Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
C10orf90	118611	hgsc.bcm.edu	36	10	128108356	128108356	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001004298	exon7	c.C1951T	p.R651X	.	.	.
C11orf63	79864	hgsc.bcm.edu	36	11	122261893	122261893	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_024806	exon2	c.C126A	p.S42S	.	.	.
LRRC4C	57689	hgsc.bcm.edu	36	11	40094112	40094112	+	Nonsense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_020929	exon2	c.G307T	p.E103X	.	.	.
SLC43A3	29015	hgsc.bcm.edu	36	11	56933317	56933317	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_199329	exon13	c.T1278G	p.F426L	.	.	.
ATP2A2	488	hgsc.bcm.edu	36	12	109263143	109263143	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_170665	exon14	c.C2058T	p.I686I	.	.	.
P11	8909	hgsc.bcm.edu	36	12	46391781	46391781	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001172439	exon9	c.C1017T	p.D339D	.	.	.
CD27	939	hgsc.bcm.edu	36	12	6429607	6429607	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001242	exon3	c.C276T	p.L92L	.	.	.
USP5	8078	hgsc.bcm.edu	36	12	6831632	6831632	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_003481	exon1	c.C28T	p.L10L	.	.	.
CRADD	8738	hgsc.bcm.edu	36	12	92767984	92767984	+	Silent	SNP	C	C	T	rs56944668	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_003805	exon3	c.C406T	p.L136L	.	.	.
SLITRK1	114798	hgsc.bcm.edu	36	13	83353254	83353254	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_052910	exon1	c.C390T	p.D130D	.	.	.
RNASE11	122651	hgsc.bcm.edu	36	14	20122110	20122110	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_145250	exon3	c.C364A	p.R122S	.	.	.
LTBP2	4053	hgsc.bcm.edu	36	14	74089487	74089487	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_000428	exon5	c.C1053A	p.I351I	.	.	.
PLA2G4F	255189	hgsc.bcm.edu	36	15	40221633	40221633	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_213600	exon20	c.C2391A	p.D797E	.	.	.
NEIL1	79661	hgsc.bcm.edu	36	15	73431546	73431546	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_024608	exon3	c.G476A	p.R159Q	.	.	.
NKD1	85407	hgsc.bcm.edu	36	16	49222316	49222316	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_033119	exon8	c.C689T	p.P230L	.	.	.
CTCF	10664	hgsc.bcm.edu	36	16	66202280	66202280	+	Missense_Mutation	SNP	C	C	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	G	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_006565	exon3	c.C44G	p.T15S	.	.	.
SETD1A	9739	hgsc.bcm.edu	36	16	30899358	30899358	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_014712	exon15	c.G4460A	p.R1487Q	.	.	.
SLC38A7	55238	hgsc.bcm.edu	36	16	57271354	57271354	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_018231	exon3	c.G178A	p.V60I	.	.	.
RRAD	6236	hgsc.bcm.edu	36	16	65515115	65515115	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_004165	exon4	c.C454T	p.R152C	.	.	.
VAT1	10493	hgsc.bcm.edu	36	17	38423393	38423393	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_006373	exon4	c.G847A	p.V283I	.	.	.
NLRP1	22861	hgsc.bcm.edu	36	17	5383520	5383520	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_033007	exon7	c.G2809A	p.V937I	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518988	7518988	+	Nonsense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001126114	exon6	c.C586T	p.R196X	 TP53,central_nervous_system,brain,Substitution - Missense,-2 	.	.
RPTOR	57521	hgsc.bcm.edu	36	17	76134150	76134150	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_020761	exon1	c.C126T	p.S42S	.	.	.
DCC	1630	hgsc.bcm.edu	36	18	48121229	48121229	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_005215	exon1	c.C74T	p.A25V	.	.	.
L3MBTL4	91133	hgsc.bcm.edu	36	18	6291951	6291951	+	Missense_Mutation	SNP	T	T	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	T	T	T	A	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_173464	exon4	c.A78T	p.Q26H	.	.	.
ATP9B	374868	hgsc.bcm.edu	36	18	75054199	75054199	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_198531	exon9	c.A902G	p.Y301C	.	.	.
TSPAN16	26526	hgsc.bcm.edu	36	19	11278341	11278341	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_012466	exon5	c.C512T	p.T171M	.	.	.
SLC35E1	79939	hgsc.bcm.edu	36	19	16538411	16538411	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_024881	exon4	c.G688A	p.A230T	.	.	.
CYP2S1	29785	hgsc.bcm.edu	36	19	46392409	46392409	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_030622	exon2	c.G298A	p.G100S	.	.	.
CCDC97	90324	hgsc.bcm.edu	36	19	46518198	46518198	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_052848	exon4	c.C894T	p.D298D	.	.	.
PTPRH	5794	hgsc.bcm.edu	36	19	60399926	60399926	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_002842	exon10	c.C2033T	p.A678V	.	.	.
ZNF582	147948	hgsc.bcm.edu	36	19	61588091	61588091	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_144690	exon5	c.A507C	p.K169N	.	.	.
SETDB1	9869	hgsc.bcm.edu	36	1	149189730	149189730	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001145415	exon13	c.C1753T	p.R585X	.	.	.
LELP1	149018	hgsc.bcm.edu	36	1	151443939	151443939	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001010857	exon2	c.C132T	p.F44F	.	.	.
ATF6	22926	hgsc.bcm.edu	36	1	160056206	160056206	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_007348	exon8	c.C1069T	p.R357W	.	.	.
TAS1R2	80834	hgsc.bcm.edu	36	1	19053743	19053743	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_152232	exon3	c.C808T	p.R270C	.	.	.
IPO13	9670	hgsc.bcm.edu	36	1	44194690	44194690	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_014652	exon3	c.C933T	p.I311I	.	.	.
LRP8	7804	hgsc.bcm.edu	36	1	53502536	53502536	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_017522	exon9	c.G1161A	p.S387S	.	.	.
UBASH3A	53347	hgsc.bcm.edu	36	21	42735660	42735660	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001001895	exon11	c.C1402T	p.R468X	.	.	.
MCM3AP	8888	hgsc.bcm.edu	36	21	46517164	46517164	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_003906	exon8	c.C2204T	p.T735M	.	.	.
hCG_17324	200373	hgsc.bcm.edu	36	2	120099724	120099724	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001029996	exon16	c.G648A	p.S216S	.	.	.
LTBP1	4052	hgsc.bcm.edu	36	2	33099578	33099578	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_206943	exon3	c.G664T	p.A222S	.	.	.
CNRIP1	25927	hgsc.bcm.edu	36	2	68397819	68397819	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_015463	exon2	c.C304T	p.R102W	.	.	.
GKN1	56287	hgsc.bcm.edu	36	2	69060629	69060629	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_019617	exon5	c.C438A	p.S146R	.	.	.
DYSF	8291	hgsc.bcm.edu	36	2	71739591	71739591	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001130982	exon44	c.G4810A	p.A1604T	.	.	.
ECT2	1894	hgsc.bcm.edu	36	3	174003397	174003397	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_018098	exon18	c.C1946T	p.S649F	.	.	.
FETUB	26998	hgsc.bcm.edu	36	3	187853055	187853055	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_014375	exon7	c.C1090T	p.R364C	.	.	.
CCR4	1233	hgsc.bcm.edu	36	3	32970419	32970419	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_005508	exon2	c.C501T	p.F167F	.	.	.
SPRY1	10252	hgsc.bcm.edu	36	4	124542873	124542873	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_005841	exon2	c.A677G	p.K226R	.	.	.
GALNT7	51809	hgsc.bcm.edu	36	4	174456018	174456018	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_017423	exon6	c.G1143A	p.P381P	.	.	.
KLB	152831	hgsc.bcm.edu	36	4	39112498	39112498	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_175737	exon2	c.G1099T	p.A367S	.	.	.
WDR21B	285429	hgsc.bcm.edu	36	4	41678849	41678849	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001029955	exon1	c.G283A	p.E95K	.	.	.
MAPK10	5602	hgsc.bcm.edu	36	4	87208067	87208067	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_138981	exon5	c.T433A	p.L145M	.	.	.
APC	324	hgsc.bcm.edu	36	5	112192515	112192515	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001127511	exon12	c.C1636T	p.R546X	 APC,large_intestine,NS,Substitution - Nonsense,0 	.	.
APC	324	hgsc.bcm.edu	36	5	112203538	112203538	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001127511	exon14	c.C4294T	p.R1432X	 APC,large_intestine,rectum,Substitution - Nonsense,0 	.	.
GRAMD3	65983	hgsc.bcm.edu	36	5	125848012	125848012	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_023927	exon10	c.C867A	p.S289S	.	.	.
CHSY3	337876	hgsc.bcm.edu	36	5	129548681	129548681	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_175856	exon3	c.G1947T	p.K649N	.	.	.
DNAH5	1767	hgsc.bcm.edu	36	5	13954432	13954432	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001369	exon14	c.C1981T	p.R661C	.	.	.
DOCK2	1794	hgsc.bcm.edu	36	5	169394036	169394036	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_004946	exon35	c.G3523A	p.V1175M	.	.	.
CDH12	1010	hgsc.bcm.edu	36	5	22114383	22114383	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_004061	exon5	c.C160T	p.R54C	.	.	.
SLC45A2	51151	hgsc.bcm.edu	36	5	33983185	33983185	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001012509	exon6	c.C1208T	p.T403M	.	.	.
NAIP	4671	hgsc.bcm.edu	36	5	70344170	70344170	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_004536	exon4	c.C329T	p.T110M	.	.	.
RASGRF2	5924	hgsc.bcm.edu	36	5	80445173	80445173	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_006909	exon15	c.C2148A	p.G716G	.	.	.
GCNT2	2651	hgsc.bcm.edu	36	6	10638019	10638019	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_145649	exon3	c.G889A	p.D297N	.	.	.
MYLK4	340156	hgsc.bcm.edu	36	6	2624590	2624590	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001012418	exon9	c.C810T	p.L270L	.	.	.
LRFN2	57497	hgsc.bcm.edu	36	6	40507561	40507561	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_020737	exon2	c.C1270T	p.R424W	.	.	.
BRAF	673	hgsc.bcm.edu	36	7	140099605	140099605	+	Missense_Mutation	SNP	A	A	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	A	A	A	T	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_004333	exon15	c.T1799A	p.V600E	 BRAF,pituitary,NS,Substitution - Missense,0 	.	.
CRHR2	1395	hgsc.bcm.edu	36	7	30659672	30659672	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_001883	exon12	c.C1165A	p.R389R	.	.	.
TXNDC3	51314	hgsc.bcm.edu	36	7	37883008	37883008	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_016616	exon12	c.G868T	p.E290X	.	.	.
GCK	2645	hgsc.bcm.edu	36	7	44158419	44158419	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_000162	exon3	c.C339T	p.D113D	.	.	.
DAGLB	221955	hgsc.bcm.edu	36	7	6436645	6436645	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_139179	exon6	c.G920A	p.G307D	.	.	.
BAZ1B	9031	hgsc.bcm.edu	36	7	72530491	72530491	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_032408	exon7	c.G1236C	p.L412L	.	.	.
SLC12A9	56996	hgsc.bcm.edu	36	7	100297035	100297035	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_020246	exon11	c.G1429A	p.A477T	.	.	.
TUSC3	7991	hgsc.bcm.edu	36	8	15552618	15552618	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_178234	exon3	c.G350A	p.R117H	.	.	.
POLB	5423	hgsc.bcm.edu	36	8	42345965	42345965	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_002690	exon12	c.G728T	p.S243I	.	.	.
CNGB3	54714	hgsc.bcm.edu	36	8	87752427	87752427	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_019098	exon4	c.G354A	p.P118P	.	.	.
POMT1	10585	hgsc.bcm.edu	36	9	133375240	133375240	+	Silent	SNP	C	C	G	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_007171	exon8	c.C735G	p.A245A	.	.	.
PDCD1LG2	80380	hgsc.bcm.edu	36	9	5524898	5524898	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_025239	exon3	c.G209A	p.R70H	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130045451	130045451	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00D-01A-01W-A005-10	TCGA-AA-A00D-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	64f84e93-a50e-4bed-8212-d2bd435dbb59	64d5de38-553a-4817-8570-d646ad34afa7	NM_144967	exon4	c.C382T	p.R128C	.	.	.
