Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
HPS1	3257	broad.mit.edu	36	10	100192979	100192979	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182639	exon3	c.C9T	p.C3C	.	.	.
CNNM1	26507	broad.mit.edu	36	10	101137575	101137575	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020348	exon8	c.G2349A	p.R783R	.	.	.
PDZD7	79955	broad.mit.edu	36	10	102767890	102767890	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195263	exon9	c.G1478T	p.S493I	.	.	.
TMEM180	79847	broad.mit.edu	36	10	104223464	104223464	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024789	exon8	c.G1073T	p.S358I	.	.	.
TRIM8	81603	broad.mit.edu	36	10	104406645	104406645	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030912	exon6	c.C1200T	p.Y400Y	.	.	.
COL17A1	1308	broad.mit.edu	36	10	105791077	105791077	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000494	exon38	c.G2621A	p.G874D	.	.	.
USP6NL	9712	broad.mit.edu	36	10	11567065	11567065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014688	exon13	c.C836T	p.T279I	.	.	.
KIAA1598	57698	broad.mit.edu	36	10	118701501	118701501	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018330	exon6	c.G443A	p.R148Q	.	.	.
MKI67	4288	broad.mit.edu	36	10	129795796	129795796	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145966	exon12	c.C3218T	p.A1073V	.	.	.
DPYSL4	10570	broad.mit.edu	36	10	133865494	133865494	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006426	exon11	c.G1165A	p.A389T	.	.	.
FAM107B	83641	broad.mit.edu	36	10	14856466	14856466	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031453	exon1	c.G203A	p.S68N	.	.	.
CUBN	8029	broad.mit.edu	36	10	16997164	16997164	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081	exon47	c.C7224A	p.G2408G	.	.	.
PIP4K2A	5305	broad.mit.edu	36	10	22868906	22868906	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005028	exon9	c.C1140T	p.G380G	.	.	.
KIAA1217	56243	broad.mit.edu	36	10	24548627	24548627	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019590	exon2	c.G137A	p.R46H	.	.	.
SVIL	6840	broad.mit.edu	36	10	29802869	29802869	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003174	exon28	c.C4155T	p.C1385C	.	.	.
MTPAP	55149	broad.mit.edu	36	10	30642724	30642724	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018109	exon9	c.G1569A	p.R523R	.	.	.
FZD8	8325	broad.mit.edu	36	10	35969119	35969119	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031866	exon1	c.G1245A	p.V415V	.	.	.
BMS1	9790	broad.mit.edu	36	10	42635769	42635769	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014753	exon16	c.G2660A	p.R887H	.	.	.
CSGALNACT2	55454	broad.mit.edu	36	10	42971100	42971100	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018590	exon2	c.A497G	p.H166R	.	.	.
ZNF485	220992	broad.mit.edu	36	10	43432135	43432135	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145312	exon5	c.C638A	p.P213H	.	.	.
RASSF4	83937	broad.mit.edu	36	10	44806404	44806404	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032023	exon9	c.C688T	p.R230W	.	.	.
OGDHL	55753	broad.mit.edu	36	10	50622130	50622130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143996	exon13	c.G1606A	p.A536T	.	.	.
AGAP7	653268	broad.mit.edu	36	10	51142588	51142588	+	Missense_Mutation	SNP	A	C	C	rs2338457	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077685	exon4	c.T398G	p.I133S	.	.	.
FAM21A	387680	broad.mit.edu	36	10	51499315	51499315	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005751	exon3	c.A129G	p.L43L	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55450170	55450170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon19	c.G2428A	p.D810N	.	.	.
FAM13C	220965	broad.mit.edu	36	10	60682606	60682606	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143773	exon13	c.A1242G	p.K414K	.	.	.
EGR2	1959	broad.mit.edu	36	10	64243919	64243919	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000399	exon2	c.A485C	p.D162A	.	.	.
JMJD1C	221037	broad.mit.edu	36	10	64638182	64638182	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004241	exon7	c.C2596A	p.P866T	.	.	.
ADAMTS14	140766	broad.mit.edu	36	10	72183571	72183571	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080722	exon19	c.G2739A	p.T913T	.	.	.
CBARA1	10367	broad.mit.edu	36	10	73963523	73963523	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006077	exon5	c.G524A	p.R175H	.	.	.
USP54	159195	broad.mit.edu	36	10	74949716	74949716	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152586	exon17	c.G2523A	p.T841T	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7648147	7648147	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon13	c.C2379T	p.N793N	.	.	.
DYDC2	84332	broad.mit.edu	36	10	82116577	82116577	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032372	exon5	c.G424A	p.A142T	.	.	.
LARP4B	23185	broad.mit.edu	36	10	849113	849113	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015155	exon17	c.C1970T	p.T657M	.	.	.
LGI1	9211	broad.mit.edu	36	10	95546992	95546992	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005097	exon8	c.C1116A	p.S372S	.	.	.
PLCE1	51196	broad.mit.edu	36	10	95882076	95882076	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165979	exon2	c.C438T	p.R146R	.	.	.
CYP2C19	1557	broad.mit.edu	36	10	96524935	96524935	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000769	exon2	c.T299G	p.F100C	.	.	.
PAOX	196743	broad.mit.edu	36	10	135043845	135043845	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152911	exon2	c.534delG	p.K178fs	.	.	.
IFIT1	3434	broad.mit.edu	36	10	91153013	91153013	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001548	exon2	c.1001delA	p.E334fs	.	.	.
EIF4G2	1982	broad.mit.edu	36	11	10779110	10779110	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001418	exon15	c.G1514A	p.R505H	.	.	.
KDELC2	143888	broad.mit.edu	36	11	107855340	107855340	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153705	exon6	c.G1191A	p.S397S	.	.	.
EXPH5	23086	broad.mit.edu	36	11	107888208	107888208	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015065	exon6	c.A3236T	p.N1079I	.	.	.
ALG9	79796	broad.mit.edu	36	11	111216612	111216612	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024740	exon10	c.C1150T	p.R384C	.	.	.
TIMM8B	26521	broad.mit.edu	36	11	111461296	111461296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012459	exon2	c.G230A	p.R77H	.	.	.
DKK3	27122	broad.mit.edu	36	11	11946532	11946532	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018057	exon4	c.C514T	p.R172W	.	.	.
DKK3	27122	broad.mit.edu	36	11	11976879	11976879	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018057	exon3	c.A375G	p.Q125Q	.	.	.
SORL1	6653	broad.mit.edu	36	11	120990895	120990895	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003105	exon41	c.G5525A	p.R1842H	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12186152	12186152	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014632	exon5	c.G479A	p.R160H	.	.	.
NTM	50863	broad.mit.edu	36	11	131286691	131286691	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144058	exon1	c.G106A	p.A36T	.	.	.
OPCML	4978	broad.mit.edu	36	11	132032381	132032381	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012393	exon3	c.C190T	p.R64C	.	.	.
PDE3B	5140	broad.mit.edu	36	11	14837292	14837292	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000922	exon13	c.G2648A	p.R883H	.	.	.
SOX6	55553	broad.mit.edu	36	11	16296649	16296649	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033326	exon3	c.C364T	p.R122C	.	.	.
TMEM86A	144110	broad.mit.edu	36	11	18679989	18679989	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153347	exon3	c.G580A	p.A194T	.	.	.
SLC6A5	9152	broad.mit.edu	36	11	20579767	20579767	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004211	exon2	c.G520A	p.V174M	.	.	.
LUZP2	338645	broad.mit.edu	36	11	24707399	24707399	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009909	exon2	c.C171T	p.V57V	.	.	.
LGR4	55366	broad.mit.edu	36	11	27346272	27346272	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018490	exon18	c.C2574T	p.C858C	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989302	29989302	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002233	exon2	c.G1500T	p.E500D	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989799	29989799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002233	exon2	c.G1003A	p.D335N	.	.	.
ELP4	26610	broad.mit.edu	36	11	31761587	31761587	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019040	exon10	c.C1214T	p.A405V	.	.	.
CCDC73	493860	broad.mit.edu	36	11	32594235	32594235	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008391	exon15	c.A1202T	p.N401I	.	.	.
LDLRAD3	143458	broad.mit.edu	36	11	36205411	36205411	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174902	exon5	c.C655T	p.R219C	.	.	.
ALX4	60529	broad.mit.edu	36	11	44253598	44253598	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021926	exon2	c.G653A	p.R218Q	.	.	.
PHF21A	51317	broad.mit.edu	36	11	45943545	45943545	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101802	exon9	c.C890T	p.T297M	.	.	.
NDUFS3	4722	broad.mit.edu	36	11	47558994	47558994	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004551	exon4	c.T263A	p.I88N	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885881	4885881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.G706A	p.A236T	.	.	.
OR4D6	219983	broad.mit.edu	36	11	58981798	58981798	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004708	exon1	c.G789A	p.M263I	.	.	.
OR56A4	120793	broad.mit.edu	36	11	5980698	5980698	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005179	exon1	c.T257A	p.L86H	.	.	.
DDB1	1642	broad.mit.edu	36	11	60853628	60853628	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001923	exon4	c.G332A	p.R111H	.	.	.
CNGA4	1262	broad.mit.edu	36	11	6218347	6218347	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037329	exon4	c.C747T	p.G249G	.	.	.
SYVN1	84447	broad.mit.edu	36	11	64655194	64655194	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032431	exon9	c.G809A	p.R270H	.	.	.
CTSW	1521	broad.mit.edu	36	11	65406524	65406524	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001335	exon5	c.G489T	p.E163D	.	.	.
OR2AG2	338755	broad.mit.edu	36	11	6746438	6746438	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004490	exon1	c.C327T	p.S109S	.	.	.
INPPL1	3636	broad.mit.edu	36	11	71617450	71617450	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001567	exon4	c.G429A	p.P143P	.	.	.
ARRB1	408	broad.mit.edu	36	11	74657648	74657648	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020251	exon13	c.C1002T	p.D334D	.	.	.
C11orf30	56946	broad.mit.edu	36	11	75934546	75934546	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020193	exon20	c.C3331T	p.R1111C	.	.	.
PPFIBP2	8495	broad.mit.edu	36	11	7610706	7610706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003621	exon12	c.G1101A	p.G367G	.	.	.
FAT3	120114	broad.mit.edu	36	11	92173786	92173786	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon9	c.C7959T	p.I2653I	.	.	.
MAML2	84441	broad.mit.edu	36	11	95364504	95364504	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032427	exon3	c.G2171T	p.G724V	.	.	.
MAP3K11	4296	broad.mit.edu	36	11	65123610	65123610	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002419	exon9	c.2037delC	p.P679fs	.	.	.
TBC1D10C	374403	broad.mit.edu	36	11	66933141	66933141	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198517	exon9	c.954delC	p.I318fs	.	.	.
GTF2H3	2967	broad.mit.edu	36	12	122689814	122689815	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001516	exon2	c.64_65insG	p.W22fs	.	.	.
CLEC12A	160364	broad.mit.edu	36	12	10015550	10015550	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138337	exon1	c.A88G	p.K30E	.	.	.
STAB2	55576	broad.mit.edu	36	12	102668545	102668545	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017564	exon60	c.C6497A	p.P2166Q	.	.	.
RFX4	5992	broad.mit.edu	36	12	105627320	105627320	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032491	exon5	c.C634T	p.R212X	.	.	.
OAS3	4940	broad.mit.edu	36	12	111871297	111871297	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006187	exon6	c.G1278A	p.P426P	.	.	.
TPCN1	53373	broad.mit.edu	36	12	112191996	112191996	+	Silent	SNP	G	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017901	exon7	c.G711C	p.L237L	.	.	.
PLBD2	196463	broad.mit.edu	36	12	112297066	112297066	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159727	exon5	c.T730C	p.C244R	.	.	.
MED13L	23389	broad.mit.edu	36	12	114942129	114942129	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015335	exon6	c.G657A	p.T219T	.	.	.
CCDC64	92558	broad.mit.edu	36	12	118920773	118920773	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207311	exon2	c.C495T	p.G165G	.	.	.
HPD	3242	broad.mit.edu	36	12	120776994	120776994	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002150	exon7	c.A412G	p.T138A	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121323565	121323565	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon24	c.G3989A	p.R1330H	.	.	.
MANSC1	54682	broad.mit.edu	36	12	12374685	12374685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018050	exon4	c.C839T	p.T280M	.	.	.
TMEM132D	121256	broad.mit.edu	36	12	128260124	128260124	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133448	exon5	c.A1337G	p.K446R	.	.	.
GRIN2B	2904	broad.mit.edu	36	12	13659844	13659844	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000834	exon6	c.G1350A	p.P450P	.	.	.
ARHGDIB	397	broad.mit.edu	36	12	14992093	14992093	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001175	exon4	c.G323T	p.R108I	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1780503	1780503	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172364	exon31	c.T2835C	p.S945S	.	.	.
CACNA2D4	93589	broad.mit.edu	36	12	1894335	1894335	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172364	exon2	c.C255T	p.G85G	.	.	.
SLC6A13	6540	broad.mit.edu	36	12	200491	200491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190997	exon13	c.C1417T	p.R473C	.	.	.
C12orf77	196415	broad.mit.edu	36	12	25040202	25040202	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101339	exon3	c.G213A	p.T71T	.	.	.
PPFIBP1	8496	broad.mit.edu	36	12	27721272	27721272	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003622	exon19	c.C1591T	p.R531X	.	.	.
KLHDC5	57542	broad.mit.edu	36	12	27835963	27835963	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020782	exon2	c.G928A	p.A310T	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40253613	40253613	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon10	c.G2765A	p.R922Q	.	.	.
TWF1	5756	broad.mit.edu	36	12	42479520	42479520	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002822	exon5	c.C533A	p.P178H	.	.	.
FGF23	8074	broad.mit.edu	36	12	4352122	4352122	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020638	exon2	c.G214T	p.A72S	.	.	.
SRSF2IP	9169	broad.mit.edu	36	12	44602160	44602160	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004719	exon15	c.C4330T	p.R1444W	.	.	.
MLL2	8085	broad.mit.edu	36	12	47732104	47732104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003482	exon10	c.G1629A	p.S543S	.	.	.
DNAJC22	79962	broad.mit.edu	36	12	48031484	48031484	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024902	exon3	c.T958C	p.F320L	.	.	.
SPATS2	65244	broad.mit.edu	36	12	48180177	48180177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023071	exon9	c.G761A	p.R254Q	.	.	.
AQP5	362	broad.mit.edu	36	12	48642359	48642359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001651	exon1	c.G292A	p.A98T	.	.	.
ACCN2	41	broad.mit.edu	36	12	48758132	48758132	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020039	exon5	c.C792T	p.G264G	.	.	.
SLC11A2	4891	broad.mit.edu	36	12	49674607	49674607	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174125	exon11	c.A1151G	p.D384G	.	.	.
BIN2	51411	broad.mit.edu	36	12	49983139	49983139	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016293	exon3	c.A216G	p.K72K	.	.	.
KCNA5	3741	broad.mit.edu	36	12	5024594	5024594	+	Silent	SNP	C	T	T	rs72546671	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002234	exon1	c.C1020T	p.L340L	.	.	.
ACVRL1	94	broad.mit.edu	36	12	50596195	50596195	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077401	exon7	c.G1157A	p.R386H	.	.	.
KRT77	374454	broad.mit.edu	36	12	51382955	51382955	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175078	exon1	c.C531A	p.S177S	.	.	.
HOXC12	3228	broad.mit.edu	36	12	52636420	52636420	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173860	exon2	c.C652T	p.R218C	.	.	.
SLC16A7	9194	broad.mit.edu	36	12	58454827	58454827	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004731	exon4	c.G484A	p.A162T	.	.	.
MON2	23041	broad.mit.edu	36	12	61205161	61205161	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015026	exon10	c.G1140A	p.Q380Q	.	.	.
DPY19L2	283417	broad.mit.edu	36	12	62240637	62240637	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173812	exon22	c.C2199T	p.S733S	.	.	.
GRIP1	23426	broad.mit.edu	36	12	65135465	65135465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178074	exon10	c.A1189C	p.K397Q	.	.	.
ACRBP	84519	broad.mit.edu	36	12	6619779	6619779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032489	exon7	c.C1248T	p.I416I	.	.	.
DYRK2	8445	broad.mit.edu	36	12	66337287	66337287	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003583	exon2	c.T114C	p.L38L	.	.	.
PTPRB	5787	broad.mit.edu	36	12	69267108	69267108	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109754	exon9	c.G2257A	p.V753I	.	.	.
PTPN6	5777	broad.mit.edu	36	12	6934287	6934287	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002831	exon4	c.G385A	p.E129K	.	.	.
ACSS3	79611	broad.mit.edu	36	12	80052855	80052855	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024560	exon3	c.A586C	p.S196R	.	.	.
SLC6A15	55117	broad.mit.edu	36	12	83794426	83794426	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182767	exon6	c.G848A	p.R283H	.	.	.
A2M	2	broad.mit.edu	36	12	9153882	9153882	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000014	exon6	c.G521A	p.R174H	.	.	.
PLXNC1	10154	broad.mit.edu	36	12	93197434	93197434	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005761	exon22	c.G3653A	p.R1218Q	.	.	.
ANO4	121601	broad.mit.edu	36	12	99997168	99997168	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178826	exon14	c.A1274G	p.D425G	.	.	.
SETD1B	23067	broad.mit.edu	36	12	120727041	120727041	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015048	exon1	c.15delC	p.H5fs	.	.	.
POU6F1	5463	broad.mit.edu	36	12	49870473	49870473	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002702	exon6	c.730delC	p.Q244fs	.	.	.
LTBR	4055	broad.mit.edu	36	12	6363811	6363811	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002342	exon1	c.26delC	p.A9fs	.	.	.
PLEKHA9	51054	broad.mit.edu	36	12	43853361	43853361	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
FGF14	2259	broad.mit.edu	36	13	101173234	101173234	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175929	exon5	c.C707T	p.A236V	.	.	.
ING1	3621	broad.mit.edu	36	13	110170143	110170143	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198219	exon2	c.T703C	p.W235R	.	.	.
ZMYM2	7750	broad.mit.edu	36	13	19539083	19539083	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_197968	exon20	c.C3225T	p.G1075G	.	.	.
EFHA1	221154	broad.mit.edu	36	13	20993388	20993388	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152726	exon6	c.T593G	p.F198C	.	.	.
LNX2	222484	broad.mit.edu	36	13	27041253	27041253	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153371	exon3	c.C568T	p.R190W	.	.	.
PAN3	255967	broad.mit.edu	36	13	27732683	27732683	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175854	exon8	c.C1348T	p.R450X	.	.	.
FLT1	2321	broad.mit.edu	36	13	27906056	27906056	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon6	c.G713A	p.R238H	.	.	.
PDS5B	23047	broad.mit.edu	36	13	32242297	32242297	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015032	exon32	c.C3663T	p.P1221P	.	.	.
NBEA	26960	broad.mit.edu	36	13	35139642	35139642	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015678	exon56	c.C8533T	p.R2845X	.	.	.
DCLK1	9201	broad.mit.edu	36	13	35584117	35584117	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004734	exon3	c.G612A	p.L204L	.	.	.
COG6	57511	broad.mit.edu	36	13	39196682	39196682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145079	exon17	c.C1730T	p.T577I	.	.	.
NEK5	341676	broad.mit.edu	36	13	51537604	51537604	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199289	exon22	c.C2067T	p.S689S	.	.	.
KLF12	11278	broad.mit.edu	36	13	73167762	73167762	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007249	exon8	c.G1075A	p.A359T	.	.	.
SLITRK6	84189	broad.mit.edu	36	13	85266391	85266391	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032229	exon2	c.G2254A	p.A752T	.	.	.
IPO5	3843	broad.mit.edu	36	13	97471378	97471378	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002271	exon28	c.G3251A	p.R1084H	.	.	.
AMN	81693	broad.mit.edu	36	14	102458820	102458820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030943	exon1	c.C42T	p.C14C	.	.	.
RPGRIP1	57096	broad.mit.edu	36	14	20864107	20864107	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020366	exon16	c.C2645A	p.P882H	.	.	.
SLC22A17	51310	broad.mit.edu	36	14	22891090	22891090	+	De_novo_Start_OutOfFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020372	exon1	c.G174A	p.S58S	.	.	.
NFATC4	4776	broad.mit.edu	36	14	23912752	23912752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136022	exon6	c.C1760T	p.A587V	.	.	.
COCH	1690	broad.mit.edu	36	14	30424387	30424387	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004086	exon10	c.C770T	p.T257M	.	.	.
HEATR5A	25938	broad.mit.edu	36	14	30897958	30897958	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015473	exon9	c.C1249T	p.Q417X	.	.	.
FAM179B	23116	broad.mit.edu	36	14	44501738	44501738	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015091	exon1	c.C364T	p.R122W	.	.	.
FANCM	57697	broad.mit.edu	36	14	44675112	44675112	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon1	c.C128T	p.P43L	.	.	.
SOS2	6655	broad.mit.edu	36	14	49717146	49717146	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006939	exon7	c.A863G	p.Q288R	.	.	.
ERO1L	30001	broad.mit.edu	36	14	52202929	52202929	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014584	exon7	c.G543A	p.L181L	.	.	.
SYT16	83851	broad.mit.edu	36	14	61532955	61532955	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031914	exon1	c.A465G	p.Q155Q	.	.	.
SYNE2	23224	broad.mit.edu	36	14	63588077	63588077	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015180	exon48	c.G7693A	p.A2565T	.	.	.
SPTB	6710	broad.mit.edu	36	14	64341454	64341454	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon2	c.C256T	p.R86C	.	.	.
SLC39A9	55334	broad.mit.edu	36	14	68994940	68994940	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018375	exon7	c.C801T	p.G267G	.	.	.
PCNX	22990	broad.mit.edu	36	14	70514510	70514510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014982	exon6	c.G1703A	p.R568Q	.	.	.
DCAF4	26094	broad.mit.edu	36	14	72482453	72482453	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181341	exon5	c.T460G	p.F154V	.	.	.
NRXN3	9369	broad.mit.edu	36	14	79003370	79003370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138970	exon2	c.C301T	p.P101S	.	.	.
RPS6KA5	9252	broad.mit.edu	36	14	90426593	90426593	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004755	exon14	c.C1827T	p.G609G	.	.	.
CLMN	79789	broad.mit.edu	36	14	94739215	94739215	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024734	exon9	c.G2224A	p.A742T	.	.	.
CLMN	79789	broad.mit.edu	36	14	94740352	94740352	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024734	exon9	c.C1087T	p.R363C	.	.	.
GLRX5	51218	broad.mit.edu	36	14	95080089	95080089	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016417	exon2	c.C348T	p.G116G	.	.	.
INF2	64423	broad.mit.edu	36	14	104240802	104240803	+	Frame_Shift_Del	DEL	GC	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032714	exon4	c.633_634del	p.211_212del	.	.	.
RNF31	55072	broad.mit.edu	36	14	23699604	23699604	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017999	exon21	c.3201delC	p.I1067fs	.	.	.
MPP5	64398	broad.mit.edu	36	14	66853365	66853365	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022474	exon10	c.1289delA	p.E430fs	.	.	.
CSPG4	1464	broad.mit.edu	36	15	73755597	73755598	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001897	exon10	c.6318_6319insG	p.G2106fs	.	.	.
MAGEL2	54551	broad.mit.edu	36	15	21441737	21441737	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019066	exon1	c.G2246A	p.R749H	.	.	.
UBE3A	7337	broad.mit.edu	36	15	23150770	23150770	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130839	exon10	c.C2278T	p.R760W	.	.	.
RYR3	6263	broad.mit.edu	36	15	31902558	31902558	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001036	exon81	c.T11065G	p.S3689A	.	.	.
THBS1	7057	broad.mit.edu	36	15	37673109	37673109	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003246	exon19	c.C3215A	p.P1072H	.	.	.
EIF2AK4	440275	broad.mit.edu	36	15	38108908	38108908	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013703	exon34	c.C4512T	p.S1504S	.	.	.
BUB1B	701	broad.mit.edu	36	15	38264829	38264829	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001211	exon7	c.T923C	p.L308P	.	.	.
PLCB2	5330	broad.mit.edu	36	15	38370080	38370080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004573	exon29	c.G3199A	p.A1067T	.	.	.
PLA2G4E	123745	broad.mit.edu	36	15	40082153	40082153	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080490	exon5	c.C513T	p.G171G	.	.	.
CCNDBP1	23582	broad.mit.edu	36	15	41269573	41269573	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012142	exon5	c.C360T	p.G120G	.	.	.
ZSCAN29	146050	broad.mit.edu	36	15	41443759	41443759	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152455	exon4	c.G1336A	p.A446T	.	.	.
ZNF280D	54816	broad.mit.edu	36	15	54758170	54758170	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017661	exon11	c.G1146A	p.T382T	.	.	.
CA12	771	broad.mit.edu	36	15	61424738	61424738	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001218	exon4	c.C420T	p.F140F	.	.	.
DPP8	54878	broad.mit.edu	36	15	63553607	63553607	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017743	exon12	c.G1529A	p.G510E	.	.	.
CCDC33	80125	broad.mit.edu	36	15	72409626	72409626	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025055	exon12	c.A1334G	p.D445G	.	.	.
CYP1A2	1544	broad.mit.edu	36	15	72834241	72834241	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000761	exon7	c.G1310A	p.G437D	.	.	.
KIAA1024	23251	broad.mit.edu	36	15	77537718	77537718	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015206	exon2	c.G2174A	p.S725N	.	.	.
IL16	3603	broad.mit.edu	36	15	79358969	79358969	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172128	exon8	c.C880T	p.L294F	.	.	.
WHAMM	123720	broad.mit.edu	36	15	81296695	81296695	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080435	exon9	c.T1932A	p.P644P	.	.	.
SLC28A1	9154	broad.mit.edu	36	15	83279578	83279578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004213	exon15	c.G1406A	p.R469Q	.	.	.
C15orf42	90381	broad.mit.edu	36	15	87944888	87944888	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152259	exon9	c.A2121G	p.G707G	.	.	.
SV2B	9899	broad.mit.edu	36	15	89633848	89633848	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014848	exon13	c.G1802A	p.G601E	.	.	.
SLCO3A1	28232	broad.mit.edu	36	15	90470422	90470422	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013272	exon6	c.C1302T	p.C434C	.	.	.
PGPEP1L	145814	broad.mit.edu	36	15	97329401	97329401	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102612	exon5	c.C420T	p.G140G	.	.	.
MEF2A	4205	broad.mit.edu	36	15	98033140	98033140	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005587	exon7	c.C630T	p.S210S	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98489765	98489765	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139057	exon12	c.G1691A	p.R564H	.	.	.
ADAMTS17	170691	broad.mit.edu	36	15	98620083	98620083	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139057	exon5	c.T870C	p.R290R	.	.	.
RAB40C	57799	broad.mit.edu	36	16	617580	617581	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001172664	exon7	c.803_804insC	p.S268fs	.	.	.
NOMO1	23420	broad.mit.edu	36	16	14883981	14883981	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014287	exon26	c.G3057T	p.K1019N	.	.	.
ERI2	112479	broad.mit.edu	36	16	20722330	20722330	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080663	exon3	c.T101G	p.F34C	.	.	.
LYRM1	57149	broad.mit.edu	36	16	20834438	20834438	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020424	exon2	c.G60A	p.A20A	.	.	.
DNAH3	55567	broad.mit.edu	36	16	21000502	21000502	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017539	exon20	c.C2925T	p.C975C	.	.	.
OTOA	146183	broad.mit.edu	36	16	21645453	21645453	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144672	exon18	c.A1989G	p.S663S	.	.	.
DCI	1632	broad.mit.edu	36	16	2230104	2230104	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178029	exon7	c.G735A	p.T245T	.	.	.
USP31	57478	broad.mit.edu	36	16	23024309	23024309	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020718	exon5	c.G1043T	p.R348I	.	.	.
GTF3C1	2975	broad.mit.edu	36	16	27404944	27404944	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001520	exon24	c.C3733T	p.R1245C	.	.	.
GSG1L	146395	broad.mit.edu	36	16	27726329	27726329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_144675	exon5	c.G413A	p.R138H	.	.	.
KREMEN2	79412	broad.mit.edu	36	16	2954610	2954610	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172229	exon1	c.A88G	p.S30G	.	.	.
ZNF688	146542	broad.mit.edu	36	16	30489915	30489915	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145271	exon2	c.C227A	p.S76Y	.	.	.
NETO2	81831	broad.mit.edu	36	16	45720739	45720739	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon3	c.C129A	p.T43T	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46677028	46677028	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033226	exon27	c.C3805T	p.R1269X	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46778802	46778802	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145186	exon21	c.C2744A	p.P915Q	.	.	.
GLYR1	84656	broad.mit.edu	36	16	4795261	4795261	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032569	exon16	c.G1639A	p.V547M	.	.	.
UBN1	29855	broad.mit.edu	36	16	4848664	4848664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016936	exon3	c.C431T	p.A144V	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52279303	52279303	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127897	exon5	c.A605G	p.E202G	.	.	.
IRX5	10265	broad.mit.edu	36	16	53524301	53524301	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005853	exon2	c.G640A	p.E214K	.	.	.
MMP2	4313	broad.mit.edu	36	16	54070988	54070988	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004530	exon1	c.G96A	p.S32S	.	.	.
SLC6A2	6530	broad.mit.edu	36	16	54283392	54283392	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172504	exon5	c.T845C	p.V282A	.	.	.
CDH11	1009	broad.mit.edu	36	16	63539328	63539328	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon13	c.T2070C	p.F690F	.	.	.
CDH11	1009	broad.mit.edu	36	16	63563081	63563081	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001797	exon11	c.C1544T	p.A515V	.	.	.
HAS3	3038	broad.mit.edu	36	16	67706223	67706223	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005329	exon4	c.C1215T	p.R405R	.	.	.
WWP2	11060	broad.mit.edu	36	16	68523252	68523252	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199424	exon6	c.T323C	p.I108T	.	.	.
DDX19A	55308	broad.mit.edu	36	16	68956519	68956519	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018332	exon7	c.C588T	p.A196A	.	.	.
DHX38	9785	broad.mit.edu	36	16	70695144	70695144	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014003	exon13	c.G1780A	p.A594T	.	.	.
RFWD3	55159	broad.mit.edu	36	16	73219918	73219918	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018124	exon11	c.G1902A	p.E634E	.	.	.
CENPN	55839	broad.mit.edu	36	16	79617682	79617682	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100625	exon9	c.C748T	p.R250X	.	.	.
MBTPS1	8720	broad.mit.edu	36	16	82645687	82645687	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003791	exon23	c.A3027T	p.G1009G	.	.	.
CRISPLD2	83716	broad.mit.edu	36	16	83458031	83458031	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031476	exon7	c.C737T	p.T246M	.	.	.
ZDHHC7	55625	broad.mit.edu	36	16	83573080	83573080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017740	exon4	c.G337A	p.A113T	.	.	.
KIAA0182	23199	broad.mit.edu	36	16	84263555	84263555	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134473	exon15	c.G3251A	p.R1084Q	.	.	.
FBXO31	79791	broad.mit.edu	36	16	85951410	85951410	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024735	exon2	c.A404G	p.Y135C	.	.	.
DEF8	54849	broad.mit.edu	36	16	88558484	88558484	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207514	exon12	c.G1436A	p.R479K	.	.	.
MYH8	4626	broad.mit.edu	36	17	10262736	10262736	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002472	exon5	c.G462A	p.P154P	.	.	.
DNAH9	1770	broad.mit.edu	36	17	11730965	11730965	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004662	exon3	c.C6T	p.N2N	.	.	.
PRPF8	10594	broad.mit.edu	36	17	1525342	1525342	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006445	exon20	c.G2914A	p.E972K	.	.	.
TRPV2	51393	broad.mit.edu	36	17	16272374	16272374	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016113	exon9	c.C1369T	p.R457C	.	.	.
TNFRSF13B	23495	broad.mit.edu	36	17	16783735	16783735	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012452	exon5	c.G733A	p.A245T	.	.	.
DRG2	1819	broad.mit.edu	36	17	17938000	17938000	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001388	exon2	c.C213A	p.P71P	.	.	.
USP22	23326	broad.mit.edu	36	17	20859690	20859690	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015276	exon6	c.G805A	p.A269T	.	.	.
SARM1	23098	broad.mit.edu	36	17	23747090	23747090	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015077	exon8	c.C1961T	p.A654V	.	.	.
SPAG5	10615	broad.mit.edu	36	17	23943674	23943674	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006461	exon3	c.G715A	p.A239T	.	.	.
PROCA1	147011	broad.mit.edu	36	17	24055159	24055159	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152465	exon4	c.G555A	p.A185A	.	.	.
TMEM132E	124842	broad.mit.edu	36	17	29988333	29988333	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207313	exon10	c.T1924C	p.S642P	.	.	.
UNC45B	146862	broad.mit.edu	36	17	30525494	30525494	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173167	exon14	c.C1957A	p.L653M	.	.	.
SYNRG	11276	broad.mit.edu	36	17	32970262	32970262	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007247	exon19	c.C3598T	p.Q1200X	.	.	.
LASP1	3927	broad.mit.edu	36	17	34287959	34287959	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006148	exon2	c.C164T	p.A55V	.	.	.
NT5C3L	115024	broad.mit.edu	36	17	37244999	37244999	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052935	exon3	c.C163T	p.R55X	.	.	.
CNTNAP1	8506	broad.mit.edu	36	17	38097488	38097488	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003632	exon16	c.G2483A	p.G828D	.	.	.
CNTD1	124817	broad.mit.edu	36	17	38213370	38213370	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173478	exon6	c.G784A	p.A262T	.	.	.
BECN1	8678	broad.mit.edu	36	17	38224117	38224117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003766	exon6	c.C459T	p.N153N	.	.	.
VAT1	10493	broad.mit.edu	36	17	38424143	38424143	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006373	exon2	c.T587C	p.M196T	.	.	.
MPP3	4356	broad.mit.edu	36	17	39256899	39256899	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001932	exon10	c.G610A	p.A204T	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41500758	41500758	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015443	exon5	c.C1631A	p.P544H	.	.	.
NPEPPS	9520	broad.mit.edu	36	17	43046039	43046039	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006310	exon19	c.T2244A	p.Y748X	.	.	.
OSBPL7	114881	broad.mit.edu	36	17	43251351	43251351	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145798	exon5	c.G369A	p.K123K	.	.	.
SAMD14	201191	broad.mit.edu	36	17	45550609	45550609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174920	exon3	c.G125A	p.R42Q	.	.	.
ABCC3	8714	broad.mit.edu	36	17	46108890	46108890	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003786	exon23	c.G3320A	p.S1107N	.	.	.
PSMB6	5694	broad.mit.edu	36	17	4647795	4647795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002798	exon3	c.C275T	p.A92V	.	.	.
CA10	56934	broad.mit.edu	36	17	47363400	47363400	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020178	exon3	c.G228T	p.M76I	.	.	.
MMD	23531	broad.mit.edu	36	17	50826795	50826795	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012329	exon7	c.G616A	p.A206T	.	.	.
TRIM25	7706	broad.mit.edu	36	17	52324483	52324483	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005082	exon9	c.G1470A	p.P490P	.	.	.
RPS6KB1	6198	broad.mit.edu	36	17	55378833	55378833	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003161	exon15	c.G1480A	p.A494T	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64448694	64448694	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon3	c.G101T	p.W34L	.	.	.
ALOX12	239	broad.mit.edu	36	17	6840952	6840952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000697	exon2	c.C219T	p.D73D	.	.	.
CDC42EP4	23580	broad.mit.edu	36	17	68794099	68794099	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012121	exon2	c.G136A	p.A46T	.	.	.
DNAI2	64446	broad.mit.edu	36	17	69808859	69808859	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023036	exon8	c.A944G	p.E315G	.	.	.
C17orf77	146723	broad.mit.edu	36	17	70100332	70100332	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152460	exon3	c.G552A	p.R184R	.	.	.
NUP85	79902	broad.mit.edu	36	17	70739652	70739652	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024844	exon14	c.G1379T	p.R460L	.	.	.
GGA3	23163	broad.mit.edu	36	17	70748705	70748705	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014001	exon10	c.G876A	p.T292T	.	.	.
TNFSF12-TNFSF13	407977	broad.mit.edu	36	17	7400883	7400883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172089	exon6	c.C438T	p.Y146Y	.	.	.
TP53	7157	broad.mit.edu	36	17	7517845	7517845	+	Missense_Mutation	SNP	C	T	T	rs28934576	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126114	exon8	c.G818A	p.R273H	 TP53,central_nervous_system,brain,Substitution - Missense,-1 	.	.
SLC26A11	284129	broad.mit.edu	36	17	75825409	75825409	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166349	exon7	c.A824G	p.E275G	.	.	.
ASPSCR1	79058	broad.mit.edu	36	17	77536697	77536697	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024083	exon4	c.A299G	p.D100G	.	.	.
FOXK2	3607	broad.mit.edu	36	17	78134054	78134054	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004514	exon5	c.G1058T	p.R353M	.	.	.
C17orf59	54785	broad.mit.edu	36	17	8033358	8033358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017622	exon1	c.G826A	p.D276N	.	.	.
ABR	29	broad.mit.edu	36	17	861838	861838	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021962	exon19	c.C2099T	p.A700V	.	.	.
PIK3R5	23533	broad.mit.edu	36	17	8732336	8732336	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014308	exon10	c.G1493A	p.R498H	.	.	.
MEIS3P1	4213	broad.mit.edu	36	17	15631020	15631022	+	In_Frame_Del	DEL	CTT	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	CTT	CTT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
AQP4	361	broad.mit.edu	36	18	22699647	22699647	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001650	exon1	c.G5C	p.S2T	.	.	.
CHST9	83539	broad.mit.edu	36	18	22750349	22750349	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031422	exon6	c.G1204T	p.D402Y	.	.	.
CDH2	1000	broad.mit.edu	36	18	23819571	23819571	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001792	exon12	c.C1894G	p.P632A	.	.	.
DSG1	1828	broad.mit.edu	36	18	27160961	27160961	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001942	exon3	c.G211A	p.A71T	.	.	.
SLC39A6	25800	broad.mit.edu	36	18	31948254	31948254	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099406	exon6	c.C822T	p.G274G	.	.	.
COLEC12	81035	broad.mit.edu	36	18	321693	321693	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130386	exon8	c.C2038A	p.L680M	.	.	.
DCC	1630	broad.mit.edu	36	18	49248335	49248335	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005215	exon25	c.G3693A	p.R1231R	.	.	.
CDH20	28316	broad.mit.edu	36	18	57363328	57363328	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031891	exon9	c.A1619G	p.N540S	.	.	.
BCL2	596	broad.mit.edu	36	18	59136875	59136875	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000633	exon2	c.C5T	p.A2V	.	.	.
SERPINB2	5055	broad.mit.edu	36	18	59709677	59709677	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002575	exon2	c.G19A	p.A7T	.	.	.
DSEL	92126	broad.mit.edu	36	18	63332131	63332131	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032160	exon2	c.T725C	p.L242S	.	.	.
TMX3	54495	broad.mit.edu	36	18	64495220	64495220	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019022	exon16	c.C1295A	p.P432H	.	.	.
TMX3	54495	broad.mit.edu	36	18	64505951	64505951	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019022	exon10	c.C669T	p.I223I	.	.	.
RTTN	25914	broad.mit.edu	36	18	65910336	65910336	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173630	exon30	c.G4133C	p.R1378P	.	.	.
NETO1	81832	broad.mit.edu	36	18	68567279	68567279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138966	exon10	c.C1566A	p.S522R	.	.	.
ARHGAP28	79822	broad.mit.edu	36	18	6866175	6866175	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010000	exon9	c.T781G	p.F261V	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7221888	7221888	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105581	exon1	c.T752A	p.L251H	.	.	.
CTDP1	9150	broad.mit.edu	36	18	75574089	75574089	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_048368	exon7	c.G993A	p.A331A	.	.	.
NDUFB7	4713	broad.mit.edu	36	19	14538654	14538654	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004146	exon2	c.G204A	p.K68K	.	.	.
BRD4	23476	broad.mit.edu	36	19	15210966	15210966	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058243	exon18	c.G3686A	p.R1229H	.	.	.
AKAP8	10270	broad.mit.edu	36	19	15332697	15332697	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005858	exon12	c.C1489T	p.R497W	.	.	.
UNC13A	23025	broad.mit.edu	36	19	17604622	17604622	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080421	exon27	c.G3397A	p.A1133T	.	.	.
RPL18A	6142	broad.mit.edu	36	19	17833210	17833210	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000980	exon2	c.C127T	p.R43C	.	.	.
IL12RB1	3594	broad.mit.edu	36	19	18041425	18041425	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005535	exon10	c.G1120A	p.V374M	.	.	.
ZNF99	7652	broad.mit.edu	36	19	22732983	22732983	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080409	exon5	c.C1295A	p.A432D	.	.	.
GIPC3	126326	broad.mit.edu	36	19	3541070	3541070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133261	exon6	c.C821T	p.A274V	.	.	.
RHPN2	85415	broad.mit.edu	36	19	38174613	38174613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033103	exon13	c.G1600A	p.A534T	.	.	.
PEPD	5184	broad.mit.edu	36	19	38693857	38693857	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000285	exon3	c.C246T	p.C82C	.	.	.
ZNF599	148103	broad.mit.edu	36	19	39941975	39941975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007248	exon4	c.G1571A	p.R524Q	.	.	.
GRAMD1A	57655	broad.mit.edu	36	19	40193093	40193093	+	De_novo_Start_InFrame	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136199	exon5	c.C474T	p.N158N	.	.	.
FFAR2	2867	broad.mit.edu	36	19	40633358	40633358	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005306	exon1	c.G902A	p.R301H	.	.	.
NFKBID	84807	broad.mit.edu	36	19	41078822	41078822	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139239	exon9	c.G506A	p.R169H	.	.	.
ANKRD24	170961	broad.mit.edu	36	19	4161269	4161269	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133475	exon13	c.G959A	p.R320Q	.	.	.
ZNF585B	92285	broad.mit.edu	36	19	42369367	42369367	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152279	exon5	c.C912T	p.G304G	.	.	.
HKR1	284459	broad.mit.edu	36	19	42545459	42545459	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181786	exon6	c.C922T	p.R308X	.	.	.
PLIN4	729359	broad.mit.edu	36	19	4463470	4463470	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080400	exon3	c.C1460T	p.A487V	.	.	.
NUMBL	9253	broad.mit.edu	36	19	45878791	45878791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004756	exon6	c.C411T	p.V137V	.	.	.
CYP2A13	1553	broad.mit.edu	36	19	46286235	46286235	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000766	exon1	c.C19A	p.L7I	.	.	.
ZNF574	64763	broad.mit.edu	36	19	47276142	47276142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022752	exon2	c.G1544A	p.R515H	.	.	.
GSK3A	2931	broad.mit.edu	36	19	47428654	47428654	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019884	exon9	c.G1119A	p.P373P	.	.	.
LYPD3	27076	broad.mit.edu	36	19	48657743	48657743	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014400	exon5	c.C641A	p.S214Y	.	.	.
IRGQ	126298	broad.mit.edu	36	19	48788891	48788891	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007561	exon3	c.C999T	p.G333G	.	.	.
PLAUR	5329	broad.mit.edu	36	19	48852586	48852586	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005377	exon4	c.C357A	p.S119S	.	.	.
ZNF226	7769	broad.mit.edu	36	19	49368193	49368193	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146220	exon5	c.A128G	p.N43S	.	.	.
ERCC1	2067	broad.mit.edu	36	19	50610003	50610003	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001983	exon7	c.G658A	p.A220T	.	.	.
RSPH6A	81492	broad.mit.edu	36	19	50999543	50999543	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030785	exon3	c.G1460A	p.R487H	.	.	.
PGLYRP1	8993	broad.mit.edu	36	19	51214708	51214708	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005091	exon2	c.C325T	p.R109C	.	.	.
MEIS3	56917	broad.mit.edu	36	19	52602192	52602192	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020160	exon10	c.G1088A	p.R363Q	.	.	.
CRX	1406	broad.mit.edu	36	19	53034925	53034925	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000554	exon4	c.C789T	p.P263P	.	.	.
HRC	3270	broad.mit.edu	36	19	54349095	54349095	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002152	exon1	c.G1212T	p.E404D	.	.	.
TSKS	60385	broad.mit.edu	36	19	54934863	54934863	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021733	exon11	c.C1761T	p.G587G	.	.	.
ZNF473	25888	broad.mit.edu	36	19	55234233	55234233	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006656	exon3	c.T13G	p.F5V	.	.	.
MYH14	79784	broad.mit.edu	36	19	55471106	55471106	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077186	exon27	c.C3415T	p.R1139W	.	.	.
POLD1	5424	broad.mit.edu	36	19	55601391	55601391	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002691	exon11	c.G1383T	p.Q461H	.	.	.
FAM71E1	112703	broad.mit.edu	36	19	55670907	55670907	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138411	exon2	c.G355A	p.V119I	.	.	.
LRRC4B	94030	broad.mit.edu	36	19	55714300	55714300	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080457	exon3	c.G482A	p.R161Q	.	.	.
LONP1	9361	broad.mit.edu	36	19	5643093	5643093	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004793	exon18	c.G2830A	p.D944N	.	.	.
IGLON5	402665	broad.mit.edu	36	19	56520421	56520421	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001101372	exon4	c.G401A	p.R134H	.	.	.
IGLON5	402665	broad.mit.edu	36	19	56522807	56522807	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001101372	exon7	c.C777T	p.S259S	.	.	.
SIGLEC10	89790	broad.mit.edu	36	19	56609542	56609542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171157	exon8	c.C1370T	p.A457V	.	.	.
SIGLEC8	27181	broad.mit.edu	36	19	56647520	56647520	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014442	exon7	c.C1425T	p.I475I	.	.	.
MYADM	91663	broad.mit.edu	36	19	59069355	59069355	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001020820	exon3	c.G760A	p.A254T	.	.	.
CACNG7	59284	broad.mit.edu	36	19	59110521	59110521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031896	exon3	c.C374T	p.P125L	.	.	.
LENG1	79165	broad.mit.edu	36	19	59352358	59352358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024316	exon3	c.G530A	p.R177H	.	.	.
LILRB1	10859	broad.mit.edu	36	19	59835798	59835798	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001081639	exon6	c.C733A	p.Q245K	.	.	.
KIR3DL2	3812	broad.mit.edu	36	19	60055307	60055307	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006737	exon3	c.T113C	p.V38A	.	.	.
NLRP8	126205	broad.mit.edu	36	19	61182701	61182701	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176811	exon9	c.C3006T	p.C1002C	.	.	.
ZNF264	9422	broad.mit.edu	36	19	62415732	62415732	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003417	exon4	c.C1455T	p.C485C	.	.	.
ACER1	125981	broad.mit.edu	36	19	6257858	6257858	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133492	exon6	c.T662C	p.M221T	.	.	.
TNFSF14	8740	broad.mit.edu	36	19	6620971	6620971	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003807	exon2	c.G110A	p.R37Q	.	.	.
C3	718	broad.mit.edu	36	19	6663610	6663610	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000064	exon10	c.G1028A	p.R343H	.	.	.
ZNF557	79230	broad.mit.edu	36	19	7026716	7026716	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001044388	exon4	c.G61T	p.G21X	.	.	.
ACTL9	284382	broad.mit.edu	36	19	8669697	8669697	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178525	exon1	c.G355A	p.V119I	.	.	.
OR2Z1	284383	broad.mit.edu	36	19	8703180	8703180	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004699	exon1	c.G790A	p.A264T	.	.	.
MUC16	94025	broad.mit.edu	36	19	8950600	8950600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.G2215A	p.A739T	.	.	.
C19orf66	55337	broad.mit.edu	36	19	10063224	10063224	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018381	exon7	c.561delC	p.L187fs	.	.	.
ZNF486	90649	broad.mit.edu	36	19	20169052	20169052	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_052852	exon4	c.533delA	p.E178fs	.	.	.
HIF3A	64344	broad.mit.edu	36	19	51507698	51507698	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_152795	exon8	c.973delG	p.G325fs	.	.	.
GPR88	54112	broad.mit.edu	36	1	100777485	100777485	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022049	exon2	c.G375A	p.T125T	.	.	.
VAV3	10451	broad.mit.edu	36	1	108308824	108308824	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006113	exon1	c.C191T	p.P64L	.	.	.
PRPF38B	55119	broad.mit.edu	36	1	109043510	109043510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018061	exon6	c.G986A	p.R329H	.	.	.
CLCC1	23155	broad.mit.edu	36	1	109283875	109283875	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048210	exon9	c.G947T	p.G316V	.	.	.
SARS	6301	broad.mit.edu	36	1	109580138	109580138	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006513	exon8	c.A986G	p.Y329C	.	.	.
RBM15	64783	broad.mit.edu	36	1	110684995	110684995	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022768	exon1	c.G1445A	p.R482H	.	.	.
MTOR	2475	broad.mit.edu	36	1	11127317	11127317	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004958	exon34	c.G4847A	p.R1616H	.	.	.
DENND2D	79961	broad.mit.edu	36	1	111538854	111538854	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024901	exon7	c.G663A	p.R221R	.	.	.
CSDE1	7812	broad.mit.edu	36	1	115064780	115064780	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130523	exon17	c.T2000G	p.V667G	.	.	.
FAM46C	54855	broad.mit.edu	36	1	117967707	117967707	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017709	exon2	c.G694A	p.A232T	.	.	.
TBX15	6913	broad.mit.edu	36	1	119229189	119229189	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152380	exon8	c.C1180A	p.H394N	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12291222	12291222	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon27	c.C6587T	p.T2196I	.	.	.
ANKRD35	148741	broad.mit.edu	36	1	144270267	144270267	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144698	exon7	c.G529A	p.A177T	.	.	.
GPR89A	653519	broad.mit.edu	36	1	144528080	144528080	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097613	exon4	c.A45G	p.V15V	.	.	.
HIST2H2BF	440689	broad.mit.edu	36	1	148050478	148050478	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024599	exon1	c.C25G	p.P9A	.	.	.
SF3B4	10262	broad.mit.edu	36	1	148162074	148162074	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005850	exon6	c.G1259A	p.G420D	.	.	.
TARS2	80222	broad.mit.edu	36	1	148736744	148736744	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025150	exon10	c.C1135T	p.Q379X	.	.	.
FLG	2312	broad.mit.edu	36	1	150542523	150542523	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002016	exon3	c.C11463T	p.D3821D	.	.	.
LCE1D	353134	broad.mit.edu	36	1	151037169	151037169	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178352	exon2	c.G275A	p.C92Y	.	.	.
GATAD2B	57459	broad.mit.edu	36	1	152067340	152067340	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020699	exon2	c.G108T	p.G36G	.	.	.
NES	10763	broad.mit.edu	36	1	154906083	154906083	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006617	exon4	c.G4521T	p.L1507F	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155932708	155932708	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052939	exon7	c.G878A	p.R293Q	.	.	.
OR6N1	128372	broad.mit.edu	36	1	157002673	157002673	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005185	exon1	c.G424A	p.A142T	.	.	.
SLAMF9	89886	broad.mit.edu	36	1	158188855	158188855	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033438	exon3	c.G485A	p.G162D	.	.	.
KCNJ10	3766	broad.mit.edu	36	1	158278729	158278729	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002241	exon2	c.C218T	p.A73V	.	.	.
HSPA6	3310	broad.mit.edu	36	1	159761573	159761573	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002155	exon1	c.G501A	p.A167A	.	.	.
UQCRHL	440567	broad.mit.edu	36	1	16006699	16006699	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001089591	exon1	c.C33T	p.T11T	.	.	.
ATF6	22926	broad.mit.edu	36	1	160089670	160089670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007348	exon12	c.G1466A	p.R489K	.	.	.
SPEN	23013	broad.mit.edu	36	1	16075696	16075696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015001	exon3	c.G817A	p.G273S	.	.	.
PBX1	5087	broad.mit.edu	36	1	163057403	163057403	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002585	exon8	c.T1116C	p.D372D	.	.	.
POU2F1	5451	broad.mit.edu	36	1	165609980	165609980	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002697	exon6	c.G414A	p.T138T	.	.	.
BAT2L2	23215	broad.mit.edu	36	1	169768400	169768400	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015172	exon12	c.C1543T	p.R515C	.	.	.
TNN	63923	broad.mit.edu	36	1	173313182	173313182	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022093	exon2	c.G5A	p.S2N	.	.	.
FAM5B	57795	broad.mit.edu	36	1	175511986	175511986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021165	exon6	c.C805T	p.R269C	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184380003	184380003	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon90	c.C14000A	p.A4667E	.	.	.
HMCN1	83872	broad.mit.edu	36	1	184418042	184418042	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031935	exon105	c.G16414T	p.D5472Y	.	.	.
TPR	7175	broad.mit.edu	36	1	184572897	184572897	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon32	c.G4377A	p.S1459S	.	.	.
CDC73	79577	broad.mit.edu	36	1	191360959	191360959	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024529	exon2	c.C226T	p.R76X	 CDC73,parathyroid,NS,Substitution - Nonsense,0 	.	.
CDC73	79577	broad.mit.edu	36	1	191373881	191373881	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024529	exon6	c.G467A	p.R156H	.	.	.
F13B	2165	broad.mit.edu	36	1	195291486	195291486	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001994	exon8	c.T1336C	p.S446P	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657051	195657051	+	Silent	SNP	C	T	T	rs35193230	byFrequency	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon6	c.C1470T	p.G490G	.	.	.
LHX9	56956	broad.mit.edu	36	1	196148296	196148296	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001014434	exon1	c.T12C	p.G4G	.	.	.
ADORA1	134	broad.mit.edu	36	1	201401042	201401042	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048230	exon3	c.G372A	p.A124A	.	.	.
CHI3L1	1116	broad.mit.edu	36	1	201418601	201418601	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001276	exon6	c.A468G	p.E156E	.	.	.
NFASC	23114	broad.mit.edu	36	1	203210490	203210490	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon12	c.C1507T	p.R503C	.	.	.
KIF17	57576	broad.mit.edu	36	1	20863752	20863752	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122819	exon15	c.G2999A	p.R1000Q	.	.	.
KCNH1	3756	broad.mit.edu	36	1	208924004	208924004	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002238	exon11	c.C2131T	p.R711W	.	.	.
DISP1	84976	broad.mit.edu	36	1	221243649	221243649	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C2287T	p.R763C	.	.	.
DISP1	84976	broad.mit.edu	36	1	221245879	221245879	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032890	exon8	c.C4517A	p.P1506H	.	.	.
CELA3A	10136	broad.mit.edu	36	1	22204584	22204584	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005747	exon3	c.A187G	p.I63V	.	.	.
TP53BP2	7159	broad.mit.edu	36	1	222054328	222054328	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031685	exon11	c.C1381T	p.R461C	.	.	.
PARP1	142	broad.mit.edu	36	1	224619414	224619414	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001618	exon19	c.G2570A	p.R857Q	.	.	.
SNAP47	116841	broad.mit.edu	36	1	226002470	226002470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053052	exon2	c.C545T	p.A182V	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226570313	226570313	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon50	c.C13155T	p.N4385N	.	.	.
OBSCN	84033	broad.mit.edu	36	1	226573556	226573556	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052843	exon54	c.G14480A	p.G4827D	.	.	.
URB2	9816	broad.mit.edu	36	1	227849958	227849958	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014777	exon7	c.C3985G	p.L1329V	.	.	.
RYR2	6262	broad.mit.edu	36	1	235825428	235825428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon34	c.C4444T	p.R1482C	.	.	.
RYR2	6262	broad.mit.edu	36	1	235937073	235937073	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon68	c.C9782T	p.A3261V	.	.	.
C1orf100	200159	broad.mit.edu	36	1	242605338	242605338	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012970	exon3	c.A98G	p.Y33C	.	.	.
KIF26B	55083	broad.mit.edu	36	1	243916249	243916249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018012	exon12	c.C3341T	p.A1114V	.	.	.
PANK4	55229	broad.mit.edu	36	1	2442153	2442153	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018216	exon4	c.C475T	p.L159F	.	.	.
ZNF670	93474	broad.mit.edu	36	1	245267722	245267722	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033213	exon4	c.G822A	p.T274T	.	.	.
OR2G2	81470	broad.mit.edu	36	1	245818829	245818829	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001915	exon1	c.G545A	p.C182Y	.	.	.
OR11L1	391189	broad.mit.edu	36	1	246071575	246071575	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001959	exon1	c.G247T	p.A83S	.	.	.
OR2M3	127062	broad.mit.edu	36	1	246433696	246433696	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004689	exon1	c.G704A	p.R235H	.	.	.
OR2T11	127077	broad.mit.edu	36	1	246856772	246856772	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001964	exon1	c.G281A	p.C94Y	.	.	.
SEPN1	57190	broad.mit.edu	36	1	26008126	26008126	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020451	exon6	c.G770A	p.S257N	.	.	.
LIN28A	79727	broad.mit.edu	36	1	26610591	26610591	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024674	exon2	c.C159T	p.F53F	.	.	.
WDTC1	23038	broad.mit.edu	36	1	27460165	27460165	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015023	exon2	c.C33T	p.I11I	.	.	.
RCC1	1104	broad.mit.edu	36	1	28731332	28731332	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001269	exon4	c.G324T	p.S108S	.	.	.
CSMD2	114784	broad.mit.edu	36	1	34156361	34156361	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon5	c.G721A	p.A241T	.	.	.
SFPQ	6421	broad.mit.edu	36	1	35426235	35426235	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005066	exon7	c.C1741T	p.R581C	.	.	.
ZMYM4	9202	broad.mit.edu	36	1	35608230	35608230	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005095	exon6	c.G854A	p.G285D	.	.	.
PSMB2	5690	broad.mit.edu	36	1	35869463	35869463	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199779	exon3	c.G209T	p.R70L	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36157776	36157776	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012199	exon19	c.G2555A	p.R852H	.	.	.
EIF2C3	192669	broad.mit.edu	36	1	36247767	36247767	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177422	exon7	c.G432T	p.E144D	.	.	.
STK40	83931	broad.mit.edu	36	1	36593534	36593534	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032017	exon6	c.C430A	p.L144I	.	.	.
C1orf174	339448	broad.mit.edu	36	1	3799394	3799394	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207356	exon2	c.G42A	p.A14A	.	.	.
MACF1	23499	broad.mit.edu	36	1	39555632	39555632	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012090	exon30	c.C3763T	p.R1255C	.	.	.
MACF1	23499	broad.mit.edu	36	1	39575454	39575454	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon2	c.G5399T	p.R1800L	.	.	.
NT5C1A	84618	broad.mit.edu	36	1	39901650	39901650	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032526	exon4	c.G477A	p.P159P	.	.	.
RLF	6018	broad.mit.edu	36	1	40476003	40476003	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012421	exon8	c.C3042A	p.P1014P	.	.	.
CLDN19	149461	broad.mit.edu	36	1	42976786	42976786	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148960	exon2	c.C281T	p.A94V	.	.	.
EIF2B3	8891	broad.mit.edu	36	1	45179777	45179777	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166588	exon4	c.A442G	p.K148E	.	.	.
NASP	4678	broad.mit.edu	36	1	45853303	45853303	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195193	exon8	c.G1506A	p.Q502Q	.	.	.
CCDC17	149483	broad.mit.edu	36	1	45860603	45860603	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114938	exon7	c.G864T	p.R288S	.	.	.
MAST2	23139	broad.mit.edu	36	1	46267111	46267111	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon18	c.A2137C	p.I713L	.	.	.
CYP4A11	1579	broad.mit.edu	36	1	47168383	47168383	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000778	exon12	c.C1551T	p.D517D	.	.	.
SPATA6	54558	broad.mit.edu	36	1	48637716	48637716	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019073	exon7	c.G674A	p.R225H	.	.	.
EPS15	2060	broad.mit.edu	36	1	51686307	51686307	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001981	exon9	c.C650T	p.T217M	.	.	.
C1orf177	163747	broad.mit.edu	36	1	55050324	55050324	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001110533	exon6	c.C636T	p.P212P	.	.	.
HOOK1	51361	broad.mit.edu	36	1	60111128	60111128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015888	exon22	c.C2090T	p.A697V	.	.	.
FPGT	8790	broad.mit.edu	36	1	74443893	74443893	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199328	exon5	c.C812T	p.A271V	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74811023	74811023	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon14	c.G2959T	p.V987F	.	.	.
PER3	8863	broad.mit.edu	36	1	7770770	7770770	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016831	exon4	c.C469T	p.R157C	.	.	.
LPHN2	23266	broad.mit.edu	36	1	82189365	82189365	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012302	exon7	c.C1568A	p.S523X	.	.	.
RPF1	80135	broad.mit.edu	36	1	84721226	84721226	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025065	exon3	c.G326A	p.R109Q	.	.	.
MCOLN3	55283	broad.mit.edu	36	1	85260406	85260406	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018298	exon11	c.G1255A	p.A419T	.	.	.
BCAR3	8412	broad.mit.edu	36	1	93912929	93912929	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003567	exon2	c.G146A	p.G49D	.	.	.
CLSTN1	22883	broad.mit.edu	36	1	9723792	9723792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014944	exon9	c.C1436T	p.P479L	.	.	.
SNX7	51375	broad.mit.edu	36	1	98923063	98923063	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152238	exon2	c.C215A	p.P72H	.	.	.
HCK	3055	broad.mit.edu	36	20	30103890	30103891	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002110	exon1	c.2_3insG	p.L1fs	.	.	.
ESF1	51575	broad.mit.edu	36	20	13711614	13711614	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016649	exon2	c.G173A	p.R58H	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308626	16308626	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon19	c.C2021T	p.A674V	.	.	.
CRNKL1	51340	broad.mit.edu	36	20	19971121	19971121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016652	exon9	c.C1495T	p.R499C	.	.	.
TMC2	117532	broad.mit.edu	36	20	2545798	2545798	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080751	exon16	c.C2021T	p.A674V	.	.	.
C20orf185	359710	broad.mit.edu	36	20	31121367	31121367	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182658	exon11	c.C1162T	p.R388C	.	.	.
SNTA1	6640	broad.mit.edu	36	20	31463789	31463789	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003098	exon5	c.C1014T	p.A338A	.	.	.
ZNF341	84905	broad.mit.edu	36	20	31842787	31842787	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032819	exon15	c.G2347A	p.G783S	.	.	.
EDEM2	55741	broad.mit.edu	36	20	33198362	33198362	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018217	exon2	c.A145C	p.S49R	.	.	.
FAM83C	128876	broad.mit.edu	36	20	33338098	33338098	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178468	exon4	c.G1898A	p.S633N	.	.	.
RBM12	10137	broad.mit.edu	36	20	33706387	33706387	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152838	exon3	c.A272G	p.E91G	.	.	.
RALGAPB	57148	broad.mit.edu	36	20	36579842	36579842	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020336	exon9	c.T1202C	p.V401A	.	.	.
SLC32A1	140679	broad.mit.edu	36	20	36787111	36787111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080552	exon1	c.C330T	p.G110G	.	.	.
CSNK2A1	1457	broad.mit.edu	36	20	417335	417335	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001895	exon10	c.G811T	p.D271Y	.	.	.
TNNC2	7125	broad.mit.edu	36	20	43886148	43886148	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003279	exon5	c.G340A	p.E114K	.	.	.
CSE1L	1434	broad.mit.edu	36	20	47116172	47116172	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001316	exon4	c.C265T	p.R89X	.	.	.
RASSF2	9770	broad.mit.edu	36	20	4724521	4724521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170774	exon4	c.G227A	p.R76H	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50138579	50138579	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199427	exon8	c.G987A	p.P329P	.	.	.
C20orf30	29058	broad.mit.edu	36	20	5038082	5038082	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009923	exon3	c.C184T	p.R62C	.	.	.
APCDD1L	164284	broad.mit.edu	36	20	56479194	56479194	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_153360	exon2	c.C65T	p.A22V	.	.	.
TRMT6	51605	broad.mit.edu	36	20	5870605	5870605	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015939	exon8	c.C1104T	p.N368N	.	.	.
MCM8	84515	broad.mit.edu	36	20	5883882	5883882	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032485	exon5	c.T471G	p.G157G	.	.	.
LTN1	26046	broad.mit.edu	36	21	29281008	29281008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015565	exon2	c.C299T	p.A100V	.	.	.
CLDN17	26285	broad.mit.edu	36	21	30460756	30460756	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012131	exon1	c.C51T	p.G17G	.	.	.
KRTAP19-2	337969	broad.mit.edu	36	21	30781482	30781482	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181608	exon1	c.C57T	p.C19C	.	.	.
PDE9A	5152	broad.mit.edu	36	21	43025257	43025257	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001574	exon4	c.G193T	p.E65X	.	.	.
TRPM2	7226	broad.mit.edu	36	21	44611131	44611131	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003307	exon4	c.C490T	p.L164L	.	.	.
COL18A1	80781	broad.mit.edu	36	21	45713030	45713030	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030582	exon2	c.A1093C	p.R365R	.	.	.
FTCD	10841	broad.mit.edu	36	21	46395938	46395938	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_006657	exon5	c.G598A	p.A200T	.	.	.
DIP2A	23181	broad.mit.edu	36	21	46798567	46798567	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146114	exon24	c.G2896A	p.A966T	.	.	.
TPTE	7179	broad.mit.edu	36	21	9973251	9973251	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199259	exon9	c.C278T	p.A93V	.	.	.
NCAM2	4685	broad.mit.edu	36	21	21704599	21704599	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004540	exon10	c.1330delA	p.K444fs	.	.	.
TXNRD2	10587	broad.mit.edu	36	22	18282744	18282744	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006440	exon7	c.C584A	p.P195H	.	.	.
PI4KA	5297	broad.mit.edu	36	22	19477503	19477503	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_058004	exon19	c.T2132C	p.V711A	.	.	.
ZNF280B	140883	broad.mit.edu	36	22	21172926	21172926	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080764	exon4	c.T798G	p.S266R	.	.	.
GNAZ	2781	broad.mit.edu	36	22	21795358	21795358	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002073	exon3	c.A808G	p.N270D	.	.	.
ZNF70	7621	broad.mit.edu	36	22	22416368	22416368	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021916	exon2	c.C960T	p.S320S	.	.	.
SUSD2	56241	broad.mit.edu	36	22	22914248	22914248	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019601	exon14	c.G2397A	p.A799A	.	.	.
SPECC1L	23384	broad.mit.edu	36	22	23137589	23137589	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145468	exon14	c.A3121G	p.N1041D	.	.	.
ADORA2A	135	broad.mit.edu	36	22	23166791	23166791	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000675	exon3	c.G573A	p.L191L	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24503670	24503670	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon8	c.G1990A	p.A664T	.	.	.
SF3A1	10291	broad.mit.edu	36	22	29072466	29072466	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005409	exon3	c.C228T	p.I76I	.	.	.
SFI1	9814	broad.mit.edu	36	22	30330320	30330320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014775	exon18	c.G1814A	p.R605Q	.	.	.
DDX17	10521	broad.mit.edu	36	22	37212229	37212229	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098504	exon13	c.G1853A	p.G618D	.	.	.
APOBEC3G	60489	broad.mit.edu	36	22	37812471	37812471	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021822	exon6	c.G977A	p.R326H	.	.	.
SMCR7L	54471	broad.mit.edu	36	22	38239873	38239873	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019008	exon6	c.G991A	p.A331T	.	.	.
MEI1	150365	broad.mit.edu	36	22	40507287	40507287	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152513	exon23	c.T2869C	p.S957P	.	.	.
POLDIP3	84271	broad.mit.edu	36	22	41318017	41318017	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178136	exon6	c.T822G	p.C274W	.	.	.
PRR5-ARHGAP8	553158	broad.mit.edu	36	22	43589244	43589244	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181334	exon8	c.G694A	p.V232M	.	.	.
CELSR1	9620	broad.mit.edu	36	22	45168795	45168795	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014246	exon14	c.T5872G	p.W1958G	.	.	.
ZBED4	9889	broad.mit.edu	36	22	48663774	48663774	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014838	exon2	c.A460G	p.T154A	.	.	.
PLXNB2	23654	broad.mit.edu	36	22	49063640	49063640	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012401	exon16	c.2782delG	p.V928fs	.	.	.
MAP4K4	9448	broad.mit.edu	36	2	101814633	101814633	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145687	exon7	c.C527A	p.A176D	.	.	.
SLC9A2	6549	broad.mit.edu	36	2	102640646	102640646	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003048	exon2	c.C481A	p.P161T	.	.	.
EDAR	10913	broad.mit.edu	36	2	108880019	108880019	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022336	exon12	c.C1123T	p.R375C	.	.	.
MERTK	10461	broad.mit.edu	36	2	112495533	112495533	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006343	exon17	c.C2253T	p.G751G	.	.	.
CHCHD5	84269	broad.mit.edu	36	2	113060078	113060078	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032309	exon2	c.G59A	p.G20D	.	.	.
INSIG2	51141	broad.mit.edu	36	2	118570646	118570646	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016133	exon2	c.G44A	p.G15D	.	.	.
SMPD4	55627	broad.mit.edu	36	2	130629235	130629235	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017951	exon15	c.C1474T	p.L492F	.	.	.
CXCR4	7852	broad.mit.edu	36	2	136589265	136589265	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003467	exon2	c.C703T	p.R235C	.	.	.
THSD7B	80731	broad.mit.edu	36	2	137530654	137530654	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080427	exon2	c.C241T	p.H81Y	.	.	.
HNMT	3176	broad.mit.edu	36	2	138455322	138455322	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024075	exon3	c.G257A	p.R86H	.	.	.
LRP1B	53353	broad.mit.edu	36	2	141015093	141015093	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon45	c.T7432C	p.L2478L	.	.	.
NEB	4703	broad.mit.edu	36	2	152055160	152055160	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon180	c.C25269A	p.S8423R	.	.	.
NEB	4703	broad.mit.edu	36	2	152116559	152116559	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon129	c.C19883T	p.A6628V	.	.	.
NEB	4703	broad.mit.edu	36	2	152208821	152208821	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon57	c.C7713T	p.D2571D	.	.	.
NEB	4703	broad.mit.edu	36	2	152237176	152237176	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon37	c.G4252A	p.A1418T	.	.	.
ACVR1	90	broad.mit.edu	36	2	158302408	158302408	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111067	exon11	c.G1411T	p.A471S	.	.	.
GRB14	2888	broad.mit.edu	36	2	165073604	165073604	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004490	exon7	c.C821T	p.P274L	.	.	.
SCN9A	6335	broad.mit.edu	36	2	166792459	166792459	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002977	exon23	c.G4194A	p.T1398T	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167815542	167815542	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.C8728T	p.R2910X	.	.	.
STK39	27347	broad.mit.edu	36	2	168639922	168639922	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013233	exon11	c.T1155C	p.S385S	.	.	.
STK39	27347	broad.mit.edu	36	2	168746824	168746824	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013233	exon2	c.T231G	p.V77V	.	.	.
LRP2	4036	broad.mit.edu	36	2	169791272	169791272	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon32	c.G5300A	p.S1767N	.	.	.
LRP2	4036	broad.mit.edu	36	2	169845271	169845271	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004525	exon11	c.C1176T	p.G392G	.	.	.
PPIG	9360	broad.mit.edu	36	2	170173513	170173513	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004792	exon7	c.A376G	p.I126V	.	.	.
DYNC1I2	1781	broad.mit.edu	36	2	172290801	172290801	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001378	exon9	c.T734G	p.F245C	.	.	.
TTN	7273	broad.mit.edu	36	2	179132988	179132988	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G58921A	p.E19641K	.	.	.
TTN	7273	broad.mit.edu	36	2	179133986	179133986	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.G57923A	p.R19308K	.	.	.
TTN	7273	broad.mit.edu	36	2	179154901	179154901	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon143	c.C39245T	p.P13082L	.	.	.
MFSD6	54842	broad.mit.edu	36	2	191009379	191009379	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017694	exon3	c.C379T	p.R127C	.	.	.
MFSD6	54842	broad.mit.edu	36	2	191009642	191009642	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017694	exon3	c.G642T	p.L214F	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196597409	196597409	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon8	c.C732A	p.A244A	.	.	.
CCNYL1	151195	broad.mit.edu	36	2	208320179	208320179	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152523	exon9	c.A593G	p.D198G	.	.	.
IDH1	3417	broad.mit.edu	36	2	208824424	208824424	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005896	exon3	c.C97T	p.P33S	.	.	.
PTH2R	5746	broad.mit.edu	36	2	209062086	209062086	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005048	exon11	c.G1181A	p.R394H	.	.	.
MAP2	4133	broad.mit.edu	36	2	210269210	210269210	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon7	c.A4071T	p.E1357D	.	.	.
APOB	338	broad.mit.edu	36	2	21106079	21106079	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000384	exon12	c.G1554A	p.K518K	.	.	.
STK36	27148	broad.mit.edu	36	2	219246608	219246608	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015690	exon3	c.T101C	p.F34S	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220205918	220205918	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005070	exon9	c.A1220C	p.D407A	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220207541	220207541	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005070	exon12	c.C1717T	p.R573C	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220212600	220212600	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005070	exon20	c.C3176T	p.A1059V	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228554771	228554771	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon12	c.A5009G	p.D1670G	.	.	.
DNER	92737	broad.mit.edu	36	2	230020320	230020320	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139072	exon8	c.C1442T	p.T481M	.	.	.
DNER	92737	broad.mit.edu	36	2	230158842	230158842	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139072	exon4	c.G823A	p.A275T	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230402211	230402211	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon7	c.T1248C	p.F416F	.	.	.
CHRND	1144	broad.mit.edu	36	2	233108255	233108255	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000751	exon12	c.C1543T	p.R515C	.	.	.
GIGYF2	26058	broad.mit.edu	36	2	233329249	233329249	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001103148	exon5	c.G340A	p.V114M	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237933527	237933527	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon14	c.G4404A	p.P1468P	.	.	.
COL6A3	1293	broad.mit.edu	36	2	237954363	237954363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057166	exon3	c.G610A	p.A204T	.	.	.
RAB17	64284	broad.mit.edu	36	2	238148409	238148409	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022449	exon6	c.G631A	p.A211T	.	.	.
PASK	23178	broad.mit.edu	36	2	241714956	241714956	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015148	exon10	c.G2047A	p.V683I	.	.	.
FARP2	9855	broad.mit.edu	36	2	242051528	242051528	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014808	exon16	c.C1783T	p.R595C	.	.	.
OTOF	9381	broad.mit.edu	36	2	26538502	26538502	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_194323	exon25	c.C2943G	p.D981E	.	.	.
CAD	790	broad.mit.edu	36	2	27309893	27309893	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004341	exon20	c.G3201T	p.E1067D	.	.	.
PLB1	151056	broad.mit.edu	36	2	28666048	28666048	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170585	exon27	c.A1890G	p.E630E	.	.	.
FAM179A	165186	broad.mit.edu	36	2	29103228	29103228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199280	exon14	c.G1859A	p.R620Q	.	.	.
C2orf71	388939	broad.mit.edu	36	2	29147646	29147646	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029883	exon1	c.C2986A	p.P996T	.	.	.
CRIM1	51232	broad.mit.edu	36	2	36521932	36521932	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016441	exon3	c.G533A	p.R178H	.	.	.
SOS1	6654	broad.mit.edu	36	2	39103288	39103288	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005633	exon10	c.G1785T	p.K595N	.	.	.
SLC8A1	6546	broad.mit.edu	36	2	40220306	40220306	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001112800	exon8	c.G2269A	p.D757N	.	.	.
SLC3A1	6519	broad.mit.edu	36	2	44384816	44384816	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000341	exon7	c.T1167C	p.S389S	.	.	.
TTC7A	57217	broad.mit.edu	36	2	47154558	47154558	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020458	exon20	c.G2569A	p.E857K	.	.	.
MSH2	4436	broad.mit.edu	36	2	47497037	47497037	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000251	exon6	c.G1041A	p.K347K	.	.	.
MSH6	2956	broad.mit.edu	36	2	47879708	47879708	+	Missense_Mutation	SNP	G	A	A	rs63750440	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000179	exon4	c.G1082A	p.R361H	.	.	.
ACTG2	72	broad.mit.edu	36	2	73994200	73994200	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001615	exon6	c.C532T	p.R178C	.	.	.
SLC4A5	57835	broad.mit.edu	36	2	74308184	74308184	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021196	exon22	c.T2932C	p.S978P	.	.	.
MRPL53	116540	broad.mit.edu	36	2	74553235	74553235	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053050	exon1	c.T61A	p.C21S	.	.	.
HTRA2	27429	broad.mit.edu	36	2	74610832	74610832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013247	exon1	c.G191A	p.G64E	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86162243	86162243	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon8	c.G915A	p.P305P	.	.	.
POLR1A	25885	broad.mit.edu	36	2	86169299	86169299	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015425	exon6	c.G631A	p.G211R	.	.	.
ITPRIPL1	150771	broad.mit.edu	36	2	96356826	96356826	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163523	exon2	c.C706A	p.P236T	.	.	.
SLC6A11	6538	broad.mit.edu	36	3	10833058	10833058	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014229	exon1	c.G108A	p.A36A	.	.	.
MORC1	27136	broad.mit.edu	36	3	110258978	110258978	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014429	exon13	c.C1077T	p.N359N	.	.	.
ATG7	10533	broad.mit.edu	36	3	11329804	11329804	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006395	exon6	c.T438C	p.Y146Y	.	.	.
CD200R1L	344807	broad.mit.edu	36	3	114028548	114028548	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008784	exon4	c.T661A	p.S221T	.	.	.
SIDT1	54847	broad.mit.edu	36	3	114803168	114803168	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017699	exon11	c.A1089G	p.T363T	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123195443	123195443	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_175924	exon6	c.C711T	p.I237I	.	.	.
PDIA5	10954	broad.mit.edu	36	3	124325666	124325666	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006810	exon9	c.C673T	p.R225C	.	.	.
MYLK	4638	broad.mit.edu	36	3	124938921	124938921	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053025	exon8	c.A748G	p.I250V	.	.	.
PLXNA1	5361	broad.mit.edu	36	3	128223663	128223663	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032242	exon21	c.C4084T	p.L1362L	.	.	.
RHO	6010	broad.mit.edu	36	3	130733853	130733853	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000539	exon3	c.C600T	p.N200N	.	.	.
COL6A6	131873	broad.mit.edu	36	3	131828046	131828046	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102608	exon24	c.G4906T	p.G1636X	.	.	.
ASTE1	28990	broad.mit.edu	36	3	132226541	132226541	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014065	exon3	c.C300A	p.I100I	.	.	.
CCRL1	51554	broad.mit.edu	36	3	133802805	133802805	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178445	exon1	c.G874A	p.A292T	.	.	.
C3orf36	80111	broad.mit.edu	36	3	135129992	135129992	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025041	exon1	c.G346A	p.A116T	.	.	.
STAG1	10274	broad.mit.edu	36	3	137805888	137805888	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005862	exon4	c.C250T	p.P84S	.	.	.
TRIM42	287015	broad.mit.edu	36	3	141902492	141902492	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152616	exon5	c.C2158T	p.Q720X	.	.	.
SLC9A9	285195	broad.mit.edu	36	3	144853856	144853856	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173653	exon6	c.A686G	p.D229G	.	.	.
MED12L	116931	broad.mit.edu	36	3	152385811	152385811	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053002	exon11	c.C1499T	p.A500V	.	.	.
METTL6	131965	broad.mit.edu	36	3	15432359	15432359	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152396	exon4	c.A455G	p.D152G	.	.	.
NLGN1	22871	broad.mit.edu	36	3	175475974	175475974	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014932	exon5	c.T822G	p.H274Q	.	.	.
ZMAT3	64393	broad.mit.edu	36	3	180267976	180267976	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152240	exon3	c.G259T	p.A87S	.	.	.
KLHL6	89857	broad.mit.edu	36	3	184755854	184755854	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130446	exon1	c.C282A	p.S94R	.	.	.
FAM131A	131408	broad.mit.edu	36	3	185545182	185545182	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171093	exon6	c.C576T	p.G192G	.	.	.
MAP3K13	9175	broad.mit.edu	36	3	186667363	186667363	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004721	exon10	c.C1561T	p.R521C	.	.	.
BCL6	604	broad.mit.edu	36	3	188927334	188927334	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130845	exon7	c.G1587A	p.E529E	.	.	.
CLDN16	10686	broad.mit.edu	36	3	191608802	191608802	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006580	exon4	c.C598A	p.P200T	.	.	.
KCNH8	131096	broad.mit.edu	36	3	19473295	19473295	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144633	exon11	c.A1857G	p.S619S	.	.	.
C3orf43	255798	broad.mit.edu	36	3	197720916	197720916	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077657	exon2	c.G72A	p.A24A	.	.	.
MFI2	4241	broad.mit.edu	36	3	198228385	198228385	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005929	exon7	c.C886T	p.L296F	.	.	.
EFHB	151651	broad.mit.edu	36	3	19900956	19900956	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144715	exon11	c.T2089C	p.Y697H	.	.	.
LMLN	89782	broad.mit.edu	36	3	199191644	199191644	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033029	exon6	c.G600A	p.V200V	.	.	.
PLCD1	5333	broad.mit.edu	36	3	38036763	38036763	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006225	exon2	c.G119A	p.R40H	.	.	.
SCN5A	6331	broad.mit.edu	36	3	38638942	38638942	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099405	exon4	c.C435T	p.C145C	.	.	.
SLC25A38	54977	broad.mit.edu	36	3	39406022	39406022	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017875	exon2	c.C102T	p.G34G	.	.	.
VIPR1	7433	broad.mit.edu	36	3	42548789	42548789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004624	exon10	c.C970T	p.R324W	.	.	.
NBEAL2	23218	broad.mit.edu	36	3	47021048	47021048	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_015175	exon38	c.G6258A	p.A2086A	.	.	.
MAP4	4134	broad.mit.edu	36	3	47933470	47933470	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134364	exon7	c.T851C	p.L284S	.	.	.
NCKIPSD	51517	broad.mit.edu	36	3	48687040	48687040	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016453	exon13	c.C2110T	p.R704C	.	.	.
USP4	7375	broad.mit.edu	36	3	49318178	49318178	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199443	exon8	c.G961A	p.A321T	.	.	.
SEMA3G	56920	broad.mit.edu	36	3	52450446	52450446	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020163	exon7	c.C687T	p.A229A	.	.	.
ITIH1	3697	broad.mit.edu	36	3	52794233	52794233	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166434	exon10	c.G1115A	p.R372H	.	.	.
IL17RB	55540	broad.mit.edu	36	3	53867863	53867863	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018725	exon9	c.C825T	p.G275G	.	.	.
FOXP1	27086	broad.mit.edu	36	3	71330117	71330117	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032682	exon6	c.C106T	p.R36W	.	.	.
LMCD1	29995	broad.mit.edu	36	3	8582140	8582140	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014583	exon5	c.C746T	p.A249V	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89551107	89551107	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon11	c.G1951A	p.A651T	.	.	.
GABRR3	200959	broad.mit.edu	36	3	99188405	99188405	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105580	exon9	c.T1216G	p.F406V	.	.	.
OR5H1	26341	broad.mit.edu	36	3	99334821	99334821	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005338	exon1	c.T590G	p.L197R	.	.	.
AGXT2L1	64850	broad.mit.edu	36	4	109900881	109900881	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146590	exon2	c.T87A	p.D29E	.	.	.
PDE5A	8654	broad.mit.edu	36	4	120707706	120707706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033437	exon4	c.C717T	p.N239N	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123448595	123448595	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon56	c.T9883A	p.W3295R	.	.	.
FAT4	79633	broad.mit.edu	36	4	126457023	126457023	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon1	c.T7G	p.L3V	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134291857	134291857	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.C1112T	p.A371V	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138669144	138669144	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon3	c.T2678C	p.I893T	.	.	.
PCDH18	54510	broad.mit.edu	36	4	138670407	138670407	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019035	exon1	c.G2286A	p.V762V	.	.	.
FBXW7	55294	broad.mit.edu	36	4	153471357	153471357	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018315	exon6	c.C859T	p.R287X	 FBXW7,central_nervous_system,brain,Substitution - Nonsense,0 	.	.
DCHS2	54798	broad.mit.edu	36	4	155473755	155473755	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142552	exon5	c.G3055A	p.A1019T	.	.	.
GUCY1A3	2982	broad.mit.edu	36	4	156851607	156851607	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130682	exon6	c.G840A	p.S280S	.	.	.
FAM198B	51313	broad.mit.edu	36	4	159311850	159311850	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128424	exon2	c.C128T	p.A43V	.	.	.
ETFDH	2110	broad.mit.edu	36	4	159821156	159821156	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004453	exon2	c.G122T	p.R41L	.	.	.
CPE	1363	broad.mit.edu	36	4	166608381	166608381	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001873	exon3	c.A596G	p.Y199C	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183958016	183958016	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon27	c.A7618G	p.T2540A	.	.	.
LRP2BP	55805	broad.mit.edu	36	4	186532375	186532375	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018409	exon5	c.G487A	p.A163T	.	.	.
CCDC149	91050	broad.mit.edu	36	4	24448942	24448942	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173463	exon6	c.C423T	p.G141G	.	.	.
SEL1L3	23231	broad.mit.edu	36	4	25432721	25432721	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015187	exon7	c.G1285A	p.A429T	.	.	.
RFC1	5981	broad.mit.edu	36	4	38998480	38998480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon9	c.C1013T	p.S338L	.	.	.
ATP10D	57205	broad.mit.edu	36	4	47232721	47232721	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020453	exon7	c.A929C	p.K310T	.	.	.
LNX1	84708	broad.mit.edu	36	4	54039576	54039576	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126328	exon8	c.G1576A	p.A526T	.	.	.
KDR	3791	broad.mit.edu	36	4	55663390	55663390	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002253	exon14	c.C2030T	p.T677M	.	.	.
JAKMIP1	152789	broad.mit.edu	36	4	6134325	6134325	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144720	exon6	c.G1013A	p.R338Q	.	.	.
LPHN3	23284	broad.mit.edu	36	4	62592849	62592849	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015236	exon22	c.G3597A	p.A1199A	.	.	.
TECRL	253017	broad.mit.edu	36	4	64871024	64871024	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010874	exon4	c.G413T	p.G138V	.	.	.
UBA6	55236	broad.mit.edu	36	4	68197524	68197524	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018227	exon14	c.C1105T	p.P369S	.	.	.
AMBN	258	broad.mit.edu	36	4	71506781	71506781	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016519	exon13	c.C1089T	p.G363G	.	.	.
ABCG2	9429	broad.mit.edu	36	4	89272030	89272030	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004827	exon4	c.T327C	p.N109N	.	.	.
SNCA	6622	broad.mit.edu	36	4	90962477	90962477	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146054	exon4	c.G249T	p.E83D	.	.	.
CCT5	22948	broad.mit.edu	36	5	10314684	10314684	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012073	exon8	c.G1006A	p.A336T	.	.	.
TSLP	85480	broad.mit.edu	36	5	110439636	110439636	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033035	exon4	c.C445T	p.R149C	.	.	.
YTHDC2	64848	broad.mit.edu	36	5	112902744	112902744	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022828	exon8	c.G1177T	p.E393X	.	.	.
DTWD2	285605	broad.mit.edu	36	5	118204671	118204671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173666	exon6	c.G737A	p.R246H	.	.	.
SLC27A6	28965	broad.mit.edu	36	5	128348862	128348862	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017372	exon2	c.C619T	p.R207C	.	.	.
CDC25C	995	broad.mit.edu	36	5	137693171	137693171	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001790	exon3	c.C259A	p.L87I	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13770565	13770565	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon73	c.G12564C	p.V4188V	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13774259	13774259	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon71	c.G12129A	p.T4043T	.	.	.
DNAH5	1767	broad.mit.edu	36	5	13924054	13924054	+	Missense_Mutation	SNP	C	T	T	rs73055857	by1000genomes	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001369	exon24	c.G3656A	p.R1219H	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140411432	140411432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.C193T	p.R65W	.	.	.
PCDHB7	56129	broad.mit.edu	36	5	140534218	140534218	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018940	exon1	c.G1618A	p.A540T	.	.	.
PCDHB10	56126	broad.mit.edu	36	5	140554010	140554010	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018930	exon1	c.C1701T	p.N567N	.	.	.
PCDHB11	56125	broad.mit.edu	36	5	140560001	140560001	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018931	exon1	c.C470T	p.A157V	.	.	.
PCDHGA1	56114	broad.mit.edu	36	5	140692526	140692526	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031993	exon1	c.G2091A	p.A697A	.	.	.
PCDHGA7	56108	broad.mit.edu	36	5	140744634	140744634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032087	exon1	c.G1984A	p.V662M	.	.	.
PCDHGA12	26025	broad.mit.edu	36	5	140792111	140792111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032094	exon1	c.C1601T	p.A534V	.	.	.
FCHSD1	89848	broad.mit.edu	36	5	141009198	141009198	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033449	exon5	c.G323A	p.R108H	.	.	.
TRIO	7204	broad.mit.edu	36	5	14340023	14340023	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007118	exon4	c.C391T	p.R131C	.	.	.
TCERG1	10915	broad.mit.edu	36	5	145831284	145831284	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040006	exon8	c.C1490A	p.A497D	.	.	.
ARHGEF37	389337	broad.mit.edu	36	5	148976480	148976480	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001669	exon5	c.G616A	p.V206M	.	.	.
NMUR2	56923	broad.mit.edu	36	5	151764634	151764634	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020167	exon1	c.G234A	p.T78T	.	.	.
SGCD	6444	broad.mit.edu	36	5	156117203	156117203	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172244	exon8	c.G609T	p.E203D	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156742905	156742905	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037333	exon28	c.T3167C	p.L1056P	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167574809	167574809	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon21	c.C4005T	p.C1335C	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169405431	169405431	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon39	c.C3910T	p.L1304L	.	.	.
BOD1	91272	broad.mit.edu	36	5	172968879	172968879	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138369	exon3	c.A527G	p.D176G	.	.	.
SFXN1	94081	broad.mit.edu	36	5	174869724	174869724	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022754	exon4	c.G342A	p.T114T	.	.	.
PROP1	5626	broad.mit.edu	36	5	177355521	177355521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006261	exon1	c.G20A	p.R7H	.	.	.
GRM6	2916	broad.mit.edu	36	5	178348953	178348953	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000843	exon5	c.G1072A	p.A358T	.	.	.
ADAMTS2	9509	broad.mit.edu	36	5	178481295	178481295	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014244	exon21	c.G3151A	p.D1051N	.	.	.
CDH6	1004	broad.mit.edu	36	5	31358868	31358868	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004932	exon12	c.G2069T	p.R690M	.	.	.
ADAMTS12	81792	broad.mit.edu	36	5	33624639	33624639	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030955	exon18	c.C2687T	p.A896V	.	.	.
TTC23L	153657	broad.mit.edu	36	5	34902912	34902912	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144725	exon7	c.C821A	p.A274D	.	.	.
LMBRD2	92255	broad.mit.edu	36	5	36158189	36158189	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007527	exon9	c.C1070A	p.S357X	.	.	.
PRKAA1	5562	broad.mit.edu	36	5	40813435	40813435	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006251	exon2	c.T138C	p.H46H	.	.	.
AHRR	57491	broad.mit.edu	36	5	487432	487432	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020731	exon12	c.C1643T	p.T548M	.	.	.
PARP8	79668	broad.mit.edu	36	5	50120152	50120152	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178055	exon11	c.C709T	p.R237X	.	.	.
SLC9A3	6550	broad.mit.edu	36	5	529449	529449	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004174	exon13	c.C1935T	p.D645D	.	.	.
SNX18	112574	broad.mit.edu	36	5	53874895	53874895	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102575	exon2	c.T1751C	p.F584S	.	.	.
HTR1A	3350	broad.mit.edu	36	5	63292442	63292442	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000524	exon1	c.C861T	p.G287G	.	.	.
TRIM23	373	broad.mit.edu	36	5	64945772	64945772	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033228	exon3	c.A275T	p.N92I	.	.	.
ENC1	8507	broad.mit.edu	36	5	73966485	73966485	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003633	exon2	c.C1582T	p.R528C	.	.	.
S100Z	170591	broad.mit.edu	36	5	76207025	76207025	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130772	exon3	c.C85A	p.L29I	.	.	.
AGGF1	55109	broad.mit.edu	36	5	76394681	76394681	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018046	exon14	c.C1993T	p.P665S	.	.	.
ADCY2	108	broad.mit.edu	36	5	7870087	7870087	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020546	exon23	c.C2992T	p.R998X	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79076844	79076844	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon4	c.A10778G	p.E3593G	.	.	.
EDIL3	10085	broad.mit.edu	36	5	83391937	83391937	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005711	exon9	c.G1075A	p.D359N	.	.	.
PDLIM4	8572	broad.mit.edu	36	5	131634678	131634678	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001131027	exon4	c.499delC	p.P167fs	.	.	.
CD74	972	broad.mit.edu	36	5	149766717	149766717	+	Splice_Site	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
SIM1	6492	broad.mit.edu	36	6	100948433	100948433	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005068	exon10	c.C1221T	p.G407G	.	.	.
AIM1	202	broad.mit.edu	36	6	107113135	107113135	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001624	exon16	c.A4573G	p.N1525D	.	.	.
PDSS2	57107	broad.mit.edu	36	6	107638342	107638342	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020381	exon6	c.C1002T	p.I334I	.	.	.
NEDD9	4739	broad.mit.edu	36	6	11299142	11299142	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006403	exon5	c.G946A	p.A316T	.	.	.
RSPH4A	345895	broad.mit.edu	36	6	117055871	117055871	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161664	exon3	c.A1308G	p.E436E	.	.	.
RFX6	222546	broad.mit.edu	36	6	117351053	117351053	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173560	exon14	c.C1528A	p.L510I	.	.	.
ROS1	6098	broad.mit.edu	36	6	117716648	117716648	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002944	exon43	c.C6744T	p.G2248G	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838327	127838327	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon6	c.A2537G	p.Y846C	.	.	.
LAMA2	3908	broad.mit.edu	36	6	129675867	129675867	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079823	exon23	c.G3343A	p.A1115T	.	.	.
MAP7	9053	broad.mit.edu	36	6	136725459	136725459	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198614	exon12	c.A1414G	p.T472A	.	.	.
PLAGL1	5325	broad.mit.edu	36	6	144305428	144305428	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080955	exon6	c.G62A	p.R21Q	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146282236	146282236	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon22	c.C4105T	p.R1369C	.	.	.
GRM1	2911	broad.mit.edu	36	6	146522300	146522300	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114329	exon3	c.G824A	p.R275H	.	.	.
ESR1	2099	broad.mit.edu	36	6	152374604	152374604	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122740	exon6	c.C1217A	p.P406H	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152514830	152514830	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon49	c.A7841G	p.D2614G	.	.	.
SYNE1	23345	broad.mit.edu	36	6	152625008	152625008	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015293	exon16	c.C2396T	p.P799L	.	.	.
OPRM1	4988	broad.mit.edu	36	6	154402615	154402615	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000914	exon1	c.C243T	p.C81C	.	.	.
DTNBP1	84062	broad.mit.edu	36	6	15641493	15641493	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032122	exon8	c.G624A	p.E208E	.	.	.
WTAP	9589	broad.mit.edu	36	6	160096135	160096135	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004906	exon8	c.G693A	p.E231E	.	.	.
MLLT4	4301	broad.mit.edu	36	6	168094724	168094724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040000	exon29	c.C3820T	p.R1274C	.	.	.
SMOC2	64094	broad.mit.edu	36	6	168653493	168653493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166412	exon2	c.C134T	p.A45V	.	.	.
LRRC16A	55604	broad.mit.edu	36	6	25628533	25628533	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017640	exon23	c.G1957A	p.A653T	.	.	.
PRSS16	10279	broad.mit.edu	36	6	27328700	27328700	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005865	exon9	c.C1143T	p.F381F	.	.	.
HLA-C	3107	broad.mit.edu	36	6	31346133	31346133	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002117	exon4	c.G728T	p.R243L	.	.	.
NFKBIL1	4795	broad.mit.edu	36	6	31634301	31634301	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144963	exon4	c.C966A	p.G322G	.	.	.
TAP1	6890	broad.mit.edu	36	6	32926249	32926249	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000593	exon5	c.A1254G	p.E418E	.	.	.
PPARD	5467	broad.mit.edu	36	6	35501644	35501644	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171818	exon9	c.G1136A	p.R379H	.	.	.
KIAA0240	23506	broad.mit.edu	36	6	42940456	42940456	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015349	exon12	c.A2534G	p.H845R	.	.	.
SRF	6722	broad.mit.edu	36	6	43249704	43249704	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003131	exon2	c.C655A	p.L219I	.	.	.
VEGFA	7422	broad.mit.edu	36	6	43857760	43857760	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025369	exon6	c.G1052A	p.R351H	.	.	.
TMEM63B	55362	broad.mit.edu	36	6	44223101	44223101	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018426	exon12	c.C873A	p.A291A	.	.	.
PKHD1	5314	broad.mit.edu	36	6	51907029	51907029	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170724	exon37	c.G5959A	p.A1987T	.	.	.
LRRC1	55227	broad.mit.edu	36	6	53886675	53886675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018214	exon11	c.C1055T	p.A352V	.	.	.
HMGCLL1	54511	broad.mit.edu	36	6	55551795	55551795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019036	exon1	c.C18T	p.S6S	.	.	.
EXOC2	55770	broad.mit.edu	36	6	582755	582755	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018303	exon2	c.A64G	p.T22A	.	.	.
RIOK1	83732	broad.mit.edu	36	6	7338450	7338450	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031480	exon2	c.A191G	p.D64G	.	.	.
DOPEY1	23033	broad.mit.edu	36	6	83885333	83885333	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015018	exon8	c.G788A	p.R263Q	.	.	.
KIAA1009	22832	broad.mit.edu	36	6	84951764	84951764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014895	exon13	c.C1523T	p.A508V	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88025804	88025804	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.C5738A	p.A1913D	.	.	.
SRSF12	135295	broad.mit.edu	36	6	89873616	89873616	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080743	exon2	c.G146A	p.R49H	.	.	.
ANKRD6	22881	broad.mit.edu	36	6	90369521	90369521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014942	exon4	c.G274A	p.A92T	.	.	.
MDN1	23195	broad.mit.edu	36	6	90485463	90485463	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014611	exon42	c.A6065G	p.Y2022C	.	.	.
C6orf103	79747	broad.mit.edu	36	6	147178020	147178020	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024694	exon36	c.4978delA	p.K1660fs	.	.	.
MUC17	140453	broad.mit.edu	36	7	100463382	100463382	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon3	c.C1965T	p.D655D	.	.	.
SERPINE1	5054	broad.mit.edu	36	7	100560462	100560462	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000602	exon3	c.G312A	p.E104E	.	.	.
FBXL13	222235	broad.mit.edu	36	7	102353970	102353970	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111038	exon10	c.C865T	p.R289X	.	.	.
FBXL13	222235	broad.mit.edu	36	7	102359572	102359572	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111038	exon9	c.A769C	p.T257P	.	.	.
RELN	5649	broad.mit.edu	36	7	103125724	103125724	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005045	exon10	c.G955A	p.A319T	.	.	.
COG5	10466	broad.mit.edu	36	7	106840309	106840309	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001161520	exon7	c.T636C	p.Y212Y	.	.	.
PHF14	9678	broad.mit.edu	36	7	11034891	11034891	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014660	exon7	c.A1376T	p.D459V	.	.	.
LRRN3	54674	broad.mit.edu	36	7	110550754	110550754	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018334	exon2	c.C690T	p.N230N	.	.	.
CFTR	1080	broad.mit.edu	36	7	117019408	117019408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000492	exon14	c.G1951A	p.D651N	.	.	.
C7orf58	79974	broad.mit.edu	36	7	120527370	120527370	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024913	exon7	c.C904T	p.R302C	.	.	.
IQUB	154865	broad.mit.edu	36	7	122888813	122888813	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon11	c.C1841T	p.S614F	.	.	.
WASL	8976	broad.mit.edu	36	7	123119826	123119826	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003941	exon9	c.G1158A	p.P386P	.	.	.
TNPO3	23534	broad.mit.edu	36	7	128402164	128402164	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012470	exon18	c.C2267T	p.A756V	.	.	.
CNOT4	4850	broad.mit.edu	36	7	134729541	134729541	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190850	exon10	c.G1296A	p.S432S	.	.	.
PARP12	64761	broad.mit.edu	36	7	139370982	139370982	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022750	exon12	c.C1953T	p.C651C	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
CNTNAP2	26047	broad.mit.edu	36	7	147737450	147737450	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014141	exon23	c.C3750T	p.G1250G	.	.	.
CUL1	8454	broad.mit.edu	36	7	148128566	148128566	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003592	exon22	c.C2290T	p.R764X	.	.	.
ZNF777	27153	broad.mit.edu	36	7	148759900	148759900	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015694	exon6	c.C2396T	p.A799V	.	.	.
ABP1	26	broad.mit.edu	36	7	150189152	150189152	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001091	exon5	c.C2178T	p.V726V	.	.	.
ABCB8	11194	broad.mit.edu	36	7	150363957	150363957	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007188	exon7	c.G983A	p.R328H	.	.	.
MLL3	58508	broad.mit.edu	36	7	151510361	151510361	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170606	exon36	c.G5517A	p.T1839T	.	.	.
PTPRN2	5799	broad.mit.edu	36	7	157141940	157141940	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130843	exon13	c.G1979A	p.R660H	.	.	.
SNX13	23161	broad.mit.edu	36	7	17881900	17881900	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015132	exon6	c.G479A	p.R160H	.	.	.
MAD1L1	8379	broad.mit.edu	36	7	1904426	1904426	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013836	exon18	c.C1934T	p.T645M	.	.	.
SNX10	29887	broad.mit.edu	36	7	26378049	26378049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199837	exon4	c.C386T	p.A129V	.	.	.
HOXA11	3207	broad.mit.edu	36	7	27189071	27189071	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005523	exon2	c.C811T	p.R271C	.	.	.
SDK1	221935	broad.mit.edu	36	7	3975569	3975569	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon11	c.G1701A	p.T567T	.	.	.
CDK13	8621	broad.mit.edu	36	7	40052066	40052066	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003718	exon6	c.G2460T	p.Q820H	.	.	.
INHBA	3624	broad.mit.edu	36	7	41695924	41695924	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon3	c.G1130A	p.R377H	.	.	.
HECW1	23072	broad.mit.edu	36	7	43450421	43450421	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015052	exon11	c.C1125T	p.S375S	.	.	.
DBNL	28988	broad.mit.edu	36	7	44062954	44062954	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014063	exon5	c.A401T	p.K134M	.	.	.
NPC1L1	29881	broad.mit.edu	36	7	44540613	44540613	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013389	exon6	c.C2124T	p.S708S	.	.	.
HUS1	3364	broad.mit.edu	36	7	47982855	47982855	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004507	exon4	c.T462C	p.P154P	.	.	.
C7orf57	136288	broad.mit.edu	36	7	48052681	48052681	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100159	exon5	c.C450T	p.F150F	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48413930	48413930	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon37	c.T11815C	p.C3939R	.	.	.
POM121L12	285877	broad.mit.edu	36	7	53071153	53071153	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182595	exon1	c.C295T	p.R99C	.	.	.
BAZ1B	9031	broad.mit.edu	36	7	72529680	72529680	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032408	exon7	c.T2047C	p.L683L	.	.	.
ICA1	3382	broad.mit.edu	36	7	8145163	8145163	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004968	exon11	c.G995A	p.G332D	.	.	.
PCLO	27445	broad.mit.edu	36	7	82225836	82225836	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon25	c.A15420G	p.Q5140Q	.	.	.
PCLO	27445	broad.mit.edu	36	7	82383669	82383669	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033026	exon7	c.A11569G	p.R3857G	.	.	.
PEX1	5189	broad.mit.edu	36	7	91984577	91984577	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000466	exon5	c.T1188C	p.N396N	.	.	.
TAC1	6863	broad.mit.edu	36	7	97201013	97201013	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013997	exon3	c.G166A	p.A56T	.	.	.
SMURF1	57154	broad.mit.edu	36	7	98487816	98487816	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020429	exon7	c.G669A	p.T223T	.	.	.
RINT1	60561	broad.mit.edu	36	7	104970138	104970138	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021930	exon4	c.321delA	p.L107fs	.	.	.
RP1L1	94137	broad.mit.edu	36	8	10506154	10506154	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178857	exon4	c.C2864A	p.A955D	.	.	.
RIMS2	9699	broad.mit.edu	36	8	105070710	105070710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100117	exon17	c.C2929T	p.R977W	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110510817	110510817	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon26	c.A3073G	p.R1025G	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113911132	113911132	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon12	c.C1818T	p.G606G	.	.	.
BLK	640	broad.mit.edu	36	8	11450323	11450323	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001715	exon8	c.G693T	p.Q231H	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118252510	118252510	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173851	exon7	c.G886A	p.G296R	.	.	.
HAS2	3037	broad.mit.edu	36	8	122710246	122710246	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005328	exon2	c.G516A	p.T172T	.	.	.
FAM83A	84985	broad.mit.edu	36	8	124273296	124273296	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032899	exon2	c.C553T	p.R185C	.	.	.
DLC1	10395	broad.mit.edu	36	8	12987743	12987743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon18	c.G4535A	p.R1512Q	.	.	.
DLC1	10395	broad.mit.edu	36	8	13002224	13002224	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon9	c.C1993T	p.R665C	.	.	.
ADCY8	114	broad.mit.edu	36	8	131881975	131881975	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001115	exon15	c.C2939A	p.A980D	.	.	.
DLC1	10395	broad.mit.edu	36	8	13303474	13303474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182643	exon3	c.C1049T	p.A350V	.	.	.
PHF20L1	51105	broad.mit.edu	36	8	133906767	133906767	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016018	exon14	c.G1713A	p.K571K	.	.	.
TG	7038	broad.mit.edu	36	8	133968067	133968067	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003235	exon9	c.G1268A	p.R423H	.	.	.
SLA	6503	broad.mit.edu	36	8	134126497	134126497	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001045556	exon7	c.G398A	p.R133H	.	.	.
KCNK9	51305	broad.mit.edu	36	8	140784352	140784352	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016601	exon1	c.C66T	p.G22G	 KCNK9,lung,NS,Substitution - coding silent,0 	.	.
DENND3	22898	broad.mit.edu	36	8	142273411	142273411	+	Missense_Mutation	SNP	C	A	A	rs61743929	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014957	exon23	c.C3494A	p.A1165E	.	.	.
GML	2765	broad.mit.edu	36	8	143925044	143925044	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002066	exon4	c.G413A	p.R138K	.	.	.
TNFRSF10B	8795	broad.mit.edu	36	8	22944237	22944237	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003842	exon3	c.G344A	p.R115H	.	.	.
ENTPD4	9583	broad.mit.edu	36	8	23353225	23353225	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004901	exon9	c.A1031T	p.N344I	.	.	.
EXTL3	2137	broad.mit.edu	36	8	28651007	28651007	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001440	exon5	c.G2329A	p.A777T	.	.	.
MYST3	7994	broad.mit.edu	36	8	41955372	41955372	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099413	exon7	c.C988T	p.R330C	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52421026	52421026	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144651	exon20	c.G3936A	p.T1312T	.	.	.
NPBWR1	2831	broad.mit.edu	36	8	54015720	54015720	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005285	exon1	c.C700T	p.R234W	.	.	.
TCEA1	6917	broad.mit.edu	36	8	55054221	55054221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201437	exon7	c.C679T	p.H227Y	.	.	.
CHD7	55636	broad.mit.edu	36	8	61817660	61817660	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017780	exon2	c.C1115A	p.S372X	.	.	.
CHD7	55636	broad.mit.edu	36	8	61913333	61913333	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017780	exon19	c.A4498G	p.I1500V	.	.	.
MYBL1	4603	broad.mit.edu	36	8	67650842	67650842	+	Missense_Mutation	SNP	G	A	A	rs61753806	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080416	exon10	c.C1424T	p.A475V	.	.	.
PRDM14	63978	broad.mit.edu	36	8	71127068	71127068	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024504	exon8	c.G1514A	p.R505H	.	.	.
KCNB2	9312	broad.mit.edu	36	8	74011038	74011038	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004770	exon3	c.C894T	p.R298R	.	.	.
STAU2	27067	broad.mit.edu	36	8	74763573	74763573	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164384	exon3	c.G48A	p.E16E	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77925726	77925726	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.G4014T	p.K1338N	.	.	.
FABP5	2171	broad.mit.edu	36	8	82355389	82355389	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001444	exon1	c.G4A	p.A2T	.	.	.
NBN	4683	broad.mit.edu	36	8	91029231	91029231	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002485	exon12	c.A1911G	p.I637M	.	.	.
TMEM67	91147	broad.mit.edu	36	8	94890279	94890279	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153704	exon24	c.C2475G	p.N825K	.	.	.
ESRP1	54845	broad.mit.edu	36	8	95774135	95774135	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017697	exon14	c.C1875T	p.S625S	.	.	.
PTDSS1	9791	broad.mit.edu	36	8	97391014	97391014	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014754	exon9	c.G1061A	p.C354Y	.	.	.
BAT2L1	84726	broad.mit.edu	36	9	133340607	133340608	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_013318	exon15	c.3270_3271insG	p.G1090fs	.	.	.
ALDOB	229	broad.mit.edu	36	9	103227029	103227029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000035	exon8	c.C916A	p.L306M	.	.	.
FOXD4	2298	broad.mit.edu	36	9	108098	108098	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207305	exon1	c.C22T	p.R8C	.	.	.
OR1L4	254973	broad.mit.edu	36	9	124526859	124526859	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005235	exon1	c.T770A	p.I257N	.	.	.
OLFML2A	169611	broad.mit.edu	36	9	126612268	126612268	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182487	exon8	c.G1715A	p.R572Q	.	.	.
TYRP1	7306	broad.mit.edu	36	9	12684121	12684121	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000550	exon2	c.G125A	p.C42Y	.	.	.
STXBP1	6812	broad.mit.edu	36	9	129463268	129463268	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003165	exon6	c.C392T	p.T131M	.	.	.
ST6GALNAC6	30815	broad.mit.edu	36	9	129692978	129692978	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013443	exon5	c.G463A	p.V155I	.	.	.
DNM1	1759	broad.mit.edu	36	9	130036192	130036192	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005336	exon11	c.C1407T	p.G469G	.	.	.
BRD3	8019	broad.mit.edu	36	9	135900334	135900334	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007371	exon7	c.G1117A	p.A373T	.	.	.
UBAC1	10422	broad.mit.edu	36	9	137979521	137979521	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016172	exon4	c.G385A	p.A129T	.	.	.
MAN1B1	11253	broad.mit.edu	36	9	139114131	139114131	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016219	exon6	c.T893C	p.M298T	.	.	.
IFNA16	3449	broad.mit.edu	36	9	21206889	21206889	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002173	exon1	c.C416T	p.S139F	.	.	.
RFX3	5991	broad.mit.edu	36	9	3252957	3252957	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134428	exon14	c.G1583A	p.R528H	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32620111	32620111	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.G5467A	p.G1823R	.	.	.
KIF24	347240	broad.mit.edu	36	9	34246069	34246069	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194313	exon11	c.C3536T	p.T1179M	.	.	.
SIGMAR1	10280	broad.mit.edu	36	9	34625739	34625739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147157	exon3	c.G469A	p.D157N	.	.	.
UNC13B	10497	broad.mit.edu	36	9	35389698	35389698	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006377	exon35	c.T4061C	p.V1354A	.	.	.
FBXO10	26267	broad.mit.edu	36	9	37527509	37527509	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012166	exon3	c.G1017T	p.E339D	.	.	.
INSL6	11172	broad.mit.edu	36	9	5153996	5153996	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007179	exon2	c.G559T	p.E187X	.	.	.
KIAA2026	158358	broad.mit.edu	36	9	5909744	5909744	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017969	exon8	c.G6252A	p.A2084A	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72340910	72340910	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon25	c.G4903A	p.A1635T	.	.	.
TLE4	7091	broad.mit.edu	36	9	81432124	81432124	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007005	exon6	c.G331A	p.V111M	.	.	.
NTRK2	4915	broad.mit.edu	36	9	86760228	86760228	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006180	exon19	c.C2148T	p.D716D	.	.	.
DAPK1	1612	broad.mit.edu	36	9	89511653	89511653	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004938	exon26	c.A3847G	p.M1283V	.	.	.
C9orf79	286234	broad.mit.edu	36	9	89690163	89690163	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178828	exon4	c.C941T	p.T314I	.	.	.
SEMA4D	10507	broad.mit.edu	36	9	91196127	91196127	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142287	exon11	c.G646A	p.V216M	.	.	.
PTCH1	5727	broad.mit.edu	36	9	97271088	97271088	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001083605	exon14	c.G1563A	p.T521T	.	.	.
C9orf156	51531	broad.mit.edu	36	9	99712631	99712631	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016481	exon4	c.G498A	p.P166P	.	.	.
RAB9B	51209	broad.mit.edu	36	X	102966991	102966991	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016370	exon3	c.A380G	p.D127G	.	.	.
PSMD10	5716	broad.mit.edu	36	X	107217847	107217847	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002814	exon3	c.A352G	p.R118G	.	.	.
TRPC5	7224	broad.mit.edu	36	X	111042387	111042387	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012471	exon3	c.C688T	p.L230F	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117584010	117584010	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon8	c.C708T	p.R236R	.	.	.
ACTRT1	139741	broad.mit.edu	36	X	127012804	127012804	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138289	exon1	c.C1063T	p.Q355X	.	.	.
ACTRT1	139741	broad.mit.edu	36	X	127013030	127013030	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138289	exon1	c.C837A	p.V279V	.	.	.
AIFM1	9131	broad.mit.edu	36	X	129111135	129111135	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145812	exon3	c.C327T	p.A109A	.	.	.
SLC25A14	9016	broad.mit.edu	36	X	129326384	129326384	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003951	exon7	c.C696T	p.G232G	.	.	.
IGSF1	3547	broad.mit.edu	36	X	130244686	130244686	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170962	exon5	c.G874A	p.A292T	.	.	.
FAM127B	26071	broad.mit.edu	36	X	134013749	134013749	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134321	exon1	c.C56T	p.A19V	.	.	.
AFF2	2334	broad.mit.edu	36	X	147551410	147551410	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002025	exon3	c.C470A	p.P157H	.	.	.
HMGB3	3149	broad.mit.edu	36	X	149907018	149907018	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005342	exon5	c.G576A	p.E192E	.	.	.
AVPR2	554	broad.mit.edu	36	X	152824909	152824909	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000054	exon2	c.G755A	p.R252Q	.	.	.
AVPR2	554	broad.mit.edu	36	X	152825273	152825273	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000054	exon3	c.G1013A	p.S338N	.	.	.
ZRSR2	8233	broad.mit.edu	36	X	15718544	15718544	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005089	exon1	c.C5A	p.A2D	.	.	.
TXLNG	55787	broad.mit.edu	36	X	16760733	16760733	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018360	exon6	c.A931G	p.T311A	.	.	.
PHKA2	5256	broad.mit.edu	36	X	18876855	18876855	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000292	exon5	c.C465G	p.I155M	.	.	.
ZFX	7543	broad.mit.edu	36	X	24135831	24135831	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178095	exon5	c.T878C	p.V293A	.	.	.
ARX	170302	broad.mit.edu	36	X	24943684	24943684	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139058	exon1	c.G92A	p.S31N	.	.	.
DCAF8L1	139425	broad.mit.edu	36	X	27908495	27908495	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017930	exon1	c.C878T	p.A293V	.	.	.
MAGEB1	4112	broad.mit.edu	36	X	30179313	30179313	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002363	exon4	c.C782A	p.P261H	.	.	.
TAB3	257397	broad.mit.edu	36	X	30787549	30787549	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152787	exon5	c.C78T	p.G26G	.	.	.
DMD	1756	broad.mit.edu	36	X	31054704	31054704	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004015	exon17	c.T1818A	p.N606K	.	.	.
DMD	1756	broad.mit.edu	36	X	31702045	31702045	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004021	exon8	c.A115T	p.M39L	.	.	.
DMD	1756	broad.mit.edu	36	X	32376519	32376519	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004006	exon27	c.T3761C	p.L1254P	.	.	.
CASK	8573	broad.mit.edu	36	X	41415713	41415713	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126054	exon6	c.C444T	p.L148L	.	.	.
UBA1	7317	broad.mit.edu	36	X	46945874	46945874	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153280	exon8	c.C732T	p.S244S	.	.	.
PORCN	64840	broad.mit.edu	36	X	48254654	48254654	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203474	exon2	c.G164A	p.S55N	.	.	.
WDR13	64743	broad.mit.edu	36	X	48343662	48343662	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001166426	exon4	c.C259T	p.R87C	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48740815	48740815	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020137	exon2	c.G88A	p.E30K	.	.	.
PPP1R3F	89801	broad.mit.edu	36	X	49013664	49013664	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033215	exon1	c.C388T	p.R130C	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53632171	53632171	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon37	c.A4510C	p.T1504P	.	.	.
USP51	158880	broad.mit.edu	36	X	55531979	55531979	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_201286	exon2	c.C119A	p.A40E	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57952515	57952515	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007156	exon1	c.G1065A	p.E355E	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831415	5831415	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon5	c.C1304T	p.T435M	.	.	.
NLGN4X	57502	broad.mit.edu	36	X	5831624	5831624	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020742	exon5	c.C1095T	p.Y365Y	.	.	.
OPHN1	4983	broad.mit.edu	36	X	67209831	67209831	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002547	exon20	c.G1722A	p.P574P	.	.	.
STARD8	9754	broad.mit.edu	36	X	67860310	67860310	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014725	exon12	c.C2677T	p.R893W	.	.	.
AWAT1	158833	broad.mit.edu	36	X	69376410	69376410	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013579	exon6	c.C733T	p.R245C	.	.	.
KIF4A	24137	broad.mit.edu	36	X	69556654	69556654	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012310	exon31	c.C3513T	p.C1171C	.	.	.
TEX11	56159	broad.mit.edu	36	X	69747082	69747082	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003811	exon22	c.T1833C	p.N611N	.	.	.
SLC7A3	84889	broad.mit.edu	36	X	70065154	70065154	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032803	exon4	c.G584A	p.G195D	.	.	.
MED12	9968	broad.mit.edu	36	X	70257711	70257711	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005120	exon5	c.C719T	p.A240V	.	.	.
GJB1	2705	broad.mit.edu	36	X	70360830	70360830	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000166	exon2	c.G548A	p.R183H	.	.	.
NAP1L2	4674	broad.mit.edu	36	X	72349828	72349828	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021963	exon1	c.C1226A	p.S409X	.	.	.
PNPLA4	8228	broad.mit.edu	36	X	7854159	7854159	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004650	exon2	c.T2C	p.M1T	.	.	.
TBX22	50945	broad.mit.edu	36	X	79169004	79169004	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109878	exon6	c.C779T	p.T260M	.	.	.
HDX	139324	broad.mit.edu	36	X	83485999	83485999	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177479	exon7	c.A1575G	p.P525P	.	.	.
SAT1	6303	broad.mit.edu	36	X	23712068	23712068	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3949-01A-01W-0995-10	TCGA-AA-3949-10A-01W-0995-10	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
