Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	TranscriptID	Exon	ChromChange	AAChange	COSMIC_Codon	COSMIC_Gene	Drug_Target
ZNF239	8187	hgsc.bcm.edu	36	10	43372598	43372598	+	Silent	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001099283	exon2	c.C936A	p.V312V	.	.	.
ANXA8L1	728113	hgsc.bcm.edu	36	10	46587121	46587121	+	Silent	SNP	G	G	A	rs2271517	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001040084	exon4	c.C276T	p.Y92Y	.	.	.
TET1	80312	hgsc.bcm.edu	36	10	70076010	70076010	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_030625	exon4	c.G3518A	p.R1173Q	.	.	.
KCNMA1	3778	hgsc.bcm.edu	36	10	78538327	78538327	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001161353	exon9	c.G1141A	p.A381T	.	.	.
MLLT10	8028	hgsc.bcm.edu	36	10	22002777	22002780	+	Frame_Shift_Del	DEL	GTCT	GTCT	-	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	GTCT	GTCT	GTCT	-	GTCT	GTCT	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001195626	exon10	c.1544_1547del	p.515_516del	.	.	.
TRPC6	7225	hgsc.bcm.edu	36	11	100867531	100867531	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004621	exon3	c.G1094A	p.R365H	.	.	.
UBE4A	9354	hgsc.bcm.edu	36	11	117762421	117762421	+	Missense_Mutation	SNP	T	T	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	T	T	T	C	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004788	exon16	c.T2492C	p.L831P	.	.	.
OR6T1	219874	hgsc.bcm.edu	36	11	123319089	123319089	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001005187	exon1	c.G667T	p.A223S	.	.	.
ANO5	203859	hgsc.bcm.edu	36	11	22214363	22214363	+	Missense_Mutation	SNP	T	T	G	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	T	T	T	G	T	T	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001142649	exon8	c.T724G	p.S242A	.	.	.
ZFP91	80829	hgsc.bcm.edu	36	11	58136866	58136866	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_053023	exon8	c.C964T	p.L322F	.	.	.
RASSF8	11228	hgsc.bcm.edu	36	12	26109216	26109216	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_007211	exon4	c.C622T	p.R208C	.	.	.
GDF3	9573	hgsc.bcm.edu	36	12	7739345	7739345	+	Missense_Mutation	SNP	G	G	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	C	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_020634	exon1	c.C247G	p.L83V	.	.	.
FREM2	341640	hgsc.bcm.edu	36	13	38163234	38163234	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_207361	exon1	c.C3753A	p.S1251R	.	.	.
CORO2B	10391	hgsc.bcm.edu	36	15	66774631	66774631	+	Silent	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_006091	exon3	c.G315A	p.S105S	.	.	.
UBN1	29855	hgsc.bcm.edu	36	16	4850694	4850694	+	Missense_Mutation	SNP	A	A	G	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	A	G	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_016936	exon6	c.A700G	p.K234E	.	.	.
GRIN2A	2903	hgsc.bcm.edu	36	16	9765180	9765180	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001134408	exon13	c.G3722A	p.R1241Q	.	.	.
GAS2L2	246176	hgsc.bcm.edu	36	17	31097332	31097332	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_139285	exon6	c.G1297T	p.G433W	.	.	.
KRT37	8688	hgsc.bcm.edu	36	17	36832173	36832173	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_003770	exon4	c.C772T	p.R258W	.	.	.
PSMC5	5705	hgsc.bcm.edu	36	17	59260609	59260609	+	Silent	SNP	A	A	G	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_002805	exon3	c.A120G	p.Q40Q	.	.	.
TP53	7157	hgsc.bcm.edu	36	17	7518275	7518275	+	Missense_Mutation	SNP	C	C	T	rs28934572	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001126114	exon7	c.G731A	p.G244D	 TP53,central_nervous_system,brain,Substitution - Missense,+2 	.	.
TSHZ3	57616	hgsc.bcm.edu	36	19	36461981	36461981	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_020856	exon2	c.G558A	p.P186P	.	.	.
ZNF382	84911	hgsc.bcm.edu	36	19	41792734	41792734	+	Silent	SNP	T	T	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	T	T	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_032825	exon3	c.T78C	p.P26P	.	.	.
CYP2A13	1553	hgsc.bcm.edu	36	19	46291480	46291480	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_000766	exon6	c.G937A	p.G313S	.	.	.
PSG9	5678	hgsc.bcm.edu	36	19	48454879	48454879	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_002784	exon4	c.C958T	p.R320C	.	.	.
DHX34	9704	hgsc.bcm.edu	36	19	52550273	52550273	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_014681	exon3	c.C843A	p.V281V	.	.	.
AURKC	6795	hgsc.bcm.edu	36	19	62435727	62435727	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_003160	exon4	c.C200A	p.P67H	.	.	.
NBPF16	728936	hgsc.bcm.edu	36	1	147019944	147019944	+	Missense_Mutation	SNP	C	C	T	rs1043672	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001102663	exon12	c.C1337T	p.T446I	.	.	.
ARNT	405	hgsc.bcm.edu	36	1	149051138	149051138	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001197325	exon21	c.C2305T	p.P769S	.	.	.
TUFT1	7286	hgsc.bcm.edu	36	1	149808778	149808778	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_020127	exon7	c.G502T	p.D168Y	.	.	.
ASTN1	460	hgsc.bcm.edu	36	1	175104683	175104683	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004319	exon22	c.C3567A	p.H1189Q	.	.	.
ARID1A	8289	hgsc.bcm.edu	36	1	26931856	26931856	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_006015	exon4	c.C1906T	p.P636S	.	.	.
C1orf38	9473	hgsc.bcm.edu	36	1	28084509	28084509	+	Nonsense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001039477	exon3	c.G352T	p.E118X	.	.	.
LRRC7	57554	hgsc.bcm.edu	36	1	70314397	70314397	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_020794	exon22	c.G4166A	p.R1389H	.	.	.
LPAR3	23566	hgsc.bcm.edu	36	1	85052320	85052320	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_012152	exon3	c.G859A	p.V287I	.	.	.
E2F2	1870	hgsc.bcm.edu	36	1	23709169	23709169	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004091	exon7	c.G1104A	p.L368L	.	.	.
LRP2	4036	hgsc.bcm.edu	36	2	169752927	169752927	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004525	exon49	c.C9127T	p.R3043C	.	.	.
COL6A3	1293	hgsc.bcm.edu	36	2	237940176	237940176	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_057166	exon8	c.G3572A	p.R1191H	.	.	.
NRBP1	29959	hgsc.bcm.edu	36	2	27518092	27518092	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_013392	exon18	c.G1517A	p.R506Q	.	.	.
ASTL	431705	hgsc.bcm.edu	36	2	96153397	96153397	+	Missense_Mutation	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	A	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001002036	exon9	c.G1215T	p.Q405H	.	.	.
SNRNP200	23020	hgsc.bcm.edu	36	2	96317000	96317000	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_014014	exon26	c.C3388T	p.R1130C	.	.	.
ZPLD1	131368	hgsc.bcm.edu	36	3	103670547	103670547	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_175056	exon8	c.C859T	p.R287W	.	.	.
TRIM42	287015	hgsc.bcm.edu	36	3	141884455	141884455	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_152616	exon2	c.C803T	p.S268L	.	.	.
ITGA9	3680	hgsc.bcm.edu	36	3	37542546	37542546	+	Silent	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_002207	exon13	c.C1353T	p.S451S	.	.	.
LRTM1	57408	hgsc.bcm.edu	36	3	54933725	54933725	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_020678	exon2	c.C565T	p.L189F	.	.	.
GHSR	2693	hgsc.bcm.edu	36	3	173648822	173648822	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_198407	exon1	c.G76A	p.G26S	.	.	.
APC	324	hgsc.bcm.edu	36	5	112202530	112202530	+	Nonsense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001127511	exon14	c.C3286T	p.R1096X	 APC,large_intestine,colon,Substitution - Nonsense,0 	.	.
MRPS30	10884	hgsc.bcm.edu	36	5	44850896	44850896	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_016640	exon5	c.A1155C	p.Q385H	.	.	.
IQGAP2	10788	hgsc.bcm.edu	36	5	76003479	76003479	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_006633	exon24	c.G2983A	p.D995N	.	.	.
WDR41	55255	hgsc.bcm.edu	36	5	76794738	76794738	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_018268	exon4	c.T286G	p.L96V	.	.	.
SYNE1	23345	hgsc.bcm.edu	36	6	152758475	152758475	+	Silent	SNP	C	C	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_033071	exon51	c.G7602T	p.L2534L	.	.	.
TAP2	6891	hgsc.bcm.edu	36	6	32908501	32908501	+	Missense_Mutation	SNP	C	C	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	C	C	C	T	C	C	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_018833	exon6	c.G1024A	p.V342I	.	.	.
PRSS35	167681	hgsc.bcm.edu	36	6	84290433	84290433	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001170423	exon3	c.G554A	p.R185K	.	.	.
KLHL32	114792	hgsc.bcm.edu	36	6	97639840	97639840	+	Missense_Mutation	SNP	A	A	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	A	C	A	A	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_052904	exon6	c.A529C	p.S177R	.	.	.
NIPSNAP3B	55335	hgsc.bcm.edu	36	9	106568485	106568485	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_018376	exon2	c.G119A	p.R40H	.	.	.
AQP3	360	hgsc.bcm.edu	36	9	33432939	33432939	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_004925	exon4	c.C403A	p.L135I	.	.	.
CDC14B	8555	hgsc.bcm.edu	36	9	98325486	98325486	+	Missense_Mutation	SNP	G	G	A	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	A	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_001077181	exon11	c.C1012T	p.R338C	.	.	.
C9orf156	51531	hgsc.bcm.edu	36	9	99712199	99712199	+	Silent	SNP	A	A	C	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	A	A	.	.	.	.	Unknown	Unknown	Somatic	Phase_I	Capture	.			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_016481	exon4	c.T930G	p.P310P	.	.	.
RP13-102H20.1	158763	hgsc.bcm.edu	36	X	130047365	130047365	+	Missense_Mutation	SNP	G	G	T	novel	unknown	TCGA-AA-A00L-01A-01W-A005-10	TCGA-AA-A00L-10A-01W-A005-10	G	G	G	T	G	G	Unknown	Valid	Somatic	Phase_I	Capture	454_PCR_WGA			SOLID	c047b542-4ce6-43cc-abbe-344ad1a12bdd	0a2ae9e3-c40e-43ff-b6f3-64b7271aa703	NM_144967	exon8	c.G1078T	p.D360Y	.	.	.
