Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ABLIM1	3983	broad.mit.edu	36	10	116325258	116325258	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002313	exon3	c.G470A	p.R157H	.	.	.
SEC23IP	11196	broad.mit.edu	36	10	121667356	121667356	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007190	exon9	c.T1563G	p.T521T	.	.	.
MKI67	4288	broad.mit.edu	36	10	129803485	129803485	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002417	exon7	c.A1177G	p.R393G	.	.	.
UCMA	221044	broad.mit.edu	36	10	13304123	13304123	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145314	exon5	c.C403T	p.R135C	.	.	.
PPP2R2D	55844	broad.mit.edu	36	10	133611113	133611113	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018461	exon6	c.C812A	p.A271E	.	.	.
FAM171A1	221061	broad.mit.edu	36	10	15296381	15296381	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010924	exon8	c.G1212A	p.P404P	.	.	.
PTER	9317	broad.mit.edu	36	10	16566742	16566742	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001484	exon3	c.G353A	p.G118D	.	.	.
ARHGAP21	57584	broad.mit.edu	36	10	24920216	24920216	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020824	exon24	c.T4094C	p.I1365T	.	.	.
THNSL1	79896	broad.mit.edu	36	10	25353810	25353810	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024838	exon3	c.T1652C	p.L551P	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26483702	26483702	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon25	c.C2737T	p.R913C	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26531975	26531975	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon34	c.A4663G	p.S1555G	.	.	.
GAD2	2572	broad.mit.edu	36	10	26615380	26615380	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134366	exon13	c.G1337A	p.C446Y	.	.	.
PDSS1	23590	broad.mit.edu	36	10	27038669	27038669	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014317	exon5	c.G433A	p.A145T	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28141555	28141555	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon20	c.A3027G	p.L1009L	.	.	.
ARMC4	55130	broad.mit.edu	36	10	28290548	28290548	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018076	exon10	c.G1341A	p.L447L	.	.	.
KIAA1462	57608	broad.mit.edu	36	10	30355488	30355488	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020848	exon3	c.A3595T	p.K1199X	.	.	.
CUL2	8453	broad.mit.edu	36	10	35360553	35360553	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198777	exon13	c.C1171T	p.L391F	.	.	.
OR13A1	79290	broad.mit.edu	36	10	45119428	45119428	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004297	exon4	c.A449G	p.Y150C	.	.	.
FAM21C	253725	broad.mit.edu	36	10	45600024	45600024	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169106	exon24	c.C2484T	p.C828C	.	.	.
SYT15	83849	broad.mit.edu	36	10	46382000	46382000	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031912	exon8	c.G1242A	p.A414A	.	.	.
FRMPD2	143162	broad.mit.edu	36	10	49041508	49041508	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018071	exon28	c.A3750T	p.T1250T	.	.	.
PGBD3	267004	broad.mit.edu	36	10	50394508	50394508	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170753	exon2	c.A659T	p.D220V	.	.	.
CSTF2T	23283	broad.mit.edu	36	10	53128420	53128420	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015235	exon1	c.C896A	p.P299H	.	.	.
UCN3	114131	broad.mit.edu	36	10	5405789	5405789	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053049	exon2	c.C106T	p.L36F	.	.	.
PCDH15	65217	broad.mit.edu	36	10	55252235	55252235	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142767	exon31	c.A5137G	p.I1713V	.	.	.
REEP3	221035	broad.mit.edu	36	10	65027804	65027804	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001330	exon4	c.A197G	p.Y66C	.	.	.
CTNNA3	29119	broad.mit.edu	36	10	68610128	68610128	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013266	exon7	c.G1000A	p.A334T	.	.	.
TET1	80312	broad.mit.edu	36	10	70076616	70076616	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030625	exon4	c.T4124C	p.V1375A	.	.	.
CCAR1	55749	broad.mit.edu	36	10	70183626	70183626	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018237	exon11	c.A1130G	p.D377G	.	.	.
UNC5B	219699	broad.mit.edu	36	10	72721473	72721473	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_170744	exon10	c.C1573T	p.R525C	.	.	.
SFMBT2	57713	broad.mit.edu	36	10	7449789	7449789	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029880	exon4	c.G264A	p.P88P	.	.	.
MYST4	23522	broad.mit.edu	36	10	76460377	76460377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012330	exon18	c.C5789T	p.A1930V	.	.	.
ITIH5	80760	broad.mit.edu	36	10	7658940	7658940	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030569	exon10	c.G1460A	p.R487H	.	.	.
RGR	5995	broad.mit.edu	36	10	86002619	86002619	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012720	exon4	c.G385A	p.V129I	.	.	.
BMPR1A	657	broad.mit.edu	36	10	88673149	88673149	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004329	exon12	c.T1379C	p.M460T	.	.	.
KIF20B	9585	broad.mit.edu	36	10	91469344	91469344	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016195	exon13	c.C1623T	p.N541N	.	.	.
TLL2	7093	broad.mit.edu	36	10	98145086	98145086	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012465	exon13	c.G1574A	p.R525Q	.	.	.
PGAM1	5223	broad.mit.edu	36	10	99182225	99182225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002629	exon4	c.G719A	p.R240H	.	.	.
GBF1	8729	broad.mit.edu	36	10	104116871	104116871	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199378	exon20	c.2473delT	p.F825fs	.	.	.
CPXM2	119587	broad.mit.edu	36	10	125496410	125496410	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198148	exon14	c.2131delG	p.A711fs	.	.	.
MYO3A	53904	broad.mit.edu	36	10	26502766	26502766	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017433	exon30	c.3567delA	p.P1189fs	.	.	.
BTAF1	9044	broad.mit.edu	36	10	93731821	93731821	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003972	exon17	c.1907delA	p.E636fs	.	.	.
TM9SF3	56889	broad.mit.edu	36	10	98315095	98315095	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020123	exon3	c.377delA	p.N126fs	.	.	.
CCDC15	80071	broad.mit.edu	36	11	124350258	124350259	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025004	exon5	c.573_574insA	p.I191fs	.	.	.
SNX19	399979	broad.mit.edu	36	11	130283122	130283123	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014758	exon5	c.2101_2102insC	p.T701fs	.	.	.
CTR9	9646	broad.mit.edu	36	11	10742737	10742737	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014633	exon12	c.G1480A	p.A494T	.	.	.
ATM	472	broad.mit.edu	36	11	107692031	107692031	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000051	exon42	c.G6179A	p.R2060H	.	.	.
ZC3H12C	85463	broad.mit.edu	36	11	109541634	109541634	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033390	exon6	c.G2614A	p.A872T	.	.	.
ZBTB16	7704	broad.mit.edu	36	11	113440080	113440080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006006	exon2	c.C848T	p.P283L	.	.	.
CADM1	23705	broad.mit.edu	36	11	114590682	114590682	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014333	exon7	c.G850A	p.D284N	.	.	.
APOA5	116519	broad.mit.edu	36	11	116166157	116166157	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052968	exon4	c.G998A	p.S333N	.	.	.
CEP164	22897	broad.mit.edu	36	11	116714550	116714550	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014956	exon3	c.T38G	p.V13G	.	.	.
CXCR5	643	broad.mit.edu	36	11	118269745	118269745	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032966	exon1	c.C147T	p.A49A	.	.	.
HYOU1	10525	broad.mit.edu	36	11	118428648	118428648	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006389	exon9	c.C898T	p.R300W	.	.	.
GRIK4	2900	broad.mit.edu	36	11	120036241	120036241	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014619	exon1	c.C4T	p.P2S	.	.	.
TECTA	7007	broad.mit.edu	36	11	120485240	120485240	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005422	exon3	c.G309A	p.V103V	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1220924	1220924	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002458	exon31	c.A6238G	p.T2080A	.	.	.
MICAL2	9645	broad.mit.edu	36	11	12220892	12220892	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014632	exon20	c.G2655A	p.P885P	.	.	.
OR10G4	390264	broad.mit.edu	36	11	123392328	123392328	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004462	exon1	c.G837A	p.T279T	.	.	.
VWA5A	4013	broad.mit.edu	36	11	123518487	123518487	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014622	exon16	c.G2152T	p.E718X	.	.	.
OR8B2	26595	broad.mit.edu	36	11	123757857	123757857	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005468	exon1	c.T593C	p.V198A	.	.	.
RPUSD4	84881	broad.mit.edu	36	11	125586640	125586640	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032795	exon1	c.C104T	p.A35V	.	.	.
GLB1L3	112937	broad.mit.edu	36	11	133686254	133686254	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080407	exon13	c.G1267A	p.A423T	.	.	.
GLB1L2	89944	broad.mit.edu	36	11	133717893	133717893	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138342	exon2	c.G122A	p.R41H	.	.	.
BRSK2	9024	broad.mit.edu	36	11	1429177	1429177	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003957	exon15	c.T1496C	p.V499A	.	.	.
ABCC8	6833	broad.mit.edu	36	11	17409047	17409047	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000352	exon12	c.C1707T	p.A569A	.	.	.
MRGPRX3	117195	broad.mit.edu	36	11	18116164	18116164	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_054031	exon3	c.A839G	p.Q280R	.	.	.
E2F8	79733	broad.mit.edu	36	11	19208090	19208090	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024680	exon10	c.A1380C	p.K460N	.	.	.
FANCF	2188	broad.mit.edu	36	11	22603074	22603074	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022725	exon1	c.T859C	p.Y287H	.	.	.
CCDC34	91057	broad.mit.edu	36	11	27318863	27318863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030771	exon5	c.G863A	p.R288H	.	.	.
BDNF	627	broad.mit.edu	36	11	27636287	27636287	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143805	exon2	c.G401A	p.R134H	.	.	.
METT5D1	196074	broad.mit.edu	36	11	28274878	28274878	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152636	exon6	c.A602G	p.Y201C	.	.	.
KCNA4	3739	broad.mit.edu	36	11	29989495	29989495	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002233	exon2	c.A1307G	p.Q436R	.	.	.
HIPK3	10114	broad.mit.edu	36	11	33315253	33315253	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001048200	exon4	c.T1278C	p.G426G	.	.	.
PAMR1	25891	broad.mit.edu	36	11	35410851	35410851	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001991	exon11	c.G1792T	p.V598L	.	.	.
NUP98	4928	broad.mit.edu	36	11	3701029	3701029	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005387	exon16	c.C2131A	p.H711N	.	.	.
OR52B4	143496	broad.mit.edu	36	11	4345281	4345281	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005161	exon1	c.T821C	p.I274T	.	.	.
LRP4	4038	broad.mit.edu	36	11	46868419	46868419	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002334	exon14	c.G1900A	p.A634T	.	.	.
ARFGAP2	84364	broad.mit.edu	36	11	47146363	47146363	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032389	exon11	c.C957T	p.S319S	.	.	.
MYBPC3	4607	broad.mit.edu	36	11	47327998	47327998	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000256	exon5	c.C557T	p.P186L	.	.	.
OR51F1	256892	broad.mit.edu	36	11	4746883	4746883	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004752	exon1	c.G841A	p.V281I	.	.	.
FNBP4	23360	broad.mit.edu	36	11	47724345	47724345	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015308	exon7	c.G1084A	p.V362I	.	.	.
OR4B1	119765	broad.mit.edu	36	11	48195668	48195668	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005470	exon1	c.T731C	p.V244A	.	.	.
OR51A7	119687	broad.mit.edu	36	11	4885876	4885876	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004749	exon1	c.T701C	p.L234P	.	.	.
MMP26	56547	broad.mit.edu	36	11	4967669	4967669	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_021801	exon2	c.T315G	p.T105T	.	.	.
OR51B5	282763	broad.mit.edu	36	11	5321111	5321111	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005567	exon1	c.A220G	p.T74A	.	.	.
OR10AG1	282770	broad.mit.edu	36	11	55491805	55491805	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005491	exon1	c.A711T	p.I237I	.	.	.
OR5T2	219464	broad.mit.edu	36	11	55757180	55757180	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004746	exon1	c.C58A	p.H20N	.	.	.
OR5M3	219482	broad.mit.edu	36	11	55994277	55994277	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004742	exon1	c.T273G	p.T91T	.	.	.
SSRP1	6749	broad.mit.edu	36	11	56851820	56851820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003146	exon14	c.C1724T	p.T575M	.	.	.
P2RX3	5024	broad.mit.edu	36	11	56892146	56892146	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002559	exon9	c.C930T	p.Y310Y	.	.	.
OR52N1	79473	broad.mit.edu	36	11	5766583	5766583	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001001913	exon1	c.T40G	p.F14V	.	.	.
FAM111A	63901	broad.mit.edu	36	11	58676772	58676772	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142521	exon5	c.G1055A	p.R352H	.	.	.
OR10V1	390201	broad.mit.edu	36	11	59237193	59237193	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005324	exon1	c.G702A	p.G234G	.	.	.
FADS3	3995	broad.mit.edu	36	11	61402605	61402605	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021727	exon5	c.C702T	p.D234D	.	.	.
AHNAK	79026	broad.mit.edu	36	11	62052586	62052586	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001620	exon5	c.T5879C	p.V1960A	.	.	.
B3GAT3	26229	broad.mit.edu	36	11	62140629	62140629	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012200	exon4	c.C834A	p.G278G	.	.	.
BSCL2	26580	broad.mit.edu	36	11	62216441	62216441	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130702	exon7	c.G846A	p.A282A	.	.	.
SLC22A11	55867	broad.mit.edu	36	11	64093811	64093811	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018484	exon9	c.C1494T	p.G498G	.	.	.
ARFIP2	23647	broad.mit.edu	36	11	6456722	6456722	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012402	exon5	c.G359T	p.R120L	.	.	.
DNHD1	144132	broad.mit.edu	36	11	6476389	6476389	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144666	exon3	c.A368G	p.H123R	.	.	.
SLC25A45	283130	broad.mit.edu	36	11	64900514	64900514	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001077241	exon6	c.C681A	p.A227A	.	.	.
MAP3K11	4296	broad.mit.edu	36	11	65137365	65137365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002419	exon1	c.C439T	p.R147C	.	.	.
PC	5091	broad.mit.edu	36	11	66375301	66375301	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001040716	exon17	c.G2009A	p.G670D	.	.	.
INPPL1	3636	broad.mit.edu	36	11	71625886	71625886	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001567	exon26	c.C2950A	p.P984T	.	.	.
CLPB	81570	broad.mit.edu	36	11	71823072	71823072	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030813	exon1	c.C95A	p.A32D	.	.	.
FCHSD2	9873	broad.mit.edu	36	11	72278552	72278552	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014824	exon11	c.T1011G	p.R337R	.	.	.
P2RY2	5029	broad.mit.edu	36	11	72623526	72623526	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176072	exon3	c.T674C	p.L225P	.	.	.
OLFML1	283298	broad.mit.edu	36	11	7487984	7487984	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_198474	exon3	c.C1198A	p.P400T	.	.	.
NLRP10	338322	broad.mit.edu	36	11	7938049	7938049	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176821	exon2	c.T1686G	p.D562E	.	.	.
GRM5	2915	broad.mit.edu	36	11	87977704	87977704	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000842	exon5	c.C1224A	p.A408A	.	.	.
FOLH1B	219595	broad.mit.edu	36	11	89044781	89044781	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153696	exon5	c.T260C	p.V87A	.	.	.
SCUBE2	57758	broad.mit.edu	36	11	9052710	9052710	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020974	exon4	c.C411T	p.G137G	.	.	.
FAT3	120114	broad.mit.edu	36	11	91726982	91726982	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.A2056G	p.T686A	.	.	.
FAT3	120114	broad.mit.edu	36	11	91727069	91727069	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008781	exon1	c.T2143G	p.F715V	.	.	.
AMOTL1	154810	broad.mit.edu	36	11	94232373	94232373	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130847	exon9	c.A1980C	p.E660D	.	.	.
MUC5B	727897	broad.mit.edu	36	11	1222024	1222025	+	Frame_Shift_Del	DEL	TG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TG	TG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_002458	exon31	c.7338_7339del	p.2446_2447del	.	.	.
CDON	50937	broad.mit.edu	36	11	125369414	125369414	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016952	exon14	c.2625delT	p.S875fs	.	.	.
KRTAP5-3	387266	broad.mit.edu	36	11	1586103	1586103	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012708	exon1	c.89delG	p.G30fs	.	.	.
MADD	8567	broad.mit.edu	36	11	47263245	47263245	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003682	exon13	c.2335delT	p.F779fs	.	.	.
VEGFB	7423	broad.mit.edu	36	11	63761239	63761239	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003377	exon5	c.379delA	p.K127fs	.	.	.
LOC643923	643923	broad.mit.edu	36	11	106968392	106968392	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
UTP20	27340	broad.mit.edu	36	12	100290863	100290863	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014503	exon52	c.C6869T	p.A2290V	.	.	.
C12orf42	374470	broad.mit.edu	36	12	102224130	102224130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099336	exon5	c.G383A	p.R128H	.	.	.
KLRK1	22914	broad.mit.edu	36	12	10422513	10422513	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199805	exon11	c.A336T	p.Q112H	.	.	.
PWP1	11137	broad.mit.edu	36	12	106622586	106622586	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007062	exon11	c.C1009T	p.R337X	.	.	.
ANAPC7	51434	broad.mit.edu	36	12	109299743	109299743	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137664	exon9	c.G1297A	p.V433I	.	.	.
CUX2	23316	broad.mit.edu	36	12	110270280	110270280	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015267	exon22	c.T4229A	p.V1410E	.	.	.
ATXN2	6311	broad.mit.edu	36	12	110375008	110375008	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002973	exon25	c.G3933T	p.Q1311H	.	.	.
ACAD10	80724	broad.mit.edu	36	12	110671419	110671419	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025247	exon18	c.G2704T	p.G902C	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111084609	111084609	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon75	c.G12706A	p.A4236T	.	.	.
C12orf51	283450	broad.mit.edu	36	12	111139078	111139078	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109662	exon46	c.G6751A	p.V2251I	.	.	.
MAP1LC3B2	643246	broad.mit.edu	36	12	115498184	115498184	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085481	exon2	c.A54C	p.E18D	.	.	.
CIT	11113	broad.mit.edu	36	12	118657394	118657394	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon24	c.G2984A	p.R995H	.	.	.
CIT	11113	broad.mit.edu	36	12	118674321	118674321	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007174	exon22	c.G2695A	p.A899T	.	.	.
GCN1L1	10985	broad.mit.edu	36	12	119058838	119058838	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006836	exon51	c.T6859C	p.L2287L	.	.	.
ETV6	2120	broad.mit.edu	36	12	11913951	11913951	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001987	exon5	c.C790T	p.R264C	.	.	.
SRSF9	8683	broad.mit.edu	36	12	119386252	119386252	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003769	exon3	c.G406A	p.D136N	.	.	.
MLEC	9761	broad.mit.edu	36	12	119618551	119618551	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014730	exon5	c.A699G	p.E233E	.	.	.
P2RX7	5027	broad.mit.edu	36	12	120088281	120088281	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002562	exon7	c.T652G	p.F218V	.	.	.
CLIP1	6249	broad.mit.edu	36	12	121428102	121428102	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198240	exon3	c.G444A	p.P148P	.	.	.
RSRC2	65117	broad.mit.edu	36	12	121567754	121567754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023012	exon5	c.G575A	p.S192N	.	.	.
DNAH10	196385	broad.mit.edu	36	12	122943745	122943745	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207437	exon52	c.C8654T	p.A2885V	.	.	.
SFSWAP	6433	broad.mit.edu	36	12	130807032	130807032	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004592	exon11	c.G1610C	p.G537A	.	.	.
PUS1	80324	broad.mit.edu	36	12	130982770	130982770	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025215	exon3	c.T401C	p.M134T	.	.	.
ATF7IP	55729	broad.mit.edu	36	12	14504784	14504784	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018179	exon9	c.A2247G	p.A749A	.	.	.
SLCO1C1	53919	broad.mit.edu	36	12	20750174	20750174	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017435	exon4	c.T296G	p.V99G	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	20923700	20923700	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019844	exon10	c.T1199A	p.F400Y	.	.	.
SLCO1B3	28234	broad.mit.edu	36	12	21120684	21120684	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009562	exon12	c.T1638C	p.A546A	.	.	.
CASC1	55259	broad.mit.edu	36	12	25163501	25163501	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001082972	exon12	c.T1415C	p.I472T	.	.	.
KDM5A	5927	broad.mit.edu	36	12	265010	265010	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042603	exon28	c.A4946T	p.E1649V	.	.	.
CACNA1C	775	broad.mit.edu	36	12	2670438	2670438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001129842	exon47	c.G6229A	p.A2077T	.	.	.
C12orf11	55726	broad.mit.edu	36	12	26957868	26957868	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018164	exon14	c.A1594G	p.M532V	.	.	.
TMTC1	83857	broad.mit.edu	36	12	29551080	29551080	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193451	exon18	c.G2615A	p.R872Q	.	.	.
CAPRIN2	65981	broad.mit.edu	36	12	30754280	30754280	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002259	exon18	c.G3207T	p.E1069D	.	.	.
TSPAN11	441631	broad.mit.edu	36	12	31008124	31008124	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080509	exon3	c.G181A	p.A61T	.	.	.
DENND5B	160518	broad.mit.edu	36	12	31468767	31468767	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144973	exon10	c.G2360T	p.R787M	.	.	.
C12orf35	55196	broad.mit.edu	36	12	32025863	32025863	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018169	exon4	c.T707C	p.F236S	.	.	.
TSPAN9	10867	broad.mit.edu	36	12	3262538	3262538	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001168320	exon8	c.G715A	p.A239T	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40235768	40235768	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon7	c.T1304G	p.V435G	.	.	.
PDZRN4	29951	broad.mit.edu	36	12	40252650	40252650	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164595	exon10	c.A1802G	p.Q601R	.	.	.
CCDC77	84318	broad.mit.edu	36	12	420316	420316	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130148	exon10	c.C1117T	p.R373C	.	.	.
SCN8A	6334	broad.mit.edu	36	12	50379667	50379667	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014191	exon7	c.G753A	p.L251L	.	.	.
KRT5	3852	broad.mit.edu	36	12	51200026	51200026	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000424	exon1	c.G322A	p.G108S	.	.	.
KRT74	121391	broad.mit.edu	36	12	51253611	51253611	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175053	exon1	c.A218G	p.Y73C	.	.	.
ESPL1	9700	broad.mit.edu	36	12	51969624	51969624	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012291	exon22	c.C5092T	p.R1698C	.	.	.
TARBP2	6895	broad.mit.edu	36	12	52183776	52183776	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004178	exon4	c.C276T	p.P92P	 TARBP2,central_nervous_system,brain,Substitution - Missense,+1 	.	.
KIAA0748	9840	broad.mit.edu	36	12	53643974	53643974	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098815	exon8	c.A474C	p.Q158H	.	.	.
OR6C74	254783	broad.mit.edu	36	12	53928114	53928114	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005490	exon1	c.A776G	p.K259R	.	.	.
OR6C65	403282	broad.mit.edu	36	12	54081316	54081316	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005518	exon1	c.T737G	p.V246G	.	.	.
MYL6B	140465	broad.mit.edu	36	12	54835193	54835193	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199629	exon4	c.G290A	p.G97D	.	.	.
MYL6	4637	broad.mit.edu	36	12	54840144	54840144	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021019	exon4	c.G294A	p.K98K	.	.	.
SMARCC2	6601	broad.mit.edu	36	12	54851932	54851932	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139067	exon21	c.C1983T	p.R661R	.	.	.
ANKRD52	283373	broad.mit.edu	36	12	54934674	54934674	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173595	exon7	c.T648C	p.S216S	.	.	.
TIMELESS	8914	broad.mit.edu	36	12	55101494	55101494	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003920	exon23	c.C2776T	p.R926X	.	.	.
DCTN2	10540	broad.mit.edu	36	12	56212827	56212827	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006400	exon10	c.G809A	p.R270H	.	.	.
AVIL	10677	broad.mit.edu	36	12	56483323	56483323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006576	exon15	c.G1936A	p.V646M	.	.	.
CD27	939	broad.mit.edu	36	12	6429727	6429727	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001242	exon3	c.G396A	p.S132S	.	.	.
HELB	92797	broad.mit.edu	36	12	64990065	64990065	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033647	exon4	c.G1090A	p.A364T	.	.	.
CHD4	1108	broad.mit.edu	36	12	6557542	6557542	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001273	exon36	c.T5142C	p.N1714N	.	.	.
C12orf53	196500	broad.mit.edu	36	12	6675943	6675943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153685	exon4	c.C532T	p.P178S	.	.	.
RAP1B	5908	broad.mit.edu	36	12	67330493	67330493	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015646	exon3	c.C104T	p.T35M	.	.	.
TBC1D15	64786	broad.mit.edu	36	12	70564953	70564953	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146214	exon6	c.T463C	p.W155R	.	.	.
TPH2	121278	broad.mit.edu	36	12	70711669	70711669	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173353	exon11	c.T1400C	p.V467A	.	.	.
CD163	9332	broad.mit.edu	36	12	7540896	7540896	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203416	exon5	c.C879T	p.D293D	.	.	.
C12orf74	338809	broad.mit.edu	36	12	91624682	91624682	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037671	exon2	c.G144A	p.S48S	.	.	.
CRADD	8738	broad.mit.edu	36	12	92596854	92596854	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003805	exon2	c.T173C	p.L58P	.	.	.
USP44	84101	broad.mit.edu	36	12	94450929	94450929	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042403	exon2	c.T1235C	p.L412P	.	.	.
SLC25A3	5250	broad.mit.edu	36	12	97513750	97513750	+	Missense_Mutation	SNP	G	A	A	rs11544654	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002635	exon3	c.G272A	p.R91H	.	.	.
GAS2L3	283431	broad.mit.edu	36	12	99542713	99542713	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_174942	exon10	c.A1999G	p.S667G	.	.	.
LRP6	4040	broad.mit.edu	36	12	12288799	12288800	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TT	TT	TT	-	TT	TT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002336	exon2	c.112_113del	p.38_38del	.	.	.
C12orf11	55726	broad.mit.edu	36	12	26960293	26960293	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018164	exon11	c.1157delT	p.L386fs	.	.	.
LRRK2	120892	broad.mit.edu	36	12	39000137	39000137	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198578	exon34	c.4908delA	p.S1636fs	.	.	.
ANO6	196527	broad.mit.edu	36	12	44109298	44109298	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001025356	exon20	c.2670delG	p.M890fs	.	.	.
AMIGO2	347902	broad.mit.edu	36	12	45758652	45758652	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_181847	exon2	c.401delA	p.N134fs	.	.	.
SENP1	29843	broad.mit.edu	36	12	46745163	46745163	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014554	exon12	c.1227delA	p.K409fs	.	.	.
XPOT	11260	broad.mit.edu	36	12	63099022	63099022	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007235	exon6	c.370delT	p.F124fs	.	.	.
ATN1	1822	broad.mit.edu	36	12	6915915	6915915	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007026	exon5	c.1224delC	p.Y408fs	.	.	.
LGR5	8549	broad.mit.edu	36	12	70233151	70233151	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003667	exon5	c.460delC	p.P154fs	.	.	.
C1RL	51279	broad.mit.edu	36	12	7140542	7140542	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_016546	exon6	c.1051delC	p.L351fs	.	.	.
NAV3	89795	broad.mit.edu	36	12	76924937	76924937	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014903	exon8	c.1488delA	p.P496fs	.	.	.
UHRF1BP1L	23074	broad.mit.edu	36	12	98975989	98975989	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015054	exon14	c.3197delG	p.S1066fs	.	.	.
ERCC5	2073	broad.mit.edu	36	13	102316241	102316241	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000123	exon9	c.T2178C	p.H726H	.	.	.
RAB20	55647	broad.mit.edu	36	13	109974076	109974076	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017817	exon2	c.A642G	p.S214S	.	.	.
TUBGCP3	10426	broad.mit.edu	36	13	112261653	112261653	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006322	exon4	c.G314A	p.R105H	.	.	.
SGCG	6445	broad.mit.edu	36	13	22792858	22792858	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000231	exon7	c.C661T	p.L221F	.	.	.
FLT1	2321	broad.mit.edu	36	13	27899431	27899431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002019	exon10	c.C1301T	p.A434V	.	.	.
SLC7A1	6541	broad.mit.edu	36	13	29008280	29008280	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003045	exon3	c.C46T	p.R16W	.	.	.
KATNAL1	84056	broad.mit.edu	36	13	29682499	29682499	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032116	exon10	c.G1228A	p.E410K	.	.	.
CSNK1A1L	122011	broad.mit.edu	36	13	36576718	36576718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145203	exon1	c.G676A	p.A226T	.	.	.
POSTN	10631	broad.mit.edu	36	13	37046762	37046762	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006475	exon17	c.A2036T	p.E679V	.	.	.
TRPC4	7223	broad.mit.edu	36	13	37109683	37109683	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135956	exon10	c.C2096A	p.S699Y	.	.	.
FAM124A	220108	broad.mit.edu	36	13	50723736	50723736	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145019	exon4	c.C340T	p.L114L	.	.	.
PCDH9	5101	broad.mit.edu	36	13	66700320	66700320	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020403	exon2	c.T254G	p.I85S	.	.	.
MYCBP2	23077	broad.mit.edu	36	13	76640632	76640632	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015057	exon40	c.A6046G	p.T2016A	.	.	.
UGGT2	55757	broad.mit.edu	36	13	95306431	95306431	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020121	exon34	c.T3990C	p.I1330I	.	.	.
CLYBL	171425	broad.mit.edu	36	13	99309213	99309213	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206808	exon3	c.C347T	p.A116V	.	.	.
FAM70B	348013	broad.mit.edu	36	13	113599170	113599170	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182614	exon9	c.878delC	p.P293fs	.	.	.
RNF17	56163	broad.mit.edu	36	13	24260211	24260211	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184993	exon7	c.697delA	p.K233fs	.	.	.
FARP1	10160	broad.mit.edu	36	13	97663539	97663539	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005766	exon2	c.42delG	p.L14fs	.	.	.
DIO3	1735	broad.mit.edu	36	14	101098264	101098264	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001362	exon1	c.C678T	p.V226V	.	.	.
KLC1	3831	broad.mit.edu	36	14	103193754	103193754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130107	exon3	c.C380T	p.T127M	.	.	.
MMP14	4323	broad.mit.edu	36	14	22382407	22382407	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004995	exon5	c.A790G	p.M264V	.	.	.
PSMB11	122706	broad.mit.edu	36	14	22581891	22581891	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099780	exon1	c.G617A	p.R206H	.	.	.
ACIN1	22985	broad.mit.edu	36	14	22619350	22619350	+	Missense_Mutation	SNP	G	A	A	rs12589748	byCluster	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164814	exon6	c.C1208T	p.A403V	.	.	.
MYH7	4625	broad.mit.edu	36	14	22969978	22969978	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000257	exon10	c.C867T	p.I289I	.	.	.
AP1G2	8906	broad.mit.edu	36	14	23105668	23105668	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003917	exon3	c.T272C	p.M91T	.	.	.
DCAF11	80344	broad.mit.edu	36	14	23658837	23658837	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001163484	exon11	c.T984C	p.D328D	.	.	.
CLEC14A	161198	broad.mit.edu	36	14	37794282	37794282	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175060	exon1	c.G697A	p.A233T	.	.	.
FANCM	57697	broad.mit.edu	36	14	44727843	44727843	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020937	exon20	c.T4868G	p.V1623G	.	.	.
NIN	51199	broad.mit.edu	36	14	50306881	50306881	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182944	exon12	c.G1409A	p.R470Q	.	.	.
ATG14	22863	broad.mit.edu	36	14	54906230	54906230	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014924	exon10	c.C1339A	p.P447T	.	.	.
C14orf105	55195	broad.mit.edu	36	14	57017196	57017196	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018168	exon5	c.T525C	p.H175H	.	.	.
GPR135	64582	broad.mit.edu	36	14	59000519	59000519	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022571	exon1	c.C1179T	p.N393N	.	.	.
SPTB	6710	broad.mit.edu	36	14	64318940	64318940	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024858	exon19	c.G4087A	p.E1363K	.	.	.
GPHN	10243	broad.mit.edu	36	14	66217614	66217614	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024218	exon2	c.G101A	p.R34H	.	.	.
PTGR2	145482	broad.mit.edu	36	14	73416535	73416535	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146154	exon7	c.C754A	p.L252M	.	.	.
TTLL5	23093	broad.mit.edu	36	14	75312907	75312907	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015072	exon23	c.T2348G	p.V783G	.	.	.
VIPAR	63894	broad.mit.edu	36	14	76987346	76987346	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022067	exon5	c.T280C	p.F94L	.	.	.
NRXN3	9369	broad.mit.edu	36	14	78504381	78504381	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004796	exon11	c.C1962A	p.R654R	.	.	.
EML5	161436	broad.mit.edu	36	14	88200686	88200686	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183387	exon23	c.A3313G	p.S1105G	.	.	.
TRIP11	9321	broad.mit.edu	36	14	91508904	91508904	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004239	exon20	c.C5629T	p.P1877S	.	.	.
SLC24A4	123041	broad.mit.edu	36	14	91985272	91985272	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153646	exon10	c.A839G	p.D280G	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93778409	93778409	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon11	c.T1177G	p.F393V	.	.	.
PPP4R4	57718	broad.mit.edu	36	14	93803095	93803095	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058237	exon23	c.A2425G	p.K809E	.	.	.
SERPINA4	5267	broad.mit.edu	36	14	94105520	94105520	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006215	exon5	c.T1119C	p.A373A	.	.	.
SETD3	84193	broad.mit.edu	36	14	98935209	98935209	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032233	exon13	c.A1345G	p.K449E	.	.	.
CDH24	64403	broad.mit.edu	36	14	22594154	22594154	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_022478	exon3	c.450delT	p.F150fs	.	.	.
HOMEZ	57594	broad.mit.edu	36	14	22815150	22815150	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020834	exon2	c.1127delT	p.L376fs	.	.	.
PABPN1	8106	broad.mit.edu	36	14	22863319	22863319	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001199864	exon8	c.943delC	p.P315fs	.	.	.
NIN	51199	broad.mit.edu	36	14	50294118	50294118	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182944	exon18	c.3380delT	p.L1127fs	.	.	.
C15orf2	23742	broad.mit.edu	36	15	22472569	22472569	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018958	exon1	c.A462C	p.Q154H	.	.	.
GABRB3	2562	broad.mit.edu	36	15	24417620	24417620	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021912	exon4	c.A395G	p.H132R	.	.	.
GABRG3	2567	broad.mit.edu	36	15	25451588	25451588	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033223	exon10	c.A1370G	p.N457S	.	.	.
HERC2	8924	broad.mit.edu	36	15	26035537	26035537	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon88	c.T13478G	p.L4493R	.	.	.
HERC2	8924	broad.mit.edu	36	15	26152474	26152474	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon28	c.C4282T	p.P1428S	.	.	.
HERC2	8924	broad.mit.edu	36	15	26157437	26157437	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004667	exon24	c.T3654C	p.H1218H	.	.	.
TJP1	7082	broad.mit.edu	36	15	27788294	27788294	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175610	exon24	c.A4371G	p.R1457R	.	.	.
CHST14	113189	broad.mit.edu	36	15	38551704	38551704	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130468	exon1	c.G1000A	p.E334K	.	.	.
EHD4	30844	broad.mit.edu	36	15	39980288	39980288	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139265	exon6	c.C1473T	p.A491A	.	.	.
TTBK2	146057	broad.mit.edu	36	15	40832713	40832713	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_173500	exon14	c.G2023T	p.A675S	.	.	.
TGM5	9333	broad.mit.edu	36	15	41339938	41339938	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004245	exon2	c.C142T	p.R48W	.	.	.
HDC	3067	broad.mit.edu	36	15	48332257	48332257	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002112	exon8	c.G794A	p.R265H	.	.	.
TMOD2	29767	broad.mit.edu	36	15	49877722	49877722	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014548	exon8	c.A769G	p.T257A	.	.	.
MYO5A	4644	broad.mit.edu	36	15	50467343	50467343	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000259	exon14	c.A1727G	p.Q576R	.	.	.
MNS1	55329	broad.mit.edu	36	15	54535916	54535916	+	De_novo_Start_InFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018365	exon3	c.C321T	p.D107D	.	.	.
CGNL1	84952	broad.mit.edu	36	15	55596338	55596338	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032866	exon9	c.G2472A	p.V824V	.	.	.
VPS13C	54832	broad.mit.edu	36	15	60114461	60114461	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017684	exon4	c.T270C	p.V90V	.	.	.
PDCD7	10081	broad.mit.edu	36	15	63199142	63199142	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005707	exon3	c.C1213T	p.R405C	.	.	.
DENND4A	10260	broad.mit.edu	36	15	63751194	63751194	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144823	exon25	c.A4451G	p.Y1484C	.	.	.
ITGA11	22801	broad.mit.edu	36	15	66404619	66404619	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004439	exon18	c.C2226T	p.Y742Y	.	.	.
MYO9A	4649	broad.mit.edu	36	15	69978129	69978129	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006901	exon25	c.A3769G	p.R1257G	.	.	.
PKM2	5315	broad.mit.edu	36	15	70286649	70286649	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002654	exon7	c.G860T	p.S287I	.	.	.
NEO1	4756	broad.mit.edu	36	15	71205952	71205952	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172623	exon4	c.T866C	p.L289P	.	.	.
CCDC33	80125	broad.mit.edu	36	15	72360093	72360093	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025055	exon9	c.G921A	p.Q307Q	.	.	.
LMAN1L	79748	broad.mit.edu	36	15	72904961	72904961	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021819	exon14	c.C1543A	p.L515M	.	.	.
ACSBG1	23205	broad.mit.edu	36	15	76259075	76259075	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199377	exon10	c.G1344A	p.A448A	.	.	.
ADAMTSL3	57188	broad.mit.edu	36	15	82351135	82351135	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207517	exon12	c.G1262A	p.R421H	.	.	.
AKAP13	11214	broad.mit.edu	36	15	84087795	84087795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006738	exon36	c.G8139A	p.S2713S	.	.	.
KIF7	374654	broad.mit.edu	36	15	87972800	87972800	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198525	exon19	c.C3886T	p.R1296W	.	.	.
SV2B	9899	broad.mit.edu	36	15	89596231	89596231	+	Silent	SNP	C	T	T	rs61731608	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014848	exon4	c.C630T	p.I210I	.	.	.
ST8SIA2	8128	broad.mit.edu	36	15	90778608	90778608	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006011	exon3	c.A289G	p.R97G	.	.	.
MCTP2	55784	broad.mit.edu	36	15	92743225	92743225	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159643	exon14	c.T1820C	p.L607P	.	.	.
HERC2	8924	broad.mit.edu	36	15	26191645	26191646	+	Frame_Shift_Del	DEL	CT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	CT	CT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004667	exon8	c.900_901del	p.300_301del	.	.	.
C15orf55	256646	broad.mit.edu	36	15	32434563	32434563	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175741	exon6	c.1328delA	p.E443fs	.	.	.
NOX5	79400	broad.mit.edu	36	15	67118280	67118280	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184779	exon9	c.1317delT	p.P439fs	.	.	.
MAN2C1	4123	broad.mit.edu	36	15	73438005	73438005	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006715	exon20	c.2254delG	p.V752fs	.	.	.
AKAP13	11214	broad.mit.edu	36	15	83923991	83923991	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006738	exon7	c.1688delA	p.E563fs	.	.	.
IQGAP1	8826	broad.mit.edu	36	15	88811730	88811732	+	In_Frame_Del	DEL	TAT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TAT	TAT	TAT	-	TAT	TAT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003870	exon18	c.2080_2082del	p.694_694del	.	.	.
MYH11	4629	broad.mit.edu	36	16	15726049	15726049	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040114	exon31	c.G4093A	p.A1365T	.	.	.
ABCC6	368	broad.mit.edu	36	16	16151994	16151994	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171	exon30	c.G4345A	p.A1449T	.	.	.
C16orf62	57020	broad.mit.edu	36	16	19601113	19601113	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020314	exon28	c.C2694A	p.T898T	.	.	.
UQCRC2	7385	broad.mit.edu	36	16	21901991	21901991	+	Nonstop_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003366	exon14	c.T1360C	p.X454Q	.	.	.
VWA3A	146177	broad.mit.edu	36	16	22057272	22057272	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173615	exon22	c.C2230A	p.L744I	.	.	.
COG7	91949	broad.mit.edu	36	16	23337569	23337569	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153603	exon8	c.G1090A	p.D364N	.	.	.
GGA2	23062	broad.mit.edu	36	16	23401758	23401758	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015044	exon9	c.C867T	p.D289D	.	.	.
TNRC6A	27327	broad.mit.edu	36	16	24712398	24712398	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014494	exon7	c.A3279C	p.E1093D	.	.	.
ZKSCAN2	342357	broad.mit.edu	36	16	25158746	25158746	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012981	exon7	c.A2796C	p.K932N	.	.	.
IL21R	50615	broad.mit.edu	36	16	27367838	27367838	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181079	exon10	c.G1416C	p.K472N	.	.	.
SRRM2	23524	broad.mit.edu	36	16	2755679	2755679	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016333	exon11	c.C5149T	p.R1717C	.	.	.
KIAA0556	23247	broad.mit.edu	36	16	27668666	27668666	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015202	exon16	c.G2884A	p.A962T	.	.	.
CCDC101	112869	broad.mit.edu	36	16	28509471	28509471	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138414	exon8	c.C585T	p.I195I	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29795758	29795758	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114100	exon10	c.G1582A	p.D528N	.	.	.
SEZ6L2	26470	broad.mit.edu	36	16	29796198	29796198	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114100	exon9	c.C1462T	p.R488C	.	.	.
SETD1A	9739	broad.mit.edu	36	16	30883531	30883531	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014712	exon7	c.G967A	p.A323T	.	.	.
ITGAM	3684	broad.mit.edu	36	16	31180597	31180597	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000632	exon2	c.G112A	p.V38M	.	.	.
ZNF267	10308	broad.mit.edu	36	16	31803400	31803400	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003414	exon2	c.G84A	p.L28L	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3374775	3374775	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017810	exon5	c.C283T	p.R95C	.	.	.
ZNF434	54925	broad.mit.edu	36	16	3380090	3380090	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017810	exon4	c.A36T	p.Q12H	.	.	.
CLUAP1	23059	broad.mit.edu	36	16	3526167	3526167	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024793	exon8	c.C639T	p.D213D	.	.	.
CREBBP	1387	broad.mit.edu	36	16	3760936	3760936	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004380	exon14	c.A2516G	p.Q839R	.	.	.
GPT2	84706	broad.mit.edu	36	16	45513738	45513738	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142466	exon9	c.G821A	p.R274H	.	.	.
NETO2	81831	broad.mit.edu	36	16	45719896	45719896	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018092	exon4	c.C322T	p.R108X	.	.	.
ABCC12	94160	broad.mit.edu	36	16	46735377	46735377	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033226	exon2	c.G220A	p.V74I	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46791803	46791803	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145186	exon15	c.T1967G	p.L656R	.	.	.
ABCC11	85320	broad.mit.edu	36	16	46806695	46806695	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145186	exon8	c.G1013A	p.R338H	.	.	.
PAPD5	64282	broad.mit.edu	36	16	48802793	48802793	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040284	exon3	c.A652G	p.K218E	.	.	.
SALL1	6299	broad.mit.edu	36	16	49733151	49733151	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002968	exon2	c.C483T	p.G161G	.	.	.
MT1M	4499	broad.mit.edu	36	16	55225177	55225177	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176870	exon3	c.C108T	p.C36C	.	.	.
NLRC5	84166	broad.mit.edu	36	16	55625062	55625062	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032206	exon12	c.G2523A	p.Q841Q	.	.	.
FAM192A	80011	broad.mit.edu	36	16	55745831	55745831	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024946	exon7	c.C637T	p.P213S	.	.	.
RSPRY1	89970	broad.mit.edu	36	16	55822188	55822188	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133368	exon12	c.C1338T	p.N446N	.	.	.
SLC9A5	6553	broad.mit.edu	36	16	65846434	65846434	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004594	exon3	c.T500C	p.V167A	.	.	.
FAM65A	79567	broad.mit.edu	36	16	66133830	66133830	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001193522	exon13	c.C1652A	p.T551N	.	.	.
C16orf48	84080	broad.mit.edu	36	16	66256559	66256559	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032140	exon3	c.G294T	p.K98N	.	.	.
GFOD2	81577	broad.mit.edu	36	16	66266861	66266861	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030819	exon3	c.G856T	p.A286S	.	.	.
SNTB2	6645	broad.mit.edu	36	16	67891164	67891164	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006750	exon6	c.C1516T	p.P506S	.	.	.
DDX19A	55308	broad.mit.edu	36	16	68958084	68958084	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018332	exon9	c.T839C	p.V280A	.	.	.
HYDIN	54768	broad.mit.edu	36	16	69579463	69579463	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032821	exon27	c.A4056G	p.G1352G	.	.	.
CALB2	794	broad.mit.edu	36	16	69975429	69975429	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007088	exon7	c.G533T	p.R178L	.	.	.
PHLPP2	23035	broad.mit.edu	36	16	70240302	70240302	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015020	exon18	c.G3964T	p.A1322S	.	.	.
CTRB2	440387	broad.mit.edu	36	16	73795626	73795626	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001025200	exon7	c.G726A	p.T242T	.	.	.
CHST5	23563	broad.mit.edu	36	16	74121257	74121257	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024533	exon3	c.C527T	p.T176M	.	.	.
ADAT1	23536	broad.mit.edu	36	16	74191706	74191706	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012091	exon11	c.C1418T	p.A473V	.	.	.
PKD1L2	114780	broad.mit.edu	36	16	79708630	79708630	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052892	exon39	c.G6619A	p.A2207T	.	.	.
KIAA0182	23199	broad.mit.edu	36	16	84259395	84259395	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134473	exon13	c.A2967G	p.P989P	.	.	.
GRIN2A	2903	broad.mit.edu	36	16	9765311	9765311	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134408	exon13	c.T3591G	p.G1197G	.	.	.
RPGRIP1L	23322	broad.mit.edu	36	16	52277900	52277901	+	Frame_Shift_Del	DEL	TT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TT	TT					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127897	exon6	c.721_722del	p.241_241del	.	.	.
HTA	283902	broad.mit.edu	36	16	71684568	71684568	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
MYH1	4619	broad.mit.edu	36	17	10349259	10349259	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005963	exon21	c.C2381A	p.A794D	.	.	.
MAP2K4	6416	broad.mit.edu	36	17	11957343	11957343	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003010	exon7	c.G754A	p.G252R	.	.	.
ELAC2	60528	broad.mit.edu	36	17	12837804	12837804	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165962	exon22	c.C2058T	p.S686S	.	.	.
COX10	1352	broad.mit.edu	36	17	14036081	14036081	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001303	exon6	c.C746T	p.A249V	.	.	.
NCOR1	9611	broad.mit.edu	36	17	15908977	15908977	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190440	exon33	c.T5081A	p.I1694N	.	.	.
CCDC144A	9720	broad.mit.edu	36	17	16553231	16553231	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014695	exon5	c.C1135A	p.P379T	.	.	.
TOP3A	7156	broad.mit.edu	36	17	18121792	18121792	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004618	exon18	c.C2749T	p.R917C	.	.	.
KIAA0100	9703	broad.mit.edu	36	17	23971062	23971062	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014680	exon30	c.G5463A	p.V1821V	.	.	.
MYO18A	399687	broad.mit.edu	36	17	24466833	24466833	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203318	exon12	c.G2202T	p.E734D	.	.	.
MYO18A	399687	broad.mit.edu	36	17	24517457	24517457	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_203318	exon2	c.G628A	p.V210M	.	.	.
CORO6	84940	broad.mit.edu	36	17	24967925	24967925	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032854	exon7	c.T925C	p.F309L	.	.	.
SSH2	85464	broad.mit.edu	36	17	25054200	25054200	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033389	exon3	c.C114T	p.S38S	.	.	.
CCDC55	84081	broad.mit.edu	36	17	25536801	25536801	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032141	exon7	c.G1660C	p.E554Q	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26185639	26185639	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon2	c.C414T	p.S138S	.	.	.
ATAD5	79915	broad.mit.edu	36	17	26206429	26206429	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024857	exon7	c.A2593G	p.T865A	.	.	.
MRM1	79922	broad.mit.edu	36	17	32032751	32032751	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024864	exon1	c.G399T	p.E133D	.	.	.
TRPV1	7442	broad.mit.edu	36	17	3423842	3423842	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018727	exon13	c.C1937T	p.A646V	.	.	.
PLXDC1	57125	broad.mit.edu	36	17	34515715	34515715	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020405	exon7	c.G729A	p.P243P	.	.	.
AOC3	8639	broad.mit.edu	36	17	38257691	38257691	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003734	exon1	c.C805T	p.R269C	.	.	.
ZZEF1	23140	broad.mit.edu	36	17	3955818	3955818	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015113	exon7	c.T1312A	p.S438T	.	.	.
SLC4A1	6521	broad.mit.edu	36	17	39691491	39691491	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000342	exon10	c.T903C	p.A301A	.	.	.
FMNL1	752	broad.mit.edu	36	17	40671730	40671730	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005892	exon10	c.A911G	p.H304R	.	.	.
KIAA1267	284058	broad.mit.edu	36	17	41466365	41466365	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015443	exon13	c.C2765T	p.A922V	.	.	.
MYBBP1A	10514	broad.mit.edu	36	17	4395335	4395335	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014520	exon16	c.G2128A	p.D710N	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45618203	45618203	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000088	exon50	c.G4183T	p.E1395X	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45618756	45618756	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000088	exon49	c.A3926G	p.Q1309R	.	.	.
COL1A1	1277	broad.mit.edu	36	17	45632266	45632266	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000088	exon2	c.G145C	p.D49H	.	.	.
VPS53	55275	broad.mit.edu	36	17	478108	478108	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128159	exon9	c.G801A	p.E267E	.	.	.
SCPEP1	59342	broad.mit.edu	36	17	52417741	52417741	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021626	exon3	c.G229A	p.G77S	.	.	.
DDX5	1655	broad.mit.edu	36	17	59927212	59927212	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004396	exon12	c.T1358C	p.V453A	.	.	.
CACNG1	786	broad.mit.edu	36	17	62471431	62471431	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000727	exon1	c.G193A	p.D65N	.	.	.
ABCA8	10351	broad.mit.edu	36	17	64411109	64411109	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007168	exon18	c.G2405A	p.R802Q	.	.	.
SLC39A11	201266	broad.mit.edu	36	17	68539397	68539397	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159770	exon4	c.G199A	p.A67T	.	.	.
USH1G	124590	broad.mit.edu	36	17	70428182	70428182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173477	exon2	c.G344A	p.R115H	.	.	.
RECQL5	9400	broad.mit.edu	36	17	71135106	71135106	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004259	exon20	c.C2967A	p.P989P	.	.	.
YBX2	51087	broad.mit.edu	36	17	7134340	7134340	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015982	exon5	c.G698A	p.R233Q	.	.	.
TRIM47	91107	broad.mit.edu	36	17	71382552	71382552	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033452	exon6	c.C1524T	p.Y508Y	.	.	.
POLR2A	5430	broad.mit.edu	36	17	7340825	7340825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000937	exon5	c.C556T	p.R186W	.	.	.
TNRC6C	57690	broad.mit.edu	36	17	73594533	73594533	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018996	exon14	c.C3566T	p.A1189V	.	.	.
TMC8	147138	broad.mit.edu	36	17	73642178	73642178	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152468	exon8	c.C925A	p.L309M	.	.	.
SLC26A11	284129	broad.mit.edu	36	17	75814236	75814236	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166349	exon5	c.G519A	p.L173L	.	.	.
RPTOR	57521	broad.mit.edu	36	17	76472226	76472226	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020761	exon16	c.C1701T	p.N567N	.	.	.
ALOXE3	59344	broad.mit.edu	36	17	7952592	7952592	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001165960	exon13	c.G1999A	p.A667T	.	.	.
PFAS	5198	broad.mit.edu	36	17	8113249	8113249	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012393	exon28	c.C3959T	p.S1320F	.	.	.
PIK3R5	23533	broad.mit.edu	36	17	8724753	8724753	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014308	exon19	c.G2571A	p.P857P	.	.	.
DHRS7C	201140	broad.mit.edu	36	17	9635305	9635305	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105571	exon1	c.A22G	p.M8V	.	.	.
GAS7	8522	broad.mit.edu	36	17	9863859	9863859	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201432	exon2	c.G84A	p.S28S	.	.	.
JUP	3728	broad.mit.edu	36	17	37165585	37165585	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021991	exon14	c.2175delC	p.P725fs	.	.	.
GEMIN4	50628	broad.mit.edu	36	17	597732	597734	+	In_Frame_Del	DEL	CCA	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	CCA	CCA	CCA	-	CCA	CCA	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015721	exon2	c.299_301del	p.100_101del	.	.	.
LRRC37A3	374819	broad.mit.edu	36	17	60286814	60286814	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199340	exon11	c.3912delA	p.K1304fs	.	.	.
DVL2	1856	broad.mit.edu	36	17	7070318	7070318	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004422	exon15	c.1801delG	p.A601fs	.	.	.
TMEM105	284186	broad.mit.edu	36	17	76902298	76902298	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178520	exon3	c.138delC	p.P46fs	.	.	.
LRRC30	339291	broad.mit.edu	36	18	7221574	7221575	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105581	exon1	c.438_439insT	p.S146fs	.	.	.
CEP192	55125	broad.mit.edu	36	18	13046463	13046463	+	Nonsense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032142	exon19	c.G3874T	p.G1292X	.	.	.
MC2R	4158	broad.mit.edu	36	18	13875243	13875243	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000529	exon2	c.T275G	p.L92R	.	.	.
AQP4	361	broad.mit.edu	36	18	22696283	22696283	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001650	exon2	c.C308T	p.A103V	.	.	.
DSG1	1828	broad.mit.edu	36	18	27167595	27167595	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001942	exon7	c.G730T	p.G244C	.	.	.
SMCHD1	23347	broad.mit.edu	36	18	2765769	2765769	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015295	exon42	c.C5213T	p.A1738V	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32410483	32410483	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon6	c.C583A	p.L195M	.	.	.
FHOD3	80206	broad.mit.edu	36	18	32459577	32459577	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025135	exon10	c.C1063T	p.R355W	.	.	.
ST8SIA5	29906	broad.mit.edu	36	18	42522860	42522860	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013305	exon4	c.G332A	p.C111Y	.	.	.
ZBTB7C	201501	broad.mit.edu	36	18	43820603	43820603	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039360	exon2	c.G874A	p.E292K	.	.	.
CCDC11	220136	broad.mit.edu	36	18	46031977	46031977	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145020	exon4	c.G649A	p.A217T	.	.	.
MAPK4	5596	broad.mit.edu	36	18	46444344	46444344	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002747	exon2	c.C18T	p.D6D	.	.	.
ZNF532	55205	broad.mit.edu	36	18	54752669	54752669	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018181	exon5	c.C2371A	p.L791M	.	.	.
ZCCHC2	54877	broad.mit.edu	36	18	58368565	58368565	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017742	exon5	c.C1205G	p.P402R	.	.	.
ZNF407	55628	broad.mit.edu	36	18	70904173	70904173	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017757	exon8	c.G5508A	p.A1836A	.	.	.
CEP76	79959	broad.mit.edu	36	18	12689829	12689829	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_024899	exon3	c.295delA	p.T99fs	.	.	.
KIAA1632	57724	broad.mit.edu	36	18	41710227	41710228	+	Frame_Shift_Del	DEL	AC	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AC	AC	AC	-	AC	AC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020964	exon35	c.6020_6021del	p.2007_2007del	.	.	.
PIGN	23556	broad.mit.edu	36	18	57908720	57908721	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_176787	exon24	c.2251_2252del	p.751_751del	.	.	.
TMPRSS9	360200	broad.mit.edu	36	19	2369094	2369095	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_182973	exon12	c.2010_2011insA	p.M670fs	.	.	.
MIA	8190	broad.mit.edu	36	19	45973371	45973372	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006533	exon1	c.84_85insA	p.P28fs	.	.	.
ABCA7	10347	broad.mit.edu	36	19	1013246	1013246	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019112	exon42	c.G5646T	p.L1882L	.	.	.
ICAM1	3383	broad.mit.edu	36	19	10246645	10246645	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000201	exon2	c.T272C	p.M91T	.	.	.
ICAM4	3386	broad.mit.edu	36	19	10259784	10259784	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039132	exon3	c.G743T	p.G248V	.	.	.
ILF3	3609	broad.mit.edu	36	19	10660329	10660329	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012218	exon19	c.C2526T	p.G842G	.	.	.
ELAVL3	1995	broad.mit.edu	36	19	11429982	11429982	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001420	exon5	c.G607A	p.A203T	.	.	.
ECSIT	51295	broad.mit.edu	36	19	11485780	11485780	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142464	exon3	c.G353A	p.R118Q	.	.	.
ZNF44	51710	broad.mit.edu	36	19	12244358	12244358	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016264	exon4	c.G1712A	p.R571H	.	.	.
ZNF791	163049	broad.mit.edu	36	19	12600566	12600566	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153358	exon4	c.G1223C	p.G408A	.	.	.
MAN2B1	4125	broad.mit.edu	36	19	12633184	12633184	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000528	exon7	c.T916C	p.Y306H	.	.	.
ILVBL	10994	broad.mit.edu	36	19	15088117	15088117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006844	exon12	c.G1317A	p.M439I	.	.	.
AKAP8	10270	broad.mit.edu	36	19	15333932	15333933	+	Missense_Mutation	DNP	CC	GG	GG	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	CC	CC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_005858	exon10	c.1290_1291CC	.	.	.	.
MED26	9441	broad.mit.edu	36	19	16548291	16548291	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004831	exon3	c.C1350T	p.H450H	.	.	.
CPAMD8	27151	broad.mit.edu	36	19	16923785	16923785	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015692	exon20	c.C2643T	p.C881C	.	.	.
GDF15	9518	broad.mit.edu	36	19	18358004	18358004	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004864	exon1	c.C5A	p.P2H	.	.	.
ZNF101	94039	broad.mit.edu	36	19	19651016	19651016	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033204	exon4	c.G218A	p.R73H	.	.	.
SLC39A3	29985	broad.mit.edu	36	19	2683911	2683911	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144564	exon3	c.G783A	p.A261A	.	.	.
ZNF536	9745	broad.mit.edu	36	19	35628279	35628279	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014717	exon2	c.G1970A	p.R657H	.	.	.
MAG	4099	broad.mit.edu	36	19	40492648	40492648	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199216	exon8	c.C1188T	p.C396C	.	.	.
DMKN	93099	broad.mit.edu	36	19	40682712	40682712	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033317	exon13	c.G1347T	p.K449N	.	.	.
ATP4A	495	broad.mit.edu	36	19	40743141	40743141	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000704	exon6	c.C751T	p.R251C	.	.	.
HAUS5	23354	broad.mit.edu	36	19	40802991	40802991	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015302	exon17	c.C1573A	p.L525M	.	.	.
ANKRD24	170961	broad.mit.edu	36	19	4167803	4167803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133475	exon18	c.C1646T	p.S549L	.	.	.
ZNF567	163081	broad.mit.edu	36	19	41902203	41902203	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152603	exon4	c.C644T	p.A215V	.	.	.
ZNF573	126231	broad.mit.edu	36	19	42921619	42921619	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172691	exon5	c.T1606C	p.Y536H	.	.	.
RASGRP4	115727	broad.mit.edu	36	19	43595179	43595179	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146206	exon10	c.T1086C	p.P362P	.	.	.
LGALS7B	653499	broad.mit.edu	36	19	43973246	43973246	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042507	exon3	c.C173T	p.S58L	.	.	.
TIMM50	92609	broad.mit.edu	36	19	44670631	44670631	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001563	exon9	c.G1096A	p.A366T	.	.	.
CYP2A13	1553	broad.mit.edu	36	19	46286281	46286281	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000766	exon1	c.C65A	p.S22X	.	.	.
ZNF526	116115	broad.mit.edu	36	19	47421221	47421221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133444	exon3	c.G826A	p.G276R	.	.	.
CIC	23152	broad.mit.edu	36	19	47483895	47483895	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015125	exon6	c.G859T	p.G287W	.	.	.
LIPE	3991	broad.mit.edu	36	19	47604299	47604299	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005357	exon3	c.C1435T	p.R479W	.	.	.
ZNF284	342909	broad.mit.edu	36	19	49282176	49282176	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037813	exon5	c.G705C	p.Q235H	.	.	.
CEACAM20	125931	broad.mit.edu	36	19	49716592	49716592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001102597	exon5	c.C786T	p.S262S	.	.	.
CEACAM19	56971	broad.mit.edu	36	19	49868062	49868062	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127893	exon2	c.A410G	p.E137G	.	.	.
OPA3	80207	broad.mit.edu	36	19	50748725	50748725	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_025136	exon2	c.G427C	p.A143P	.	.	.
PPP5C	5536	broad.mit.edu	36	19	51548934	51548934	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006247	exon2	c.G211A	p.A71T	.	.	.
PTPRS	5802	broad.mit.edu	36	19	5172225	5172225	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002850	exon20	c.A3241G	p.T1081A	.	.	.
ALDH16A1	126133	broad.mit.edu	36	19	54659519	54659519	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153329	exon11	c.C1365T	p.H455H	.	.	.
TSKS	60385	broad.mit.edu	36	19	54957094	54957094	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021733	exon2	c.C378A	p.D126E	.	.	.
AP2A1	160	broad.mit.edu	36	19	54995069	54995069	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130787	exon11	c.C1305T	p.Y435Y	.	.	.
SHANK1	50944	broad.mit.edu	36	19	55881349	55881349	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016148	exon20	c.C2534A	p.A845E	.	.	.
KLK1	3816	broad.mit.edu	36	19	56014298	56014298	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002257	exon5	c.G753T	p.V251V	.	.	.
C19orf75	284369	broad.mit.edu	36	19	56460682	56460682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173635	exon3	c.G271A	p.G91R	.	.	.
CEACAM18	729767	broad.mit.edu	36	19	56675551	56675551	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080405	exon3	c.G388A	p.A130T	.	.	.
ZNF610	162963	broad.mit.edu	36	19	57548750	57548750	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173530	exon4	c.C67T	p.R23C	.	.	.
ZNF528	84436	broad.mit.edu	36	19	57610369	57610369	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032423	exon7	c.T452A	p.I151N	.	.	.
FUT3	2525	broad.mit.edu	36	19	5795264	5795264	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097640	exon3	c.C587T	p.A196V	.	.	.
NLRP12	91662	broad.mit.edu	36	19	59006072	59006072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144687	exon3	c.C653T	p.A218V	.	.	.
PRKCG	5582	broad.mit.edu	36	19	59101780	59101780	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002739	exon18	c.G1913A	p.R638H	.	.	.
NLRP2	55655	broad.mit.edu	36	19	60186334	60186334	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174083	exon7	c.G1387A	p.G463R	.	.	.
ZNF667	63934	broad.mit.edu	36	19	61645632	61645632	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022103	exon5	c.A544G	p.R182G	.	.	.
ZNF471	57573	broad.mit.edu	36	19	61728789	61728789	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020813	exon5	c.C1541A	p.P514H	.	.	.
ZNF835	90485	broad.mit.edu	36	19	61868088	61868088	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001005850	exon2	c.C357T	p.S119S	.	.	.
ZIM2	23619	broad.mit.edu	36	19	61977880	61977880	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146326	exon12	c.C1572T	p.C524C	.	.	.
ZNF543	125919	broad.mit.edu	36	19	62526902	62526902	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_213598	exon2	c.A59G	p.Q20R	.	.	.
ZNF749	388567	broad.mit.edu	36	19	62648424	62648424	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001023561	exon3	c.G2096C	p.S699T	.	.	.
ZNF417	147687	broad.mit.edu	36	19	63111754	63111754	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152475	exon3	c.T1704C	p.S568S	.	.	.
ZNF418	147686	broad.mit.edu	36	19	63129782	63129782	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133460	exon4	c.C1579T	p.R527X	.	.	.
INSR	3643	broad.mit.edu	36	19	7117276	7117276	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon8	c.A1750G	p.K584E	.	.	.
INSR	3643	broad.mit.edu	36	19	7135419	7135419	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon3	c.G882A	p.K294K	.	.	.
INSR	3643	broad.mit.edu	36	19	7218447	7218447	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000208	exon2	c.G561A	p.P187P	.	.	.
MCOLN1	57192	broad.mit.edu	36	19	7499557	7499557	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020533	exon8	c.C952T	p.R318C	.	.	.
MYO1F	4542	broad.mit.edu	36	19	8525538	8525538	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012335	exon3	c.G231A	p.A77A	.	.	.
MUC16	94025	broad.mit.edu	36	19	8920724	8920724	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.T27722A	p.V9241D	.	.	.
MUC16	94025	broad.mit.edu	36	19	8930072	8930072	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon3	c.C18374T	p.A6125V	.	.	.
MUC16	94025	broad.mit.edu	36	19	8952073	8952073	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024690	exon1	c.T742A	p.S248T	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9131952	9131952	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190791	exon6	c.C535G	p.Q179E	.	.	.
ZNF317	57693	broad.mit.edu	36	19	9132885	9132885	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190791	exon6	c.C1468T	p.R490X	.	.	.
DNMT1	1786	broad.mit.edu	36	19	10138348	10138349	+	Frame_Shift_Del	DEL	TC	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TC	TC	TC	-	TC	TC	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130823	exon11	c.816_817del	p.272_273del	.	.	.
RBM42	79171	broad.mit.edu	36	19	40815684	40815684	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024321	exon5	c.449delC	p.A150fs	.	.	.
ADCK4	79934	broad.mit.edu	36	19	45912358	45912358	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024876	exon2	c.20delG	p.G7fs	.	.	.
CIC	23152	broad.mit.edu	36	19	47486309	47486309	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015125	exon10	c.1549delC	p.P517fs	.	.	.
SIX5	147912	broad.mit.edu	36	19	50960748	50960748	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175875	exon3	c.2071delC	p.H691fs	.	.	.
PNPLA6	10908	broad.mit.edu	36	19	7529830	7529830	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166111	exon30	c.3522delG	p.L1174fs	.	.	.
DENND4B	9909	broad.mit.edu	36	1	152181097	152181098	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014856	exon6	c.927_928insG	p.G309fs	.	.	.
LRRIQ3	127255	broad.mit.edu	36	1	74394086	74394087	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001105659	exon4	c.626_627insA	p.I209fs	.	.	.
ARHGEF11	9826	broad.mit.edu	36	1	155183433	155183434	+	Splice_Site	INS	-	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
KIAA1324	57535	broad.mit.edu	36	1	109544082	109544082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020775	exon19	c.C2585T	p.A862V	.	.	.
ATXN7L2	127002	broad.mit.edu	36	1	109834470	109834470	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153340	exon9	c.C1291T	p.R431W	.	.	.
KCNA3	3738	broad.mit.edu	36	1	111018056	111018056	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002232	exon1	c.C899T	p.T300M	.	.	.
MOV10	4343	broad.mit.edu	36	1	113038944	113038944	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020963	exon10	c.G1523T	p.R508M	.	.	.
SLC16A1	6566	broad.mit.edu	36	1	113261986	113261986	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166496	exon4	c.T565G	p.C189G	.	.	.
LRIG2	9860	broad.mit.edu	36	1	113468234	113468234	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014813	exon18	c.T3186C	p.S1062S	.	.	.
HIPK1	204851	broad.mit.edu	36	1	114298849	114298849	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198269	exon3	c.C132A	p.A44A	.	.	.
SYCP1	6847	broad.mit.edu	36	1	115230405	115230405	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003176	exon14	c.A1142G	p.E381G	.	.	.
WDR3	10885	broad.mit.edu	36	1	118284984	118284984	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006784	exon7	c.G687A	p.P229P	.	.	.
SPAG17	200162	broad.mit.edu	36	1	118425363	118425363	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206996	exon15	c.A2093C	p.D698A	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12287159	12287159	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon26	c.C6226T	p.P2076S	.	.	.
VPS13D	55187	broad.mit.edu	36	1	12352185	12352185	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018156	exon53	c.A10574G	p.D3525G	.	.	.
AADACL4	343066	broad.mit.edu	36	1	12648880	12648880	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013630	exon4	c.G771A	p.L257L	.	.	.
HNRNPCL1	343069	broad.mit.edu	36	1	12830625	12830625	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013631	exon2	c.G105A	p.A35A	.	.	.
ITGA10	8515	broad.mit.edu	36	1	144244130	144244130	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003637	exon10	c.C1092T	p.N364N	.	.	.
GPR89A	653519	broad.mit.edu	36	1	144482998	144482998	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001097613	exon12	c.A924G	p.Q308Q	.	.	.
SETDB1	9869	broad.mit.edu	36	1	149188272	149188272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145415	exon11	c.G1318A	p.G440S	.	.	.
GABPB2	126626	broad.mit.edu	36	1	149357121	149357121	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144618	exon9	c.A1112G	p.Y371C	.	.	.
CGN	57530	broad.mit.edu	36	1	149759723	149759723	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020770	exon5	c.G1072A	p.V358M	.	.	.
TCHHL1	126637	broad.mit.edu	36	1	150325128	150325128	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008536	exon3	c.A1654C	p.S552R	.	.	.
TCHH	7062	broad.mit.edu	36	1	150348312	150348312	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007113	exon2	c.C4005T	p.D1335D	.	.	.
CRNN	49860	broad.mit.edu	36	1	150649890	150649890	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016190	exon3	c.G292A	p.G98S	.	.	.
SPRR2A	6700	broad.mit.edu	36	1	151295782	151295782	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005988	exon2	c.C54T	p.C18C	.	.	.
S100A2	6273	broad.mit.edu	36	1	151802899	151802899	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005978	exon2	c.A76C	p.K26Q	.	.	.
PBXIP1	57326	broad.mit.edu	36	1	153190958	153190958	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020524	exon3	c.C115T	p.Q39X	.	.	.
ASH1L	55870	broad.mit.edu	36	1	153579764	153579764	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018489	exon24	c.C8258T	p.T2753I	.	.	.
SLC25A44	9673	broad.mit.edu	36	1	154436356	154436356	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014655	exon2	c.C94A	p.R32S	.	.	.
RHBG	57127	broad.mit.edu	36	1	154620954	154620954	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020407	exon9	c.A1247G	p.K416R	.	.	.
C1orf92	149499	broad.mit.edu	36	1	155165708	155165708	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144702	exon10	c.C1009T	p.R337X	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155926935	155926935	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052939	exon9	c.G1424A	p.R475H	.	.	.
FCRL3	115352	broad.mit.edu	36	1	155931982	155931982	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052939	exon8	c.G1172T	p.R391M	.	.	.
OR10X1	128367	broad.mit.edu	36	1	156816077	156816077	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004477	exon1	c.T237C	p.L79L	.	.	.
ITLN2	142683	broad.mit.edu	36	1	159190862	159190862	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080878	exon2	c.G18T	p.R6S	.	.	.
PVRL4	81607	broad.mit.edu	36	1	159316201	159316201	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030916	exon2	c.T242G	p.L81R	.	.	.
USP21	27005	broad.mit.edu	36	1	159400591	159400591	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012475	exon9	c.G1232T	p.G411V	.	.	.
C1orf89	79363	broad.mit.edu	36	1	16431359	16431359	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030907	exon5	c.C548T	p.T183M	.	.	.
BRP44	25874	broad.mit.edu	36	1	166156436	166156436	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143674	exon4	c.G208A	p.A70T	.	.	.
SLC19A2	10560	broad.mit.edu	36	1	167705955	167705955	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006996	exon3	c.T901C	p.W301R	.	.	.
ATP13A2	23400	broad.mit.edu	36	1	17190896	17190896	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022089	exon20	c.T2171C	p.M724T	.	.	.
DARS2	55157	broad.mit.edu	36	1	172089640	172089640	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018122	exon15	c.C1648T	p.R550C	.	.	.
RABGAP1L	9910	broad.mit.edu	36	1	172511643	172511643	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014857	exon9	c.T1103C	p.M368T	.	.	.
GPR52	9293	broad.mit.edu	36	1	172683943	172683943	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005684	exon1	c.G71A	p.R24H	.	.	.
GPR52	9293	broad.mit.edu	36	1	172684890	172684890	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005684	exon1	c.A1018G	p.M340V	.	.	.
FAM20B	9917	broad.mit.edu	36	1	177279732	177279732	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014864	exon2	c.C127T	p.R43X	.	.	.
TOR3A	64222	broad.mit.edu	36	1	177321569	177321569	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022371	exon3	c.G557A	p.R186Q	.	.	.
ABL2	27	broad.mit.edu	36	1	177344169	177344169	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168239	exon12	c.C2439T	p.D813D	.	.	.
CACNA1E	777	broad.mit.edu	36	1	180026211	180026211	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000721	exon44	c.C5794T	p.R1932W	.	.	.
NMNAT2	23057	broad.mit.edu	36	1	181519768	181519768	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015039	exon7	c.C559T	p.R187W	.	.	.
PRG4	10216	broad.mit.edu	36	1	184532682	184532682	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127709	exon2	c.G52A	p.V18M	.	.	.
TPR	7175	broad.mit.edu	36	1	184598720	184598720	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003292	exon6	c.C568A	p.L190I	.	.	.
KLHDC7A	127707	broad.mit.edu	36	1	18680896	18680896	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152375	exon1	c.G834A	p.A278A	.	.	.
FAM5C	339479	broad.mit.edu	36	1	188500791	188500791	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199051	exon4	c.A445T	p.I149F	.	.	.
UBR4	23352	broad.mit.edu	36	1	19280609	19280609	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020765	exon103	c.G15054A	p.L5018L	.	.	.
CRB1	23418	broad.mit.edu	36	1	195657276	195657276	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_201253	exon6	c.A1695T	p.G565G	.	.	.
NR5A2	2494	broad.mit.edu	36	1	198356634	198356634	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_205860	exon7	c.G1306T	p.A436S	.	.	.
KIF14	9928	broad.mit.edu	36	1	198790342	198790342	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014875	exon29	c.C4444T	p.Q1482X	.	.	.
SYT2	127833	broad.mit.edu	36	1	200832694	200832694	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177402	exon9	c.C1074T	p.T358T	.	.	.
ATP2B4	493	broad.mit.edu	36	1	201963187	201963187	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001396	exon20	c.G3174T	p.K1058N	.	.	.
PLEKHA6	22874	broad.mit.edu	36	1	202484975	202484975	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014935	exon11	c.G1634T	p.R545M	.	.	.
TMCC2	9911	broad.mit.edu	36	1	203507774	203507774	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014858	exon5	c.C2029T	p.R677C	.	.	.
MFSD4	148808	broad.mit.edu	36	1	203820706	203820706	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181644	exon5	c.G939A	p.T313T	.	.	.
SLC45A3	85414	broad.mit.edu	36	1	203897794	203897794	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033102	exon4	c.C1042T	p.R348X	.	.	.
SLC26A9	115019	broad.mit.edu	36	1	204168780	204168780	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134325	exon3	c.T181C	p.W61R	.	.	.
PIGR	5284	broad.mit.edu	36	1	205173102	205173102	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002644	exon7	c.G1738A	p.A580T	.	.	.
CR1	1378	broad.mit.edu	36	1	205763920	205763920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000651	exon5	c.C829T	p.R277C	.	.	.
CD34	947	broad.mit.edu	36	1	206139913	206139913	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001773	exon2	c.G138T	p.Q46H	.	.	.
EIF4G3	8672	broad.mit.edu	36	1	21052684	21052684	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003760	exon22	c.G3339A	p.T1113T	.	.	.
PTPN14	5784	broad.mit.edu	36	1	212623804	212623804	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005401	exon13	c.G2017T	p.E673X	.	.	.
USH2A	7399	broad.mit.edu	36	1	214439940	214439940	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_206933	exon17	c.A3463C	p.S1155R	.	.	.
EPRS	2058	broad.mit.edu	36	1	218260077	218260077	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004446	exon10	c.A1225G	p.I409V	.	.	.
IARS2	55699	broad.mit.edu	36	1	218342733	218342733	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018060	exon7	c.C941T	p.P314L	.	.	.
USP48	84196	broad.mit.edu	36	1	21927728	21927728	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032730	exon11	c.C1372T	p.R458C	.	.	.
MIA3	375056	broad.mit.edu	36	1	220905286	220905286	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198551	exon28	c.G5426A	p.R1809H	.	.	.
URB2	9816	broad.mit.edu	36	1	227839070	227839070	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014777	exon4	c.C2087T	p.A696V	.	.	.
C1orf57	84284	broad.mit.edu	36	1	231158801	231158801	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032324	exon3	c.G283A	p.V95I	.	.	.
NID1	4811	broad.mit.edu	36	1	234255833	234255833	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002508	exon8	c.T1970C	p.I657T	.	.	.
RYR2	6262	broad.mit.edu	36	1	235684345	235684345	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035	exon15	c.G1324A	p.A442T	.	.	.
RGS7	6000	broad.mit.edu	36	1	239166621	239166621	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002924	exon5	c.C235T	p.L79F	.	.	.
SMYD3	64754	broad.mit.edu	36	1	243979512	243979512	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022743	exon12	c.C1086T	p.C362C	.	.	.
AHCTF1	25909	broad.mit.edu	36	1	245146252	245146252	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015446	exon3	c.C217T	p.R73X	.	.	.
ZNF695	57116	broad.mit.edu	36	1	245218060	245218060	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020394	exon4	c.A380G	p.D127G	.	.	.
OR2C3	81472	broad.mit.edu	36	1	245761778	245761778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198074	exon2	c.G659A	p.G220D	.	.	.
OR2M2	391194	broad.mit.edu	36	1	246410581	246410581	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004688	exon1	c.C671A	p.A224D	.	.	.
CNKSR1	10256	broad.mit.edu	36	1	26379952	26379952	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006314	exon3	c.G370A	p.A124T	.	.	.
AHDC1	27245	broad.mit.edu	36	1	27747958	27747958	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029882	exon6	c.T3256G	p.S1086A	.	.	.
DNAJC8	22826	broad.mit.edu	36	1	28407502	28407502	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014280	exon6	c.C409T	p.R137X	.	.	.
CSMD2	114784	broad.mit.edu	36	1	33896250	33896250	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052896	exon27	c.G4210A	p.G1404S	.	.	.
TPRG1L	127262	broad.mit.edu	36	1	3534008	3534008	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182752	exon4	c.C555T	p.N185N	.	.	.
EIF2C1	26523	broad.mit.edu	36	1	36130797	36130797	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012199	exon3	c.C262T	p.R88C	.	.	.
MAP7D1	55700	broad.mit.edu	36	1	36409487	36409487	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018067	exon2	c.C375T	p.S125S	.	.	.
EPHA10	284656	broad.mit.edu	36	1	37969763	37969763	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001099439	exon7	c.C1570T	p.R524C	.	.	.
MACF1	23499	broad.mit.edu	36	1	39573932	39573932	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033044	exon1	c.G4405A	p.A1469T	.	.	.
RIMS3	9783	broad.mit.edu	36	1	40874292	40874292	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014747	exon4	c.G242A	p.S81N	.	.	.
MED8	112950	broad.mit.edu	36	1	43625190	43625190	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052877	exon4	c.C337T	p.P113S	.	.	.
MAST2	23139	broad.mit.edu	36	1	46273300	46273300	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015112	exon29	c.C4372T	p.L1458L	.	.	.
POMGNT1	55624	broad.mit.edu	36	1	46431186	46431186	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017739	exon14	c.A1184G	p.D395G	.	.	.
ORC1	4998	broad.mit.edu	36	1	52626754	52626754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190818	exon8	c.G1331A	p.R444Q	.	.	.
C8B	732	broad.mit.edu	36	1	57184156	57184156	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000066	exon7	c.A1031G	p.Y344C	.	.	.
CACHD1	57685	broad.mit.edu	36	1	64917901	64917901	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020925	exon24	c.G3127A	p.A1043T	.	.	.
RAVER2	55225	broad.mit.edu	36	1	65015907	65015907	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018211	exon3	c.A330G	p.L110L	.	.	.
TAS1R1	80835	broad.mit.edu	36	1	6559609	6559609	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177540	exon4	c.G724A	p.V242M	.	.	.
DNAJC11	55735	broad.mit.edu	36	1	6628513	6628513	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018198	exon8	c.C817T	p.R273X	.	.	.
C1orf173	127254	broad.mit.edu	36	1	74859019	74859019	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001002912	exon8	c.A987C	p.K329N	.	.	.
SLC44A5	204962	broad.mit.edu	36	1	75454063	75454063	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152697	exon19	c.T1692C	p.N564N	.	.	.
USP33	23032	broad.mit.edu	36	1	77960401	77960401	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015017	exon14	c.G1551T	p.K517N	.	.	.
DNAJB4	11080	broad.mit.edu	36	1	78251398	78251398	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007034	exon2	c.C287T	p.A96V	.	.	.
TGFBR3	7049	broad.mit.edu	36	1	91957575	91957575	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195683	exon10	c.T1445G	p.L482W	.	.	.
ABCA4	24	broad.mit.edu	36	1	94239146	94239146	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon46	c.G6386T	p.S2129I	.	.	.
ABCA4	24	broad.mit.edu	36	1	94269925	94269925	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon27	c.G4125A	p.A1375A	.	.	.
ABCA4	24	broad.mit.edu	36	1	94289784	94289784	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000350	exon17	c.C2646T	p.G882G	.	.	.
DPYD	1806	broad.mit.edu	36	1	97473044	97473044	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000110	exon19	c.T2394C	p.S798S	.	.	.
LPPR4	9890	broad.mit.edu	36	1	99534967	99534968	+	Missense_Mutation	DNP	GC	TG	TG	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	GC	GC					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_014839	exon3	c.494_495TG	.	.	.	.
EPS8L3	79574	broad.mit.edu	36	1	110102103	110102103	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139053	exon9	c.821delA	p.N274fs	.	.	.
VTCN1	79679	broad.mit.edu	36	1	117491854	117491857	+	Frame_Shift_Del	DEL	AAAG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AAAG	AAAG	AAAG	-	AAAG	AAAG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024626	exon5	c.795_798del	p.265_266del	.	.	.
MFN2	9927	broad.mit.edu	36	1	11989252	11989254	+	In_Frame_Del	DEL	AGG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AGG	AGG					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001127660	exon15	c.1787_1789del	p.596_597del	.	.	.
PRDM2	7799	broad.mit.edu	36	1	13981336	13981336	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001007257	exon3	c.3856delA	p.K1286fs	.	.	.
CA14	23632	broad.mit.edu	36	1	148501602	148501603	+	Frame_Shift_Del	DEL	GA	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	GA	GA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_012113	exon5	c.454_455del	p.152_152del	.	.	.
ATP8B2	57198	broad.mit.edu	36	1	152566925	152566925	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020452	exon1	c.26delT	p.L9fs	.	.	.
FCRL5	83416	broad.mit.edu	36	1	155752030	155752030	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195388	exon17	c.2983delG	p.E995fs	.	.	.
EPHA2	1969	broad.mit.edu	36	1	16347564	16347564	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004431	exon3	c.719delG	p.G240fs	.	.	.
NFASC	23114	broad.mit.edu	36	1	203190656	203190656	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001160331	exon4	c.471delC	p.N157fs	.	.	.
TRIM11	81559	broad.mit.edu	36	1	226649499	226649499	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_145214	exon6	c.937delG	p.D313fs	.	.	.
KIAA1804	84451	broad.mit.edu	36	1	231581411	231581412	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032435	exon9	c.2036_2037del	p.679_679del	.	.	.
ZNF593	51042	broad.mit.edu	36	1	26369726	26369726	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015871	exon3	c.337delC	p.P113fs	.	.	.
TIE1	7075	broad.mit.edu	36	1	43545497	43545497	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005424	exon5	c.738delC	p.C246fs	.	.	.
FPGT	8790	broad.mit.edu	36	1	74443360	74443362	+	In_Frame_Del	DEL	TGT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TGT	TGT	TGT	-	TGT	TGT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003838	exon4	c.1041_1043del	p.347_348del	.	.	.
GBP2	2634	broad.mit.edu	36	1	89350849	89350851	+	In_Frame_Del	DEL	TCT	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	TCT	TCT	TCT	-	TCT	TCT	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004120	exon8	c.1254_1256del	p.418_419del	.	.	.
SPATA1	64173	broad.mit.edu	36	1	84771238	84771238	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SPATA1	64173	broad.mit.edu	36	1	84791360	84791360	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SEL1L2	80343	broad.mit.edu	36	20	13794103	13794103	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025229	exon16	c.T1462G	p.F488V	.	.	.
KIF16B	55614	broad.mit.edu	36	20	16308665	16308665	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024704	exon19	c.G1982A	p.R661H	.	.	.
SEC23B	10483	broad.mit.edu	36	20	18479786	18479786	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032986	exon17	c.T1959C	p.D653D	.	.	.
RIN2	54453	broad.mit.edu	36	20	19920915	19920915	+	Silent	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018993	exon9	c.C2172G	p.L724L	.	.	.
TGM3	7053	broad.mit.edu	36	20	2260650	2260650	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003245	exon10	c.T1336G	p.S446A	.	.	.
GZF1	64412	broad.mit.edu	36	20	23293740	23293740	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022482	exon1	c.T720C	p.Y240Y	.	.	.
C20orf186	149954	broad.mit.edu	36	20	31135035	31135035	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182519	exon3	c.G371T	p.R124L	.	.	.
AHCY	191	broad.mit.edu	36	20	32342242	32342242	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000687	exon6	c.T722C	p.I241T	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32766818	32766818	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon15	c.C6161T	p.A2054V	.	.	.
NCOA6	23054	broad.mit.edu	36	20	32778865	32778865	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014071	exon14	c.C6007T	p.P2003S	.	.	.
CEP250	11190	broad.mit.edu	36	20	33518591	33518591	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007186	exon9	c.G648A	p.L216L	.	.	.
PPP1R16B	26051	broad.mit.edu	36	20	36980408	36980408	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172735	exon10	c.C1263T	p.A421A	.	.	.
CDC25B	994	broad.mit.edu	36	20	3730677	3730677	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004358	exon10	c.A986G	p.D329G	.	.	.
CHD6	84181	broad.mit.edu	36	20	39545544	39545544	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032221	exon16	c.C2287T	p.R763X	.	.	.
PTPRT	11122	broad.mit.edu	36	20	40534339	40534339	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133170	exon8	c.G1431T	p.V477V	.	.	.
ZFP64	55734	broad.mit.edu	36	20	50202719	50202719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018197	exon6	c.G1419A	p.T473T	.	.	.
DOK5	55816	broad.mit.edu	36	20	52700403	52700403	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018431	exon8	c.C899G	p.P300R	.	.	.
MC3R	4159	broad.mit.edu	36	20	54257750	54257750	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019888	exon1	c.C444T	p.Y148Y	.	.	.
C20orf106	200232	broad.mit.edu	36	20	54534486	54534486	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012971	exon2	c.T469A	p.Y157N	.	.	.
SPO11	23626	broad.mit.edu	36	20	55343239	55343239	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012444	exon6	c.T537C	p.A179A	.	.	.
EDN3	1908	broad.mit.edu	36	20	57310072	57310072	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207033	exon2	c.C265A	p.P89T	.	.	.
YTHDF1	54915	broad.mit.edu	36	20	61304234	61304234	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017798	exon4	c.G1503A	p.P501P	.	.	.
ZBTB46	140685	broad.mit.edu	36	20	61892245	61892245	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025224	exon2	c.G310A	p.E104K	.	.	.
OPRL1	4987	broad.mit.edu	36	20	62199728	62199728	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182647	exon4	c.G363A	p.A121A	.	.	.
PLCB1	23236	broad.mit.edu	36	20	8665754	8665754	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182734	exon20	c.C2123T	p.T708I	.	.	.
CD93	22918	broad.mit.edu	36	20	23014469	23014469	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012072	exon1	c.361delG	p.E121fs	.	.	.
ITCH	83737	broad.mit.edu	36	20	32522951	32522951	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_031483	exon16	c.1539delA	p.R513fs	.	.	.
DDX27	55661	broad.mit.edu	36	20	47291911	47291911	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_017895	exon17	c.2065delA	p.K689fs	.	.	.
CCT8	10694	broad.mit.edu	36	21	29356353	29356353	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006585	exon11	c.C1179T	p.D393D	.	.	.
GRIK1	2897	broad.mit.edu	36	21	29883084	29883084	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175611	exon10	c.G1470A	p.G490G	.	.	.
CLDN8	9073	broad.mit.edu	36	21	30510114	30510114	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199328	exon1	c.A1T	p.M1L	.	.	.
SON	6651	broad.mit.edu	36	21	33846675	33846675	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032195	exon3	c.C3268T	p.R1090W	.	.	.
HLCS	3141	broad.mit.edu	36	21	37224567	37224567	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000411	exon6	c.C1033T	p.Q345X	.	.	.
DSCAM	1826	broad.mit.edu	36	21	40641666	40641666	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001389	exon6	c.G1011A	p.V337V	.	.	.
MX1	4599	broad.mit.edu	36	21	41745004	41745004	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001144925	exon17	c.T1473A	p.N491K	.	.	.
AGPAT3	56894	broad.mit.edu	36	21	44225396	44225396	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020132	exon9	c.G942T	p.W314C	.	.	.
PWP2	5822	broad.mit.edu	36	21	44358543	44358543	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005049	exon4	c.C282T	p.H94H	.	.	.
ITGB2	3689	broad.mit.edu	36	21	45146001	45146001	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127491	exon6	c.C575A	p.P192H	.	.	.
POFUT2	23275	broad.mit.edu	36	21	45512001	45512001	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133635	exon8	c.G1068T	p.W356C	.	.	.
MCM3AP	8888	broad.mit.edu	36	21	46528967	46528967	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003906	exon1	c.C662T	p.A221V	.	.	.
CCT8L2	150160	broad.mit.edu	36	22	15452521	15452521	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014406	exon1	c.C920T	p.A307V	.	.	.
SLC25A18	83733	broad.mit.edu	36	22	16450835	16450835	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031481	exon9	c.G720A	p.T240T	.	.	.
TSSK2	23617	broad.mit.edu	36	22	17499834	17499834	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_053006	exon1	c.G922A	p.D308N	.	.	.
PPM1F	9647	broad.mit.edu	36	22	20607564	20607564	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014634	exon8	c.C1266T	p.G422G	.	.	.
RGL4	266747	broad.mit.edu	36	22	22364527	22364527	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153615	exon2	c.T185C	p.I62T	.	.	.
MMP11	4320	broad.mit.edu	36	22	22455719	22455719	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005940	exon8	c.C1455T	p.N485N	.	.	.
CABIN1	23523	broad.mit.edu	36	22	22790525	22790525	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199281	exon15	c.T1912C	p.Y638H	.	.	.
SPECC1L	23384	broad.mit.edu	36	22	23047582	23047582	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145468	exon4	c.C634A	p.Q212K	.	.	.
MYO18B	84700	broad.mit.edu	36	22	24753349	24753349	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032608	exon43	c.G7409A	p.R2470H	.	.	.
SEZ6L	23544	broad.mit.edu	36	22	25037793	25037793	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001184776	exon8	c.G1741T	p.D581Y	.	.	.
TBC1D10A	83874	broad.mit.edu	36	22	29025511	29025511	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031937	exon3	c.G339A	p.P113P	.	.	.
PATZ1	23598	broad.mit.edu	36	22	30052935	30052935	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032050	exon4	c.C1868T	p.A623V	.	.	.
EIF4ENIF1	56478	broad.mit.edu	36	22	30175416	30175416	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019843	exon12	c.A1686G	p.A562A	.	.	.
SLC5A1	6523	broad.mit.edu	36	22	30836136	30836136	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000343	exon15	c.T1931C	p.V644A	.	.	.
SYN3	8224	broad.mit.edu	36	22	31239762	31239762	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001135774	exon14	c.C1657T	p.R553C	.	.	.
HMOX1	3162	broad.mit.edu	36	22	34112985	34112985	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002133	exon3	c.C452T	p.A151V	.	.	.
CACNG2	10369	broad.mit.edu	36	22	35290677	35290677	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006078	exon4	c.C639T	p.R213R	.	.	.
SREBF2	6721	broad.mit.edu	36	22	40599901	40599901	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004599	exon5	c.C1021T	p.R341X	.	.	.
PNPLA3	80339	broad.mit.edu	36	22	42664449	42664449	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025225	exon6	c.A943C	p.S315R	.	.	.
FBLN1	2192	broad.mit.edu	36	22	44316712	44316712	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006487	exon10	c.C1080T	p.C360C	.	.	.
PPP6R2	9701	broad.mit.edu	36	22	49201443	49201443	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014678	exon6	c.G609T	p.Q203H	.	.	.
C22orf28	51493	broad.mit.edu	36	22	31124006	31124006	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014306	exon7	c.736delA	p.M246fs	.	.	.
TOB2	10766	broad.mit.edu	36	22	40162712	40162712	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016272	exon2	c.584delG	p.G195fs	.	.	.
EMILIN1	11117	broad.mit.edu	36	2	27159754	27159755	+	Frame_Shift_Ins	INS	-	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	C	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007046	exon4	c.1811_1812insC	p.C604fs	.	.	.
LRRTM4	80059	broad.mit.edu	36	2	77599945	77599946	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024993	exon3	c.558_559insT	p.L186fs	.	.	.
GPR113	165082	broad.mit.edu	36	2	26393866	26393867	+	Splice_Site	INS	-	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
SLC9A4	389015	broad.mit.edu	36	2	102497005	102497005	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001011552	exon8	c.C1584T	p.Y528Y	.	.	.
ACOXL	55289	broad.mit.edu	36	2	111279347	111279347	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142807	exon9	c.G657A	p.S219S	.	.	.
FOXD4L1	200350	broad.mit.edu	36	2	113973636	113973636	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012184	exon1	c.G333A	p.S111S	.	.	.
LPIN1	23175	broad.mit.edu	36	2	11872784	11872784	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145693	exon17	c.T2261C	p.L754P	.	.	.
SAP130	79595	broad.mit.edu	36	2	128423951	128423951	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145928	exon18	c.A2837G	p.Y946C	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259187	133259187	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.C1667T	p.T556M	.	.	.
NCKAP5	344148	broad.mit.edu	36	2	133259644	133259644	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_207363	exon14	c.G1210T	p.G404W	.	.	.
LRP1B	53353	broad.mit.edu	36	2	140771925	140771925	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018557	exon84	c.G12889T	p.G4297X	.	.	.
MBD5	55777	broad.mit.edu	36	2	148964090	148964090	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018328	exon12	c.G3720A	p.L1240L	.	.	.
NEB	4703	broad.mit.edu	36	2	152102658	152102658	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon140	c.C21076T	p.R7026X	.	.	.
NEB	4703	broad.mit.edu	36	2	152249637	152249637	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164507	exon28	c.C2736T	p.A912A	.	.	.
NR4A2	4929	broad.mit.edu	36	2	156894403	156894403	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006186	exon3	c.C542T	p.S181L	.	.	.
ACVR1C	130399	broad.mit.edu	36	2	158109232	158109232	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001111031	exon5	c.A764C	p.H255P	.	.	.
BAZ2B	29994	broad.mit.edu	36	2	160003850	160003850	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013450	exon7	c.A816T	p.E272D	.	.	.
ITGB6	3694	broad.mit.edu	36	2	160702408	160702408	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000888	exon10	c.C1443T	p.C481C	.	.	.
KCNH7	90134	broad.mit.edu	36	2	163401515	163401515	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173162	exon2	c.T85A	p.F29I	.	.	.
COBLL1	22837	broad.mit.edu	36	2	165292823	165292823	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014900	exon4	c.T563C	p.L188P	.	.	.
SCN7A	6332	broad.mit.edu	36	2	167009657	167009657	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002976	exon12	c.A1487G	p.E496G	.	.	.
XIRP2	129446	broad.mit.edu	36	2	167812134	167812134	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199144	exon7	c.A5320G	p.T1774A	.	.	.
PRKRA	8575	broad.mit.edu	36	2	179005102	179005102	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001139517	exon7	c.C877T	p.Q293X	.	.	.
TTN	7273	broad.mit.edu	36	2	179108315	179108315	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon186	c.A74077G	p.T24693A	.	.	.
TTN	7273	broad.mit.edu	36	2	179117337	179117337	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon173	c.G68669A	p.S22890N	.	.	.
TTN	7273	broad.mit.edu	36	2	179133779	179133779	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C58130T	p.P19377L	.	.	.
TTN	7273	broad.mit.edu	36	2	179138660	179138660	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon154	c.C53249T	p.T17750M	.	.	.
TTN	7273	broad.mit.edu	36	2	179157710	179157710	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon138	c.G37708A	p.V12570M	.	.	.
TTN	7273	broad.mit.edu	36	2	179177127	179177127	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003319	exon110	c.C27337T	p.R9113C	.	.	.
TTN	7273	broad.mit.edu	36	2	179307810	179307810	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133378	exon48	c.G11354A	p.R3785Q	.	.	.
TTN	7273	broad.mit.edu	36	2	179341871	179341871	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133379	exon38	c.C8937T	p.N2979N	.	.	.
DNAJC10	54431	broad.mit.edu	36	2	183328001	183328001	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018981	exon17	c.A1578G	p.T526T	.	.	.
ZNF804A	91752	broad.mit.edu	36	2	185511288	185511288	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194250	exon4	c.G2920A	p.E974K	.	.	.
ANKAR	150709	broad.mit.edu	36	2	190300872	190300872	+	De_novo_Start_OutOfFrame	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144708	exon13	c.G2681A	p.R894H	.	.	.
GTF3C3	9330	broad.mit.edu	36	2	197348098	197348098	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012086	exon13	c.T1818C	p.N606N	.	.	.
PLCL1	5334	broad.mit.edu	36	2	198657632	198657632	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006226	exon2	c.G1146A	p.L382L	.	.	.
AOX1	316	broad.mit.edu	36	2	201193652	201193652	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159	exon17	c.T1739C	p.I580T	.	.	.
FAM126B	285172	broad.mit.edu	36	2	201584396	201584396	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173822	exon6	c.T378C	p.T126T	.	.	.
LANCL1	10314	broad.mit.edu	36	2	211028133	211028133	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136574	exon4	c.C350T	p.A117V	.	.	.
ERBB4	2066	broad.mit.edu	36	2	212252054	212252054	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005235	exon13	c.G1590T	p.R530S	.	.	.
IKZF2	22807	broad.mit.edu	36	2	213586817	213586817	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016260	exon7	c.G799T	p.E267X	.	.	.
ABCA12	26154	broad.mit.edu	36	2	215547816	215547816	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173076	exon35	c.C5399T	p.T1800M	.	.	.
STK36	27148	broad.mit.edu	36	2	219245857	219245857	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015690	exon2	c.G61C	p.G21R	.	.	.
STK36	27148	broad.mit.edu	36	2	219252947	219252947	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015690	exon9	c.G1036A	p.A346T	.	.	.
ABCB6	10058	broad.mit.edu	36	2	219790752	219790752	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005689	exon2	c.C571T	p.L191L	.	.	.
STK16	8576	broad.mit.edu	36	2	219819648	219819648	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008910	exon3	c.G112C	p.E38Q	.	.	.
CHPF	79586	broad.mit.edu	36	2	220113523	220113523	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024536	exon4	c.C1154T	p.P385L	.	.	.
SLC4A3	6508	broad.mit.edu	36	2	220203258	220203258	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005070	exon6	c.G751T	p.V251L	.	.	.
KIAA1486	57624	broad.mit.edu	36	2	226155885	226155885	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020864	exon4	c.G1508A	p.R503Q	.	.	.
COL4A4	1286	broad.mit.edu	36	2	227624020	227624020	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000092	exon33	c.C3067T	p.P1023S	.	.	.
C2orf83	56918	broad.mit.edu	36	2	228184549	228184549	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020161	exon3	c.C258T	p.C86C	.	.	.
SPHKAP	80309	broad.mit.edu	36	2	228590794	228590794	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142644	exon7	c.C3020T	p.T1007M	.	.	.
DNER	92737	broad.mit.edu	36	2	229940057	229940057	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139072	exon12	c.C1878A	p.H626Q	.	.	.
TRIP12	9320	broad.mit.edu	36	2	230358748	230358748	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004238	exon33	c.G4838A	p.R1613Q	.	.	.
SP110	3431	broad.mit.edu	36	2	230745899	230745899	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080424	exon15	c.C1611T	p.C537C	.	.	.
NEU2	4759	broad.mit.edu	36	2	233607606	233607606	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005383	exon2	c.C738A	p.A246A	.	.	.
LRRFIP1	9208	broad.mit.edu	36	2	238292948	238292948	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001137552	exon3	c.C197T	p.S66L	.	.	.
POMC	5443	broad.mit.edu	36	2	25237503	25237503	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001035256	exon4	c.C755T	p.T252M	.	.	.
PREB	10113	broad.mit.edu	36	2	27208991	27208991	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013388	exon5	c.C736T	p.R246C	.	.	.
IFT172	26160	broad.mit.edu	36	2	27553618	27553618	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015662	exon13	c.G1295A	p.R432H	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32328759	32328759	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.C1678A	p.H560N	.	.	.
NLRC4	58484	broad.mit.edu	36	2	32329465	32329465	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021209	exon4	c.A972C	p.Q324H	.	.	.
VIT	5212	broad.mit.edu	36	2	36835660	36835660	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177972	exon5	c.C368T	p.S123L	.	.	.
STRN	6801	broad.mit.edu	36	2	36967417	36967417	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003162	exon8	c.A988G	p.T330A	.	.	.
CALM2	805	broad.mit.edu	36	2	47243285	47243285	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001743	exon3	c.C55T	p.L19L	.	.	.
SPRED2	200734	broad.mit.edu	36	2	65394331	65394331	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181784	exon6	c.G1065A	p.S355S	.	.	.
RSAD2	91543	broad.mit.edu	36	2	6941098	6941098	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080657	exon2	c.G492A	p.R164R	.	.	.
ATP6V1B1	525	broad.mit.edu	36	2	71045407	71045407	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001692	exon13	c.G1282A	p.A428T	.	.	.
EXOC6B	23233	broad.mit.edu	36	2	72822053	72822053	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015189	exon2	c.G167A	p.R56H	.	.	.
SEMA4F	10505	broad.mit.edu	36	2	74755857	74755857	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004263	exon10	c.G1210A	p.V404I	.	.	.
CTNNA2	1496	broad.mit.edu	36	2	79990387	79990387	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004389	exon7	c.G1012A	p.A338T	.	.	.
IMMT	10989	broad.mit.edu	36	2	86247254	86247254	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001100169	exon7	c.C677A	p.A226D	.	.	.
EIF2AK3	9451	broad.mit.edu	36	2	88660190	88660190	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004836	exon11	c.A1847T	p.D616V	.	.	.
CNNM4	26504	broad.mit.edu	36	2	96791814	96791814	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020184	exon1	c.T1351G	p.F451V	.	.	.
ZAP70	7535	broad.mit.edu	36	2	97707997	97707997	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001079	exon4	c.T413C	p.L138P	.	.	.
MITD1	129531	broad.mit.edu	36	2	99163825	99163825	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138798	exon1	c.G52A	p.V18M	.	.	.
SLC20A1	6574	broad.mit.edu	36	2	113133078	113133079	+	Frame_Shift_Del	DEL	AG	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AG	AG	AG	-	AG	AG	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005415	exon7	c.984_985del	p.328_329del	.	.	.
ACVR2A	92	broad.mit.edu	36	2	148400156	148400156	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001616	exon10	c.1303delA	p.K435fs	.	.	.
LY75	4065	broad.mit.edu	36	2	160381708	160381708	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198760	exon30	c.4235delA	p.K1412fs	.	.	.
DNAH7	56171	broad.mit.edu	36	2	196348946	196348946	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018897	exon60	c.11071delA	p.S3691fs	.	.	.
MAP2	4133	broad.mit.edu	36	2	210269912	210269912	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002374	exon9	c.4414delA	p.K1472fs	.	.	.
CHAC2	494143	broad.mit.edu	36	2	53854825	53854827	+	In_Frame_Del	DEL	GAA	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	GAA	GAA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001008708	exon3	c.214_216del	p.72_72del	.	.	.
MTIF2	4528	broad.mit.edu	36	2	55320754	55320754	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001005369	exon15	c.1767delA	p.K589fs	.	.	.
EMX1	2016	broad.mit.edu	36	2	73014500	73014502	+	In_Frame_Del	DEL	AGA	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	AGA	AGA					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_004097	exon3	c.782_784del	p.261_262del	.	.	.
KDM3A	55818	broad.mit.edu	36	2	86544836	86544836	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001146688	exon9	c.993delA	p.A331fs	.	.	.
CADPS	8618	broad.mit.edu	36	3	62439014	62439015	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	T	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183394	exon21	c.3174_3175insA	p.K1058fs	.	.	.
ZBTB11	27107	broad.mit.edu	36	3	102866125	102866125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014415	exon5	c.G1747A	p.A583T	.	.	.
TATDN2	9797	broad.mit.edu	36	3	10287274	10287274	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014760	exon4	c.C1408T	p.P470S	.	.	.
RPL24	6152	broad.mit.edu	36	3	102882745	102882745	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000986	exon6	c.C398A	p.P133H	.	.	.
BBX	56987	broad.mit.edu	36	3	109000151	109000151	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001142568	exon16	c.G2445A	p.T815T	.	.	.
DZIP3	9666	broad.mit.edu	36	3	109855743	109855743	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014648	exon19	c.A2095G	p.S699G	.	.	.
ATG7	10533	broad.mit.edu	36	3	11396484	11396484	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006395	exon17	c.C1914T	p.P638P	.	.	.
CD200R1L	344807	broad.mit.edu	36	3	114029165	114029165	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001008784	exon3	c.A169G	p.I57V	.	.	.
WDR52	55779	broad.mit.edu	36	3	114635188	114635188	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164496	exon2	c.A14T	p.D5V	.	.	.
ZBTB20	26137	broad.mit.edu	36	3	115540727	115540727	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001164343	exon12	c.G1822A	p.V608M	.	.	.
FSTL1	11167	broad.mit.edu	36	3	121606415	121606415	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007085	exon7	c.G556T	p.D186Y	.	.	.
POLQ	10721	broad.mit.edu	36	3	122661671	122661671	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199420	exon25	c.T7068C	p.A2356A	.	.	.
ILDR1	286676	broad.mit.edu	36	3	123194799	123194799	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175924	exon6	c.G1355A	p.R452H	.	.	.
KALRN	8997	broad.mit.edu	36	3	125897755	125897755	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024660	exon54	c.C7662T	p.H2554H	.	.	.
KALRN	8997	broad.mit.edu	36	3	125899183	125899183	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024660	exon55	c.G7753A	p.V2585M	.	.	.
OSBPL11	114885	broad.mit.edu	36	3	126749013	126749013	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022776	exon10	c.A1768G	p.N590D	.	.	.
PLXND1	23129	broad.mit.edu	36	3	130766940	130766940	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015103	exon25	c.G4454A	p.R1485H	.	.	.
CPNE4	131034	broad.mit.edu	36	3	132925014	132925014	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_130808	exon3	c.A326C	p.D109A	.	.	.
DNAJC13	23317	broad.mit.edu	36	3	133704804	133704804	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015268	exon41	c.G4773A	p.G1591G	.	.	.
ESYT3	83850	broad.mit.edu	36	3	139675853	139675853	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031913	exon20	c.C2437T	p.R813W	.	.	.
CLSTN2	64084	broad.mit.edu	36	3	141606170	141606170	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022131	exon4	c.C509T	p.T170M	.	.	.
C3orf20	84077	broad.mit.edu	36	3	14699295	14699295	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_032137	exon3	c.G71A	p.R24H	.	.	.
FAM194A	131831	broad.mit.edu	36	3	151904198	151904198	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152394	exon1	c.T178C	p.L60L	.	.	.
IGSF10	285313	broad.mit.edu	36	3	152649265	152649265	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178822	exon4	c.G1194A	p.P398P	.	.	.
GPR149	344758	broad.mit.edu	36	3	155629330	155629330	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001038705	exon1	c.C769T	p.P257S	.	.	.
IFT80	57560	broad.mit.edu	36	3	161556613	161556613	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190242	exon7	c.G248A	p.R83H	.	.	.
PLD1	5337	broad.mit.edu	36	3	172887975	172887975	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001130081	exon15	c.G1633A	p.D545N	.	.	.
SPATA16	83893	broad.mit.edu	36	3	174090079	174090079	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031955	exon11	c.G1685A	p.R562Q	.	.	.
EIF4G1	1981	broad.mit.edu	36	3	185531828	185531828	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182917	exon28	c.T4245C	p.G1415G	.	.	.
MASP1	5648	broad.mit.edu	36	3	188453715	188453715	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031849	exon6	c.T827C	p.L276P	.	.	.
TP63	8626	broad.mit.edu	36	3	191069180	191069180	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114980	exon6	c.C828T	p.N276N	.	.	.
ATP13A5	344905	broad.mit.edu	36	3	194564747	194564747	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198505	exon2	c.G80A	p.R27Q	.	.	.
UBXN7	26043	broad.mit.edu	36	3	197580704	197580704	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015562	exon7	c.T691C	p.L231L	.	.	.
CMC1	152100	broad.mit.edu	36	3	28279847	28279847	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182523	exon2	c.C81A	p.A27A	.	.	.
ZCWPW2	152098	broad.mit.edu	36	3	28537503	28537503	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040432	exon8	c.A801C	p.E267D	.	.	.
RBMS3	27303	broad.mit.edu	36	3	29451302	29451302	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001003793	exon2	c.A140G	p.N47S	.	.	.
GPD1L	23171	broad.mit.edu	36	3	32175475	32175475	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015141	exon6	c.C722T	p.A241V	.	.	.
CNOT10	25904	broad.mit.edu	36	3	32744201	32744201	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015442	exon10	c.A1050G	p.L350L	.	.	.
DLEC1	9940	broad.mit.edu	36	3	38055795	38055795	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007337	exon1	c.G75A	p.A25A	.	.	.
ACVR2B	93	broad.mit.edu	36	3	38493863	38493863	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001106	exon2	c.G134A	p.G45D	.	.	.
CCR8	1237	broad.mit.edu	36	3	39349652	39349652	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005201	exon2	c.C826A	p.Q276K	.	.	.
TRAK1	22906	broad.mit.edu	36	3	42219176	42219176	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001042646	exon13	c.G1672A	p.G558S	.	.	.
C3orf39	84892	broad.mit.edu	36	3	43096931	43096931	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032806	exon2	c.C997T	p.R333W	.	.	.
ZNF167	55888	broad.mit.edu	36	3	44587853	44587853	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018651	exon6	c.G2247A	p.L749L	.	.	.
KIF9	64147	broad.mit.edu	36	3	47287933	47287933	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182902	exon5	c.G389A	p.R130H	.	.	.
QRICH1	54870	broad.mit.edu	36	3	49069792	49069792	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198880	exon3	c.T845C	p.L282S	.	.	.
LAMB2	3913	broad.mit.edu	36	3	49136408	49136408	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002292	exon24	c.C3554T	p.P1185L	.	.	.
BSN	8927	broad.mit.edu	36	3	49667360	49667360	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003458	exon5	c.G5367A	p.G1789G	.	.	.
SLC38A3	10991	broad.mit.edu	36	3	50231126	50231126	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006841	exon13	c.G1134A	p.T378T	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51290182	51290182	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon26	c.C2739T	p.G913G	.	.	.
DOCK3	1795	broad.mit.edu	36	3	51367368	51367368	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004947	exon41	c.T4082C	p.V1361A	.	.	.
IQCF1	132141	broad.mit.edu	36	3	51904082	51904082	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152397	exon4	c.G482A	p.R161H	.	.	.
TLR9	54106	broad.mit.edu	36	3	52232956	52232956	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017442	exon2	c.C416A	p.P139H	.	.	.
ITIH4	3700	broad.mit.edu	36	3	52822542	52822542	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002218	exon24	c.C2728T	p.R910C	.	.	.
CADPS	8618	broad.mit.edu	36	3	62493713	62493713	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_183393	exon13	c.C2113T	p.R705W	.	.	.
ATXN7	6314	broad.mit.edu	36	3	63948927	63948927	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177387	exon8	c.C1248T	p.P416P	.	.	.
ROBO2	6092	broad.mit.edu	36	3	77728534	77728534	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128929	exon18	c.T2738C	p.L913P	.	.	.
ROBO1	6091	broad.mit.edu	36	3	78799825	78799825	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002941	exon14	c.A1864G	p.K622E	.	.	.
CADM2	253559	broad.mit.edu	36	3	86044308	86044308	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001167674	exon5	c.G598A	p.A200T	.	.	.
HTR1F	3355	broad.mit.edu	36	3	88123491	88123491	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000866	exon2	c.C902T	p.A301V	.	.	.
ZNF654	55279	broad.mit.edu	36	3	88272010	88272010	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018293	exon1	c.A860C	p.Q287P	.	.	.
EPHA3	2042	broad.mit.edu	36	3	89582168	89582168	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005233	exon15	c.G2648A	p.R883Q	.	.	.
BRPF1	7862	broad.mit.edu	36	3	9751310	9751310	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004634	exon2	c.T486C	p.H162H	.	.	.
CPOX	1371	broad.mit.edu	36	3	99782232	99782232	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000097	exon7	c.G1350A	p.R450R	.	.	.
FXR1	8087	broad.mit.edu	36	3	182148922	182148922	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013438	exon5	c.364delA	p.K122fs	.	.	.
MTTP	4547	broad.mit.edu	36	4	100723608	100723608	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000253	exon4	c.T304G	p.F102V	.	.	.
TACR3	6870	broad.mit.edu	36	4	104860111	104860111	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001059	exon1	c.G171A	p.A57A	.	.	.
ALPK1	80216	broad.mit.edu	36	4	113571552	113571552	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025144	exon11	c.G1400T	p.C467F	.	.	.
UGT8	7368	broad.mit.edu	36	4	115764221	115764221	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128174	exon2	c.G736A	p.V246I	.	.	.
SEC24D	9871	broad.mit.edu	36	4	119956318	119956318	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014822	exon5	c.G409A	p.A137T	.	.	.
SYNPO2	171024	broad.mit.edu	36	4	120198337	120198337	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133477	exon5	c.A3586C	p.R1196R	.	.	.
TNIP3	79931	broad.mit.edu	36	4	122297832	122297832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128843	exon6	c.C230T	p.T77M	.	.	.
KIAA1109	84162	broad.mit.edu	36	4	123476807	123476807	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015312	exon68	c.A11859T	p.K3953N	.	.	.
ADAD1	132612	broad.mit.edu	36	4	123551937	123551937	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_139243	exon9	c.T959A	p.I320N	.	.	.
SLC25A31	83447	broad.mit.edu	36	4	128871312	128871312	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031291	exon1	c.G162A	p.S54S	.	.	.
LARP1B	55132	broad.mit.edu	36	4	129247837	129247837	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178043	exon9	c.C907T	p.R303C	.	.	.
BOD1L	259282	broad.mit.edu	36	4	13215578	13215578	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148894	exon10	c.C2044T	p.R682C	.	.	.
PCDH10	57575	broad.mit.edu	36	4	134292386	134292386	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032961	exon1	c.C1641T	p.D547D	.	.	.
RNF150	57484	broad.mit.edu	36	4	142273224	142273224	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_020724	exon1	c.C189T	p.G63G	.	.	.
GYPB	2994	broad.mit.edu	36	4	145141863	145141863	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002100	exon2	c.A61C	p.S21R	.	.	.
PRMT10	90826	broad.mit.edu	36	4	148779595	148779595	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138364	exon11	c.C2288T	p.T763I	.	.	.
KIAA0922	23240	broad.mit.edu	36	4	154724173	154724173	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015196	exon11	c.G959A	p.R320H	.	.	.
DCHS2	54798	broad.mit.edu	36	4	155375834	155375834	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017639	exon25	c.C8055T	p.D2685D	.	.	.
GLRB	2743	broad.mit.edu	36	4	158311173	158311173	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166060	exon10	c.A1337G	p.N446S	.	.	.
PALLD	23022	broad.mit.edu	36	4	169840798	169840798	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016081	exon5	c.T1229C	p.V410A	.	.	.
WDR17	116966	broad.mit.edu	36	4	177331463	177331463	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181265	exon25	c.A3296G	p.D1099G	.	.	.
ASB5	140458	broad.mit.edu	36	4	177427184	177427184	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_080874	exon1	c.C70A	p.L24M	.	.	.
ODZ3	55714	broad.mit.edu	36	4	183482267	183482267	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001080477	exon1	c.C100T	p.R34W	.	.	.
C4orf41	60684	broad.mit.edu	36	4	184822061	184822061	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_199053	exon2	c.C47A	p.P16H	.	.	.
FAM149A	25854	broad.mit.edu	36	4	187311873	187311873	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001006655	exon4	c.A167C	p.H56P	.	.	.
WHSC1	7468	broad.mit.edu	36	4	1923647	1923647	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133331	exon12	c.G2028A	p.P676P	.	.	.
GBA3	57733	broad.mit.edu	36	4	22358715	22358715	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020973	exon3	c.G985A	p.D329N	.	.	.
LGI2	55203	broad.mit.edu	36	4	24614496	24614496	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018176	exon8	c.G1313A	p.R438H	.	.	.
STIM2	57620	broad.mit.edu	36	4	26633422	26633422	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001169118	exon13	c.T1971C	p.G657G	.	.	.
HTT	3064	broad.mit.edu	36	4	3185577	3185577	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002111	exon50	c.G6869T	p.G2290V	.	.	.
RFC1	5981	broad.mit.edu	36	4	38978085	38978085	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002913	exon21	c.T2759C	p.V920A	.	.	.
ZNF721	170960	broad.mit.edu	36	4	426840	426840	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133474	exon3	c.C1416A	p.P472P	.	.	.
CORIN	10699	broad.mit.edu	36	4	47297017	47297017	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006587	exon21	c.T2917C	p.Y973H	.	.	.
CWH43	80157	broad.mit.edu	36	4	48729433	48729433	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025087	exon12	c.C1602T	p.T534T	.	.	.
SPATA18	132671	broad.mit.edu	36	4	52645881	52645881	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_145263	exon11	c.T1522G	p.L508V	.	.	.
LNX1	84708	broad.mit.edu	36	4	54042778	54042778	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001126328	exon7	c.G1351A	p.A451T	.	.	.
KIAA0232	9778	broad.mit.edu	36	4	6916236	6916236	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014743	exon7	c.C3226A	p.L1076I	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73375572	73375572	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon20	c.G2795A	p.R932H	.	.	.
ADAMTS3	9508	broad.mit.edu	36	4	73380314	73380314	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014243	exon19	c.C2644A	p.H882N	.	.	.
AFAP1	60312	broad.mit.edu	36	4	7821602	7821602	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001134647	exon17	c.T2287G	p.S763A	.	.	.
PAQR3	152559	broad.mit.edu	36	4	80079381	80079381	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040202	exon1	c.A22C	p.S8R	.	.	.
HELQ	113510	broad.mit.edu	36	4	84586239	84586239	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133636	exon5	c.C1417T	p.R473C	.	.	.
HERC6	55008	broad.mit.edu	36	4	89582423	89582423	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017912	exon23	c.C2856T	p.D952D	.	.	.
SLC2A9	56606	broad.mit.edu	36	4	9501406	9501406	+	Nonsense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001290	exon10	c.A1054T	p.R352X	.	.	.
BMPR1B	658	broad.mit.edu	36	4	96244675	96244675	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001203	exon4	c.G77A	p.R26H	.	.	.
FAT4	79633	broad.mit.edu	36	4	126630852	126630852	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024582	exon17	c.13425delG	p.Q4475fs	.	.	.
RNF175	285533	broad.mit.edu	36	4	154853134	154853134	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173662	exon8	c.809delA	p.K270fs	.	.	.
TMPRSS11A	339967	broad.mit.edu	36	4	68492941	68492941	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182606	exon3	c.143delA	p.K48fs	.	.	.
ACOX3	8310	broad.mit.edu	36	4	8458608	8458608	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003501	exon7	c.750delA	p.K250fs	.	.	.
WDFY3	23001	broad.mit.edu	36	4	85935145	85935145	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014991	exon20	c.3179delT	p.L1060fs	.	.	.
MCC	4163	broad.mit.edu	36	5	112417448	112417448	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon15	c.A2321G	p.K774R	.	.	.
MCC	4163	broad.mit.edu	36	5	112417528	112417528	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001085377	exon15	c.C2241T	p.C747C	.	.	.
ZNF608	57507	broad.mit.edu	36	5	124011165	124011165	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020747	exon4	c.G2811A	p.P937P	.	.	.
GRAMD3	65983	broad.mit.edu	36	5	125856536	125856536	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023927	exon14	c.A1288G	p.N430D	.	.	.
ALDH7A1	501	broad.mit.edu	36	5	125915718	125915718	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001182	exon14	c.G1211A	p.R404H	.	.	.
MEGF10	84466	broad.mit.edu	36	5	126796999	126796999	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032446	exon15	c.A1739C	p.N580T	.	.	.
SLC12A2	6558	broad.mit.edu	36	5	127514897	127514897	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001046	exon14	c.A2173G	p.I725V	.	.	.
FBN2	2201	broad.mit.edu	36	5	127758803	127758803	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001999	exon9	c.G1142A	p.G381E	.	.	.
ACSL6	23305	broad.mit.edu	36	5	131330058	131330058	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001009185	exon17	c.C1663T	p.L555L	.	.	.
P4HA2	8974	broad.mit.edu	36	5	131580851	131580851	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017974	exon4	c.T269C	p.V90A	.	.	.
PITX1	5307	broad.mit.edu	36	5	134394989	134394989	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002653	exon2	c.G278A	p.R93H	.	.	.
KDM3B	51780	broad.mit.edu	36	5	137763519	137763519	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016604	exon11	c.A3118G	p.N1040D	.	.	.
ETF1	2107	broad.mit.edu	36	5	137874196	137874196	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004730	exon9	c.C1040T	p.T347I	.	.	.
HSPA9	3313	broad.mit.edu	36	5	137921053	137921053	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004134	exon14	c.A1665C	p.K555N	.	.	.
CTNNA1	1495	broad.mit.edu	36	5	138288247	138288247	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001903	exon12	c.G1696A	p.G566R	.	.	.
NRG2	9542	broad.mit.edu	36	5	139212713	139212713	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013981	exon7	c.G1358A	p.S453N	.	.	.
PCDHA2	56146	broad.mit.edu	36	5	140154998	140154998	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018905	exon1	c.C265T	p.R89W	.	.	.
PCDHA9	9752	broad.mit.edu	36	5	140210534	140210534	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014005	exon1	c.G2270A	p.R757K	.	.	.
PCDHA13	56136	broad.mit.edu	36	5	140242177	140242177	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031865	exon1	c.G140A	p.R47H	.	.	.
PCDHB1	29930	broad.mit.edu	36	5	140412112	140412112	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013340	exon1	c.G873A	p.T291T	.	.	.
PCDHB13	56123	broad.mit.edu	36	5	140575778	140575778	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_018933	exon1	c.C1899T	p.R633R	.	.	.
PCDHGB1	56104	broad.mit.edu	36	5	140711113	140711113	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018922	exon1	c.C1102T	p.R368X	.	.	.
PCDHGB2	56103	broad.mit.edu	36	5	140720011	140720011	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018923	exon1	c.C125T	p.A42V	.	.	.
PCDHGA11	56105	broad.mit.edu	36	5	140781955	140781955	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018914	exon1	c.G977T	p.G326V	.	.	.
PLAC8L1	153770	broad.mit.edu	36	5	145445310	145445310	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001029869	exon3	c.C300T	p.I100I	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147003898	147003898	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon7	c.C1140T	p.L380L	.	.	.
JAKMIP2	9832	broad.mit.edu	36	5	147004689	147004689	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014790	exon6	c.G1000A	p.A334T	.	.	.
SLC36A2	153201	broad.mit.edu	36	5	150681865	150681865	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181776	exon9	c.G1115A	p.R372Q	.	.	.
FAT2	2196	broad.mit.edu	36	5	150885592	150885592	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001447	exon17	c.C10436A	p.P3479Q	.	.	.
CYFIP2	26999	broad.mit.edu	36	5	156660446	156660446	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037333	exon6	c.A533G	p.K178R	.	.	.
ODZ2	57451	broad.mit.edu	36	5	167577853	167577853	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001122679	exon23	c.G4352A	p.G1451D	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169041363	169041363	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon7	c.G508A	p.G170R	.	.	.
DOCK2	1794	broad.mit.edu	36	5	169407170	169407170	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004946	exon40	c.G4045A	p.G1349S	.	.	.
ERGIC1	57222	broad.mit.edu	36	5	172283679	172283679	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031711	exon6	c.G441A	p.T147T	.	.	.
C5orf25	375484	broad.mit.edu	36	5	175704816	175704816	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198567	exon9	c.A1136C	p.D379A	.	.	.
ZNF346	23567	broad.mit.edu	36	5	176421675	176421675	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012279	exon6	c.C714A	p.G238G	.	.	.
C5orf45	51149	broad.mit.edu	36	5	179197130	179197130	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017987	exon5	c.G734A	p.C245Y	.	.	.
GFPT2	9945	broad.mit.edu	36	5	179696157	179696157	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005110	exon3	c.G142A	p.E48K	.	.	.
CDH6	1004	broad.mit.edu	36	5	31333177	31333177	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004932	exon4	c.C548T	p.A183V	.	.	.
PDZD2	23037	broad.mit.edu	36	5	32084449	32084449	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178140	exon7	c.G1567T	p.V523L	.	.	.
C5orf42	65250	broad.mit.edu	36	5	37220929	37220929	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_023073	exon25	c.C4199G	p.T1400S	.	.	.
WDR70	55100	broad.mit.edu	36	5	37736920	37736920	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018034	exon12	c.A1196G	p.D399G	.	.	.
C5orf51	285636	broad.mit.edu	36	5	41952882	41952882	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_175921	exon6	c.T609C	p.F203F	.	.	.
SKIV2L2	23517	broad.mit.edu	36	5	54698312	54698312	+	Silent	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015360	exon16	c.C1662A	p.G554G	.	.	.
CWC27	10283	broad.mit.edu	36	5	64115435	64115435	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005869	exon4	c.G269A	p.R90Q	.	.	.
NLN	57486	broad.mit.edu	36	5	65154446	65154446	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020726	exon13	c.C2062T	p.R688C	.	.	.
SLC30A5	64924	broad.mit.edu	36	5	68453330	68453330	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022902	exon13	c.C1623T	p.S541S	.	.	.
CCNB1	891	broad.mit.edu	36	5	68505871	68505871	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031966	exon5	c.G584A	p.R195Q	.	.	.
MAP1B	4131	broad.mit.edu	36	5	71530312	71530312	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005909	exon5	c.T5374C	p.S1792P	.	.	.
ZNF366	167465	broad.mit.edu	36	5	71788115	71788115	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152625	exon3	c.C1396T	p.R466X	.	.	.
TNPO1	3842	broad.mit.edu	36	5	72214710	72214710	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153188	exon11	c.C1021T	p.R341X	.	.	.
AP3B1	8546	broad.mit.edu	36	5	77370670	77370670	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003664	exon23	c.A2762G	p.E921G	.	.	.
CMYA5	202333	broad.mit.edu	36	5	79064570	79064570	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153610	exon2	c.A4226G	p.E1409G	.	.	.
GPR98	84059	broad.mit.edu	36	5	90142248	90142248	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032119	exon74	c.G15415A	p.E5139K	.	.	.
PCSK1	5122	broad.mit.edu	36	5	95773923	95773923	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001177875	exon7	c.C596T	p.T199M	.	.	.
LNPEP	4012	broad.mit.edu	36	5	96341195	96341195	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005575	exon2	c.A617C	p.N206T	.	.	.
PLK2	10769	broad.mit.edu	36	5	57788769	57788769	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006622	exon7	c.1004delT	p.L335fs	.	.	.
CDKAL1	54901	broad.mit.edu	36	6	21173410	21173411	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017774	exon12	c.1208_1209insA	p.A403fs	.	.	.
ZNF184	7738	broad.mit.edu	36	6	27528151	27528152	+	Frame_Shift_Ins	INS	-	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007149	exon6	c.1166_1167insA	p.T389fs	.	.	.
HLA-B	3106	broad.mit.edu	36	6	31432580	31432581	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			Illumina HiSeq	NM_005514	exon2	c.207_208insT	p.E69fs	.	.	.
PKHD1	5314	broad.mit.edu	36	6	52017773	52017774	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138694	exon25	c.2665_2666insT	p.L889fs	.	.	.
HACE1	57531	broad.mit.edu	36	6	105338985	105338985	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020771	exon13	c.G1478T	p.R493I	.	.	.
QRSL1	55278	broad.mit.edu	36	6	107209458	107209458	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018292	exon8	c.C1010T	p.S337L	.	.	.
ARMC2	84071	broad.mit.edu	36	6	109356117	109356117	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032131	exon11	c.C1484T	p.A495V	.	.	.
REV3L	5980	broad.mit.edu	36	6	111801787	111801787	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002912	exon13	c.T4464C	p.P1488P	.	.	.
HSF2	3298	broad.mit.edu	36	6	122783033	122783033	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004506	exon7	c.A648G	p.I216M	.	.	.
NCOA7	135112	broad.mit.edu	36	6	126285527	126285527	+	Missense_Mutation	SNP	C	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001199620	exon15	c.C2377G	p.R793G	.	.	.
TRMT11	60487	broad.mit.edu	36	6	126374166	126374166	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001031712	exon9	c.T835C	p.L279L	.	.	.
C6orf174	387104	broad.mit.edu	36	6	127838238	127838238	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012279	exon6	c.G2626A	p.A876T	.	.	.
PHACTR1	221692	broad.mit.edu	36	6	13314323	13314323	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030948	exon7	c.C962T	p.A321V	.	.	.
MAP7	9053	broad.mit.edu	36	6	136725291	136725291	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001198614	exon12	c.G1582T	p.E528X	.	.	.
AIG1	51390	broad.mit.edu	36	6	143646984	143646984	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016108	exon4	c.G444A	p.S148S	.	.	.
FBXO30	84085	broad.mit.edu	36	6	146168013	146168013	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032145	exon2	c.A1222G	p.T408A	.	.	.
SHPRH	257218	broad.mit.edu	36	6	146306520	146306520	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173082	exon9	c.T1690C	p.Y564H	.	.	.
GRM1	2911	broad.mit.edu	36	6	146522242	146522242	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114329	exon3	c.G766A	p.A256T	.	.	.
STXBP5	134957	broad.mit.edu	36	6	147690047	147690047	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001127715	exon18	c.T2022G	p.S674S	.	.	.
ULBP2	80328	broad.mit.edu	36	6	150309255	150309255	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025217	exon3	c.G404A	p.S135N	.	.	.
C6orf97	80129	broad.mit.edu	36	6	151936011	151936011	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025059	exon6	c.A784G	p.S262G	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158417739	158417739	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003898	exon17	c.C2386T	p.R796C	.	.	.
C6orf118	168090	broad.mit.edu	36	6	165635712	165635712	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144980	exon2	c.G89A	p.C30Y	.	.	.
TTLL2	83887	broad.mit.edu	36	6	167673622	167673622	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031949	exon3	c.G244A	p.A82T	.	.	.
THBS2	7058	broad.mit.edu	36	6	169374117	169374117	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003247	exon14	c.C2034T	p.C678C	.	.	.
NUP153	9972	broad.mit.edu	36	6	17777506	17777506	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005124	exon7	c.T1011A	p.N337K	.	.	.
KIF13A	63971	broad.mit.edu	36	6	17893821	17893821	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022113	exon28	c.C3392T	p.A1131V	.	.	.
SLC17A1	6568	broad.mit.edu	36	6	25934766	25934766	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005074	exon3	c.C109T	p.R37C	.	.	.
SLC17A2	10246	broad.mit.edu	36	6	26024992	26024992	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005835	exon8	c.C830T	p.A277V	.	.	.
BTN1A1	696	broad.mit.edu	36	6	26616885	26616885	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001732	exon7	c.T1085C	p.V362A	.	.	.
HIST1H4L	8368	broad.mit.edu	36	6	27949181	27949181	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003546	exon1	c.C87T	p.G29G	.	.	.
OR2B2	81697	broad.mit.edu	36	6	27987487	27987487	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033057	exon1	c.C590T	p.A197V	.	.	.
SERPINB6	5269	broad.mit.edu	36	6	2893551	2893551	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195291	exon8	c.G1111A	p.G371S	.	.	.
HLA-G	3135	broad.mit.edu	36	6	29905586	29905586	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002127	exon6	c.C910T	p.P304S	.	.	.
TRIM15	89870	broad.mit.edu	36	6	30246318	30246318	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033229	exon5	c.C793T	p.R265C	.	.	.
GNL1	2794	broad.mit.edu	36	6	30628920	30628920	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005275	exon7	c.G824A	p.R275Q	.	.	.
C6orf136	221545	broad.mit.edu	36	6	30726832	30726832	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001161376	exon3	c.G1100A	p.R367H	.	.	.
TNXB	7148	broad.mit.edu	36	6	32149526	32149526	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019105	exon12	c.G4557A	p.P1519P	.	.	.
GRM4	2914	broad.mit.edu	36	6	34167825	34167825	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000841	exon2	c.G549A	p.A183A	.	.	.
TEAD3	7005	broad.mit.edu	36	6	35562284	35562284	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003214	exon2	c.A134T	p.E45V	.	.	.
SRPK1	6732	broad.mit.edu	36	6	35945340	35945340	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003137	exon11	c.A1308G	p.S436S	.	.	.
BTBD9	114781	broad.mit.edu	36	6	38364179	38364179	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172418	exon8	c.C1211T	p.A404V	.	.	.
DNAH8	1769	broad.mit.edu	36	6	38837526	38837526	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001371	exon9	c.A935G	p.Q312R	.	.	.
LRFN2	57497	broad.mit.edu	36	6	40507488	40507488	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020737	exon2	c.G1343A	p.R448Q	.	.	.
GUCA1A	2978	broad.mit.edu	36	6	42255027	42255027	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000409	exon6	c.C514T	p.R172X	.	.	.
UBR2	23304	broad.mit.edu	36	6	42766844	42766844	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015255	exon47	c.G5223T	p.Q1741H	.	.	.
CUL9	23113	broad.mit.edu	36	6	43262716	43262716	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015089	exon5	c.G1292A	p.W431X	.	.	.
RPP40	10799	broad.mit.edu	36	6	4941272	4941272	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006638	exon7	c.C805T	p.P269S	.	.	.
TFAP2D	83741	broad.mit.edu	36	6	50791249	50791249	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_172238	exon2	c.C501T	p.S167S	.	.	.
DST	667	broad.mit.edu	36	6	56454868	56454868	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015548	exon71	c.G13601A	p.R4534H	.	.	.
F13A1	2162	broad.mit.edu	36	6	6170085	6170085	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000129	exon7	c.C806T	p.A269V	.	.	.
LGSN	51557	broad.mit.edu	36	6	64048335	64048335	+	Silent	SNP	C	T	T	rs61758980	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016571	exon4	c.G1080A	p.A360A	.	.	.
PHF3	23469	broad.mit.edu	36	6	64480956	64480956	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015153	exon15	c.C5513A	p.P1838Q	.	.	.
LMBRD1	55788	broad.mit.edu	36	6	70465675	70465675	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018368	exon13	c.G1319T	p.S440I	.	.	.
RIMS1	22999	broad.mit.edu	36	6	73002056	73002056	+	Missense_Mutation	SNP	G	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168410	exon3	c.G138C	p.W46C	.	.	.
BMP6	654	broad.mit.edu	36	6	7825569	7825569	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001718	exon7	c.C1536T	p.C512C	.	.	.
LCA5	167691	broad.mit.edu	36	6	80258061	80258061	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181714	exon7	c.A1061G	p.Y354C	.	.	.
ZNF292	23036	broad.mit.edu	36	6	88026663	88026663	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015021	exon8	c.G6597T	p.M2199I	.	.	.
EPHA7	2045	broad.mit.edu	36	6	94123294	94123294	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004440	exon5	c.G1186T	p.E396X	.	.	.
GPR63	81491	broad.mit.edu	36	6	97353864	97353864	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001143957	exon3	c.G465A	p.R155R	.	.	.
THEMIS	387357	broad.mit.edu	36	6	128176544	128176544	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010923	exon4	c.935delA	p.K312fs	.	.	.
SYNJ2	8871	broad.mit.edu	36	6	158427997	158427997	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_003898	exon23	c.3331delC	p.P1111fs	.	.	.
PNLDC1	154197	broad.mit.edu	36	6	160141775	160141775	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173516	exon2	c.25delT	p.F9fs	.	.	.
MRS2	57380	broad.mit.edu	36	6	24531806	24531806	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020662	exon11	c.1237delA	p.K413fs	.	.	.
ZFP57	346171	broad.mit.edu	36	6	29749338	29749338	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001109809	exon4	c.529delT	p.C177fs	.	.	.
TTK	7272	broad.mit.edu	36	6	80808629	80808629	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166691	exon22	c.2562delA	p.G854fs	.	.	.
BTN2A3	54718	broad.mit.edu	36	6	26539164	26539164	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	.	.	.	.	.	.	.
GNA12	2768	broad.mit.edu	36	7	2739629	2739630	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_007353	exon3	c.558_559insT	p.L186fs	.	.	.
SRRT	51593	broad.mit.edu	36	7	100322902	100322902	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001128852	exon16	c.G1998T	p.E666D	.	.	.
MUC17	140453	broad.mit.edu	36	7	100483050	100483050	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040105	exon10	c.T13167C	p.S4389S	.	.	.
TRIM56	81844	broad.mit.edu	36	7	100519057	100519057	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_030961	exon3	c.C1744T	p.R582C	.	.	.
ATXN7L1	222255	broad.mit.edu	36	7	105189101	105189101	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152749	exon4	c.G400A	p.G134R	.	.	.
PIK3CG	5294	broad.mit.edu	36	7	106296281	106296281	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002649	exon2	c.G1039A	p.E347K	.	.	.
LAMB1	3912	broad.mit.edu	36	7	107414010	107414010	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002291	exon6	c.C458T	p.S153L	.	.	.
NRCAM	4897	broad.mit.edu	36	7	107588125	107588125	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037132	exon28	c.G3515A	p.G1172D	.	.	.
KCND2	3751	broad.mit.edu	36	7	119702865	119702865	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012281	exon1	c.T943C	p.Y315H	.	.	.
AASS	10157	broad.mit.edu	36	7	121542442	121542442	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005763	exon9	c.G965A	p.R322H	.	.	.
GCC1	79571	broad.mit.edu	36	7	127010186	127010186	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024523	exon2	c.A1446G	p.Q482Q	.	.	.
PARP12	64761	broad.mit.edu	36	7	139403229	139403229	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022750	exon3	c.T656C	p.L219P	.	.	.
BRAF	673	broad.mit.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
OR2F2	135948	broad.mit.edu	36	7	143263758	143263758	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004685	exon1	c.C500A	p.P167H	.	.	.
ZNF425	155054	broad.mit.edu	36	7	148431889	148431889	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001001661	exon4	c.G2007A	p.P669P	.	.	.
ZNF398	57541	broad.mit.edu	36	7	148506703	148506703	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020781	exon7	c.T293C	p.L98P	.	.	.
XRCC2	7516	broad.mit.edu	36	7	151977290	151977290	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005431	exon3	c.A213C	p.E71D	.	.	.
HDAC9	9734	broad.mit.edu	36	7	18835642	18835642	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178423	exon19	c.C2403T	p.T801T	.	.	.
SP4	6671	broad.mit.edu	36	7	21488152	21488152	+	Nonsense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003112	exon5	c.C1993T	p.R665X	.	.	.
TTYH3	80727	broad.mit.edu	36	7	2656097	2656097	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_025250	exon7	c.C820T	p.P274S	.	.	.
CCDC129	223075	broad.mit.edu	36	7	31584182	31584182	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_194300	exon8	c.C779A	p.A260D	.	.	.
EEPD1	80820	broad.mit.edu	36	7	36303225	36303225	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_030636	exon7	c.G1414A	p.A472T	.	.	.
SDK1	221935	broad.mit.edu	36	7	3968911	3968911	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon9	c.G1331A	p.R444H	.	.	.
SDK1	221935	broad.mit.edu	36	7	3975512	3975512	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152744	exon11	c.C1644T	p.A548A	.	.	.
INHBA	3624	broad.mit.edu	36	7	41706123	41706123	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002192	exon2	c.G375A	p.T125T	.	.	.
DDX56	54606	broad.mit.edu	36	7	44575089	44575089	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_019082	exon11	c.G1321A	p.A441T	.	.	.
IGFBP3	3486	broad.mit.edu	36	7	45922676	45922676	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000598	exon3	c.A746T	p.K249M	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47883685	47883685	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon22	c.C3590T	p.A1197V	.	.	.
PKD1L1	168507	broad.mit.edu	36	7	47886889	47886889	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_138295	exon21	c.T3482G	p.L1161R	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48282430	48282430	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon15	c.C2458A	p.P820T	.	.	.
ABCA13	154664	broad.mit.edu	36	7	48360939	48360939	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152701	exon28	c.T10195G	p.C3399G	.	.	.
POM121L12	285877	broad.mit.edu	36	7	53070986	53070986	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_182595	exon1	c.C128T	p.T43M	.	.	.
EGFR	1956	broad.mit.edu	36	7	55226928	55226928	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005228	exon21	c.G2492A	p.R831H	 EGFR,NS,NS,Substitution - Missense,-2 	.	.
TYW1	55253	broad.mit.edu	36	7	66340784	66340784	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018264	exon16	c.C2032A	p.L678I	.	.	.
WBSCR17	64409	broad.mit.edu	36	7	70813828	70813828	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022479	exon10	c.C1647A	p.Y549X	.	.	.
GTF2IRD1	9569	broad.mit.edu	36	7	73643212	73643212	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005685	exon24	c.G2521A	p.D841N	.	.	.
HGF	3082	broad.mit.edu	36	7	81219438	81219438	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010934	exon5	c.C559T	p.P187S	.	.	.
SEMA3D	223117	broad.mit.edu	36	7	84565114	84565114	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152754	exon2	c.A255G	p.G85G	.	.	.
KIAA1324L	222223	broad.mit.edu	36	7	86394050	86394050	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152748	exon8	c.A707G	p.Y236C	.	.	.
ZNF804B	219578	broad.mit.edu	36	7	88685459	88685459	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181646	exon2	c.T163C	p.F55L	.	.	.
COL1A2	1278	broad.mit.edu	36	7	93896468	93896468	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000089	exon51	c.G3744T	p.K1248N	.	.	.
CASD1	64921	broad.mit.edu	36	7	94011677	94011677	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_022900	exon11	c.C1375T	p.H459Y	.	.	.
BAIAP2L1	55971	broad.mit.edu	36	7	97774966	97774966	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018842	exon10	c.G1134T	p.W378C	.	.	.
CPSF4	10898	broad.mit.edu	36	7	98889554	98889554	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006693	exon7	c.G600A	p.S200S	.	.	.
IQUB	154865	broad.mit.edu	36	7	122930648	122930648	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178827	exon4	c.538delA	p.I180fs	.	.	.
ZNF212	7988	broad.mit.edu	36	7	148578565	148578565	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_012256	exon2	c.407delC	p.A136fs	.	.	.
CACNA2D1	781	broad.mit.edu	36	7	81451932	81451932	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_000722	exon22	c.1828delT	p.Y610fs	.	.	.
ICA1	3382	broad.mit.edu	36	7	8164776	8164776	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004968	exon7	c.611delA	p.N204fs	.	.	.
ANKIB1	54467	broad.mit.edu	36	7	91774850	91774850	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_019004	exon3	c.430delA	p.K144fs	.	.	.
CHCHD3	54927	broad.mit.edu	36	7	132120878	132120878	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
DPY19L2P1	554236	broad.mit.edu	36	7	35123906	35123906	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	.	.	.	.	.	.	.
VPS13B	157680	broad.mit.edu	36	8	100583180	100583180	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152564	exon26	c.A3960G	p.G1320G	.	.	.
ODF1	4956	broad.mit.edu	36	8	103633243	103633243	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024410	exon1	c.G112A	p.D38N	.	.	.
PKHD1L1	93035	broad.mit.edu	36	8	110526612	110526612	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_177531	exon38	c.G5338A	p.A1780T	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113383277	113383277	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon53	c.G8361T	p.L2787F	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113401329	113401329	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon46	c.C7223T	p.T2408M	.	.	.
CSMD3	114788	broad.mit.edu	36	8	113767007	113767007	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198123	exon15	c.T2286G	p.S762S	.	.	.
NEIL2	252969	broad.mit.edu	36	8	11666503	11666503	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001135748	exon3	c.G138T	p.Q46H	.	.	.
FDFT1	2222	broad.mit.edu	36	8	11733376	11733376	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004462	exon8	c.C1103T	p.T368M	.	.	.
SLC30A8	169026	broad.mit.edu	36	8	118239155	118239155	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173851	exon4	c.A463T	p.T155S	.	.	.
FBXO32	114907	broad.mit.edu	36	8	124613327	124613327	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_058229	exon4	c.G364A	p.V122M	.	.	.
KCNQ3	3786	broad.mit.edu	36	8	133256936	133256936	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004519	exon5	c.A879G	p.G293G	.	.	.
ZFAT	57623	broad.mit.edu	36	8	135718924	135718924	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001174157	exon3	c.T410G	p.I137S	.	.	.
CYP11B1	1584	broad.mit.edu	36	8	143955580	143955580	+	Silent	SNP	G	A	A	rs61751149	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001026213	exon3	c.C456T	p.N152N	.	.	.
TOP1MT	116447	broad.mit.edu	36	8	144463016	144463016	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052963	exon14	c.C1776T	p.L592L	.	.	.
GPAA1	8733	broad.mit.edu	36	8	145211448	145211448	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003801	exon7	c.C958T	p.R320C	.	.	.
INTS10	55174	broad.mit.edu	36	8	19738925	19738925	+	Nonsense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018142	exon13	c.C1613A	p.S538X	.	.	.
C8orf80	389643	broad.mit.edu	36	8	27942803	27942803	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010906	exon17	c.C2053T	p.R685W	.	.	.
TEX15	56154	broad.mit.edu	36	8	30825416	30825416	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031271	exon1	c.T660C	p.F220F	.	.	.
CSMD1	64478	broad.mit.edu	36	8	3214298	3214298	+	Silent	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_033225	exon19	c.T2785A	p.S929T	.	.	.
PXDNL	137902	broad.mit.edu	36	8	52421027	52421027	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144651	exon20	c.C3935T	p.T1312M	.	.	.
PLAG1	5324	broad.mit.edu	36	8	57243340	57243340	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001114634	exon3	c.A43G	p.T15A	.	.	.
ANGPT2	285	broad.mit.edu	36	8	6359667	6359667	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001118888	exon5	c.T815A	p.I272N	.	.	.
LACTB2	51110	broad.mit.edu	36	8	71736551	71736551	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_016027	exon2	c.A258G	p.I86M	.	.	.
ZFHX4	79776	broad.mit.edu	36	8	77929961	77929961	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_024721	exon10	c.C8249A	p.S2750Y	.	.	.
FABP4	2167	broad.mit.edu	36	8	82555353	82555353	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001442	exon2	c.G109A	p.A37T	.	.	.
ATP6V0D2	245972	broad.mit.edu	36	8	87195225	87195225	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152565	exon2	c.C302T	p.T101M	.	.	.
SLC26A7	115111	broad.mit.edu	36	8	92470842	92470842	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_134266	exon16	c.G1776A	p.E592E	.	.	.
CCNE2	9134	broad.mit.edu	36	8	95964276	95964276	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_057749	exon10	c.A852G	p.L284L	.	.	.
TNKS	8658	broad.mit.edu	36	8	9630361	9630361	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003747	exon17	c.G2598T	p.Q866H	.	.	.
C8orf47	203111	broad.mit.edu	36	8	99171003	99171003	+	Silent	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_173549	exon2	c.T582C	p.V194V	.	.	.
POP1	10940	broad.mit.edu	36	8	99209130	99209130	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001145860	exon3	c.G274A	p.E92K	.	.	.
ARHGEF10	9639	broad.mit.edu	36	8	1795596	1795596	+	Frame_Shift_Del	DEL	C	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	-	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014629	exon4	c.320delC	p.T107fs	.	.	.
TBC1D2	55357	broad.mit.edu	36	9	100010971	100010971	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_018421	exon9	c.C1950A	p.G650G	.	.	.
GRIN3A	116443	broad.mit.edu	36	9	103375449	103375449	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133445	exon9	c.G3176A	p.R1059Q	.	.	.
OR13F1	138805	broad.mit.edu	36	9	106306601	106306601	+	Silent	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001004485	exon1	c.T237A	p.S79S	.	.	.
PALM2-AKAP2	445815	broad.mit.edu	36	9	111734076	111734076	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_147150	exon6	c.G443A	p.C148Y	.	.	.
SVEP1	79987	broad.mit.edu	36	9	112261187	112261187	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153366	exon19	c.G3350A	p.R1117H	.	.	.
KIAA1958	158405	broad.mit.edu	36	9	114461463	114461463	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_133465	exon4	c.C1444T	p.R482C	.	.	.
HDHD3	81932	broad.mit.edu	36	9	115176433	115176433	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031219	exon2	c.G23A	p.R8Q	.	.	.
DFNB31	25861	broad.mit.edu	36	9	116225536	116225536	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015404	exon7	c.C1505T	p.S502F	.	.	.
DAB2IP	153090	broad.mit.edu	36	9	123568654	123568654	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032552	exon9	c.C1437T	p.R479R	.	.	.
ZBTB6	10773	broad.mit.edu	36	9	124713488	124713488	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006626	exon2	c.G685T	p.G229C	.	.	.
NEK6	10783	broad.mit.edu	36	9	126129482	126129482	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166167	exon7	c.A613C	p.K205Q	.	.	.
HSPA5	3309	broad.mit.edu	36	9	127041428	127041428	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005347	exon5	c.G609A	p.T203T	.	.	.
GOLGA2	2801	broad.mit.edu	36	9	130068402	130068402	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004486	exon8	c.G585A	p.T195T	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130384820	130384820	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon14	c.C1677T	p.H559H	.	.	.
SPTAN1	6709	broad.mit.edu	36	9	130386416	130386416	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195532	exon17	c.A2228C	p.Q743P	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133449584	133449584	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198679	exon21	c.G2845T	p.A949S	.	.	.
RAPGEF1	2889	broad.mit.edu	36	9	133487106	133487106	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198679	exon11	c.G1806T	p.K602N	.	.	.
NTNG2	84628	broad.mit.edu	36	9	134063646	134063646	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032536	exon3	c.A686C	p.N229T	.	.	.
SETX	23064	broad.mit.edu	36	9	134191885	134191885	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015046	exon10	c.G4921A	p.V1641I	.	.	.
TSC1	7248	broad.mit.edu	36	9	134768952	134768952	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001162426	exon17	c.G2112A	p.E704E	.	.	.
SNAPC3	6619	broad.mit.edu	36	9	15423620	15423620	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039697	exon3	c.T463C	p.F155L	.	.	.
SH3GL2	6456	broad.mit.edu	36	9	17737074	17737074	+	Missense_Mutation	SNP	A	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003026	exon2	c.A56T	p.E19V	.	.	.
ADAMTSL1	92949	broad.mit.edu	36	9	18629299	18629299	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_052866	exon7	c.A724G	p.S242G	.	.	.
DOCK8	81704	broad.mit.edu	36	9	301983	301983	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001190458	exon5	c.C354T	p.C118C	.	.	.
TOPORS	10210	broad.mit.edu	36	9	32533159	32533159	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001195622	exon2	c.C1169T	p.T390M	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32622482	32622482	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.T3096C	p.P1032P	.	.	.
TAF1L	138474	broad.mit.edu	36	9	32623671	32623671	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153809	exon1	c.G1907A	p.R636H	.	.	.
C9orf23	138716	broad.mit.edu	36	9	34601288	34601288	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_148178	exon2	c.G6A	p.E2E	.	.	.
STOML2	30968	broad.mit.edu	36	9	35091491	35091491	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_013442	exon6	c.C511T	p.R171C	.	.	.
C9orf100	84904	broad.mit.edu	36	9	35653048	35653048	+	Missense_Mutation	SNP	T	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_032818	exon6	c.A568T	p.T190S	.	.	.
GBA2	57704	broad.mit.edu	36	9	35729672	35729672	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020944	exon9	c.A1535G	p.H512R	.	.	.
NPR2	4882	broad.mit.edu	36	9	35782722	35782722	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon1	c.C317T	p.A106V	.	.	.
NPR2	4882	broad.mit.edu	36	9	35792771	35792771	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003995	exon12	c.C1858T	p.R620C	.	.	.
TRPM3	80036	broad.mit.edu	36	9	72341749	72341749	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001007471	exon25	c.G4064T	p.S1355I	.	.	.
GNA14	9630	broad.mit.edu	36	9	79333849	79333849	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004297	exon2	c.G265A	p.A89T	.	.	.
PTPRD	5789	broad.mit.edu	36	9	8394588	8394588	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001040712	exon20	c.G2929A	p.A977T	.	.	.
UBQLN1	29979	broad.mit.edu	36	9	85490855	85490855	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_053067	exon2	c.T216C	p.H72H	.	.	.
MED27	9442	broad.mit.edu	36	9	133725801	133725801	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	-	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004269	exon8	c.881delC	p.P294fs	.	.	.
CNTLN	54875	broad.mit.edu	36	9	17474353	17474353	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_017738	exon24	c.3916delA	p.K1306fs	.	.	.
JAK2	3717	broad.mit.edu	36	9	5062515	5062515	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004972	exon13	c.1665delT	p.T555fs	.	.	.
ANKRD20A3	441425	broad.mit.edu	36	9	67556465	67556465	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001012419	exon14	c.1369delA	p.K457fs	.	.	.
FGD3	89846	broad.mit.edu	36	9	94806130	94806130	+	Frame_Shift_Del	DEL	G	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001083536	exon5	c.570delG	p.A190fs	.	.	.
RGAG1	57529	broad.mit.edu	36	X	109584511	109584512	+	Frame_Shift_Ins	INS	-	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	G	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020769	exon3	c.4010_4011insG	p.M1337fs	.	.	.
EIF2S3	1968	broad.mit.edu	36	X	24001261	24001262	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-					Unknown	Unknown	Somatic	Phase_I	Capture				Illumina HiSeq	NM_001415	exon11	c.1315_1316insA	p.E439fs	.	.	.
MSN	4478	broad.mit.edu	36	X	64871943	64871944	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002444	exon8	c.885_886insA	p.R295fs	.	.	.
RPS6KA6	27330	broad.mit.edu	36	X	83257910	83257911	+	Frame_Shift_Ins	INS	-	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	-	-	-	A	-	-	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_014496	exon12	c.991_992insT	p.A331fs	.	.	.
BEX5	340542	broad.mit.edu	36	X	101295781	101295781	+	Missense_Mutation	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001159560	exon3	c.T113G	p.V38G	.	.	.
ESX1	80712	broad.mit.edu	36	X	103385646	103385646	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_153448	exon2	c.C351T	p.T117T	.	.	.
NRK	203447	broad.mit.edu	36	X	105048236	105048236	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198465	exon16	c.C2428T	p.R810W	.	.	.
ATG4A	115201	broad.mit.edu	36	X	107263945	107263945	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_178270	exon5	c.T295G	p.W99G	.	.	.
LRCH2	57631	broad.mit.edu	36	X	114304582	114304582	+	Missense_Mutation	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020871	exon11	c.T1376C	p.L459P	.	.	.
CXorf61	203413	broad.mit.edu	36	X	115507089	115507089	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001017978	exon2	c.T189C	p.S63S	.	.	.
DOCK11	139818	broad.mit.edu	36	X	117602810	117602810	+	Silent	SNP	A	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_144658	exon15	c.A1680C	p.S560S	.	.	.
FANCB	2187	broad.mit.edu	36	X	14773279	14773279	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001018113	exon8	c.C1547A	p.S516Y	.	.	.
IDH3G	3421	broad.mit.edu	36	X	152706592	152706592	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004135	exon7	c.C420T	p.D140D	.	.	.
ASMT	438	broad.mit.edu	36	X	1721726	1721726	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171039	exon7	c.T716C	p.L239P	.	.	.
RAI2	10742	broad.mit.edu	36	X	17728719	17728719	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001172739	exon3	c.G1333T	p.D445Y	.	.	.
PPEF1	5475	broad.mit.edu	36	X	18753819	18753819	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152226	exon17	c.C1509T	p.Y503Y	.	.	.
SH3KBP1	30011	broad.mit.edu	36	X	19474015	19474015	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001024666	exon14	c.G1458A	p.A486A	.	.	.
PHEX	5251	broad.mit.edu	36	X	21961126	21961126	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon1	c.G82A	p.G28S	.	.	.
PHEX	5251	broad.mit.edu	36	X	21975116	21975116	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000444	exon3	c.T215G	p.L72R	.	.	.
FTHL17	53940	broad.mit.edu	36	X	30999963	30999963	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031894	exon1	c.G29A	p.R10H	.	.	.
DMD	1756	broad.mit.edu	36	X	31424883	31424883	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004021	exon14	c.G1110A	p.R370R	.	.	.
MXRA5	25878	broad.mit.edu	36	X	3248275	3248275	+	Silent	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_015419	exon5	c.C5451A	p.S1817S	.	.	.
DMD	1756	broad.mit.edu	36	X	32493823	32493823	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004006	exon16	c.A1909G	p.T637A	.	.	.
CXorf22	170063	broad.mit.edu	36	X	35917462	35917462	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152632	exon16	c.C2819T	p.A940V	.	.	.
FAM47C	442444	broad.mit.edu	36	X	36938461	36938461	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001013736	exon1	c.G2057A	p.R686H	.	.	.
TSPAN7	7102	broad.mit.edu	36	X	38410481	38410481	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_004615	exon2	c.C244T	p.R82C	.	.	.
MID1IP1	58526	broad.mit.edu	36	X	38549197	38549197	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001098791	exon2	c.G54A	p.M18I	.	.	.
USP9X	8239	broad.mit.edu	36	X	40960383	40960383	+	Silent	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001039590	exon35	c.T5619G	p.G1873G	.	.	.
ELK1	2002	broad.mit.edu	36	X	47381365	47381365	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005229	exon5	c.C1179T	p.L393L	.	.	.
WDR13	64743	broad.mit.edu	36	X	48348250	48348250	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001166426	exon8	c.G1068A	p.K356K	.	.	.
GATA1	2623	broad.mit.edu	36	X	48535754	48535754	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002049	exon4	c.G679A	p.A227T	.	.	.
OTUD5	55593	broad.mit.edu	36	X	48686417	48686417	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001136157	exon2	c.C666T	p.G222G	.	.	.
GRIPAP1	56850	broad.mit.edu	36	X	48732383	48732383	+	Missense_Mutation	SNP	G	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_020137	exon7	c.C541A	p.P181T	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48955661	48955661	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon34	c.G4027A	p.V1343I	.	.	.
CACNA1F	778	broad.mit.edu	36	X	48971820	48971820	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_005183	exon7	c.C851T	p.A284V	.	.	.
AKAP4	8852	broad.mit.edu	36	X	49844947	49844947	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_003886	exon5	c.G1157A	p.C386Y	.	.	.
MAGED1	9500	broad.mit.edu	36	X	51656782	51656782	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006986	exon4	c.G1291A	p.A431T	.	.	.
HSD17B10	3028	broad.mit.edu	36	X	53476063	53476063	+	Nonsense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001037811	exon3	c.C214T	p.Q72X	.	.	.
HUWE1	10075	broad.mit.edu	36	X	53633470	53633470	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_031407	exon36	c.G4223T	p.R1408L	.	.	.
ITIH5L	347365	broad.mit.edu	36	X	54800504	54800504	+	Missense_Mutation	SNP	T	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_198510	exon8	c.A2728C	p.S910R	.	.	.
PFKFB1	5207	broad.mit.edu	36	X	54988620	54988620	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_002625	exon10	c.C1075T	p.R359C	.	.	.
ZXDA	7789	broad.mit.edu	36	X	57951888	57951888	+	Missense_Mutation	SNP	C	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_007156	exon1	c.G1692T	p.M564I	.	.	.
ARHGEF9	23229	broad.mit.edu	36	X	62792269	62792269	+	Missense_Mutation	SNP	T	C	C	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001173480	exon7	c.A824G	p.E275G	.	.	.
ZC3H12B	340554	broad.mit.edu	36	X	64638460	64638460	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001010888	exon5	c.G1157A	p.R386H	.	.	.
AR	367	broad.mit.edu	36	X	66682520	66682520	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_000044	exon1	c.C807T	p.Y269Y	.	.	.
RAB41	347517	broad.mit.edu	36	X	69420593	69420593	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001032726	exon6	c.C521T	p.A174V	.	.	.
DLG3	1741	broad.mit.edu	36	X	69586851	69586851	+	Missense_Mutation	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_021120	exon5	c.C811T	p.R271C	.	.	.
ZMYM3	9203	broad.mit.edu	36	X	70381412	70381412	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001171162	exon19	c.C3028T	p.P1010S	.	.	.
OGT	8473	broad.mit.edu	36	X	70694228	70694228	+	Missense_Mutation	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_181673	exon12	c.G1553A	p.G518D	.	.	.
PIN4	5303	broad.mit.edu	36	X	71333449	71333449	+	Silent	SNP	A	G	G	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001170747	exon3	c.A282G	p.A94A	.	.	.
SATL1	340562	broad.mit.edu	36	X	84249350	84249350	+	Silent	SNP	C	T	T	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001012980	exon1	c.G1281A	p.R427R	.	.	.
DIAPH2	1730	broad.mit.edu	36	X	96099572	96099572	+	Silent	SNP	G	A	A	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_006729	exon16	c.G1704A	p.A568A	.	.	.
MAP7D2	256714	broad.mit.edu	36	X	19953728	19953728	+	Frame_Shift_Del	DEL	T	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	T	T	T	-	T	T	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001168465	exon9	c.1271delA	p.N424fs	.	.	.
ZFX	7543	broad.mit.edu	36	X	24138531	24138531	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_001178086	exon6	c.848delA	p.E283fs	.	.	.
TAB3	257397	broad.mit.edu	36	X	30771055	30771055	+	Frame_Shift_Del	DEL	A	-	-	novel	unknown	TCGA-AA-3966-01A-01W-1073-09	TCGA-AA-3966-10A-01W-1073-09	A	A	A	-	A	A	Unknown	Valid	Somatic	Phase_I	Capture	Illumina			Illumina HiSeq	NM_152787	exon9	c.1837delT	p.Y613fs	.	.	.
