55764	broad.mit.edu	36	3	130720641	130720641	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052990	exon25	c.C3063T	p.S1021S	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130774433	130774433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon14	c.G2879A	p.G960D	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131768501	131768501	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon4	c.C1548T	p.G516G	.	.	.
SRPRB	58477	broad.mit.edu	36	3	135021246	135021246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021203	exon8	c.C762T	p.D254D	.	.	.
CEP63	80254	broad.mit.edu	36	3	135751689	135751689	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042383	exon10	c.A1139T	p.Q380L	.	.	.
NCK1	4690	broad.mit.edu	36	3	138129620	138129620	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006153	exon2	c.A87G	p.L29L	.	.	.
ARMC8	25852	broad.mit.edu	36	3	139425218	139425218	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213654	exon6	c.C346T	p.R116C	.	.	.
TXNDC6	347736	broad.mit.edu	36	3	139507990	139507990	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178130	exon8	c.C300A	p.T100T	.	.	.
PIK3CB	5291	broad.mit.edu	36	3	139960794	139960794	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006219	exon1	c.G82A	p.G28S	.	.	.
CNTN6	27255	broad.mit.edu	36	3	1419145	1419145	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014461	exon22	c.G2961T	p.E987D	.	.	.
ACPL2	92370	broad.mit.edu	36	3	142480982	142480982	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152282	exon6	c.A311G	p.Y104C	.	.	.
ZBTB38	253461	broad.mit.edu	36	3	142643956	142643956	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080412	exon8	c.C36T	p.D12D	.	.	.
PLOD2	5352	broad.mit.edu	36	3	147324697	147324697	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000935	exon2	c.T119C	p.L40S	.	.	.
TM4SF1	4071	broad.mit.edu	36	3	150578005	150578005	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014220	exon1	c.C20T	p.A7V	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151860441	151860441	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon14	c.C1920T	p.A640A	.	.	.
MED12L	116931	broad.mit.edu	36	3	152609765	152609765	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon38	c.G5760A	p.R1920R	.	.	.
P2RY1	5028	broad.mit.edu	36	3	154036688	154036688	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002563	exon1	c.A427G	p.T143A	.	.	.
KCNAB1	7881	broad.mit.edu	36	3	157343891	157343891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003471	exon1	c.G230A	p.G77D	.	.	.
ANKRD28	23243	broad.mit.edu	36	3	15737456	15737456	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015199	exon8	c.A876G	p.L292L	.	.	.
RFTN1	23180	broad.mit.edu	36	3	16510238	16510238	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015150	exon2	c.C143T	p.A48V	.	.	.
MECOM	2122	broad.mit.edu	36	3	170316395	170316395	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105077	exon8	c.G1590T	p.A530A	.	.	.
CLDN11	5010	broad.mit.edu	36	3	171633135	171633135	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005602	exon3	c.T521A	p.V174D	.	.	.
SLC7A14	57709	broad.mit.edu	36	3	171667777	171667777	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020949	exon8	c.G2076A	p.T692T	.	.	.
TBC1D5	9779	broad.mit.edu	36	3	17393101	17393101	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134380	exon10	c.C621T	p.H207H	.	.	.
PIK3CA	5290	broad.mit.edu	36	3	180434779	180434779	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006218	exon21	c.A3140G	p.H1047R	 PIK3CA,breast,NS,Substitution - Missense,0 	.	.
ACTL6A	86	broad.mit.edu	36	3	180774876	180774876	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178042	exon5	c.A277C	p.K93Q	.	.	.
CCDC39	339829	broad.mit.edu	36	3	181855390	181855390	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181426	exon7	c.G784A	p.V262I	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185520275	185520275	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182917	exon6	c.C529T	p.R177C	.	.	.
CHRD	8646	broad.mit.edu	36	3	185585625	185585625	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003741	exon14	c.G1723T	p.G575C	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186651788	186651788	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon7	c.C1189T	p.R397X	.	.	.
ADIPOQ	9370	broad.mit.edu	36	3	188055175	188055175	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004797	exon3	c.T723C	p.H241H	.	.	.
MASP1	5648	broad.mit.edu	36	3	188453780	188453780	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031849	exon6	c.A762G	p.K254K	.	.	.
CPN2	1370	broad.mit.edu	36	3	195544429	195544429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080513	exon2	c.C698A	p.P233H	.	.	.
TMEM44	93109	broad.mit.edu	36	3	195819230	195819230	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138399	exon6	c.G670A	p.A224T	.	.	.
ZNF385D	79750	broad.mit.edu	36	3	21437865	21437865	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024697	exon8	c.G1033C	p.A345P	.	.	.
CNTN4	152330	broad.mit.edu	36	3	3060339	3060339	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175613	exon14	c.G1778T	p.W593L	.	.	.
IL5RA	3568	broad.mit.edu	36	3	3114615	3114615	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000564	exon8	c.C648T	p.N216N	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38571011	38571011	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon26	c.A4522G	p.T1508A	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38576831	38576831	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon23	c.C4056T	p.G1352G	.	.	.
TTC21A	199223	broad.mit.edu	36	3	39134616	39134616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105513	exon6	c.C646T	p.H216Y	.	.	.
ULK4	54986	broad.mit.edu	36	3	41721565	41721565	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017886	exon27	c.C2769T	p.D923D	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42239491	42239491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon16	c.C2120T	p.T707M	.	.	.
KIF15	56992	broad.mit.edu	36	3	44844764	44844764	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020242	exon24	c.A2911G	p.S971G	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47018268	47018268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015175	exon30	c.C4730T	p.A1577V	.	.	.
SETD2	29072	broad.mit.edu	36	3	47137626	47137626	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014159	exon3	c.T3504C	p.V1168V	.	.	.
CELSR3	1951	broad.mit.edu	36	3	48674665	48674665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001407	exon1	c.G407A	p.R136H	.	.	.
ARIH2	10425	broad.mit.edu	36	3	48940070	48940070	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006321	exon3	c.A75G	p.E25E	.	.	.
USP19	10869	broad.mit.edu	36	3	49127543	49127543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199162	exon14	c.G1998A	p.A666A	.	.	.
CCDC71	64925	broad.mit.edu	36	3	49175648	49175648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022903	exon2	c.C998T	p.A333V	.	.	.
CCDC36	339834	broad.mit.edu	36	3	49269522	49269522	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178173	exon10	c.C1588T	p.Q530X	.	.	.
BSN	8927	broad.mit.edu	36	3	49663338	49663338	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon4	c.G1808A	p.S603N	.	.	.
IFRD2	7866	broad.mit.edu	36	3	50300663	50300663	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006764	exon12	c.G1484A	p.R495Q	.	.	.
CACNA2D2	9254	broad.mit.edu	36	3	50488593	50488593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006030	exon2	c.G248A	p.G83D	.	.	.
DNAH1	25981	broad.mit.edu	36	3	52358412	52358412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015512	exon14	c.G2462A	p.R821H	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52795420	52795420	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166434	exon11	c.G1237T	p.G413C	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63951473	63951473	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177387	exon10	c.G1580A	p.R527Q	.	.	.
LRIG1	26018	broad.mit.edu	36	3	66517364	66517364	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015541	exon14	c.G1812A	p.T604T	.	.	.
PDZRN3	23024	broad.mit.edu	36	3	73515694	73515694	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015009	exon10	c.A2713T	p.M905L	.	.	.
CNTN3	5067	broad.mit.edu	36	3	74429802	74429802	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020872	exon17	c.A2397C	p.E799D	.	.	.
GRM7	2917	broad.mit.edu	36	3	7696740	7696740	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000844	exon9	c.A2456G	p.Y819C	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78878598	78878598	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon5	c.A642G	p.K214K	.	.	.
ROBO1	6091	broad.mit.edu	36	3	79070569	79070569	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon4	c.G371T	p.S124I	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9751020	9751020	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004634	exon2	c.C196T	p.R66C	.	.	.
PRRT3	285368	broad.mit.edu	36	3	9966197	9966197	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207351	exon2	c.C603T	p.P201P	.	.	.
ST3GAL6	10402	broad.mit.edu	36	3	99986532	99986532	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006100	exon7	c.A389G	p.K130R	.	.	.
MYLK	4638	broad.mit.edu	36	3	124940550	124940550	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053025	exon7	c.472delG	p.E158fs	.	.	.
CCDC37	348807	broad.mit.edu	36	3	127624873	127624873	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182628	exon12	c.1098delC	p.I366fs	.	.	.
SLCO2A1	6578	broad.mit.edu	36	3	135146751	135146751	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005630	exon10	c.1339delG	p.D447fs	.	.	.
ABCC5	10057	broad.mit.edu	36	3	185150545	185150547	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	AGA	AGA	AGA	-	AGA	AGA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005688	exon21	c.3005_3007del	p.1002_1003del	.	.	.
LIPH	200879	broad.mit.edu	36	3	186719641	186719641	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_139248	exon6	c.869delA	p.E290fs	.	.	.
CRYBG3	131544	broad.mit.edu	36	3	99079334	99079334	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SNX25	83891	broad.mit.edu	36	4	186504698	186504699	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031953	exon13	c.1709_1710insA	p.L570fs	.	.	.
NKX6-1	4825	broad.mit.edu	36	4	85638389	85638390	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006168	exon1	c.17_18insG	p.A6fs	.	.	.
DKK2	27123	broad.mit.edu	36	4	108066484	108066484	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014421	exon2	c.G294T	p.S98S	.	.	.
CCDC109B	55013	broad.mit.edu	36	4	110800954	110800954	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017918	exon3	c.A330G	p.A110A	.	.	.
PITX2	5308	broad.mit.edu	36	4	111773084	111773084	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153426	exon3	c.C48T	p.G16G	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113572853	113572853	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025144	exon11	c.C2701A	p.L901I	.	.	.
NEUROG2	63973	broad.mit.edu	36	4	113655788	113655788	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024019	exon2	c.G293A	p.R98Q	.	.	.
C4orf21	55345	broad.mit.edu	36	4	113758551	113758551	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018392	exon6	c.C2096T	p.A699V	.	.	.
SPON2	10417	broad.mit.edu	36	4	1155696	1155696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199021	exon4	c.C164T	p.A55V	.	.	.
PRSS12	8492	broad.mit.edu	36	4	119422664	119422664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003619	exon13	c.G2503A	p.G835R	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123476808	123476808	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon68	c.G11860T	p.G3954X	.	.	.
NUDT6	11162	broad.mit.edu	36	4	124058255	124058255	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007083	exon2	c.C293A	p.P98H	.	.	.
SPATA5	166378	broad.mit.edu	36	4	124069726	124069726	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145207	exon3	c.A370C	p.R124R	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457844	126457844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.C828T	p.D276D	.	.	.
FAT4	79633	broad.mit.edu	36	4	126459633	126459633	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.G2617A	p.V873M	.	.	.
FAT4	79633	broad.mit.edu	36	4	126591474	126591474	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon9	c.A9853G	p.N3285D	.	.	.
PHF17	79960	broad.mit.edu	36	4	129992803	129992803	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199320	exon6	c.G626A	p.C209Y	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138671522	138671522	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.C1171T	p.L391L	.	.	.
NAA15	80155	broad.mit.edu	36	4	140502464	140502464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057175	exon14	c.G1676A	p.R559K	.	.	.
TBC1D9	23158	broad.mit.edu	36	4	141779971	141779972	+	Missense_Mutation	DNP	AC	CA	CA	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	AC	AC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015130	exon14	c.2398_2399TG	.	.	.	.
RNF150	57484	broad.mit.edu	36	4	142272932	142272932	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020724	exon1	c.G481A	p.A161T	.	.	.
ANAPC10	10393	broad.mit.edu	36	4	146236696	146236696	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014885	exon2	c.T6G	p.T2T	.	.	.
ZNF827	152485	broad.mit.edu	36	4	146916409	146916409	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178835	exon10	c.A2675C	p.K892T	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151219705	151219705	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040260	exon1	c.G76T	p.G26W	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154742836	154742836	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon22	c.G2346A	p.S782S	.	.	.
PLRG1	5356	broad.mit.edu	36	4	155685063	155685063	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002669	exon7	c.C578T	p.P193L	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851552	156851552	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon6	c.C785T	p.T262I	.	.	.
TAPT1	202018	broad.mit.edu	36	4	15798983	15798983	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153365	exon5	c.A706C	p.I236L	.	.	.
FSTL5	56884	broad.mit.edu	36	4	162916572	162916572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020116	exon5	c.G514A	p.D172N	.	.	.
LAP3	51056	broad.mit.edu	36	4	17199604	17199604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015907	exon7	c.G769A	p.E257K	.	.	.
NCAPG	64151	broad.mit.edu	36	4	17435718	17435718	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022346	exon10	c.G1413A	p.A471A	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183912694	183912694	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon21	c.G4180A	p.G1394R	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184855876	184855876	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199053	exon25	c.G2745A	p.T915T	.	.	.
ENPP6	133121	broad.mit.edu	36	4	185311878	185311878	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153343	exon2	c.C244T	p.R82C	.	.	.
SNX25	83891	broad.mit.edu	36	4	186490773	186490773	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031953	exon10	c.G1288A	p.V430M	.	.	.
UFSP2	55325	broad.mit.edu	36	4	186573956	186573956	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018359	exon5	c.G393A	p.T131T	.	.	.
SORBS2	8470	broad.mit.edu	36	4	186781613	186781613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021069	exon13	c.G1952A	p.R651H	.	.	.
FAT1	2195	broad.mit.edu	36	4	187867706	187867706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon2	c.C270T	p.L90L	.	.	.
ZFYVE28	57732	broad.mit.edu	36	4	2313039	2313039	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172656	exon3	c.C282T	p.H94H	.	.	.
PPARGC1A	10891	broad.mit.edu	36	4	23424754	23424754	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013261	exon8	c.C1450G	p.L484V	.	.	.
SEL1L3	23231	broad.mit.edu	36	4	25369665	25369665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015187	exon21	c.G3079A	p.E1027K	.	.	.
FAM193A	8603	broad.mit.edu	36	4	2665171	2665171	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003704	exon14	c.G1991T	p.R664M	.	.	.
HTT	3064	broad.mit.edu	36	4	3102818	3102818	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon15	c.G1994A	p.R665H	.	.	.
HTT	3064	broad.mit.edu	36	4	3146314	3146314	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon32	c.G4235A	p.R1412H	.	.	.
HTT	3064	broad.mit.edu	36	4	3200440	3200440	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon59	c.C8015T	p.S2672L	.	.	.
ZNF141	7700	broad.mit.edu	36	4	356976	356976	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003441	exon4	c.T750A	p.T250T	.	.	.
WDR19	57728	broad.mit.edu	36	4	38952872	38952872	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025132	exon33	c.C3615T	p.G1205G	.	.	.
ZNF721	170960	broad.mit.edu	36	4	425607	425607	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.T2649C	p.H883H	.	.	.
ZBTB49	166793	broad.mit.edu	36	4	4373470	4373470	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145291	exon8	c.C1824T	p.L608L	.	.	.
GABRG1	2565	broad.mit.edu	36	4	45755092	45755092	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173536	exon7	c.A815T	p.Y272F	.	.	.
CORIN	10699	broad.mit.edu	36	4	47460332	47460332	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon4	c.G438C	p.Q146H	.	.	.
PDGFRA	5156	broad.mit.edu	36	4	54851300	54851300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006206	exon22	c.G2944A	p.V982M	.	.	.
EVC	2121	broad.mit.edu	36	4	5846284	5846284	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153717	exon13	c.C1825T	p.R609W	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62281666	62281666	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon5	c.A994G	p.N332D	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6911129	6911129	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014743	exon6	c.G513A	p.V171V	.	.	.
CSN2	1447	broad.mit.edu	36	4	70857989	70857989	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001891	exon5	c.G267T	p.V89V	.	.	.
HTN1	3346	broad.mit.edu	36	4	70955853	70955853	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002159	exon5	c.C152A	p.S51X	.	.	.
RUFY3	22902	broad.mit.edu	36	4	71873422	71873422	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014961	exon11	c.G1107T	p.M369I	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73380252	73380252	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon19	c.A2706C	p.Q902H	.	.	.
NAAA	27163	broad.mit.edu	36	4	77080265	77080265	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042402	exon2	c.T284C	p.F95S	.	.	.
CNOT6L	246175	broad.mit.edu	36	4	78871604	78871604	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144571	exon9	c.G985A	p.A329T	.	.	.
BMP3	651	broad.mit.edu	36	4	82186450	82186450	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001201	exon2	c.A851T	p.E284V	.	.	.
COPS4	51138	broad.mit.edu	36	4	84175465	84175465	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016129	exon1	c.C64A	p.L22M	.	.	.
GAK	2580	broad.mit.edu	36	4	843435	843435	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005255	exon24	c.A3242G	p.D1081G	.	.	.
PTPN13	5783	broad.mit.edu	36	4	87924661	87924661	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080684	exon35	c.A5471G	p.N1824S	.	.	.
HSD17B13	345275	broad.mit.edu	36	4	88457322	88457322	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136230	exon2	c.C288A	p.T96T	.	.	.
HERC3	8916	broad.mit.edu	36	4	89810084	89810084	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014606	exon15	c.C1684A	p.L562I	.	.	.
FAM190A	401145	broad.mit.edu	36	4	91448464	91448464	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145065	exon2	c.G6A	p.G2G	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9632051	9632051	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020041	exon1	c.T101G	p.L34R	.	.	.
WDR1	9948	broad.mit.edu	36	4	9693768	9693768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017491	exon10	c.C1172T	p.T391I	.	.	.
TSPAN5	10098	broad.mit.edu	36	4	99618900	99618900	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005723	exon5	c.C535T	p.R179X	.	.	.
ARSJ	79642	broad.mit.edu	36	4	115042943	115042943	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024590	exon2	c.1736delA	p.K579fs	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457897	126457897	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.881delC	p.T294fs	.	.	.
DCLK2	166614	broad.mit.edu	36	4	151396782	151396782	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040260	exon16	c.2234delC	p.T745fs	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155438769	155438769	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon18	c.4782delC	p.P1594fs	.	.	.
FAT1	2195	broad.mit.edu	36	4	187775935	187775935	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005245	exon10	c.8799delA	p.Q2933fs	.	.	.
THAP9	79725	broad.mit.edu	36	4	84057406	84057406	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024672	exon5	c.1017delT	p.Y339fs	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85929952	85929952	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon22	c.3620delA	p.N1207fs	.	.	.
ITK	3702	broad.mit.edu	36	5	156604011	156604012	+	Frame_Shift_Ins	INS	-	TG	TG	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	TG	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005546	exon13	c.1394_1395insTG	p.D465fs	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31529078	31529079	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon12	c.1835_1836insC	p.L612fs	.	.	.
RAD1	5810	broad.mit.edu	36	5	34949350	34949351	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002853	exon3	c.289_290insT	p.G97fs	.	.	.
FER	2241	broad.mit.edu	36	5	108235087	108235087	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005246	exon7	c.T788C	p.F263S	.	.	.
CTNND2	1501	broad.mit.edu	36	5	11075928	11075928	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001332	exon17	c.C2952T	p.A984A	.	.	.
CAMK4	814	broad.mit.edu	36	5	110812799	110812799	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001744	exon7	c.C624T	p.C208C	.	.	.
TSSK1B	83942	broad.mit.edu	36	5	112798039	112798039	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032028	exon1	c.G397A	p.V133I	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112929547	112929547	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon21	c.T2774G	p.L925R	.	.	.
SEMA6A	57556	broad.mit.edu	36	5	115810296	115810296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020796	exon19	c.G3005A	p.R1002H	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126804350	126804350	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032446	exon19	c.G2254T	p.G752X	.	.	.
FBN2	2201	broad.mit.edu	36	5	127901117	127901117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon1	c.G79A	p.A27T	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128348898	128348898	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017372	exon2	c.T655C	p.C219R	.	.	.
ACSL6	23305	broad.mit.edu	36	5	131354544	131354544	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009185	exon3	c.C286T	p.R96W	.	.	.
PHF15	23338	broad.mit.edu	36	5	133923520	133923520	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015288	exon5	c.A413G	p.D138G	.	.	.
FBXL21	26223	broad.mit.edu	36	5	135304234	135304234	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012159	exon7	c.A647G	p.H216R	.	.	.
FAM13B	51306	broad.mit.edu	36	5	137374685	137374685	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016603	exon6	c.A601C	p.M201L	.	.	.
WNT8A	7478	broad.mit.edu	36	5	137452606	137452606	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058244	exon5	c.G459A	p.G153G	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13772090	13772090	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon72	c.G12400T	p.A4134S	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137919696	137919696	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004134	exon17	c.T1969C	p.S657P	.	.	.
NRG2	9542	broad.mit.edu	36	5	139402391	139402391	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013981	exon1	c.C448T	p.R150X	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13972407	13972407	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon7	c.G853A	p.A285T	.	.	.
TMCO6	55374	broad.mit.edu	36	5	140001507	140001507	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018502	exon3	c.G272A	p.R91H	.	.	.
NDUFA2	4695	broad.mit.edu	36	5	140007050	140007050	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001185012	exon2	c.G183A	p.V61V	.	.	.
PCDHA3	56145	broad.mit.edu	36	5	140161372	140161372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031497	exon1	c.G406A	p.A136T	.	.	.
PCDHA5	56143	broad.mit.edu	36	5	140183397	140183397	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018908	exon1	c.G1853A	p.R618H	.	.	.
PCDHA6	56142	broad.mit.edu	36	5	140188015	140188015	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018909	exon1	c.T155C	p.L52P	.	.	.
PCDHA7	56141	broad.mit.edu	36	5	140194292	140194292	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018910	exon1	c.G140A	p.R47H	.	.	.
PCDHAC2	56134	broad.mit.edu	36	5	140328742	140328742	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018899	exon1	c.C2207T	p.A736V	.	.	.
PCDHB2	56133	broad.mit.edu	36	5	140455243	140455243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018936	exon1	c.C685T	p.L229L	.	.	.
PCDHB5	26167	broad.mit.edu	36	5	140497347	140497347	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015669	exon1	c.G2147A	p.S716N	.	.	.
PCDHB16	57717	broad.mit.edu	36	5	140544270	140544270	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020957	exon1	c.C1952T	p.P651L	.	.	.
PCDHB14	56122	broad.mit.edu	36	5	140584642	140584642	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018934	exon1	c.C1381A	p.R461S	.	.	.
PCDHB15	56121	broad.mit.edu	36	5	140606938	140606938	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018935	exon1	c.C1608T	p.R536R	.	.	.
PCDHGA4	56111	broad.mit.edu	36	5	140717241	140717241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018917	exon1	c.C2290T	p.R764W	.	.	.
PCDHGA5	56110	broad.mit.edu	36	5	140726239	140726239	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032054	exon1	c.C2158T	p.H720Y	.	.	.
PCDHGB5	56101	broad.mit.edu	36	5	140758951	140758951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032099	exon1	c.C1073T	p.P358L	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140791225	140791225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032094	exon1	c.G715A	p.A239T	.	.	.
PCDHGC4	56098	broad.mit.edu	36	5	140847005	140847005	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032406	exon1	c.C2081T	p.A694V	.	.	.
HDAC3	8841	broad.mit.edu	36	5	140985008	140985008	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003883	exon14	c.A1168G	p.T390A	.	.	.
RBM27	54439	broad.mit.edu	36	5	145597131	145597131	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018989	exon8	c.G1222A	p.V408M	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145814894	145814894	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040006	exon2	c.C142T	p.R48X	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147021141	147021141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon3	c.C190T	p.R64C	.	.	.
SPINK5	11005	broad.mit.edu	36	5	147460267	147460267	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127699	exon13	c.G1150C	p.E384Q	.	.	.
PDE6A	5145	broad.mit.edu	36	5	149293707	149293707	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000440	exon3	c.C696A	p.N232K	.	.	.
ANXA6	309	broad.mit.edu	36	5	150482757	150482757	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001155	exon16	c.G1147A	p.E383K	.	.	.
FAT2	2196	broad.mit.edu	36	5	150897697	150897697	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon11	c.C9043A	p.L3015I	.	.	.
G3BP1	10146	broad.mit.edu	36	5	151163783	151163783	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005754	exon12	c.C1339T	p.R447C	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153654611	153654611	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198321	exon2	c.G202T	p.G68W	.	.	.
GALNT10	55568	broad.mit.edu	36	5	153769309	153769309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198321	exon9	c.G1180A	p.A394T	.	.	.
KIF4B	285643	broad.mit.edu	36	5	154374822	154374822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099293	exon1	c.C1210T	p.R404C	.	.	.
HAVCR2	84868	broad.mit.edu	36	5	156466389	156466389	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032782	exon2	c.A221G	p.D74G	.	.	.
CCNJL	79616	broad.mit.edu	36	5	159613319	159613319	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024565	exon7	c.G952A	p.G318S	.	.	.
CCDC99	54908	broad.mit.edu	36	5	168953983	168953983	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017785	exon6	c.G689A	p.R230H	.	.	.
RGS14	10636	broad.mit.edu	36	5	176727105	176727105	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006480	exon6	c.G568T	p.G190X	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178438940	178438940	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014594	exon5	c.C901T	p.R301X	.	.	.
ZNF354C	30832	broad.mit.edu	36	5	178439029	178439029	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014594	exon5	c.C990T	p.C330C	.	.	.
TBC1D9B	23061	broad.mit.edu	36	5	179264353	179264353	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198868	exon2	c.C184A	p.L62M	.	.	.
CDH18	1016	broad.mit.edu	36	5	19519249	19519249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167667	exon12	c.C1691T	p.A564V	.	.	.
PRDM9	56979	broad.mit.edu	36	5	23563514	23563514	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020227	exon11	c.C2560T	p.H854Y	.	.	.
CDH10	1008	broad.mit.edu	36	5	24524003	24524003	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006727	exon12	c.T1893C	p.F631F	.	.	.
DROSHA	29102	broad.mit.edu	36	5	31507928	31507928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013235	exon16	c.C2240T	p.T747M	.	.	.
TARS	6897	broad.mit.edu	36	5	33489213	33489213	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152295	exon4	c.G392A	p.R131H	.	.	.
RXFP3	51289	broad.mit.edu	36	5	33972939	33972939	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016568	exon1	c.C337T	p.R113C	.	.	.
NIPBL	25836	broad.mit.edu	36	5	37100527	37100527	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133433	exon47	c.A8191C	p.T2731P	.	.	.
RICTOR	253260	broad.mit.edu	36	5	38980798	38980798	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152756	exon35	c.G4763T	p.S1588I	.	.	.
OXCT1	5019	broad.mit.edu	36	5	41841527	41841527	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000436	exon9	c.G854A	p.R285Q	.	.	.
FST	10468	broad.mit.edu	36	5	52812420	52812420	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013409	exon1	c.G42C	p.L14L	.	.	.
ARL15	54622	broad.mit.edu	36	5	53444965	53444965	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019087	exon4	c.T286C	p.Y96H	.	.	.
CDC20B	166979	broad.mit.edu	36	5	54456397	54456397	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170402	exon9	c.G1206A	p.T402T	.	.	.
GPBP1	65056	broad.mit.edu	36	5	56562714	56562714	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022913	exon5	c.C220T	p.R74C	.	.	.
ACTBL2	345651	broad.mit.edu	36	5	56813441	56813441	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017992	exon1	c.T851C	p.M284T	.	.	.
C5orf43	643155	broad.mit.edu	36	5	60491616	60491616	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048249	exon3	c.T140C	p.M47T	.	.	.
CARTPT	9607	broad.mit.edu	36	5	71051505	71051505	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004291	exon2	c.C202T	p.R68C	.	.	.
PTCD2	79810	broad.mit.edu	36	5	71662935	71662935	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024754	exon4	c.G445T	p.A149S	.	.	.
ZNF366	167465	broad.mit.edu	36	5	71775442	71775442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152625	exon5	c.G2132A	p.G711D	.	.	.
TPPP	11076	broad.mit.edu	36	5	719222	719222	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007030	exon3	c.A328C	p.T110P	.	.	.
HEXB	3074	broad.mit.edu	36	5	74045130	74045130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000521	exon7	c.G815A	p.R272H	.	.	.
MTRR	4552	broad.mit.edu	36	5	7942311	7942311	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002454	exon9	c.T1250C	p.V417A	.	.	.
TMEM161B	153396	broad.mit.edu	36	5	87537393	87537393	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153354	exon8	c.T794A	p.I265N	.	.	.
TTC37	9652	broad.mit.edu	36	5	94903363	94903363	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014639	exon6	c.T238G	p.L80V	.	.	.
ELL2	22936	broad.mit.edu	36	5	95259702	95259702	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012081	exon8	c.G1523C	p.G508A	.	.	.
CHD1	1105	broad.mit.edu	36	5	98240065	98240065	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001270	exon23	c.G3335A	p.R1112H	.	.	.
SLCO6A1	133482	broad.mit.edu	36	5	101862380	101862380	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173488	exon1	c.68delA	p.E23fs	.	.	.
APC	324	broad.mit.edu	36	5	112201730	112201730	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127511	exon14	c.2486delA	p.E829fs	.	.	.
SLC6A18	348932	broad.mit.edu	36	5	1296834	1296834	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182632	exon9	c.1296delG	p.V432fs	.	.	.
FAM105A	54491	broad.mit.edu	36	5	14661915	14661915	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019018	exon7	c.686delT	p.L229fs	.	.	.
RMND5B	64777	broad.mit.edu	36	5	177497748	177497749	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022762	exon3	c.22_23del	p.8_8del	.	.	.
FLT4	2324	broad.mit.edu	36	5	179991354	179991354	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182925	exon2	c.89delC	p.P30fs	.	.	.
CWC27	10283	broad.mit.edu	36	5	64217115	64217115	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005869	exon11	c.1028delA	p.E343fs	.	.	.
TBCA	6902	broad.mit.edu	36	5	77039864	77039864	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004607	exon2	c.118delA	p.M40X	.	.	.
PAPD4	167153	broad.mit.edu	36	5	78954832	78954832	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114394	exon4	c.229delA	p.R77fs	.	.	.
MBOAT1	154141	broad.mit.edu	36	6	20260865	20260866	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080480	exon2	c.214_215insT	p.G72fs	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51727660	51727661	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138694	exon56	c.8678_8679insC	p.H2893fs	.	.	.
PHF3	23469	broad.mit.edu	36	6	64466375	64466376	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon7	c.2903_2904insT	p.S968fs	.	.	.
SIM1	6492	broad.mit.edu	36	6	101002760	101002760	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon7	c.G833A	p.R278H	.	.	.
ASCC3	10973	broad.mit.edu	36	6	101354958	101354958	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006828	exon6	c.G1066T	p.E356X	.	.	.
GCNT2	2651	broad.mit.edu	36	6	10637692	10637692	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145649	exon3	c.A562G	p.I188V	.	.	.
PRDM1	639	broad.mit.edu	36	6	106660027	106660027	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198	exon5	c.C1299T	p.G433G	.	.	.
GPR6	2830	broad.mit.edu	36	6	110407674	110407675	+	Missense_Mutation	DNP	GG	AC	AC	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	GG	GG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005284	exon1	c.666_667AC	.	.	.	.
ERVFRDE1	405754	broad.mit.edu	36	6	11213436	11213436	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207582	exon2	c.C94T	p.L32F	.	.	.
RWDD1	51389	broad.mit.edu	36	6	117008198	117008198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015952	exon2	c.G121A	p.A41T	.	.	.
GOPC	57120	broad.mit.edu	36	6	117997461	117997461	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020399	exon7	c.G1044T	p.K348N	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810408	121810408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000165	exon2	c.G716A	p.R239Q	.	.	.
GJA1	2697	broad.mit.edu	36	6	121810781	121810781	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000165	exon2	c.T1089G	p.P363P	.	.	.
HEY2	23493	broad.mit.edu	36	6	126121967	126121967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012259	exon5	c.G340A	p.A114T	.	.	.
KIAA0408	9729	broad.mit.edu	36	6	127809616	127809616	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014702	exon5	c.A1541G	p.K514R	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838333	127838333	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon6	c.G2531A	p.R844H	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127878448	127878448	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon2	c.G1005A	p.A335A	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128581871	128581871	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon6	c.G757A	p.A253T	.	.	.
TAAR5	9038	broad.mit.edu	36	6	132952477	132952477	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003967	exon1	c.G42A	p.A14A	.	.	.
VNN1	8876	broad.mit.edu	36	6	133055353	133055353	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004666	exon5	c.G890T	p.G297V	.	.	.
EYA4	2070	broad.mit.edu	36	6	133878265	133878265	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172103	exon16	c.A1546G	p.R516G	.	.	.
GFOD1	54438	broad.mit.edu	36	6	13473092	13473092	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018988	exon2	c.C1035T	p.C345C	.	.	.
GPR126	57211	broad.mit.edu	36	6	142733531	142733531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032394	exon4	c.G977A	p.S326N	.	.	.
PEX3	8504	broad.mit.edu	36	6	143835012	143835012	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003630	exon8	c.T601C	p.S201P	.	.	.
UTRN	7402	broad.mit.edu	36	6	145114730	145114730	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007124	exon55	c.A8304G	p.L2768L	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146306536	146306536	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon9	c.T1674C	p.D558D	.	.	.
AKAP12	9590	broad.mit.edu	36	6	151714886	151714886	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005100	exon4	c.G3667T	p.A1223S	.	.	.
RMND1	55005	broad.mit.edu	36	6	151785384	151785384	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017909	exon8	c.T987C	p.I329I	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151956106	151956106	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025059	exon8	c.A1465C	p.K489Q	.	.	.
ESR1	2099	broad.mit.edu	36	6	152170894	152170894	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122740	exon2	c.T154C	p.Y52H	.	.	.
TIAM2	26230	broad.mit.edu	36	6	155492405	155492405	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012454	exon3	c.T356A	p.V119D	.	.	.
NOX3	50508	broad.mit.edu	36	6	155799286	155799286	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015718	exon7	c.G756T	p.V252V	.	.	.
JARID2	3720	broad.mit.edu	36	6	15628297	15628297	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004973	exon18	c.G3577A	p.V1193I	.	.	.
TULP4	56995	broad.mit.edu	36	6	158843858	158843858	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020245	exon13	c.G3175A	p.A1059T	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159556070	159556070	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon5	c.G566A	p.R189H	.	.	.
FNDC1	84624	broad.mit.edu	36	6	159574296	159574296	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032532	exon11	c.G2762A	p.R921Q	.	.	.
IGF2R	3482	broad.mit.edu	36	6	160368236	160368236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000876	exon6	c.C676T	p.R226W	.	.	.
LPA	4018	broad.mit.edu	36	6	160926068	160926068	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005577	exon27	c.C4289T	p.A1430V	.	.	.
MAP3K4	4216	broad.mit.edu	36	6	161434043	161434043	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006724	exon14	c.G3313A	p.A1105T	.	.	.
QKI	9444	broad.mit.edu	36	6	163756308	163756308	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206855	exon1	c.G93T	p.L31L	.	.	.
GMPR	2766	broad.mit.edu	36	6	16403303	16403303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006877	exon9	c.G945A	p.T315T	.	.	.
ATXN1	6310	broad.mit.edu	36	6	16435487	16435487	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000332	exon8	c.G1034T	p.G345V	.	.	.
CAP2	10486	broad.mit.edu	36	6	17651309	17651309	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006366	exon11	c.G1165A	p.V389M	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17889465	17889465	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022113	exon30	c.C3591A	p.S1197S	.	.	.
DEK	7913	broad.mit.edu	36	6	18344712	18344712	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003472	exon9	c.C997T	p.L333L	.	.	.
KIAA0319	9856	broad.mit.edu	36	6	24664914	24664914	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168377	exon18	c.C2757A	p.G919G	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25603364	25603364	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017640	exon16	c.T1267G	p.S423A	.	.	.
MAS1L	116511	broad.mit.edu	36	6	29562781	29562781	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052967	exon1	c.T878C	p.V293A	.	.	.
TRIM26	7726	broad.mit.edu	36	6	30262054	30262054	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003449	exon10	c.G1198A	p.E400K	.	.	.
VARS2	57176	broad.mit.edu	36	6	30997373	30997373	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167733	exon17	c.G1241A	p.R414Q	.	.	.
LY6G5C	80741	broad.mit.edu	36	6	31752776	31752776	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025262	exon3	c.C390A	p.F130L	.	.	.
TNXB	7148	broad.mit.edu	36	6	32128455	32128455	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon26	c.G9079A	p.V3027M	.	.	.
TNXB	7148	broad.mit.edu	36	6	32144697	32144697	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon16	c.G5782T	p.G1928X	.	.	.
TNXB	7148	broad.mit.edu	36	6	32171775	32171775	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon3	c.C1833T	p.Y611Y	.	.	.
GPSM3	63940	broad.mit.edu	36	6	32267130	32267130	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022107	exon8	c.C474G	p.H158Q	.	.	.
BTNL2	56244	broad.mit.edu	36	6	32480905	32480905	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019602	exon2	c.A216G	p.T72T	.	.	.
FGD2	221472	broad.mit.edu	36	6	37091605	37091605	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173558	exon9	c.C1113T	p.A371A	.	.	.
C6orf146	222826	broad.mit.edu	36	6	4015050	4015050	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173563	exon7	c.C406T	p.Q136X	.	.	.
GUCA1B	2979	broad.mit.edu	36	6	42260553	42260553	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002098	exon4	c.G581T	p.R194I	.	.	.
PRPH2	5961	broad.mit.edu	36	6	42798046	42798046	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000322	exon1	c.C5T	p.A2V	.	.	.
RRP36	88745	broad.mit.edu	36	6	43103103	43103103	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033112	exon6	c.C553T	p.R185X	.	.	.
PTK7	5754	broad.mit.edu	36	6	43205506	43205506	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152880	exon3	c.C431T	p.T144I	.	.	.
CUL9	23113	broad.mit.edu	36	6	43296297	43296297	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon32	c.G6405A	p.S2135S	.	.	.
ABCC10	89845	broad.mit.edu	36	6	43520579	43520579	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198934	exon13	c.C2765T	p.A922V	.	.	.
XPO5	57510	broad.mit.edu	36	6	43646629	43646629	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020750	exon4	c.G381A	p.E127E	.	.	.
GPR110	266977	broad.mit.edu	36	6	47085606	47085606	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153840	exon11	c.G1524A	p.T508T	.	.	.
CD2AP	23607	broad.mit.edu	36	6	47675045	47675045	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012120	exon13	c.G1324A	p.V442I	.	.	.
GPR115	221393	broad.mit.edu	36	6	47790635	47790635	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153838	exon6	c.G1695A	p.P565P	.	.	.
OPN5	221391	broad.mit.edu	36	6	47871025	47871025	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181744	exon4	c.G523A	p.V175I	.	.	.
C6orf138	442213	broad.mit.edu	36	6	47954942	47954942	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013732	exon3	c.A1597T	p.S533C	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52035382	52035382	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon14	c.G1012A	p.V338I	.	.	.
LGSN	51557	broad.mit.edu	36	6	64048312	64048312	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016571	exon4	c.G1103A	p.R368H	.	.	.
PHF3	23469	broad.mit.edu	36	6	64480912	64480912	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon15	c.T5469C	p.F1823F	.	.	.
BAI3	577	broad.mit.edu	36	6	69814920	69814920	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001704	exon14	c.A2230C	p.S744R	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73000264	73000264	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168410	exon2	c.G123A	p.S41S	.	.	.
CD109	135228	broad.mit.edu	36	6	74496833	74496833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133493	exon4	c.G322A	p.G108R	.	.	.
COL12A1	1303	broad.mit.edu	36	6	75890503	75890503	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004370	exon42	c.G6752A	p.R2251H	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83896809	83896809	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon17	c.A2590G	p.I864V	.	.	.
SRSF12	135295	broad.mit.edu	36	6	89884268	89884268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_080743	exon1	c.G58A	p.A20T	.	.	.
MDN1	23195	broad.mit.edu	36	6	90449686	90449686	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon73	c.A11988C	p.E3996D	.	.	.
MDN1	23195	broad.mit.edu	36	6	90561058	90561058	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon3	c.G513A	p.V171V	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90635033	90635033	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon8	c.A5303C	p.Q1768P	.	.	.
SFRS18	25957	broad.mit.edu	36	6	99960646	99960646	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015491	exon7	c.G984T	p.E328D	.	.	.
USP45	85015	broad.mit.edu	36	6	100000429	100000429	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080481	exon14	c.1940delA	p.N647fs	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801378	111801378	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon13	c.4873delT	p.S1625fs	.	.	.
TRDN	10345	broad.mit.edu	36	6	123636194	123636194	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006073	exon28	c.1611delA	p.K537fs	.	.	.
PTPRK	5796	broad.mit.edu	36	6	128359782	128359782	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002844	exon17	c.2724delA	p.K908fs	.	.	.
TUBB	203068	broad.mit.edu	36	6	30799239	30799239	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178014	exon4	c.421delG	p.G141fs	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38962753	38962753	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001371	exon55	c.7817delT	p.I2606fs	.	.	.
ME1	4199	broad.mit.edu	36	6	84081778	84081778	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002395	exon6	c.674delT	p.L225fs	.	.	.
CASP8AP2	9994	broad.mit.edu	36	6	90635151	90635151	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137667	exon8	c.5421delA	p.V1807fs	.	.	.
DAGLB	221955	broad.mit.edu	36	7	6416421	6416422	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139179	exon14	c.1685_1686insG	p.E562fs	.	.	.
MOSPD3	64598	broad.mit.edu	36	7	100050513	100050513	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040098	exon5	c.C599T	p.P200L	.	.	.
SLC12A9	56996	broad.mit.edu	36	7	100295536	100295536	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020246	exon8	c.G1071A	p.A357A	.	.	.
SRRT	51593	broad.mit.edu	36	7	100320776	100320776	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128852	exon10	c.C1163T	p.A388V	.	.	.
AP1S1	1174	broad.mit.edu	36	7	100586749	100586749	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001283	exon2	c.G158T	p.R53M	.	.	.
CUX1	1523	broad.mit.edu	36	7	101628845	101628845	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181552	exon16	c.G1938A	p.P646P	.	.	.
POLR2J3	548644	broad.mit.edu	36	7	101995574	101995574	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097615	exon3	c.G304C	p.E102Q	.	.	.
RELN	5649	broad.mit.edu	36	7	103063261	103063261	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon19	c.A2312G	p.Q771R	.	.	.
MLL5	55904	broad.mit.edu	36	7	104536749	104536749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182931	exon23	c.G3593A	p.G1198D	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106295570	106295570	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.T328C	p.Y110H	.	.	.
PRKAR2B	5577	broad.mit.edu	36	7	106584909	106584909	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002736	exon10	c.C1027T	p.R343X	.	.	.
ZNF277	11179	broad.mit.edu	36	7	111765053	111765053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021994	exon9	c.C902A	p.S301Y	.	.	.
FOXP2	93986	broad.mit.edu	36	7	114079559	114079559	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148899	exon8	c.T1160C	p.V387A	.	.	.
CTTNBP2	83992	broad.mit.edu	36	7	117219139	117219139	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033427	exon4	c.A1347G	p.R449R	.	.	.
RBM28	55131	broad.mit.edu	36	7	127760583	127760583	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166135	exon5	c.T593C	p.I198T	.	.	.
ZC3HC1	51530	broad.mit.edu	36	7	129451425	129451425	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016478	exon7	c.C934T	p.P312S	.	.	.
PLXNA4	91584	broad.mit.edu	36	7	131533922	131533922	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020911	exon13	c.C2600T	p.T867I	.	.	.
WDR91	29062	broad.mit.edu	36	7	134521490	134521490	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014149	exon15	c.A2197G	p.M733V	.	.	.
WDR91	29062	broad.mit.edu	36	7	134533386	134533386	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014149	exon7	c.G949A	p.G317R	.	.	.
NUP205	23165	broad.mit.edu	36	7	134973912	134973912	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015135	exon38	c.C5333G	p.A1778G	.	.	.
KIAA1549	57670	broad.mit.edu	36	7	138252866	138252866	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164665	exon2	c.G2046A	p.Q682Q	.	.	.
HIPK2	28996	broad.mit.edu	36	7	138966566	138966566	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022740	exon4	c.G1232A	p.R411Q	.	.	.
RAB19	401409	broad.mit.edu	36	7	139758215	139758215	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008749	exon3	c.G274A	p.A92T	.	.	.
MKRN1	23608	broad.mit.edu	36	7	139806042	139806042	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145125	exon3	c.G478T	p.G160X	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
KEL	3792	broad.mit.edu	36	7	142361410	142361410	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000420	exon8	c.A907C	p.T303P	.	.	.
OR2A5	393046	broad.mit.edu	36	7	143378702	143378702	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012365	exon1	c.T275A	p.I92N	.	.	.
C7orf33	202865	broad.mit.edu	36	7	147942142	147942142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145304	exon2	c.G280A	p.A94T	.	.	.
SSPO	23145	broad.mit.edu	36	7	149114236	149114236	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198455	exon21	c.G3375T	p.L1125L	.	.	.
GIMAP8	155038	broad.mit.edu	36	7	149805568	149805568	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175571	exon5	c.C1765T	p.R589C	.	.	.
GIMAP4	55303	broad.mit.edu	36	7	149900653	149900653	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018326	exon3	c.G562A	p.A188T	.	.	.
ABCB8	11194	broad.mit.edu	36	7	150368602	150368602	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007188	exon11	c.G1336A	p.V446I	.	.	.
NUB1	51667	broad.mit.edu	36	7	150677244	150677244	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016118	exon3	c.A270G	p.P90P	.	.	.
ITGB8	3696	broad.mit.edu	36	7	20385316	20385316	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002214	exon4	c.T506G	p.V169G	.	.	.
FAM126A	84668	broad.mit.edu	36	7	22984456	22984456	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032581	exon4	c.G290A	p.S97N	.	.	.
KLHL7	55975	broad.mit.edu	36	7	23129926	23129926	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031710	exon2	c.G126A	p.T42T	.	.	.
MPP6	51678	broad.mit.edu	36	7	24647880	24647880	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016447	exon4	c.T138C	p.D46D	.	.	.
NFE2L3	9603	broad.mit.edu	36	7	26184098	26184098	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004289	exon2	c.T581C	p.V194A	.	.	.
HOXA1	3198	broad.mit.edu	36	7	27100854	27100854	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005522	exon2	c.G738A	p.K246K	.	.	.
AMZ1	155185	broad.mit.edu	36	7	2714822	2714822	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133463	exon4	c.C547A	p.L183M	.	.	.
NOD1	10392	broad.mit.edu	36	7	30458499	30458499	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006092	exon6	c.C1059A	p.S353S	.	.	.
PDE1C	5137	broad.mit.edu	36	7	32176093	32176093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001191058	exon3	c.G137A	p.R46Q	.	.	.
AMPH	273	broad.mit.edu	36	7	38471627	38471627	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139316	exon9	c.C714T	p.H238H	.	.	.
GLI3	2737	broad.mit.edu	36	7	41970588	41970588	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000168	exon15	c.C4608T	p.S1536S	.	.	.
SDK1	221935	broad.mit.edu	36	7	4243918	4243918	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon42	c.A6106G	p.K2036E	.	.	.
STK17A	9263	broad.mit.edu	36	7	43629857	43629857	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004760	exon6	c.C765T	p.V255V	.	.	.
PGAM2	5224	broad.mit.edu	36	7	44071124	44071124	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000290	exon2	c.G427A	p.A143T	.	.	.
CAMK2B	816	broad.mit.edu	36	7	44248723	44248723	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172078	exon9	c.G657A	p.Q219Q	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44545147	44545147	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013389	exon2	c.G1374A	p.S458S	.	.	.
OGDH	4967	broad.mit.edu	36	7	44713457	44713457	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002541	exon21	c.G2741A	p.R914Q	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4765367	4765367	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037165	exon6	c.C1404T	p.S468S	.	.	.
FOXK1	221937	broad.mit.edu	36	7	4767383	4767383	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037165	exon8	c.G1859A	p.R620Q	.	.	.
VWC2	375567	broad.mit.edu	36	7	49785599	49785599	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198570	exon2	c.G22A	p.A8T	.	.	.
IKZF1	10320	broad.mit.edu	36	7	50411854	50411854	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006060	exon4	c.G290T	p.R97M	.	.	.
FBXL18	80028	broad.mit.edu	36	7	5507959	5507959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024963	exon3	c.G467A	p.G156D	.	.	.
CYTH3	9265	broad.mit.edu	36	7	6177100	6177100	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004227	exon8	c.G597A	p.M199I	.	.	.
C7orf70	84792	broad.mit.edu	36	7	6337104	6337104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037163	exon2	c.G207A	p.P69P	.	.	.
ZNF680	340252	broad.mit.edu	36	7	63619004	63619004	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178558	exon4	c.A1563G	p.E521E	.	.	.
KCTD7	154881	broad.mit.edu	36	7	65741620	65741620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167961	exon4	c.G836A	p.R279H	.	.	.
AUTS2	26053	broad.mit.edu	36	7	69866145	69866145	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015570	exon7	c.T1096C	p.S366P	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72518605	72518605	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032408	exon10	c.G2929A	p.V977I	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72530605	72530605	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032408	exon7	c.G1122A	p.S374S	.	.	.
LAT2	7462	broad.mit.edu	36	7	73272256	73272256	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032463	exon6	c.C209T	p.A70V	.	.	.
NCF1	653361	broad.mit.edu	36	7	73831670	73831670	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000265	exon4	c.C361T	p.R121C	.	.	.
CCDC146	57639	broad.mit.edu	36	7	76754149	76754149	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020879	exon16	c.C2247T	p.T749T	.	.	.
C7orf63	79846	broad.mit.edu	36	7	89712702	89712702	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160138	exon1	c.G28A	p.A10T	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91468707	91468707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147185	exon8	c.G1540A	p.E514K	.	.	.
ARPC1A	10552	broad.mit.edu	36	7	98795107	98795107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190996	exon8	c.C751A	p.H251N	.	.	.
ZNF655	79027	broad.mit.edu	36	7	99008180	99008180	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083956	exon4	c.C618A	p.A206A	.	.	.
CYP2W1	54905	broad.mit.edu	36	7	992816	992816	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017781	exon5	c.C676A	p.L226M	.	.	.
COPS6	10980	broad.mit.edu	36	7	99524591	99524591	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006833	exon1	c.C42T	p.T14T	.	.	.
AGFG2	3268	broad.mit.edu	36	7	99998214	99998214	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006076	exon8	c.G1060A	p.G354S	.	.	.
PCOLCE	5118	broad.mit.edu	36	7	100040658	100040658	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002593	exon4	c.472delT	p.F158fs	.	.	.
SLC26A5	375611	broad.mit.edu	36	7	102848544	102848544	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206884	exon4	c.169delA	p.I57X	.	.	.
AASS	10157	broad.mit.edu	36	7	121513410	121513410	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon19	c.2076delT	p.F692fs	.	.	.
NOBOX	135935	broad.mit.edu	36	7	143727123	143727123	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080413	exon6	c.971delC	p.P324fs	.	.	.
CHPF2	54480	broad.mit.edu	36	7	150563085	150563086	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019015	exon2	c.282_283del	p.94_95del	.	.	.
GALNTL5	168391	broad.mit.edu	36	7	151315256	151315257	+	Frame_Shift_Del	DEL	GG	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	GG	GG	GG	-	GG	GG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145292	exon5	c.615_616del	p.205_206del	.	.	.
GPR141	353345	broad.mit.edu	36	7	37747205	37747205	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181791	exon1	c.685delT	p.F229fs	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47911298	47911298	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon11	c.1672delA	p.R558fs	.	.	.
MAGI2	9863	broad.mit.edu	36	7	77594589	77594589	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012301	exon19	c.3284delC	p.P1095fs	.	.	.
AKAP9	10142	broad.mit.edu	36	7	91441021	91441021	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_147185	exon2	c.109delA	p.K37fs	.	.	.
TMEM55A	55529	broad.mit.edu	36	8	92090147	92090148	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018710	exon5	c.539_540insA	p.I180fs	.	.	.
CPSF1	29894	broad.mit.edu	36	8	145592766	145592767	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
GRHL2	79977	broad.mit.edu	36	8	102701089	102701089	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024915	exon9	c.C1245G	p.V415V	.	.	.
PINX1	54984	broad.mit.edu	36	8	10726604	10726604	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017884	exon4	c.C282T	p.C94C	.	.	.
RSPO2	340419	broad.mit.edu	36	8	109163961	109163961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178565	exon2	c.C82T	p.R28C	.	.	.
MTMR9	66036	broad.mit.edu	36	8	11201233	11201233	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015458	exon5	c.T716C	p.L239P	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113771397	113771397	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon14	c.C2031T	p.G677G	.	.	.
BLK	640	broad.mit.edu	36	8	11443973	11443973	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001715	exon5	c.G301A	p.V101I	.	.	.
TRPS1	7227	broad.mit.edu	36	8	116495939	116495939	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014112	exon7	c.C3373T	p.R1125W	.	.	.
CTSB	1508	broad.mit.edu	36	8	11745798	11745798	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147781	exon5	c.T313C	p.C105R	.	.	.
TNFRSF11B	4982	broad.mit.edu	36	8	120006003	120006003	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002546	exon5	c.C997T	p.R333X	.	.	.
COL14A1	7373	broad.mit.edu	36	8	121391458	121391458	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021110	exon37	c.C4431T	p.G1477G	.	.	.
EFR3A	23167	broad.mit.edu	36	8	133035330	133035330	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015137	exon6	c.C572T	p.P191L	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133211098	133211098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon15	c.G2212A	p.A738T	.	.	.
FAM135B	51059	broad.mit.edu	36	8	139233467	139233467	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015912	exon13	c.T2433G	p.S811S	.	.	.
COL22A1	169044	broad.mit.edu	36	8	139678341	139678341	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152888	exon62	c.A4420G	p.K1474E	.	.	.
FLJ43860	389690	broad.mit.edu	36	8	142520961	142520961	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207414	exon22	c.A2920G	p.T974A	.	.	.
ARC	23237	broad.mit.edu	36	8	143691647	143691647	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015193	exon1	c.C988T	p.Q330X	.	.	.
FAM83H	286077	broad.mit.edu	36	8	144884706	144884706	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198488	exon2	c.A35G	p.D12G	.	.	.
DGAT1	8694	broad.mit.edu	36	8	145512031	145512031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012079	exon12	c.G965A	p.R322H	.	.	.
MSR1	4481	broad.mit.edu	36	8	16070464	16070464	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138716	exon4	c.A504T	p.G168G	.	.	.
PCM1	5108	broad.mit.edu	36	8	17868954	17868954	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006197	exon21	c.C3407T	p.A1136V	.	.	.
MYOM2	9172	broad.mit.edu	36	8	2014347	2014347	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003970	exon12	c.C1388T	p.A463V	.	.	.
PIWIL2	55124	broad.mit.edu	36	8	22196518	22196518	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018068	exon5	c.C452T	p.A151V	.	.	.
PPP3CC	5533	broad.mit.edu	36	8	22354874	22354874	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005605	exon1	c.G7A	p.G3R	.	.	.
SORBS3	10174	broad.mit.edu	36	8	22485853	22485853	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018003	exon9	c.G877C	p.E293Q	.	.	.
TNFRSF10A	8797	broad.mit.edu	36	8	23114203	23114203	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003844	exon5	c.G645T	p.M215I	.	.	.
ADAMDEC1	27299	broad.mit.edu	36	8	24312467	24312467	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145272	exon8	c.A661G	p.K221E	.	.	.
ADRA1A	148	broad.mit.edu	36	8	26778361	26778361	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033302	exon1	c.A43G	p.T15A	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27971700	27971700	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001010906	exon9	c.A1110G	p.A370A	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27981126	27981126	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon6	c.C535A	p.L179M	.	.	.
TMEM66	51669	broad.mit.edu	36	8	30051020	30051020	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016127	exon2	c.G197T	p.C66F	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36817248	36817248	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon15	c.C1628T	p.A543V	.	.	.
KCNU1	157855	broad.mit.edu	36	8	36886095	36886095	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031836	exon21	c.A2215G	p.R739G	.	.	.
DDHD2	23259	broad.mit.edu	36	8	38236779	38236779	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164232	exon17	c.G2119A	p.D707N	.	.	.
FAM110B	90362	broad.mit.edu	36	8	59221855	59221855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147189	exon5	c.G512A	p.R171H	.	.	.
PREX2	80243	broad.mit.edu	36	8	69027223	69027223	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025170	exon1	c.G40A	p.A14T	.	.	.
PREX2	80243	broad.mit.edu	36	8	69165433	69165433	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025170	exon20	c.G2179A	p.V727I	.	.	.
JPH1	56704	broad.mit.edu	36	8	75389967	75389967	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020647	exon2	c.G823A	p.A275T	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77928251	77928251	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.C6539T	p.T2180M	.	.	.
SGK223	157285	broad.mit.edu	36	8	8213336	8213336	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001080826	exon5	c.T3959C	p.V1320A	.	.	.
E2F5	1875	broad.mit.edu	36	8	86308866	86308866	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083588	exon6	c.C853T	p.Q285X	.	.	.
CNGB3	54714	broad.mit.edu	36	8	87660092	87660092	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019098	exon17	c.G2044A	p.G682S	.	.	.
OTUD6B	51633	broad.mit.edu	36	8	92160016	92160016	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016023	exon4	c.T662C	p.V221A	.	.	.
INTS8	55656	broad.mit.edu	36	8	95954855	95954855	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017864	exon22	c.G2611A	p.V871M	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97343458	97343458	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014754	exon1	c.T14C	p.V5A	.	.	.
SOX7	83595	broad.mit.edu	36	8	10621056	10621056	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031439	exon2	c.769delC	p.L257fs	.	.	.
PLEC	5339	broad.mit.edu	36	8	145072962	145072963	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201383	exon30	c.4033_4034del	p.1345_1345del	.	.	.
COMMD5	28991	broad.mit.edu	36	8	146047303	146047305	+	In_Frame_Del	DEL	GGC	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	GGC	GGC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001081004	exon2	c.223_225del	p.75_75del	.	.	.
ZNF395	55893	broad.mit.edu	36	8	28266728	28266728	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018660	exon5	c.700delC	p.H234fs	.	.	.
ASPH	444	broad.mit.edu	36	8	62759297	62759298	+	Frame_Shift_Del	DEL	TG	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	TG	TG	TG	-	TG	TG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164753	exon2	c.20_21del	p.7_7del	.	.	.
LRRCC1	85444	broad.mit.edu	36	8	86228741	86228741	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033402	exon10	c.1501delA	p.K501fs	.	.	.
LRRC69	100130742	broad.mit.edu	36	8	92282121	92282121	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129890	exon7	c.858delA	p.G286fs	.	.	.
HRSP12	10247	broad.mit.edu	36	8	99187720	99187720	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005836	exon3	c.182delA	p.N61fs	.	.	.
INVS	27130	broad.mit.edu	36	9	102102755	102102756	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014425	exon17	c.3176_3177insA	p.P1059fs	.	.	.
MCART1	92014	broad.mit.edu	36	9	37877696	37877697	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033412	exon3	c.852_853insG	p.G284fs	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100095995	100095995	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005458	exon18	c.G2553T	p.K851N	.	.	.
GABBR2	9568	broad.mit.edu	36	9	100105438	100105438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005458	exon16	c.C2318T	p.T773M	.	.	.
COL15A1	1306	broad.mit.edu	36	9	100850103	100850103	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001855	exon28	c.G2793A	p.Q931Q	.	.	.
TMEFF1	8577	broad.mit.edu	36	9	102244235	102244235	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080655	exon2	c.G194A	p.R65Q	.	.	.
RNF20	56254	broad.mit.edu	36	9	103352772	103352772	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019592	exon10	c.T1156C	p.S386P	.	.	.
OR13C9	286362	broad.mit.edu	36	9	106420012	106420012	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001956	exon1	c.G295A	p.V99M	.	.	.
UGCG	7357	broad.mit.edu	36	9	113716833	113716833	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003358	exon2	c.T226A	p.L76M	.	.	.
KIAA1958	158405	broad.mit.edu	36	9	114461412	114461412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133465	exon4	c.G1393A	p.V465I	.	.	.
SNX30	401548	broad.mit.edu	36	9	114619892	114619892	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012994	exon3	c.A435T	p.E145D	.	.	.
RGS3	5998	broad.mit.edu	36	9	115338978	115338978	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144488	exon20	c.G1996A	p.A666T	.	.	.
AMBP	259	broad.mit.edu	36	9	115871815	115871815	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001633	exon6	c.G588A	p.E196E	.	.	.
TNC	3371	broad.mit.edu	36	9	116828634	116828634	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002160	exon26	c.G6331T	p.G2111C	.	.	.
LHX6	26468	broad.mit.edu	36	9	124029076	124029076	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199160	exon3	c.G211A	p.A71T	.	.	.
OR1B1	347169	broad.mit.edu	36	9	124431154	124431154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004450	exon1	c.G482A	p.R161H	.	.	.
STRBP	55342	broad.mit.edu	36	9	124927721	124927721	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171137	exon19	c.T1953G	p.P651P	.	.	.
DENND1A	57706	broad.mit.edu	36	9	125254415	125254415	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024820	exon17	c.G1260T	p.K420N	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126589245	126589245	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182487	exon2	c.C261T	p.R87R	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126589326	126589326	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182487	exon2	c.C342T	p.P114P	.	.	.
MAPKAP1	79109	broad.mit.edu	36	9	127474565	127474565	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006617	exon2	c.A110G	p.D37G	.	.	.
GARNL3	84253	broad.mit.edu	36	9	129195313	129195313	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032293	exon28	c.C3001A	p.L1001I	.	.	.
FAM102A	399665	broad.mit.edu	36	9	129750303	129750303	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035254	exon6	c.A484G	p.I162V	.	.	.
DNM1	1759	broad.mit.edu	36	9	130052291	130052291	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon19	c.C2152A	p.R718R	.	.	.
GLE1	2733	broad.mit.edu	36	9	130325935	130325935	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003722	exon6	c.G886T	p.A296S	.	.	.
ABL1	25	broad.mit.edu	36	9	132745283	132745283	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005157	exon9	c.G1431A	p.Q477Q	.	.	.
SARDH	1757	broad.mit.edu	36	9	135521787	135521787	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007101	exon20	c.C2522A	p.A841D	.	.	.
COL5A1	1289	broad.mit.edu	36	9	136826933	136826933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000093	exon34	c.C2750T	p.P917L	.	.	.
KIAA0649	9858	broad.mit.edu	36	9	137518202	137518202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014811	exon4	c.C2025T	p.D675D	.	.	.
SEC16A	9919	broad.mit.edu	36	9	138471767	138471767	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014866	exon18	c.C5500A	p.L1834M	.	.	.
FREM1	158326	broad.mit.edu	36	9	14841520	14841520	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144966	exon7	c.T914G	p.L305R	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18665874	18665874	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052866	exon10	c.A1105G	p.M369V	.	.	.
SLC24A2	25769	broad.mit.edu	36	9	19776464	19776464	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020344	exon2	c.C401T	p.A134V	.	.	.
VLDLR	7436	broad.mit.edu	36	9	2629950	2629950	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018056	exon3	c.A294G	p.E98E	.	.	.
C9orf82	79886	broad.mit.edu	36	9	26877366	26877366	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024828	exon2	c.G449A	p.C150Y	.	.	.
TEK	7010	broad.mit.edu	36	9	27202815	27202815	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000459	exon17	c.G2797A	p.A933T	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32625317	32625317	+	Silent	SNP	A	G	G	rs16918395	byHapMap	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.T261C	p.T87T	.	.	.
C9orf23	138716	broad.mit.edu	36	9	34601094	34601094	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148178	exon2	c.C200T	p.A67V	.	.	.
TLN1	7094	broad.mit.edu	36	9	35707759	35707759	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006289	exon18	c.G2020T	p.A674S	.	.	.
NPR2	4882	broad.mit.edu	36	9	35795897	35795897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon14	c.C2118T	p.D706D	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37506059	37506059	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012166	exon10	c.G2538A	p.S846S	.	.	.
RG9MTD3	158234	broad.mit.edu	36	9	37753636	37753636	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144964	exon4	c.C306A	p.P102P	.	.	.
PRKACG	5568	broad.mit.edu	36	9	70818229	70818229	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002732	exon1	c.C600T	p.C200C	.	.	.
PCSK5	5125	broad.mit.edu	36	9	77938888	77938888	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190482	exon10	c.A1252G	p.T418A	.	.	.
PRUNE2	158471	broad.mit.edu	36	9	78508133	78508133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015225	exon9	c.C8216T	p.T2739M	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8379326	8379326	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon21	c.C3062A	p.S1021Y	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8491056	8491056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002839	exon24	c.C1826T	p.P609L	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8494274	8494274	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon11	c.A1800C	p.R600S	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89511295	89511295	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon26	c.C3489T	p.G1163G	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89511484	89511484	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004938	exon26	c.G3678A	p.T1226T	.	.	.
FAM120A	23196	broad.mit.edu	36	9	95364312	95364312	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014612	exon17	c.C2950A	p.R984S	.	.	.
ZNF782	158431	broad.mit.edu	36	9	98620936	98620936	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001662	exon6	c.C1190A	p.P397H	.	.	.
ENG	2022	broad.mit.edu	36	9	129627034	129627034	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001114753	exon7	c.857delA	p.N286fs	.	.	.
FCN2	2220	broad.mit.edu	36	9	136917515	136917515	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004108	exon6	c.510delG	p.L170fs	.	.	.
WNK2	65268	broad.mit.edu	36	9	95091652	95091652	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006648	exon19	c.4795delG	p.G1599fs	.	.	.
CTSL3	392360	broad.mit.edu	36	9	89577691	89577691	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
MID1	4281	broad.mit.edu	36	X	10397562	10397563	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001193279	exon6	c.1460_1461insA	p.T487fs	.	.	.
PNPLA4	8228	broad.mit.edu	36	X	7849833	7849834	+	In_Frame_Ins	INS	-	GTC	GTC	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-	-	GTC	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172672	exon3	c.71_72insGAC	p.L24delinsRL	.	.	.
PORCN	64840	broad.mit.edu	36	X	48253062	48253063	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
XKRX	402415	broad.mit.edu	36	X	100056624	100056624	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_212559	exon3	c.C709T	p.P237S	.	.	.
ARMCX3	51566	broad.mit.edu	36	X	100766634	100766634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177948	exon5	c.C9T	p.Y3Y	.	.	.
CLCN4	1183	broad.mit.edu	36	X	10136182	10136182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001830	exon9	c.G941T	p.S314I	.	.	.
ESX1	80712	broad.mit.edu	36	X	103386173	103386173	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153448	exon1	c.G14A	p.R5H	.	.	.
IL1RAPL2	26280	broad.mit.edu	36	X	104897838	104897838	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017416	exon11	c.T1589G	p.L530R	.	.	.
MUM1L1	139221	broad.mit.edu	36	X	105337695	105337695	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152423	exon5	c.A1614C	p.Q538H	.	.	.
MORC4	79710	broad.mit.edu	36	X	106088255	106088255	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085354	exon11	c.G1352T	p.W451L	.	.	.
TEX13B	56156	broad.mit.edu	36	X	107111972	107111972	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031273	exon2	c.C42T	p.H14H	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107712783	107712783	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon17	c.A950G	p.D317G	.	.	.
COL4A5	1287	broad.mit.edu	36	X	107751752	107751752	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000495	exon32	c.G2741A	p.G914D	.	.	.
IRS4	8471	broad.mit.edu	36	X	107864863	107864863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003604	exon1	c.G1368A	p.L456L	.	.	.
LONRF3	79836	broad.mit.edu	36	X	117993326	117993326	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024778	exon1	c.G555A	p.G185G	.	.	.
ZBTB33	10009	broad.mit.edu	36	X	119273277	119273277	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006777	exon2	c.G1979A	p.G660D	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123346085	123346085	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon29	c.T6356A	p.I2119N	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123366735	123366735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon26	c.G5197A	p.G1733R	.	.	.
ODZ1	10178	broad.mit.edu	36	X	123855845	123855845	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014253	exon3	c.T516C	p.A172A	.	.	.
BCORL1	63035	broad.mit.edu	36	X	128974271	128974271	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021946	exon2	c.C123T	p.G41G	.	.	.
ENOX2	10495	broad.mit.edu	36	X	129627333	129627333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182314	exon10	c.C1066T	p.R356W	.	.	.
FRMD7	90167	broad.mit.edu	36	X	131040322	131040322	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194277	exon12	c.T1404C	p.R468R	.	.	.
ATXN3L	92552	broad.mit.edu	36	X	13247206	13247206	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135995	exon1	c.G769T	p.G257C	.	.	.
HPRT1	3251	broad.mit.edu	36	X	133460354	133460354	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000194	exon8	c.T583A	p.Y195N	.	.	.
FAM127B	26071	broad.mit.edu	36	X	134013533	134013533	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001078172	exon1	c.T272C	p.L91P	.	.	.
CT45A5	441521	broad.mit.edu	36	X	134775632	134775632	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172288	exon3	c.A359G	p.Q120R	.	.	.
EGFL6	25975	broad.mit.edu	36	X	13522910	13522910	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167890	exon3	c.C222T	p.C74C	.	.	.
ARHGEF6	9459	broad.mit.edu	36	X	135591728	135591728	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004840	exon14	c.A1545T	p.T515T	.	.	.
GPR101	83550	broad.mit.edu	36	X	135941016	135941016	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054021	exon1	c.C484T	p.Q162X	.	.	.
ATP11C	286410	broad.mit.edu	36	X	138706211	138706211	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010986	exon12	c.A1102G	p.M368V	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140794842	140794842	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138702	exon3	c.C474T	p.A158A	.	.	.
MAGEC3	139081	broad.mit.edu	36	X	140813265	140813265	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138702	exon8	c.C1913T	p.T638I	.	.	.
UBE2NL	389898	broad.mit.edu	36	X	142794908	142794908	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012989	exon1	c.C40A	p.R14S	.	.	.
SLITRK2	84631	broad.mit.edu	36	X	144714055	144714055	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144006	exon3	c.C2420T	p.P807L	.	.	.
FMR1NB	158521	broad.mit.edu	36	X	146897863	146897863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152578	exon4	c.G572A	p.G191D	.	.	.
MAGEA11	4110	broad.mit.edu	36	X	148576191	148576191	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011544	exon5	c.G981T	p.K327N	.	.	.
MAGEA11	4110	broad.mit.edu	36	X	148576921	148576921	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011544	exon5	c.T251C	p.L84P	.	.	.
ASB9	140462	broad.mit.edu	36	X	15182865	15182865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168531	exon4	c.C197T	p.T66M	.	.	.
ZNF185	7739	broad.mit.edu	36	X	151838245	151838245	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007150	exon7	c.A494T	p.E165V	.	.	.
ZNF275	10838	broad.mit.edu	36	X	152265631	152265631	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080485	exon4	c.A294C	p.E98D	.	.	.
TREX2	11219	broad.mit.edu	36	X	152363829	152363829	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080701	exon2	c.T254C	p.L85P	.	.	.
PLXNB3	5365	broad.mit.edu	36	X	152687609	152687609	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163257	exon6	c.G1348T	p.G450C	.	.	.
ATP6AP1	537	broad.mit.edu	36	X	153315893	153315893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001183	exon7	c.C830T	p.A277V	.	.	.
GDI1	2664	broad.mit.edu	36	X	153324077	153324077	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001493	exon11	c.C1208T	p.S403F	.	.	.
PLXNA3	55558	broad.mit.edu	36	X	153348980	153348980	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017514	exon19	c.T3413C	p.V1138A	.	.	.
SLC10A3	8273	broad.mit.edu	36	X	153369946	153369946	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019848	exon2	c.G528A	p.T176T	.	.	.
F8	2157	broad.mit.edu	36	X	153874446	153874446	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000132	exon4	c.T560C	p.L187S	.	.	.
ACE2	59272	broad.mit.edu	36	X	15506339	15506339	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021804	exon10	c.T1091C	p.V364A	.	.	.
BEND2	139105	broad.mit.edu	36	X	18131931	18131931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153346	exon5	c.C518T	p.A173V	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18846763	18846763	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000292	exon19	c.C2094T	p.D698D	.	.	.
CNKSR2	22866	broad.mit.edu	36	X	21491421	21491421	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168649	exon12	c.C1391A	p.P464H	.	.	.
PCYT1B	9468	broad.mit.edu	36	X	24518061	24518061	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163264	exon4	c.G432T	p.K144N	.	.	.
POLA1	5422	broad.mit.edu	36	X	24642675	24642675	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon5	c.T412C	p.F138L	.	.	.
POLA1	5422	broad.mit.edu	36	X	24771642	24771642	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016937	exon34	c.C3956A	p.P1319H	.	.	.
GYG2	8908	broad.mit.edu	36	X	2782118	2782118	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184703	exon5	c.G340A	p.G114R	.	.	.
ARSD	414	broad.mit.edu	36	X	2853762	2853762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_009589	exon2	c.C89T	p.T30M	.	.	.
DMD	1756	broad.mit.edu	36	X	31132042	31132042	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004015	exon6	c.G560A	p.G187E	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3248722	3248722	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.A5004G	p.S1668S	.	.	.
FAM47B	170062	broad.mit.edu	36	X	34871025	34871025	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152631	exon1	c.G156T	p.T52T	.	.	.
MAGEB16	139604	broad.mit.edu	36	X	35730303	35730303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099921	exon2	c.G69A	p.Q23Q	.	.	.
PRKX	5613	broad.mit.edu	36	X	3602724	3602724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005044	exon2	c.G250A	p.D84N	.	.	.
MED14	9282	broad.mit.edu	36	X	40408583	40408583	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004229	exon25	c.G3368A	p.R1123H	.	.	.
GPR34	2857	broad.mit.edu	36	X	41440840	41440840	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005300	exon3	c.T1010C	p.I337T	.	.	.
SLC9A7	84679	broad.mit.edu	36	X	46406438	46406438	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032591	exon7	c.G998A	p.G333D	.	.	.
ZNF81	347344	broad.mit.edu	36	X	47659304	47659304	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007137	exon5	c.T315G	p.I105M	.	.	.
SSX3	10214	broad.mit.edu	36	X	48096515	48096515	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021014	exon5	c.G294T	p.Q98H	.	.	.
SLC38A5	92745	broad.mit.edu	36	X	48210346	48210346	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033518	exon5	c.C192T	p.S64S	.	.	.
GATA1	2623	broad.mit.edu	36	X	48537303	48537303	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002049	exon6	c.G1030A	p.G344R	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48724784	48724784	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020137	exon16	c.C1285T	p.R429W	.	.	.
TFE3	7030	broad.mit.edu	36	X	48775962	48775962	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006521	exon9	c.T1178C	p.V393A	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48953144	48953144	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon41	c.C4743A	p.G1581G	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48963901	48963901	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon19	c.G2394T	p.E798D	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48971521	48971521	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon8	c.C1039T	p.L347L	.	.	.
CCDC22	28952	broad.mit.edu	36	X	48986358	48986358	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014008	exon4	c.T424C	p.W142R	.	.	.
CCDC22	28952	broad.mit.edu	36	X	48986736	48986736	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014008	exon6	c.C578A	p.P193H	.	.	.
SHROOM4	57477	broad.mit.edu	36	X	50395404	50395404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020717	exon4	c.G409A	p.V137M	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51654568	51654568	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005333	exon3	c.C151A	p.L51I	.	.	.
XAGE5	170627	broad.mit.edu	36	X	52858921	52858921	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130775	exon3	c.A105G	p.E35E	.	.	.
KDM5C	8242	broad.mit.edu	36	X	53247477	53247477	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004187	exon14	c.C2041T	p.R681X	.	.	.
IQSEC2	23096	broad.mit.edu	36	X	53287803	53287803	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111125	exon10	c.C2903A	p.P968H	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53590149	53590149	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon70	c.C10888T	p.L3630L	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53598398	53598398	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon61	c.G8415A	p.E2805E	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53661042	53661042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon20	c.C1763T	p.A588V	.	.	.
FGD1	2245	broad.mit.edu	36	X	54508627	54508627	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004463	exon8	c.G1618A	p.D540N	.	.	.
FGD1	2245	broad.mit.edu	36	X	54513524	54513524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004463	exon4	c.C751T	p.P251S	.	.	.
MTMR8	55613	broad.mit.edu	36	X	63486633	63486633	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017677	exon5	c.G511A	p.V171I	.	.	.
OTUD6A	139562	broad.mit.edu	36	X	69199740	69199740	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207320	exon1	c.C641T	p.T214M	.	.	.
AWAT1	158833	broad.mit.edu	36	X	69373680	69373680	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013579	exon4	c.G317A	p.G106D	.	.	.
P2RY4	5030	broad.mit.edu	36	X	69395756	69395756	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002565	exon1	c.C444T	p.R148R	.	.	.
ACRC	93953	broad.mit.edu	36	X	70740945	70740945	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052957	exon8	c.G1093A	p.D365N	.	.	.
RGAG4	340526	broad.mit.edu	36	X	71267163	71267163	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024455	exon1	c.C953A	p.P318Q	.	.	.
RLIM	51132	broad.mit.edu	36	X	73728875	73728875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183353	exon5	c.C1000T	p.R334W	.	.	.
ATRX	546	broad.mit.edu	36	X	76824443	76824443	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000489	exon9	c.G2961T	p.K987N	.	.	.
ATP7A	538	broad.mit.edu	36	X	77188543	77188543	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000052	exon23	c.T4323C	p.D1441D	.	.	.
POU3F4	5456	broad.mit.edu	36	X	82650628	82650628	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000307	exon1	c.G640A	p.D214N	.	.	.
KLHL4	56062	broad.mit.edu	36	X	86659595	86659595	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057162	exon1	c.C43A	p.L15I	.	.	.
PCDH11X	27328	broad.mit.edu	36	X	91760436	91760436	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032968	exon7	c.A3885G	p.G1295G	.	.	.
NOX1	27035	broad.mit.edu	36	X	99991863	99991863	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007052	exon9	c.C1066T	p.R356X	.	.	.
USP26	83844	broad.mit.edu	36	X	131988871	131988871	+	Frame_Shift_Del	DEL	A	-	-	rs61758857	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031907	exon1	c.1044delT	p.F348fs	.	.	.
SLC9A7	84679	broad.mit.edu	36	X	46414014	46414014	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032591	exon5	c.765delT	p.F255fs	.	.	.
OGT	8473	broad.mit.edu	36	X	70699550	70699550	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181673	exon16	c.2076delT	p.T692fs	.	.	.
PCDH19	57526	broad.mit.edu	36	X	99549161	99549161	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105243	exon1	c.1091delC	p.P364fs	.	.	.
SSX6	280657	broad.mit.edu	36	X	47861430	47861430	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
NYX	60506	broad.mit.edu	36	X	41192002	41192002	+	De_novo_Start_InFrame	DEL	G	-	-	novel	unknown	TCGA-AA-3947-01A-01W-0995-10	TCGA-AA-3947-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
